Citrus Sinensis ID: 013334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHcccccccHHHcccccHHHHHHHHHHHHHHHcccccccHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHHHccccHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcc
Coil and Loop (DISEMBL)
mskfdyprlsaTEIVTILTETEIAVITendlknpnpdfvSDLYTRLLIFLDvlheddqgQLDFAALEqlenpdlhvRSVQIMKLYSMVKEVVTtvncpmnftlkdlirpdatRTEYFLSAILNFCLYkdtkmnllrpiaedlTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEktgaldekfsQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNsigtllpvteiess
Flexible Loop (DISEMBL)
mskfdyprlsaTEIVTILTETEIAVitendlknpnpDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIqdlnkhqvslrtTLNKLKEKTGALDEKFSQTEFDLVQSvqqnadlrskivqspeklqrtleeKKSIREEARDAEKLamqsfqekttTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSlkarlnddvVLDKSLEAKLierqgkveqlDELQQQLekernlksedatRAFENVKLEMESKRQDLEARQKKVEAVVTevdaitsktkfvkesGAAKLQELASKAEEIVEKFQQytnsigtllpvteiess
Low Complexity Region (SEG)
MSKFDYPRLSateivtilteteiaviteNDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVeqldelqqqlekeRNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Disordered region (IsUnstruct)
*******RLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLT*****************AEIAAYNEVRERELPLVQEVDAKVKEL**TI*************************************************************************************************************************************V****************************************************************VVTEVDAIT***********************IVEKFQQYTNSIGTLLP*******
Disordered Region (DISOPRED)
*SKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQL*F*****LENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRP********************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKT**********MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM****************VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Disordered Region (DISPRO)
***FDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxRERELPLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKxxxxxxxxxxxxxxxxxxxxxAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAxxxxxxxxxxxxxxxxxxxxxxxxxVTEVDAITSKTKFVKESGAAKxxxxxxxxxxxxxxxxxxxxxIGTLLPVTEIESS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
P0CP40	467	Probable kinetochore prot	yes	no	0.820	0.781	0.248	5e-12
P0CP41	467	Probable kinetochore prot	N/A	no	0.820	0.781	0.248	6e-12
Q7ZW63	454	Kinetochore protein Nuf2	yes	no	0.833	0.817	0.259	2e-10
Q9BZD4	464	Kinetochore protein Nuf2	yes	no	0.662	0.635	0.248	2e-09
Q6AYL9	464	Kinetochore protein Nuf2	yes	no	0.835	0.801	0.267	4e-09
Q6CJ06	451	Probable kinetochore prot	yes	no	0.507	0.501	0.226	7e-08
Q10173	441	Kinetochore protein nuf2	yes	no	0.912	0.920	0.210	1e-07
Q7S9H0	464	Probable kinetochore prot	N/A	no	0.530	0.508	0.254	3e-07
Q76I90	469	Kinetochore protein Nuf2	yes	no	0.694	0.658	0.228	2e-06
Q2UEA0	463	Probable kinetochore prot	yes	no	0.746	0.717	0.245	2e-06

>sp|P0CP40|NUF2_CRYNJ Probable kinetochore protein NUF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NUF2 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 191/447 (42%), Gaps = 82/447 (18%)

Query: 6   YPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFL-----DVLHEDDQ-- 58
           +P L+A +I+  L   +I    E DL  P       +Y  LL  L     + +    Q  
Sbjct: 15  FPLLTAHDILECLAALDIPAQME-DLTKPTAQSTQSIYGSLLEVLMGASINSIEGPKQAL 73

Query: 59  -GQLDFAALE---------QLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIR 108
            G +++  L           L   +++  ++Q M  +   + +      P +F + DL R
Sbjct: 74  LGMMEYKVLSFRSMKRTQINLSRQEMYSDTLQFMMFFKHCRRLALLCGIP-DFAISDLAR 132

Query: 109 PDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA---EIAA 165
           PDA R    LS I+NF  ++D +M       E+L +  ++  +L  K  +L     EI A
Sbjct: 133 PDANRLRKVLSGIMNFAKFRDERMQTQARFQENLQKHQKKAVDLRRKTEELETQFQEITA 192

Query: 166 YNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 225
            N     E P  ++   + + L+  + +LN  ++       +LK++   L E+ +     
Sbjct: 193 RNAA---ERPQSEQAQKRNELLKSELLELNSQRLKEVQEYEELKKERQTLLEQVNHNNRI 249

Query: 226 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKT--------- 276
           + Q   Q    +S++VQSP++++R + E       A  +EK  + SFQ+K          
Sbjct: 250 VTQLELQIGSAKSRLVQSPDRIKRHISEMSF----AIQSEKAKLASFQQKARELTNRLEV 305

Query: 277 -TTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLI 335
              LEV  + L  +       +A  E+   +KS      +L+AR          LE + I
Sbjct: 306 IGALEVDLRGLIDLEHSIQDQRAKTEEAKRSKS------ALEAR----------LEGRQI 349

Query: 336 ERQGKVEQLDELQQQLE----------------KERN------LKSEDATRAFENVKLEM 373
           E QG   +L++LQ+QL+                +ER       LK+E   RA E  + E 
Sbjct: 350 ESQGLAAKLEQLQRQLQNASHKLARQEETRKGMRERGARRIDELKAEYKVRARE--RGEW 407

Query: 374 ESKRQDLEARQKKVEAVVTEVDAITSK 400
           + +R DL A QK++E   +E+ A  +K
Sbjct: 408 QKQRDDLLAEQKELE---SEMAAFVTK 431

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CP41|NUF2_CRYNB Probable kinetochore protein NUF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NUF2 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 191/447 (42%), Gaps = 82/447 (18%)

Query: 6   YPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFL-----DVLHEDDQ-- 58
           +P L+A +I+  L   +I    E DL  P       +Y  LL  L     + +    Q  
Sbjct: 15  FPLLTAHDILECLAALDIPAQME-DLTKPTAQSTQSIYGSLLEVLMGASINSIEGPKQAL 73

Query: 59  -GQLDFAALE---------QLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIR 108
            G +++  L           L   +++  ++Q M  +   + +      P +F + DL R
Sbjct: 74  LGMMEYKVLSFRSMKRTQINLSRQEMYSDTLQFMMFFKHCRRLALLCGIP-DFAISDLAR 132

Query: 109 PDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA---EIAA 165
           PDA R    LS I+NF  ++D +M       E+L +  ++  +L  K  +L     EI A
Sbjct: 133 PDANRLRKVLSGIMNFAKFRDERMQTQARFQENLQKHQKKAVDLRRKTEELETQFQEITA 192

Query: 166 YNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 225
            N     E P  ++   + + L+  + +LN  ++       +LK++   L E+ +     
Sbjct: 193 RNAA---ERPQSEQAQKRNELLKSELLELNSQRLKEVQEYEELKKERQTLLEQVNHNNRI 249

Query: 226 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKT--------- 276
           + Q   Q    +S++VQSP++++R + E       A  +EK  + SFQ+K          
Sbjct: 250 VTQLELQIGSAKSRLVQSPDRIKRHISEMSF----AIQSEKAKLASFQQKARELTNRLEV 305

Query: 277 -TTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLI 335
              LEV  + L  +       +A  E+   +KS      +L+AR          LE + I
Sbjct: 306 IGALEVDLRGLIDLEHSIQDQRAKTEEAKRSKS------ALEAR----------LEGRQI 349

Query: 336 ERQGKVEQLDELQQQLE----------------KERN------LKSEDATRAFENVKLEM 373
           E QG   +L++LQ+QL+                +ER       LK+E   RA E  + E 
Sbjct: 350 ESQGLAAKLEQLQRQLQNASHKLARQEETRKGMRERGARRIDELKAEYKVRARE--RGEW 407

Query: 374 ESKRQDLEARQKKVEAVVTEVDAITSK 400
           + +R DL A QK++E   +E+ A  +K
Sbjct: 408 QKQRDDLLAEQKELE---SEMAAFVTK 431

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q7ZW63|NUF2_DANRE Kinetochore protein Nuf2 OS=Danio rerio GN=nuf2 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 202/435 (46%), Gaps = 64/435 (14%)

Query: 17  ILTETEIAVITENDL-KNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLH 75
           +LT  E    T+NDL   P P+ V  LY R+L  L     +    +  +  E ++ P L+
Sbjct: 22  VLTGQESKHFTKNDLTPTPKPESVQRLYMRILQLLFRFRPECHYTVPLS--ENIQYPMLY 79

Query: 76  VRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLL 135
                IM +Y  + + +       +F+L DL+ P   RT   LSAI NF  ++  ++   
Sbjct: 80  ESFAPIMSVYMRMCQFLPVCRV-YDFSLSDLLNPKTKRTITILSAIQNFLHFRKQRL--- 135

Query: 136 RPIAEDLTRLDEQ--RSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQD 193
                ++T   +Q  R+++ D++     EI    +  E+   +  E  A+ KEL   + +
Sbjct: 136 -----EITAAHQQSFRADM-DRLQAYTREIKEAEKKIEKLTTIPPEQQAEAKELASALAE 189

Query: 194 LN---KHQVSLRTTLN----KLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK 246
           L+   +H+    + +N    + K +   L +K +Q + ++     + + L+S+IV+SPE+
Sbjct: 190 LSTNTQHEYQDVSAINEKVAQFKTEIAELSQKLTQRKVEVATLKDEISKLKSQIVESPEE 249

Query: 247 LQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ--VN 304
           L+  +E    +RE A++                        KMSK+ A  + +  Q  V 
Sbjct: 250 LKNEMER---MRETAKNI-----------------------KMSKELADERLVELQMLVQ 283

Query: 305 SAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE-RNLKSEDA- 362
            A  +E + + L  +L D   L  S+ +K  +R+ +V+ L+ + + L+KE ++L SE+A 
Sbjct: 284 CASQVEAEIQILLKQLQD---LQSSM-SKTKQRKEEVQSLEVMNESLQKELKSLSSEEAQ 339

Query: 363 -TRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEE 421
             RA   +KL+ ESK+Q    RQKK E    +V  I  +     +    K QE+  K EE
Sbjct: 340 LKRAL-TMKLDKESKQQI--RRQKKKEVKDQQVKNIYGQY----DKMHQKRQEIVKKIEE 392

Query: 422 IVEKFQQYTNSIGTL 436
              + +Q+   +  L
Sbjct: 393 CNRETKQFKEKMQAL 407

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Danio rerio (taxid: 7955)

>sp|Q9BZD4|NUF2_HUMAN Kinetochore protein Nuf2 OS=Homo sapiens GN=NUF2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 159/354 (44%), Gaps = 59/354 (16%)

Query: 1   MSKFDYPRLSATEIVT-----ILTETEIAVITENDL-KNPNPDFVSDLYTRLLIFLDVLH 54
           M    +PR +  EIV      ILT  +   +T+NDL  NP P+ +  +Y R L       
Sbjct: 1   METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRAL------- 53

Query: 55  EDDQGQLDFAA-LEQLENPDLH--VRSVQIMKLYSMVKEVVTTVN-----CPMN-FTLKD 105
                Q+ +   LE      ++  V    +M+ +     +VT ++     C +N F   D
Sbjct: 54  -----QIVYGIRLEHFYMMPVNSEVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETAD 108

Query: 106 LIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAA 165
           ++ P A RT  FLS I+NF  +++          E       Q     DK+ QLNA   A
Sbjct: 109 ILCPKAKRTSRFLSGIINFIHFREA-------CRETYMEFLWQYKSSADKMQQLNA---A 158

Query: 166 YNEV-----RERELPL-----VQEVDAKVKELRQTI-QDLNKHQVSLRTTLNKLKEKTGA 214
           + E      R   +P+      +++   ++EL+Q++ QD ++  + L+   ++ K     
Sbjct: 159 HQEALMKLERLDSVPVEEQEEFKQLSDGIQELQQSLNQDFHQKTIVLQEGNSQKKSNISE 218

Query: 215 LDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQ- 273
             ++ ++ +  +V   +    L++KIV SPEKL+   E+ K   ++ ++A +  ++ ++ 
Sbjct: 219 KTKRLNELKLSVVSLKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKYEI 278

Query: 274 -------EKTTTLEV--YQKTLKKMSKQSAQMQAIL-EQVNSAKSIEKDYKSLK 317
                    +  LEV  YQK ++ +S    ++ +IL E +N    IE D   LK
Sbjct: 279 YGDSVDCLPSCQLEVQLYQKKIQDLSDNREKLASILKESLNLEDQIESDESELK 332

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.

Homo sapiens (taxid: 9606)

>sp|Q6AYL9|NUF2_RAT Kinetochore protein Nuf2 OS=Rattus norvegicus GN=Nuf2 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 210/467 (44%), Gaps = 95/467 (20%)

Query: 1   MSKFDYPRLSATEIVT-----ILTETEIAVITEND-LKNPNPDFVSDLYTRLLIFLDVLH 54
           M    +PR +  EIV      +LT  +   ++++D L NP P+ +  +Y R L       
Sbjct: 1   METLSFPRYNIAEIVVHIRNKLLTGADGKNLSKSDFLPNPKPEVLYMIYMRAL------- 53

Query: 55  EDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVN------------CPMN-F 101
                QL +    +LE+   ++  V I  +Y  + E    V+            C +N F
Sbjct: 54  -----QLVYGV--RLEH--FYMMPVNIEVMYPHIMEGFLPVSNLFFHLDSFMPICRVNDF 104

Query: 102 TLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQL-N 160
            + D++ P A RT  FLS I+NF  +++T    L    E L     Q     DKI QL N
Sbjct: 105 EIADILYPKANRTSRFLSGIINFIHFRET---CLEKYEEFLL----QNKSSVDKIQQLSN 157

Query: 161 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK-LKEKTGALDEKF 219
           A   A  ++ +     V+E + + K+L+  IQ+L       +  LN+  ++KT  L E++
Sbjct: 158 AHQEALMKLEKLNSVPVEEQE-EFKQLKDDIQEL-------QHLLNQDFRQKTTLLQERY 209

Query: 220 SQTEFDL-------------VQSVQQNAD-LRSKIVQSPEKLQRTLEEKKSIREEARDAE 265
           ++ + D              V S+++  D L+SKIV SPEKL+   E+ K   ++ R A 
Sbjct: 210 TKMKSDFSEKTKHVNELKLSVVSLKEVQDSLKSKIVDSPEKLKNYKEKMKDTVQKLRSAR 269

Query: 266 KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS---AKSIEKDYKSLKARLND 322
           +  M+ +       ++Y+ ++  +   S Q++  L Q  S   A + EK    LK  LN 
Sbjct: 270 EEVMEKY-------DIYRDSVDCLP--SCQLEVQLYQKKSQDLADNREKLSSILKESLN- 319

Query: 323 DVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSED-ATRAF------ENVKLEMES 375
                  LE ++     ++++L   +  L +   LK E  AT  F      E+VK    +
Sbjct: 320 -------LEGQIDSDSSELKKLKTEENSLIRLMTLKKERLATMQFKINKKQEDVKQYKRT 372

Query: 376 KRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEI 422
             +D    Q+K +AV  +V AI      +K SG  +L++ A K E++
Sbjct: 373 MIEDCNKVQEKRDAVCEQVTAINQDIHKIK-SGIQQLRD-AEKREKL 417

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.

Rattus norvegicus (taxid: 10116)

>sp|Q6CJ06|NUF2_KLULA Probable kinetochore protein NUF2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NUF2 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHE---D 56
           MSK  +P L  +E+VT L   + ++  E ++  P+  +V  LY +++  F+ V  +    
Sbjct: 1   MSKDVFPLLELSELVTCLQSCDFSLAVEENISKPSSQYVITLYKQIIDTFMGVSPDTLLS 60

Query: 57  DQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEY 116
           ++   D +    ++    +  +V+++ L  +  +    +    +F + DL +PD+ RT  
Sbjct: 61  NEALFDNSGSNDIQQNPAYTETVKVLALNKICFKFFQDIGVS-DFNMMDLYKPDSLRTRR 119

Query: 117 FLSAILNFCLYKDTKM-NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY-NEVREREL 174
            LSA++N+  +++ +M +  + +++    L++ RS+ +D  + L  +I  + NE+  RE 
Sbjct: 120 LLSAVVNYARFREERMFDCDKFMSKTEFLLNQLRSKFDD-YNYLQQQINKHRNEIELREG 178

Query: 175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ 228
              + +  + K L Q I  L   Q +L    N  K +  +L     +  F+L++
Sbjct: 179 ETFETLQQQNKHLDQQISRLKGLQETLNIDYNAYKSRKQSLLHDLEKFGFELIE 232

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q10173|NUF2_SCHPO Kinetochore protein nuf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nuf2 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/447 (21%), Positives = 214/447 (47%), Gaps = 41/447 (9%)

Query: 3   KFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQL 61
           K  +P L   EI+  +    I   T  +L  P    V  LY   L +F+ +  ++ + ++
Sbjct: 4   KHTFPSLKRAEILECIDGLGIP-FTAKELDQPTSKAVIPLYEEFLDLFMGLTRQNLEEKV 62

Query: 62  DFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAI 121
           + +  + +EN ++   S++    Y ++ + +  + C  +FT++DL++PD  R +  LSA+
Sbjct: 63  N-SLQDSVENFEIIHESLRFTVFYQILSQFMQNI-CFHDFTIQDLLKPDRNRLQLILSAV 120

Query: 122 LNFCLYKDTKMNLL-------RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVREREL 174
           +NF   ++ ++            + E  T LD QR +LE+K+      + + +   E E 
Sbjct: 121 INFAKLREERLQQFDDDIQKRESLLETYTLLDAQRKDLEEKV------LLSQDRKLESE- 173

Query: 175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 234
            ++++ + + +E+ Q++ +  +    +RT  ++++ +   L  ++   +  +  ++++  
Sbjct: 174 AIIKQNEERNEEMFQSLIEDKRLCSQVRTEYDRIRMEASELKIRYHNVDSLMASTLEEIE 233

Query: 235 DLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQS----FQEKTTTLEVYQKTLKKMS 290
            L+S IV SPEKL+  + +  S+R +   ++++ +         K  +L++ +  L    
Sbjct: 234 KLQSSIVHSPEKLKGKIADT-SLRIQNDRSQQVELDKKSKILHTKLNSLQLIEGDLNACL 292

Query: 291 KQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKS-LEAKLIERQGKVEQLDELQQ 349
           K   +    L+++  A  +     S    L D + ++K  LE +   ++  ++QL   Q+
Sbjct: 293 KVLEECLVELDKLEHATVL----LSTNQELCDQIEINKKKLEFR---KEQLLKQLSNAQE 345

Query: 350 QLEKE---RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE 406
           +LE E   RN K E A +  +N++ E +   Q+   R KK++    E +   +  +  ++
Sbjct: 346 KLEHEQHSRNQKLEAAKQRMDNIREEYKVITQE---RNKKIQ----ETEKKNAMIEMTEQ 398

Query: 407 SGAAKLQELASKAEEIVEKFQQYTNSI 433
             A   +EL S+   I  +F++  + +
Sbjct: 399 KIAGMREELESQISSITMEFEKLKSHV 425

Acts as a component of the NMS (Ndc80-MIND-Spc7) super complex which has a role in kinetochore function during late meiotic prophase and throughout the mitotic cell cycle. Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7S9H0|NUF2_NEUCR Probable kinetochore protein nuf-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuf-2 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 23/259 (8%)

Query: 8   RLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLD---FA 64
           RL   EIV  + E  I   T  DL+ PNP  V  ++     F ++L    +  +D    A
Sbjct: 32  RLPDREIVGCINELGIP-FTLADLQKPNPIQVQMIFE---WFGELLMNKTRQTVDPAMRA 87

Query: 65  ALEQLENPDLHVRSV-----QIMKLYSMVKEVVTTVNCPMN-FTLKDLIRPDATRTEYFL 118
           A E +  P+L    +      ++  Y  ++ ++  ++C +N F+  DL +P   R    L
Sbjct: 88  AAEDVCGPELGEAMMPSDTRNLLGFYVSLRRLM--LDCGVNDFSFNDLYKPTHDRLVRML 145

Query: 119 SAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELED-KISQLNAEIAAYNEVRERELP-- 175
           S ++NF  +++++ ++   I E   + ++ ++ +E   +   N E A   E+R       
Sbjct: 146 SYVINFVRFRESQTSV---IDEHCNKAEQTKARIEQLYVENQNME-AQLEEMRHNRRAME 201

Query: 176 -LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 234
            LVQE   + +EL++ + +L + Q  +   L + K K G L  +  +     +   Q++A
Sbjct: 202 VLVQEKTVRNEELKKRLLELRRSQEKVAARLEEAKTKKGELAAELEEKTATKIALKQESA 261

Query: 235 DLRSKIVQSPEKLQRTLEE 253
            LR  ++QSP  LQ +L E
Sbjct: 262 KLRPYVLQSPSALQASLAE 280

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q76I90|NUF2_CHICK Kinetochore protein Nuf2 OS=Gallus gallus GN=NUF2 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 163/372 (43%), Gaps = 63/372 (16%)

Query: 1   MSKFDYPRLSATEIVT-----ILTETEIAVITENDL-KNPNPDFVSDLYTRLLIFLDVLH 54
           M    +PR S  +IV      +L   E   +T+ DL     P+ +       +IF+ +L 
Sbjct: 1   MEALTFPRYSPDDIVAYLRSHVLVGAEARNLTKADLFATLKPEVLH------MIFIRILQ 54

Query: 55  EDDQGQLDFAALEQLE----NPDLHVRSVQIMKLYSMVKEVVTTVNCPMN-FTLKDLIRP 109
           +    +L+   +  +      P +    + +  LY  ++  +    C +N F + D+I P
Sbjct: 55  KVYGIRLEHFYMMPVNVDIVYPQIFEGFLPVCNLYIHMERFLPV--CRVNDFQMSDVINP 112

Query: 110 DATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 169
            A RT  FLS ILNF  +++ +      +  +     E+  +LE    +L  ++   N V
Sbjct: 113 KAKRTARFLSGILNFVHFRECRREAYLELQLNYKSAMEKHQQLETANQELEMKLEKLNTV 172

Query: 170 RERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 229
                P+ Q+  A+ K+L   IQ+L +         +  + KT AL E  SQ + D+ + 
Sbjct: 173 -----PVEQQ--AEFKQLSDDIQELEQ------LLSHDYRRKTAALQEVISQKKSDITER 219

Query: 230 V--------------QQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEK 275
                          ++   L+SKIV+SPE+L+   E  K   ++ + +++  ++ ++  
Sbjct: 220 TRKLNELKVTMATLKEEQEQLKSKIVESPEELKNYKELMKETVKKLKKSKQEVIEKYEGY 279

Query: 276 TTTLEV----------YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKS----LKARLN 321
              +EV          YQ   KKM +Q+A ++ +   ++  +++E   +S    LK    
Sbjct: 280 RDLVEVLPSCQLEVQLYQ---KKMERQAANVERLASVLSEVRNLEDQLESAQIELKKGKT 336

Query: 322 DDVVLDKSLEAK 333
           D++ L + + AK
Sbjct: 337 DEMSLKRLVTAK 348

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Gallus gallus (taxid: 9031)

>sp|Q2UEA0|NUF2_ASPOR Probable kinetochore protein nuf2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=nuf2 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 183/408 (44%), Gaps = 76/408 (18%)

Query: 8   RLSATEIVTILTETEIAVITENDLKNPNPD---FVSDLYTRLLIFLDVLHE--------- 55
           RL   EI   + +  I   T  DL  PNP     V + +  LL  +++ HE         
Sbjct: 33  RLPDKEIAGCINDIGIP-FTAADLIKPNPQQIQMVFEWFAELL--MNITHEAVEPAMRAA 89

Query: 56  -DDQGQLDFAALEQLENPDL-HVRSVQIMKLYSMVKEVVTTVNCPMN-FTLKDLIRPDAT 112
            DD G  DF        PD+    +  +M  +  +++++  + C +N FT  DL +P   
Sbjct: 90  ADDVGG-DF--------PDIVPTDTRNLMGFFVSLRKLM--MECGVNDFTFTDLTKPTHD 138

Query: 113 RTEYFLSAILNFCLYKDTKMNLLRPIAEDL--------TRLD---EQRSELEDKISQLNA 161
           R     S ++NF  +++++     P+ ++          R+D    +  E+E ++ ++  
Sbjct: 139 RLVKIFSYLINFVRFRESQT----PVIDEHFNKSEKTKARIDTLYAENQEMEQRLEEMRR 194

Query: 162 EIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221
            + A NE +      V+E   +  EL+  + +L ++Q  +  TL ++K        +  +
Sbjct: 195 NLRA-NEAQ------VKEKVRRNDELKARLLELRRNQERVAETLERVKADKTRRQTQLEE 247

Query: 222 TEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE--KKSIREEAR-DAEKLAMQSFQEKTTT 278
               +V++ Q+   LR   ++SP  LQ +L E  +  +RE+A+ DA +   ++ Q  + T
Sbjct: 248 KTEKVVRTRQEVEKLRPYAMESPVSLQASLTELSENLLREKAQIDAMEKRARALQTSSDT 307

Query: 279 LEVY------------------QKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK--- 317
             V                   QK   + S+ S   +AI E+ NS + +E+  K L+   
Sbjct: 308 FTVVSNDVQACVKLLEDISVELQKEEDEESRASRNKEAISERGNSVREVEQTEKLLQRQL 367

Query: 318 ARLNDDV-VLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATR 364
           AR N+ +  L K+ + K    Q ++E+L E+Q+QL +ER  K  D  R
Sbjct: 368 ARWNERIETLRKNAQEKAEAAQARMEELREVQKQLREERAEKQRDMER 415

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
255576776	450	kinetochore protein nuf2, putative [Rici	0.982	0.971	0.691	1e-174
224093272	442	predicted protein [Populus trichocarpa]	0.982	0.988	0.679	1e-172
225447975	453	PREDICTED: kinetochore protein Nuf2 [Vit	0.993	0.975	0.654	1e-159
224140705	429	predicted protein [Populus trichocarpa]	0.955	0.990	0.654	1e-157
225430476	453	PREDICTED: probable kinetochore protein	0.995	0.977	0.646	1e-151
147852218	473	hypothetical protein VITISV_036492 [Viti	0.995	0.936	0.618	1e-147
449452094	446	PREDICTED: kinetochore protein Nuf2-like	0.986	0.984	0.583	1e-142
356512606	461	PREDICTED: uncharacterized protein LOC10	0.979	0.945	0.590	1e-140
145336916	440	kinetochore protein Nuf2 [Arabidopsis th	0.984	0.995	0.529	1e-129
357519365	459	hypothetical protein MTR_8g088840 [Medic	0.973	0.943	0.529	1e-124

>gi|255576776|ref|XP_002529275.1| kinetochore protein nuf2, putative [Ricinus communis] gi|223531264|gb|EEF33107.1| kinetochore protein nuf2, putative [Ricinus communis]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 302/437 (69%), Positives = 365/437 (83%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKFDYPRLS  EI TIL E++IA +TEND+KNPNPDF+SD+YTRLLI LD+L+E+ QGQ
Sbjct: 1   MSKFDYPRLSRAEIATILAESQIAAVTENDIKNPNPDFISDIYTRLLIHLDLLNEEGQGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
           ++FAALEQLENPD HV SV+IM ++  ++E+V+ V CP+ FTLKDL+RP   RTE +LSA
Sbjct: 61  VEFAALEQLENPDHHVDSVRIMTMFIRIREMVSLVGCPLKFTLKDLLRPQGDRTELYLSA 120

Query: 121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 180
           ILNFCL+KDTKMNLLR I E+LT LDEQR E EDKISQLNAEIA YN  RE ELP VQEV
Sbjct: 121 ILNFCLHKDTKMNLLRSIGEELTLLDEQRKEWEDKISQLNAEIAEYNVAREMELPFVQEV 180

Query: 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
           DAKVKELRQT+ +LN HQ+SLR +  KLKEK G LD + S+ EFDLVQSVQ+NA+LRSKI
Sbjct: 181 DAKVKELRQTVSELNNHQMSLRASSRKLKEKAGELDGEISKAEFDLVQSVQENANLRSKI 240

Query: 241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
           VQSP+KLQR LEEKKS+ EE ++AE+LAMQSFQEKT  LEVY KTL+K+SK   QMQ I 
Sbjct: 241 VQSPDKLQRALEEKKSVWEEVKNAERLAMQSFQEKTAILEVYSKTLRKISKHFNQMQEIH 300

Query: 301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 360
           E+VNSAKSIEKDYK LKA+L+++ +LDK L+AKL+ERQ K +QLDEL++ LEKE++LK E
Sbjct: 301 EEVNSAKSIEKDYKELKAKLSNEGMLDKKLDAKLVERQAKAQQLDELRKVLEKEKDLKCE 360

Query: 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
           DA R F NVK E+ES+R DLEARQ+KVE +V+EVDAIT KT  VKESGAAK+QEL  K E
Sbjct: 361 DAAREFNNVKSEVESRRVDLEARQRKVEVIVSEVDAITLKTNMVKESGAAKVQELVYKCE 420

Query: 421 EIVEKFQQYTNSIGTLL 437
           +I E+F+QY NS+G ++
Sbjct: 421 QIAEQFEQYRNSMGLVM 437

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093272|ref|XP_002309861.1| predicted protein [Populus trichocarpa] gi|222852764|gb|EEE90311.1| predicted protein [Populus trichocarpa]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/437 (67%), Positives = 367/437 (83%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP LS T++++IL E++IA I E DLKNP PDFV+D+YTRLL++LD+LHE+D+GQ
Sbjct: 1   MSKFEYPMLSRTDMISILAESQIAAIIETDLKNPTPDFVADIYTRLLVYLDLLHEEDEGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
           ++FAALEQLENP  HV S +IM LY  VKEV+T + CP +FTL+DL++P   RT++FLSA
Sbjct: 61  VEFAALEQLENPHYHVGSARIMNLYIKVKEVITMLQCPADFTLRDLLKPQGDRTQFFLSA 120

Query: 121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 180
           ILNFCL+KD+KMN LRPI E+LT LDEQR  LEDKISQLNAEIA YN+ RERELPL QEV
Sbjct: 121 ILNFCLHKDSKMNELRPIGEELTLLDEQRRGLEDKISQLNAEIAEYNDARERELPLAQEV 180

Query: 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
           D KVKELRQ I DLN HQ+SLR +  KLKE++  +D + S+ EFDLVQSVQ+NA+LRSKI
Sbjct: 181 DGKVKELRQEIADLNNHQMSLRASYRKLKERSSEMDGEISRAEFDLVQSVQENANLRSKI 240

Query: 241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
           VQSP+KLQR LEEKKS+REEAR+AE+LAMQSF+ KT  LEVY K LKKMSK   QMQAI 
Sbjct: 241 VQSPDKLQRALEEKKSVREEARNAERLAMQSFEAKTAVLEVYTKALKKMSKHFDQMQAIH 300

Query: 301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 360
           EQVNSAKSIEKDYK+LKA+L+DD ++DKSL+AKL+E Q K +QL+EL++ LEKER++K E
Sbjct: 301 EQVNSAKSIEKDYKALKAKLSDDGLMDKSLDAKLVELQMKAQQLNELKKLLEKERDMKCE 360

Query: 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
           +AT+ +  +K E+ESKR DLEARQ++VEAV++EVDAITSKT  V ESGAAK+Q+L SK E
Sbjct: 361 EATKEYNTIKSEVESKRHDLEARQRRVEAVLSEVDAITSKTNMVNESGAAKVQKLVSKRE 420

Query: 421 EIVEKFQQYTNSIGTLL 437
           EI E+F++Y NSI  LL
Sbjct: 421 EIAEQFKKYKNSIEPLL 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447975|ref|XP_002269064.1| PREDICTED: kinetochore protein Nuf2 [Vitis vinifera] gi|298204517|emb|CBI23792.3| unnamed protein product [Vitis vinifera]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/443 (65%), Positives = 349/443 (78%), Gaps = 1/443 (0%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP +  +EI+ IL E++IA + + DL NPNPDFVSDLYTRLLI LD L ED  GQ
Sbjct: 1   MSKFEYPMIPRSEIIAILNESKIATVYDEDLINPNPDFVSDLYTRLLIHLDSLQEDP-GQ 59

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
           ++FAALE+LENPD H  SV+IM LYS +KE+V +++CP  FTLKDLIRPD  RTE FL  
Sbjct: 60  VEFAALERLENPDWHRDSVRIMNLYSKIKELVASLDCPWKFTLKDLIRPDRDRTEKFLGT 119

Query: 121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 180
           ILNF L+KD+KMN LRPI E+   LDE+R  LED+ISQL+AEI  YNE RER +PLVQE+
Sbjct: 120 ILNFFLHKDSKMNELRPIVEESNLLDEERKLLEDRISQLDAEITDYNEARERAMPLVQEI 179

Query: 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
           + KVK+LRQ I  LN  Q+SLRT+  K+KEK   +DEK S  EF LVQSVQ+NA+LRSKI
Sbjct: 180 EVKVKDLRQAIPSLNNQQMSLRTSFRKMKEKVAEMDEKISSAEFALVQSVQENANLRSKI 239

Query: 241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
           VQSP+KLQRTLEEKKS+R EA++AE+ AMQSFQEK+  +EVY K  KKMSK  AQMQAI 
Sbjct: 240 VQSPDKLQRTLEEKKSVRVEAKNAERSAMQSFQEKSAIVEVYTKAGKKMSKHFAQMQAIQ 299

Query: 301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 360
           EQVNSAK+IEKD K LK +L+++ VLDKS EAKL+ERQ KVEQLDEL++QLEKERN K E
Sbjct: 300 EQVNSAKAIEKDLKVLKTKLSEEGVLDKSFEAKLLERQRKVEQLDELRKQLEKERNFKCE 359

Query: 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
           +A +   NVKL +ESKR++LEARQ+KVEA   EVDA T K   VKESGAAK Q+L  K E
Sbjct: 360 EAAKELNNVKLAVESKRRELEARQRKVEAEAAEVDATTLKINSVKESGAAKQQKLTRKGE 419

Query: 421 EIVEKFQQYTNSIGTLLPVTEIE 443
           EIV++F QY NSIG LLP  ++E
Sbjct: 420 EIVKEFHQYANSIGVLLPRIQVE 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140705|ref|XP_002323719.1| predicted protein [Populus trichocarpa] gi|222866721|gb|EEF03852.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 278/425 (65%), Positives = 342/425 (80%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP L   ++++IL E++IA + ENDLKNP PDFVSD+YTRLL++LD+LHE+D GQ
Sbjct: 1   MSKFEYPILPRADMISILAESQIAAVIENDLKNPTPDFVSDIYTRLLVYLDLLHEEDGGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
           ++FAALEQLENP  HV S + +  Y  +KEV+  + CP  FTLKDL++P A RT++FLSA
Sbjct: 61  VEFAALEQLENPHYHVGSARTVNNYIKIKEVIALLQCPAVFTLKDLLKPQADRTQFFLSA 120

Query: 121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 180
           ILNFCL+KD+KMN LRPI E+L+ LDEQR E +DKISQLNAEIA YN+ RERELPLVQ+V
Sbjct: 121 ILNFCLHKDSKMNELRPIGEELSLLDEQRREFDDKISQLNAEIAEYNDARERELPLVQDV 180

Query: 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
           D KVKELRQ I DLN HQ+S R T  KLKE +  +D + S+ EFDLVQSVQ+N +LRSKI
Sbjct: 181 DGKVKELRQRIGDLNNHQMSQRATYRKLKEMSTEMDGEISRAEFDLVQSVQENVNLRSKI 240

Query: 241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
           VQSP+KLQR LEEKKS+R++AR+AE+LAMQSFQ KT  LEVY K  KKMSK   QMQAI 
Sbjct: 241 VQSPDKLQRALEEKKSVRQDARNAERLAMQSFQAKTDVLEVYTKASKKMSKHFNQMQAIH 300

Query: 301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 360
           EQVNSAKSIEKDYK+LKA+L  D ++DKSL AKL+E Q K +QLDE ++ LEKER+ K E
Sbjct: 301 EQVNSAKSIEKDYKALKAKLGYDELMDKSLGAKLVELQVKAQQLDECKKLLEKERDAKCE 360

Query: 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
           +AT  F N+K E+ES+R DL ARQ+KVE V+T+VDAITSKT  VKESG A++Q+L  K E
Sbjct: 361 EATEEFNNIKSEVESRRHDLGARQRKVEDVLTKVDAITSKTNMVKESGVAEVQKLVHKRE 420

Query: 421 EIVEK 425
           EI E+
Sbjct: 421 EIAEQ 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430476|ref|XP_002283312.1| PREDICTED: probable kinetochore protein NUF2 [Vitis vinifera] gi|296082133|emb|CBI21138.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 287/444 (64%), Positives = 348/444 (78%), Gaps = 1/444 (0%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP L  ++I+ IL E++IA + E++L NPNPDFVSDLYTRLLI LD L ED  GQ
Sbjct: 1   MSKFEYPMLPRSDIIAILNESKIATVYEDNLINPNPDFVSDLYTRLLIHLDSLQEDP-GQ 59

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
           ++FAALEQLENPD H  SV++M LYS +KE+V ++ CP  FTLKDLIRPD  RTE FL  
Sbjct: 60  IEFAALEQLENPDWHRDSVRVMNLYSKIKELVASLECPKKFTLKDLIRPDRDRTERFLGT 119

Query: 121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 180
           ILNF L+KD+KMN LRPI E+LT LDEQR++ +D+ISQL+AEIA  +E RERE PLV+EV
Sbjct: 120 ILNFFLHKDSKMNDLRPIVEELTLLDEQRNQFKDRISQLDAEIADCSEARERERPLVEEV 179

Query: 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
           + KVKELRQTI  LN  Q+SLR +  K+KEK   +DEK S  EF LVQSVQ+NA+LRSKI
Sbjct: 180 EVKVKELRQTIPSLNNQQMSLRASFRKMKEKVTEMDEKISSAEFALVQSVQENANLRSKI 239

Query: 241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
           +QSP+KLQR LEEKKS R E ++AEK AMQSFQEK+  LEVY K  KKMSK  AQMQ I 
Sbjct: 240 IQSPDKLQRALEEKKSDRIEVKNAEKSAMQSFQEKSAILEVYTKAGKKMSKHFAQMQTIQ 299

Query: 301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 360
           EQVNSAK+IEKD K +K +L+++ VL+KSLEAKL+E QGKVEQLD+L++QLEKER+ K E
Sbjct: 300 EQVNSAKAIEKDLKVIKTKLSEEGVLEKSLEAKLVEWQGKVEQLDDLRKQLEKERDFKCE 359

Query: 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
           +A +   NVKL +ES R +LEARQKKVEA   EVD IT K   VKESGAAK QEL SK E
Sbjct: 360 EAAKELNNVKLAVESSRHELEARQKKVEAQAAEVDGITLKINSVKESGAAKQQELISKGE 419

Query: 421 EIVEKFQQYTNSIGTLLPVTEIES 444
           EI+++F  Y NSIG LLP  ++E+
Sbjct: 420 EIMKEFHLYANSIGVLLPRIQVET 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852218|emb|CAN82250.1| hypothetical protein VITISV_036492 [Vitis vinifera]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/464 (61%), Positives = 347/464 (74%), Gaps = 21/464 (4%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSKF+YP L  ++I+ IL E++IA + E++L NPNPDFVSDLYTRLLI LD L ED  GQ
Sbjct: 1   MSKFEYPMLPRSDIIAILNESKIATVYEDNLINPNPDFVSDLYTRLLIHLDSLQEDP-GQ 59

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
           ++FAALEQLENPD H  SV++M LYS +KE+V ++ CP  FTLKDLIRPD  RTE FL  
Sbjct: 60  IEFAALEQLENPDWHRDSVRVMNLYSKIKELVASLECPKKFTLKDLIRPDRDRTERFLGT 119

Query: 121 ILNFCLYK--------------------DTKMNLLRPIAEDLTRLDEQRSELEDKISQLN 160
           ILNF L+K                    D+KMN LRPI E+LT LDEQR++ +D+ISQL+
Sbjct: 120 ILNFFLHKKCKGISPKGPMTKTHKEETKDSKMNDLRPIVEELTLLDEQRNQFKDRISQLD 179

Query: 161 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220
           AEIA  +E RERE PLV+EV+ KVKELRQTI  LN  Q+SLR +  K+KEK   +DEK S
Sbjct: 180 AEIADCSEARERERPLVEEVEVKVKELRQTIPSLNNQQMSLRASFRKMKEKVTEMDEKIS 239

Query: 221 QTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLE 280
             EF LVQSVQ+NA+LRSKI+QSP+KLQR LEEKKS R E ++AEK AMQSFQEK+  LE
Sbjct: 240 SAEFALVQSVQENANLRSKIIQSPDKLQRALEEKKSDRIEVKNAEKSAMQSFQEKSAILE 299

Query: 281 VYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGK 340
           VY K  KKMSK  AQMQ I EQVNSAK+IEKD K +K +L+++ VL KSLEAKL+E QGK
Sbjct: 300 VYTKAGKKMSKHFAQMQTIQEQVNSAKAIEKDLKVIKTKLSEEGVLXKSLEAKLVEWQGK 359

Query: 341 VEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 400
           VEQLD+L++QLEKER+ K E+A +   NVKL +ES R +LEARQKKVEA   EVD IT K
Sbjct: 360 VEQLDDLRKQLEKERDFKCEEAAKELNNVKLAVESSRHELEARQKKVEAQAAEVDGITLK 419

Query: 401 TKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIES 444
              VKESGAAK QEL SK EEI+++F  Y NSIG LLP  ++E+
Sbjct: 420 INSVKESGAAKQQELISKGEEIMKEFHLYANSIGVLLPRIQVET 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452094|ref|XP_004143795.1| PREDICTED: kinetochore protein Nuf2-like [Cucumis sativus]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 256/439 (58%), Positives = 331/439 (75%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MSK+++PRL   +IV +L + +IA +TE DL  P+PD VSDLYT L+I+LD+LHE+DQGQ
Sbjct: 1   MSKYEFPRLPRADIVLLLADNQIAAVTERDLLQPSPDLVSDLYTHLMIYLDLLHEEDQGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
           ++FAAL+QLENPDLH+ SV  MKL++ +K  + +++CP  FTLKDLI+P+  RTE FLSA
Sbjct: 61  IEFAALDQLENPDLHMVSVPTMKLHNKIKHFIASLDCPKKFTLKDLIKPETDRTEIFLSA 120

Query: 121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 180
           ILNF ++KD KMN   P+  +L    +Q+ E E K SQLNAEI  YNE RERE+P VQE+
Sbjct: 121 ILNFGIHKDAKMNFHAPVMNELDTFADQQREWEVKTSQLNAEITEYNEAREREMPFVQEI 180

Query: 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
           DAKVKEL QTI  LN  QVSLR ++ KLKEK G +DEK S  EF LVQSVQ+NA+LRSKI
Sbjct: 181 DAKVKELHQTIGGLNNQQVSLRASIRKLKEKAGEMDEKISNAEFLLVQSVQENANLRSKI 240

Query: 241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
           VQSP+KLQR LEEKK  REEA++AEKLAMQ+ QEKT  +EVY K  KKM K  + MQ I 
Sbjct: 241 VQSPDKLQRALEEKKLAREEAKNAEKLAMQACQEKTGIVEVYSKVSKKMLKHLSLMQTIH 300

Query: 301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 360
           EQVNSAKS+E+++K+LK +L+D+ V DKSL+ KL+E Q KV QL +L +Q EKER++  E
Sbjct: 301 EQVNSAKSVEREFKALKVKLSDEEVQDKSLQVKLVELQAKVHQLKDLVRQTEKERDVTCE 360

Query: 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
           +AT+    V+ ++ES R DLE RQ+ VEAV  EVD +TSKT  +++S   K QEL +K E
Sbjct: 361 EATKDLIAVRSQVESLRHDLEQRQRNVEAVFMEVDVLTSKTNSIRQSSVLKQQELLNKCE 420

Query: 421 EIVEKFQQYTNSIGTLLPV 439
            I+++F QYTN +G L+ V
Sbjct: 421 SIIKEFHQYTNLVGALMEV 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512606|ref|XP_003525009.1| PREDICTED: uncharacterized protein LOC100815227 [Glycine max]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/437 (59%), Positives = 333/437 (76%), Gaps = 1/437 (0%)

Query: 2   SKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQL 61
           S ++YPRL   EIVTIL + +IA +TE D  NPNPDF+SDLYTR+LI LD+L E+D  QL
Sbjct: 4   SNYEYPRLRRPEIVTILAQLQIANVTEQDFTNPNPDFISDLYTRVLIHLDILLEEDNEQL 63

Query: 62  DFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAI 121
           +F ALE LENPD H+ SV+ +KLY+ + EV+TT+ CP  FTL DL+ PD  RT+ FL ++
Sbjct: 64  EFHALEHLENPDFHLDSVRAVKLYNQINEVLTTLECPRKFTLADLLMPDPHRTDLFLGSL 123

Query: 122 LNFCLYKDTKMNLLRPIAEDLTRLDEQRSELE-DKISQLNAEIAAYNEVRERELPLVQEV 180
           LNFCL +D +MN +  I E++  L+ QR+ELE ++I QL AEI+  NE +ERE+PLV+EV
Sbjct: 124 LNFCLDRDARMNSVSEIVEEVNALEAQRTELEENRILQLKAEISECNEAKEREMPLVEEV 183

Query: 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
           +AKVKEL+QTI  LN +Q SLR+TL KLKEKTG  DEK S  EF LVQ+VQ+NA+LRSKI
Sbjct: 184 EAKVKELKQTIAVLNSNQSSLRSTLRKLKEKTGETDEKISNAEFTLVQNVQENANLRSKI 243

Query: 241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
            QSP+K+QR LEEKK  REEAR+AE+LAMQ+F EKT  +EV+ K  KKMSK +  MQ I 
Sbjct: 244 SQSPDKVQRALEEKKLAREEARNAERLAMQAFHEKTALVEVFSKVYKKMSKHNKLMQDIQ 303

Query: 301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 360
           EQVNSAKSIEKD K+LKA+L+D+ +L+KSLEAKL+E+Q KVEQ++E ++QLEKE N+  E
Sbjct: 304 EQVNSAKSIEKDLKALKAKLSDEEILEKSLEAKLVEKQSKVEQMEESRKQLEKESNIMWE 363

Query: 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
           +AT+   + K ++ESKR   E RQK VEAV++EVDAI+SK   VKE+GA K+  L  K E
Sbjct: 364 EATKYLSSTKSDVESKRSATETRQKNVEAVLSEVDAISSKIISVKEAGAVKVALLVRKCE 423

Query: 421 EIVEKFQQYTNSIGTLL 437
           E+VE F  Y N I  ++
Sbjct: 424 ELVEAFHNYANPIARVI 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336916|ref|NP_176296.2| kinetochore protein Nuf2 [Arabidopsis thaliana] gi|19423962|gb|AAL87331.1| unknown protein [Arabidopsis thaliana] gi|22136892|gb|AAM91790.1| unknown protein [Arabidopsis thaliana] gi|332195644|gb|AEE33765.1| kinetochore protein Nuf2 [Arabidopsis thaliana]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/438 (52%), Positives = 337/438 (76%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MS ++YPRLS ++I+T L + +IA +TE DLK P  DFVS+LYTR+LI+LD L E+++GQ
Sbjct: 1   MSAYEYPRLSRSDIITALKDAQIASVTETDLKTPTSDFVSELYTRILIYLDALDEEEKGQ 60

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
           +DF ALEQLENPD H  S+Q MKLY  VK+++  ++CP+  + KDL+RP+++RTE+F+SA
Sbjct: 61  VDFEALEQLENPDHHATSMQAMKLYCKVKDMLEMLDCPLPISFKDLLRPESSRTEFFISA 120

Query: 121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 180
           +LN+ LYKD+KM+L+RP AE+L  LDEQR + E K++QLNAEI  ++E  ER+LP VQE+
Sbjct: 121 LLNYGLYKDSKMDLIRPKAEELGLLDEQRKQCEAKVAQLNAEIGEFDEAVERDLPFVQEL 180

Query: 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
           +A +++L + I +LN  Q+SLR T  K++EK+  +D + S+ EFDLV++VQ+NA+LRS+I
Sbjct: 181 EANIEQLNKKILELNNQQMSLRATFQKMREKSTQMDNEISKAEFDLVETVQENANLRSQI 240

Query: 241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
           VQSP+KLQ  LEEKK +  E + AE+ AM +FQEK   LEV++K LKK+ K S+Q+Q I 
Sbjct: 241 VQSPDKLQGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKALKKILKSSSQLQLIN 300

Query: 301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 360
           EQV +AK++EK++K+LK +L++D V  KSLEAK++ER+  VEQL+E  +QLEKE+ +  +
Sbjct: 301 EQVTNAKTVEKEFKALKDKLSEDGVAYKSLEAKVVERERIVEQLNESLKQLEKEKAVMFD 360

Query: 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
           D T+    +K+E+ES+R++LE RQ  VE+VV  VD  T+KT  V++SG AK+++LA+K E
Sbjct: 361 DWTKQLNELKVEVESRRRELETRQTNVESVVAMVDDNTAKTNQVRQSGEAKVKKLAAKYE 420

Query: 421 EIVEKFQQYTNSIGTLLP 438
           EIV++F +YT S    LP
Sbjct: 421 EIVKQFHEYTVSFDAFLP 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519365|ref|XP_003629971.1| hypothetical protein MTR_8g088840 [Medicago truncatula] gi|355523993|gb|AET04447.1| hypothetical protein MTR_8g088840 [Medicago truncatula]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/436 (52%), Positives = 312/436 (71%), Gaps = 3/436 (0%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
           MS ++YPRL   EIV +L   +IA +TEND+ NP    V DLYTR+L +LD LH++D GQ
Sbjct: 3   MSNYEYPRLRRPEIVQLLNNFQIATVTENDISNPRTGVVLDLYTRILNYLDFLHDEDNGQ 62

Query: 61  LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLK--DLIRPDATRTEYFL 118
           LDF ALE LENPDLHV S+  +KLY+ +KE++  + CP  +T    DL++PD  RTE+FL
Sbjct: 63  LDFDALEHLENPDLHVGSIHAIKLYNKIKEMLNLLECPKKYTFNFADLLKPDPHRTEFFL 122

Query: 119 SAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELE-DKISQLNAEIAAYNEVRERELPLV 177
            A+LNFCL +D ++N +  I ++   L+++  E+E + I+QL   IA  NE RERELP V
Sbjct: 123 GALLNFCLDRDGRLNAISEIVDEFNALEQKIVEIEENNITQLKLAIAECNEARERELPSV 182

Query: 178 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237
           QEVDAKVKELRQTI +LN  Q+SLR+T+ KLKEKT  +D+K S  E+ LVQ+VQ++ +L 
Sbjct: 183 QEVDAKVKELRQTIANLNNKQMSLRSTIKKLKEKTVEMDDKISDAEYKLVQNVQEHGNLL 242

Query: 238 SKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQ 297
           SKI QSP+K+QR LEEKK  REEAR+AE+LAM +F EKT  +EV  K  KKMSK   Q+Q
Sbjct: 243 SKIAQSPDKVQRALEEKKLAREEARNAERLAMHNFHEKTALVEVISKVHKKMSKHYKQVQ 302

Query: 298 AILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL 357
              EQVNSAK+IEKD K+LKA+L D+ VL+KSLEAKL+E+Q KVE  + L +Q EKE   
Sbjct: 303 VTQEQVNSAKTIEKDLKTLKAKLGDEEVLEKSLEAKLVEKQTKVEHTEGLNKQSEKECGF 362

Query: 358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS 417
             ++ T+   ++K E ESKR+D+E RQ+ VEA++++VD I S+   VKES   K+ ++  
Sbjct: 363 MMDEGTKYLSSIKSEAESKRRDIETRQRNVEAILSKVDVINSRETSVKESATLKVDQMEI 422

Query: 418 KAEEIVEKFQQYTNSI 433
           K  E+ E F++Y+NS 
Sbjct: 423 KCSELFEVFRKYSNSF 438

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2206071	440	AT1G61000 [Arabidopsis thalian	0.984	0.995	0.493	2.6e-111
ZFIN|ZDB-GENE-040426-1121	454	nuf2 "NUF2, NDC80 kinetochore	0.905	0.887	0.206	2.1e-17
POMBASE|SPAC27F1.04c	441	nuf2 "spindle pole body protei	0.862	0.870	0.197	1.4e-15
UNIPROTKB|Q76I90	469	NUF2 "Kinetochore protein Nuf2	0.768	0.729	0.202	2.4e-13
RGD|1307952	464	Nuf2 "NUF2, NDC80 kinetochore	0.692	0.663	0.261	3e-13
UNIPROTKB|Q9BZD4	464	NUF2 "Kinetochore protein Nuf2	0.842	0.808	0.226	1.1e-11
MGI|MGI:1914227	463	Nuf2 "NUF2, NDC80 kinetochore	0.703	0.676	0.237	1.5e-11
UNIPROTKB|F1S216	464	NUF2 "Uncharacterized protein"	0.847	0.812	0.216	1.9e-11
UNIPROTKB|A6H7B3	465	NUF2 "Uncharacterized protein"	0.847	0.810	0.216	2.5e-11
ASPGD|ASPL0000059049	463	AN0166 [Emericella nidulans (t	0.880	0.846	0.228	1.5e-10

TAIR|locus:2206071 AT1G61000 [Arabidopsis thaliana (taxid:3702)]

 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 216/438 (49%), Positives = 313/438 (71%)

Query:     1 MSKFDYPRLSXXXXXXXXXXXXXXXXXXNDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQ 60
             MS ++YPRLS                   DLK P  DFVS+LYTR+LI+LD L E+++GQ
Sbjct:     1 MSAYEYPRLSRSDIITALKDAQIASVTETDLKTPTSDFVSELYTRILIYLDALDEEEKGQ 60

Query:    61 LDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120
             +DF ALEQLENPD H  S+Q MKLY  VK+++  ++CP+  + KDL+RP+++RTE+F+SA
Sbjct:    61 VDFEALEQLENPDHHATSMQAMKLYCKVKDMLEMLDCPLPISFKDLLRPESSRTEFFISA 120

Query:   121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 180
             +LN+ LYKD+KM+L+RP AE+L  LDEQR + E K++QLNAEI  ++E  ER+LP VQE+
Sbjct:   121 LLNYGLYKDSKMDLIRPKAEELGLLDEQRKQCEAKVAQLNAEIGEFDEAVERDLPFVQEL 180

Query:   181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240
             +A +++L + I +LN  Q+SLR T  K++EK+  +D + S+ EFDLV++VQ+NA+LRS+I
Sbjct:   181 EANIEQLNKKILELNNQQMSLRATFQKMREKSTQMDNEISKAEFDLVETVQENANLRSQI 240

Query:   241 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 300
             VQSP+KLQ  LEEKK +  E + AE+ AM +FQEK   LEV++K LKK+ K S+Q+Q I 
Sbjct:   241 VQSPDKLQGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKALKKILKSSSQLQLIN 300

Query:   301 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSE 360
             EQV +AK++EK++K+LK +L++D V  KSLEAK++ER+  V             + +  +
Sbjct:   301 EQVTNAKTVEKEFKALKDKLSEDGVAYKSLEAKVVERERIVEQLNESLKQLEKEKAVMFD 360

Query:   361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420
             D T+    +K+E+ES+R++LE RQ  VE+VV  VD  T+KT  V++SG AK+++LA+K E
Sbjct:   361 DWTKQLNELKVEVESRRRELETRQTNVESVVAMVDDNTAKTNQVRQSGEAKVKKLAAKYE 420

Query:   421 EIVEKFQQYTNSIGTLLP 438
             EIV++F +YT S    LP
Sbjct:   421 EIVKQFHEYTVSFDAFLP 438

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007067 "mitosis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

ZFIN|ZDB-GENE-040426-1121 nuf2 "NUF2, NDC80 kinetochore complex component, homolog" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 88/427 (20%), Positives = 190/427 (44%)

Query:    29 NDLK-NPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSM 87
             NDL   P P+ V  LY R+L  L     +    +  +  E ++ P L+     IM +Y  
Sbjct:    34 NDLTPTPKPESVQRLYMRILQLLFRFRPECHYTVPLS--ENIQYPMLYESFAPIMSVYMR 91

Query:    88 VKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDE 147
             + + +       +F+L DL+ P   RT   LSAI NF  ++  ++        ++T   +
Sbjct:    92 MCQFLPVCRV-YDFSLSDLLNPKTKRTITILSAIQNFLHFRKQRL--------EITAAHQ 142

Query:   148 Q--RSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN---KHQVSLR 202
             Q  R+++ D++     EI    +  E+   +  E  A+ KEL   + +L+   +H+    
Sbjct:   143 QSFRADM-DRLQAYTREIKEAEKKIEKLTTIPPEQQAEAKELASALAELSTNTQHEYQDV 201

Query:   203 TTLNK----LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258
             + +N+     K +   L +K +Q + ++     + + L+S+IV+SPE+L+  +E  +   
Sbjct:   202 SAINEKVAQFKTEIAELSQKLTQRKVEVATLKDEISKLKSQIVESPEELKNEMERMRETA 261

Query:   259 EEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKA 318
             +  + +++LA +   E    ++   +   ++     Q+Q +   ++  K  +++ +SL+ 
Sbjct:   262 KNIKMSKELADERLVELQMLVQCASQVEAEIQILLKQLQDLQSSMSKTKQRKEEVQSLEV 321

Query:   319 RLNDDVVLD-KSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKR 377
              +N+ +  + KSL ++  + +  +             R  K E   +  +N+  + +   
Sbjct:   322 -MNESLQKELKSLSSEEAQLKRALTMKLDKESKQQIRRQKKKEVKDQQVKNIYGQYDKMH 380

Query:   378 QDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 437
             Q  +   KK+E    E      K + ++E+   + Q+     E ++   +QY   I  +L
Sbjct:   381 QKRQEIVKKIEECNRETKQFKEKMQALRENCNQRTQKAQEIYERLLTTLEQYHKRIEKIL 440

Query:   438 PVTEIES 444
               T  ++
Sbjct:   441 VETNADA 447

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007507 "heart development" evidence=IMP

GO:0031262 "Ndc80 complex" evidence=ISS

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

POMBASE|SPAC27F1.04c nuf2 "spindle pole body protein Nuf2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 221 (82.9 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 82/416 (19%), Positives = 193/416 (46%)

Query:    30 DLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMV 88
             +L  P    V  LY   L +F+ +  ++ + +++ +  + +EN ++   S++    Y ++
Sbjct:    30 ELDQPTSKAVIPLYEEFLDLFMGLTRQNLEEKVN-SLQDSVENFEIIHESLRFTVFYQIL 88

Query:    89 KEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLL-------RPIAED 141
              + +  + C  +FT++DL++PD  R +  LSA++NF   ++ ++            + E 
Sbjct:    89 SQFMQNI-CFHDFTIQDLLKPDRNRLQLILSAVINFAKLREERLQQFDDDIQKRESLLET 147

Query:   142 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSL 201
              T LD QR +LE+K+      + + +   E E  ++++ + + +E+ Q++ +  +    +
Sbjct:   148 YTLLDAQRKDLEEKV------LLSQDRKLESEA-IIKQNEERNEEMFQSLIEDKRLCSQV 200

Query:   202 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK-SIREE 260
             RT  ++++ +   L  ++   +  +  ++++   L+S IV SPEKL+  + +    I+ +
Sbjct:   201 RTEYDRIRMEASELKIRYHNVDSLMASTLEEIEKLQSSIVHSPEKLKGKIADTSLRIQND 260

Query:   261 ARDAEKLAMQS--FQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKA 318
                  +L  +S     K  +L++ +  L    K   +    L+++  A  +     S   
Sbjct:   261 RSQQVELDKKSKILHTKLNSLQLIEGDLNACLKVLEECLVELDKLEHATVL----LSTNQ 316

Query:   319 RLNDDVVLDKS-LEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKR 377
              L D + ++K  LE +  +   ++             RN K E A +  +N++ E +   
Sbjct:   317 ELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVIT 376

Query:   378 QDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 433
             Q+   R KK++    E +   +  +  ++  A   +EL S+   I  +F++  + +
Sbjct:   377 QE---RNKKIQ----ETEKKNAMIEMTEQKIAGMREELESQISSITMEFEKLKSHV 425

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IMP

GO:0031262 "Ndc80 complex" evidence=TAS

GO:0031617 "NMS complex" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0044732 "mitotic spindle pole body" evidence=IDA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IMP

UNIPROTKB|Q76I90 NUF2 "Kinetochore protein Nuf2" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 74/366 (20%), Positives = 164/366 (44%)

Query:    72 PDLHVRSVQIMKLYSMVKEVVTTVNCPMN-FTLKDLIRPDATRTEYFLSAILNFCLYKDT 130
             P +    + +  LY  ++  +    C +N F + D+I P A RT  FLS ILNF  +++ 
Sbjct:    76 PQIFEGFLPVCNLYIHMERFLPV--CRVNDFQMSDVINPKAKRTARFLSGILNFVHFREC 133

Query:   131 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQT 190
             +      +  +     E+  +LE    +L  ++   N V   +    +++   ++EL Q 
Sbjct:   134 RREAYLELQLNYKSAMEKHQQLETANQELEMKLEKLNTVPVEQQAEFKQLSDDIQELEQL 193

Query:   191 IQ-DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR 249
             +  D  +   +L+  +++ K        K ++ +  +    ++   L+SKIV+SPE+L+ 
Sbjct:   194 LSHDYRRKTAALQEVISQKKSDITERTRKLNELKVTMATLKEEQEQLKSKIVESPEELKN 253

Query:   250 TLEEKKSIREEARDAEKLAMQSFQEKTTTLEVY-------QKTLKKMSKQSAQMQAILEQ 302
               E  K   ++ + +++  ++ ++     +EV        Q   KKM +Q+A ++ +   
Sbjct:   254 YKELMKETVKKLKKSKQEVIEKYEGYRDLVEVLPSCQLEVQLYQKKMERQAANVERLASV 313

Query:   303 VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDA 362
             ++  +++E   +S +  L      + SL+  +  +  ++                K ED 
Sbjct:   314 LSEVRNLEDQLESAQIELKKGKTDEMSLKRLVTAKHERLSTAEIRIKK-------KREDV 366

Query:   363 TRAFENVKLEMESKRQDLEAR-QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEE 421
              + +++   E  ++ Q+       KV A+  E+  +  K + + ES  A+ +E+  KA+E
Sbjct:   367 EQ-YKHTVFEYFNRVQEKRGVVYDKVTAIQKEIQQMRFKIQQLNES--AEEEEM--KAKE 421

Query:   422 IVEKFQ 427
             I +  +
Sbjct:   422 IYQNLK 427

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031262 "Ndc80 complex" evidence=ISS

RGD|1307952 Nuf2 "NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 88/337 (26%), Positives = 156/337 (46%)

Query:    97 CPMN-FTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDK 155
             C +N F + D++ P A RT  FLS I+NF  +++T    L    E L    + +S + DK
Sbjct:    99 CRVNDFEIADILYPKANRTSRFLSGIINFIHFRET---CLEKYEEFLL---QNKSSV-DK 151

Query:   156 ISQL-NAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS--LRTTLNKLKEKT 212
             I QL NA   A  ++ +     V+E + + K+L+  IQ+L +H ++   R     L+E+ 
Sbjct:   152 IQQLSNAHQEALMKLEKLNSVPVEEQE-EFKQLKDDIQEL-QHLLNQDFRQKTTLLQERY 209

Query:   213 GALDEKFSQ-----TEFDL-VQSVQQNAD-LRSKIVQSPEKLQRTLEEKKSIREEARDAE 265
               +   FS+      E  L V S+++  D L+SKIV SPEKL+   E+ K   ++ R A 
Sbjct:   210 TKMKSDFSEKTKHVNELKLSVVSLKEVQDSLKSKIVDSPEKLKNYKEKMKDTVQKLRSAR 269

Query:   266 KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVV 325
             +  M+ +     +++       ++     + Q + +      SI K+  +L+ +++ D  
Sbjct:   270 EEVMEKYDIYRDSVDCLPSCQLEVQLYQKKSQDLADNREKLSSILKESLNLEGQIDSD-- 327

Query:   326 LDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQDLEARQK 385
                 L+ KL   +  +                K     +  E+VK    +  +D    Q+
Sbjct:   328 -SSELK-KLKTEENSLIRLMTLKKERLATMQFK---INKKQEDVKQYKRTMIEDCNKVQE 382

Query:   386 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEI 422
             K +AV  +V AI      +K SG  +L++ A K E++
Sbjct:   383 KRDAVCEQVTAINQDIHKIK-SGIQQLRD-AEKREKL 417

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0031262 "Ndc80 complex" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q9BZD4 NUF2 "Kinetochore protein Nuf2" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 96/423 (22%), Positives = 186/423 (43%)

Query:    29 NDL-KNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSM 87
             NDL  NP P+ +  +Y R L  +  +  +    +   +  ++  P L    +    L + 
Sbjct:    34 NDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNS--EVMYPHLMEGFLPFSNLVTH 91

Query:    88 VKEVVTTVNCPMN-FTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLD 146
             +   +    C +N F   D++ P A RT  FLS I+NF  +++          E      
Sbjct:    92 LDSFLPI--CRVNDFETADILCPKAKRTSRFLSGIINFIHFREA-------CRETYMEFL 142

Query:   147 EQRSELEDKISQLNA--EIAAYNEVRERELPLVQEVDAK-----VKELRQTI-QDLNKHQ 198
              Q     DK+ QLNA  + A     R   +P+ ++ + K     ++EL+Q++ QD ++  
Sbjct:   143 WQYKSSADKMQQLNAAHQEALMKLERLDSVPVEEQEEFKQLSDGIQELQQSLNQDFHQKT 202

Query:   199 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258
             + L+   ++ K       ++ ++ +  +V   +    L++KIV SPEKL+   E+ K   
Sbjct:   203 IVLQEGNSQKKSNISEKTKRLNELKLSVVSLKEIQESLKTKIVDSPEKLKNYKEKMKDTV 262

Query:   259 EEARDAEKLAMQSFQE--------KTTTLEV--YQKTLKKMSKQSAQMQAIL-EQVNSAK 307
             ++ ++A +  ++ ++          +  LEV  YQK ++ +S    ++ +IL E +N   
Sbjct:   263 QKLKNARQEVVEKYEIYGDSVDCLPSCQLEVQLYQKKIQDLSDNREKLASILKESLNLED 322

Query:   308 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFE 367
              IE D   LK +L  +   + S +  +I ++ K+              N K ED  + ++
Sbjct:   323 QIESDESELK-KLKTE---ENSFKRLMIVKKEKLATAQFKI-------NKKHEDV-KQYK 370

Query:   368 NVKLEMESKRQDLE-ARQKKVEAVVTEVDAIT---SKTKFVKESGAAKLQELASKAEEIV 423
                +E  +K Q+   A  ++V  +  E+  I     + K   E    K QE+    +  +
Sbjct:   371 RTVIEDCNKVQEKRGAVYERVTTINQEIQKIKLGIQQLKDAAEREKLKSQEIFLNLKTAL 430

Query:   424 EKF 426
             EK+
Sbjct:   431 EKY 433

GO:0051301 "cell division" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=NAS

GO:0007059 "chromosome segregation" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0031262 "Ndc80 complex" evidence=IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1914227 Nuf2 "NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 83/349 (23%), Positives = 158/349 (45%)

Query:    97 CPMN-FTLKDLIRPDATRTEYFLSAILNFCLYKDTKMN----LLRPIAEDLTRLDEQRSE 151
             C +N F + D++ P   RT  FLS I+NF  +++T +      L      + R+ +  + 
Sbjct:    99 CRVNDFEIVDILNPRTNRTSRFLSGIINFIHFRETCLEKCEEFLLQNKSSMVRMQQLSNV 158

Query:   152 LED---KISQLNAEIAAYNEVRERELPLVQEVDAKV-KELRQTIQDLNKHQVSLRTTLNK 207
              ++   K+ +LN   A   E  ++ +  +QE+   + +E RQ    L +    +++ ++ 
Sbjct:   159 HQEALMKLEKLNTVPAEEREEFKQFMDDIQELQHLLNEEFRQKTTLLQEEYAKMKSDIS- 217

Query:   208 LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKL 267
               EKT  L+E+    +  LV   +   +L+SKIV SPEKL+   ++ K   ++ R A + 
Sbjct:   218 --EKTKHLNEQ----KLSLVSLKEVEDNLKSKIVDSPEKLKNYKDKMKGTVQKLRSAREK 271

Query:   268 AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS---AKSIEKDYKSLKARLN--D 322
              M+ +       ++Y+ ++  +   S Q++  L Q  S   A + EK    LK  LN  D
Sbjct:   272 VMEQY-------DIYRDSVDCLP--SCQLEVQLYQKKSQDLADNREKLSSLLKESLNLED 322

Query:   323 DVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQDLEA 382
              +  D S   KL   +  +                K     +  E+VK   ++  +D   
Sbjct:   323 QIESDSSELKKLKTEENSLIRMTTVKKEKLATARFK---INKKQEDVKHYKQAMIEDCNK 379

Query:   383 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTN 431
              Q+K +AV  +V  +  +   +K S   +L++  +K  EI++  + + N
Sbjct:   380 VQEKRDAVCEQVTTVNQEIHKIK-SAIQQLRD--TKKREILKSQEIFVN 425

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=ISO

GO:0031262 "Ndc80 complex" evidence=ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|F1S216 NUF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 185 (70.2 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 92/425 (21%), Positives = 190/425 (44%)

Query:    29 NDLK-NPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSM 87
             NDL  NP P+ +  +Y R L  +  +  +    +   +  ++  P +    + +  L+  
Sbjct:    34 NDLSPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNS--EVTYPHIMEGFLPVSNLFIH 91

Query:    88 VKEVVTTVNCPMN-FTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLD 146
             +   +    C +N F + D++ P A RT  FLS I+NF  +++      R    +   L 
Sbjct:    92 LDSFLPI--CRVNDFEIADILYPKAKRTSRFLSGIINFIHFREA----CRETYMEF--LW 143

Query:   147 EQRSELEDKISQLNA--EIAAYNEVRERELPLVQEVDAK-----VKELRQTI-QDLNKHQ 198
             + +S + DK+ QLN   + A     R   +P+ ++ + K     ++EL+Q++ Q+  +  
Sbjct:   144 QYKSSV-DKMQQLNTAHQEALMKLERLDSVPVEEQAEFKQLSDDIQELQQSLNQEFRQKT 202

Query:   199 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258
             + L+   ++ K       +  ++ +  +V   +    L++KIV SPEKL+   E+ K   
Sbjct:   203 IVLQEGNSQKKSDISEKTKHLNELKLSVVSLKEVQESLKTKIVDSPEKLKNYKEKMKDTV 262

Query:   259 EEARDAEKLAMQSFQE--------KTTTLEV--YQKTLKKMSKQSAQMQAIL-EQVNSAK 307
             ++ +++ +  M+ ++          +  LEV  YQK ++ ++    ++  +L E +N   
Sbjct:   263 QKLKNSRQEVMEKYEIYRDSVDCLPSCQLEVQLYQKKIQDLADNREKLTTVLKESLNLED 322

Query:   308 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFE 367
              IE D   LK +L  +   + S +  +I ++ K+              N K ED  + ++
Sbjct:   323 QIESDESELK-KLKTE---ENSFKRLMIVKKEKLATAQFRI-------NKKHEDV-KQYK 370

Query:   368 NVKLEMESKRQDLE-ARQKKVEAVVTEVDAIT---SKTKFVKESGAAKLQELASKAEEIV 423
                +E  +K Q+   A  ++V  +  E+  I     + K   E    K QE+    +  +
Sbjct:   371 RTVIEDCNKAQEKRGAVYEQVTTINQEIQKIKFGIQQLKDAAEREKLKSQEIFLSLKAAL 430

Query:   424 EKFQQ 428
             EK+ +
Sbjct:   431 EKYHE 435

GO:0031262 "Ndc80 complex" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|A6H7B3 NUF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 92/425 (21%), Positives = 192/425 (45%)

Query:    29 NDLK-NPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSM 87
             NDL  NP P+ +  +Y R L  +  +  +    +   +  ++  P +    + +  L+  
Sbjct:    34 NDLSPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNS--EVMYPHIMEGFLPVSNLFIH 91

Query:    88 VKEVVTTVNCPMN-FTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLD 146
             +   +    C +N F + D++ P A RT  FLS I+NF  +++      R    +   L 
Sbjct:    92 LDSFLPI--CRVNDFEIADILYPKAKRTTRFLSGIINFIHFREA----CRETYMEF--LW 143

Query:   147 EQRSELEDKISQLNA--EIAAYNEVRERELPLVQEVDAK-----VKELRQTI-QDLNKHQ 198
             + +S + DK+ QLN   + A     R   +P+ ++ + K     ++EL+Q++ Q+  +  
Sbjct:   144 QYKSSV-DKMQQLNTAHQEALMKLERLDSVPVEEQAEFKQLSDDIQELQQSLNQEFRQKT 202

Query:   199 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258
             + L+   ++ K       ++ ++ +  +V   +   +L++KIV SPEK++   E+ K   
Sbjct:   203 IVLQEGNSQKKSDISEKTKRLNELKLSVVSLKEIQENLKTKIVDSPEKVKNYKEKMKDTV 262

Query:   259 EEARDAEKLAMQSFQE--------KTTTLEV--YQKTLKKMSKQSAQMQAIL-EQVNSAK 307
             ++ +++ +  M+ ++          +  LEV  YQK ++ ++    ++  IL E +N   
Sbjct:   263 QKLKNSRQEVMEKYEIYRDSVDCLPSCQLEVQLYQKKIQDLADNREKLTTILKESLNLED 322

Query:   308 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFE 367
              IE D   LK +L  +   + S +  +I ++ K+              N K ED  + ++
Sbjct:   323 QIESDESELK-KLKTE---ENSFKRLMIAKKEKLATAQFRI-------NKKHEDV-KQYK 370

Query:   368 NVKLEMESKRQDLE-ARQKKVEAVVTEVDAIT---SKTKFVKESGAAKLQELASKAEEIV 423
                +E  +K Q+   A  ++V  +  E+  I     + K   E    K QE+    +  +
Sbjct:   371 RTVIEDCNKVQEKRGAVYERVTTINQEIQKIKFGIQQLKDAAEREKLKSQEIFLSLKAAL 430

Query:   424 EKFQQ 428
             EK+ +
Sbjct:   431 EKYHE 435

GO:0031262 "Ndc80 complex" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

ASPGD|ASPL0000059049 AN0166 [Emericella nidulans (taxid:162425)]

 Score = 177 (67.4 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 99/433 (22%), Positives = 187/433 (43%)

Query:    30 DLKNPNPD---FVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLEN-PDLHVRSVQ-IMKL 84
             DL  PNP     V + +  LL  ++   E  +  +  AA +   + PD+     + +M  
Sbjct:    54 DLIKPNPQQVQMVLEWFAELL--MNTTRETVEPAMRAAADDICGDFPDIVPTDTRNLMGF 111

Query:    85 YSMVKEVVTTVNCPMN-FTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLT 143
             +  ++ ++    C +N FT  DL +P   R     S ++NF  +++++  +   I E   
Sbjct:   112 FVNMRRLMA--ECGVNDFTFTDLTKPTHDRLVKIFSYLINFVRFRESQTAV---IDEHFN 166

Query:   144 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQ-EVDAKVK---ELRQTIQDLNKHQV 199
             + ++ +  +E   ++ N E+    E   R L   + EV  KV+   EL+  +++L + Q 
Sbjct:   167 KTEKTKQRIETLYTE-NQEMEQRLEEMRRVLKANEAEVKEKVRRNDELKSRLRELGRTQE 225

Query:   200 SLRTTLNKLK-EKT---GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK 255
              +  TL ++K EK      L EK  +T    V++ Q+   LR  +++SP  LQ +L E  
Sbjct:   226 KVAETLERVKAEKARQQNLLKEKMERT----VRTRQEVEKLRPYVMESPASLQSSLTELS 281

Query:   256 SIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKS 315
                 E+   EK  + + +++   L+    T   +S        +LE +      E+D +S
Sbjct:   282 ----ESLLREKNQIDAMEKRARALQTSSDTFTVVSNDVQACIKLLEDIAVELQKEEDEES 337

Query:   316 LKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMES 375
               +R N + + ++    + +E+  K+              N + E A R   + K ++  
Sbjct:   338 RASR-NKEAISERGNNVREVEQTEKLLQRQLARW------NERIE-ALRNTAHEKAQVAQ 389

Query:   376 KR-QDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE-EIVEKFQQYTNSI 433
             KR ++L   Q K+    TE      + +   E    K+ +L    E EI     +Y    
Sbjct:   390 KRMEELREVQIKLREERTEKQRDMERRRIRIEQTEKKMADLKESIETEIQSAHDEYLKLE 449

Query:   434 GTL-LPVTEIESS 445
               + L +TE+E S
Sbjct:   450 SHIKLYITEMEKS 462

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031617 "NMS complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00070302 hypothetical protein (442 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
pfam03800	144	pfam03800, Nuf2, Nuf2 family	7e-24
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-06
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	3e-05
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	4e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam04156	186	pfam04156, IncA, IncA protein	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	0.004

>gnl|CDD|217737 pfam03800, Nuf2, Nuf2 family

 Score = 96.5 bits (241), Expect = 7e-24
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 7/146 (4%)

Query: 3   KFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQL 61
           K  +PRL   EIV  L E  +   TE DL  P P+ V  LY R+L +F+ +  E      
Sbjct: 4   KDSFPRLPVDEIVECLRELGLPA-TEEDLLKPTPEVVQMLYERILELFMGITRET-LDGA 61

Query: 62  DFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAI 121
             AA E +E P+L+  ++ +++LY  ++  +       +F+L DL++P   RT   LSAI
Sbjct: 62  MRAAAEGIEYPELYEETLPLLRLYRYMQRFLEVCGVN-DFSLSDLLKPTPKRTRRILSAI 120

Query: 122 LNFCLYKDTKMNLLRPIAEDLTRLDE 147
           +NF  +++ ++ L     E L +L+ 
Sbjct: 121 VNFARFREERLEL---YEEHLQKLES 143

Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Arabidopsis thaliana T7P1.14. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region. Length = 144

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 55/288 (19%), Positives = 125/288 (43%), Gaps = 12/288 (4%)

Query: 151 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 210
           EL +++ +L  E+    E  E     +QE++ K++ELR  + +L +    L+  L  L  
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295

Query: 211 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ 270
           +   L+++       L    +Q  +L +++ +   KL    EE   + E+  + ++  ++
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE-LE 354

Query: 271 SFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSL 330
           S + +   LE   + L+  S+     + +    +    +E    SL   +         L
Sbjct: 355 SLEAELEELEAELEELE--SRLEELEEQLETLRSKVAQLELQIASLNNEIE-------RL 405

Query: 331 EAKLIERQGKVEQLDELQQQLEKER-NLKSEDATRAFENVKLEMESKRQDLEARQKKVEA 389
           EA+L   + + E+L +  ++L K+    + ++     E ++ E+E  +++LE  ++ +E 
Sbjct: 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465

Query: 390 VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 437
           +  E++         +   A     L S  E + E  + ++  +  LL
Sbjct: 466 LREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALL 512

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 53/291 (18%), Positives = 123/291 (42%), Gaps = 36/291 (12%)

Query: 144  RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 203
            +L+E+ ++L  ++++L AEI    E  E     + E +A+++EL   I+ L +   +LR 
Sbjct: 744  QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803

Query: 204  TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ--------------------- 242
             L++L+ +   L+E+ +     L    ++ A    ++                       
Sbjct: 804  ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863

Query: 243  ---SPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAI 299
                 E+L+  LE   + R    +A  L     +E +  L   +    ++ ++  +++  
Sbjct: 864  LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

Query: 300  LEQVNSAKS-IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLK 358
            L Q+      +E    +L+ RL+++  L  +LE          +  +E +++L++  N  
Sbjct: 924  LAQLELRLEGLEVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLKRLENKI 981

Query: 359  SE------DATRAFENVK---LEMESKRQDLEARQKKVEAVVTEVDAITSK 400
             E       A   +E +K     + ++++DL   ++ +E  + E+D    +
Sbjct: 982  KELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 51/261 (19%), Positives = 122/261 (46%), Gaps = 12/261 (4%)

Query: 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 197
           + E+L  L E+  E E +I +L +E+    E  E     + E+  +++EL   I  L + 
Sbjct: 251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310

Query: 198 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 257
              L   L +L+E+   L EK    +    + +++   L  ++ Q   +L+   EE +  
Sbjct: 311 LEELENELEELEERLEELKEKIEALK----EELEERETLLEELEQLLAELEEAKEELEEK 366

Query: 258 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK-SIEKDYKSL 316
                +  +   ++ +E+   LE       ++++   +++ +  ++ S +  +E+  + L
Sbjct: 367 LSALLEELEELFEALREELAELE------AELAEIRNELEELKREIESLEERLERLSERL 420

Query: 317 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESK 376
           +    +   L+  LE    E +   E+L+EL++QLE+ R+ + ++  R    ++ E++  
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD-RLKELERELAELQEELQRL 479

Query: 377 RQDLEARQKKVEAVVTEVDAI 397
            ++L + + +++ +  E  A 
Sbjct: 480 EKELSSLEARLDRLEAEQRAS 500

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 51/262 (19%), Positives = 125/262 (47%), Gaps = 15/262 (5%)

Query: 138  IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 197
            + E L  L+E+   LE+ +++L  EI    E R       Q +  +++EL + +++  + 
Sbjct: 756  LQERLEELEEELESLEEALAKLKEEIEELEEKR-------QALQEELEELEEELEEAERR 808

Query: 198  QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 257
              +L   L  L+++   L+++  + E ++ +  ++  +L  ++    E+L++ LEE K  
Sbjct: 809  LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEEL----EELEKELEELKEE 864

Query: 258  REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQM-QAILEQVNSAKSIEKDYKSL 316
             EE    ++      +E     E  ++ L+++  + A++ + I +     + +E   + L
Sbjct: 865  LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924

Query: 317  KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER--NLKSEDATRAFENVKLEME 374
            +  L +     +    +         +++ L++++E     NL++ +     E    E++
Sbjct: 925  EVELPELEEELEEEY-EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELK 983

Query: 375  SKRQDLEARQKKVEAVVTEVDA 396
            S+R+DLE  ++K+  V+ E+D 
Sbjct: 984  SQREDLEEAKEKLLEVIEELDK 1005

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 50/283 (17%), Positives = 128/283 (45%), Gaps = 18/283 (6%)

Query: 144 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 203
            L+E+  ELE+KI++L   +A   +  E       E++ ++++LR+ +++L++   +LR 
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELE-------ELEEELEQLRKELEELSRQISALRK 733

Query: 204 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 263
            L +L+ +   L+E+ +Q   +L +   +  +L  ++ ++ E+L     E + +  +   
Sbjct: 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793

Query: 264 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD 323
            ++  +++ +E    L      L          +         +S+E+   + + RL D 
Sbjct: 794 LKE-ELKALREALDELRAELTLLN---------EEAANLRERLESLERRIAATERRLEDL 843

Query: 324 VVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEAR 383
               + L   +     ++E+L+EL ++LE E      +     E +   + S+ ++L   
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA-LLRSELEELSEE 902

Query: 384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 426
            +++E+  +E+     + +        +L+ L  + + + E+ 
Sbjct: 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 70/321 (21%), Positives = 147/321 (45%), Gaps = 33/321 (10%)

Query: 135 LRPIAEDLTRLDEQRSELEDKIS--QLNAEIA-AYNEVRE--RELPL---VQEVDAKVKE 186
           L    E+L RL++  +ELE ++   +  AE A  Y E++   REL L   V  ++   +E
Sbjct: 181 LERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREE 240

Query: 187 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK 246
           L +  ++L + +  L     +L+E    L+E   +     V  +++  +   K + +   
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLE-----VSELEEEIEELQKELYALAN 295

Query: 247 LQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSA 306
               LE++K   +  R+      +  +E    LE  +  L +++++ A+++  LE+    
Sbjct: 296 EISRLEQQK---QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE---- 348

Query: 307 KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQL----DELQQQLEKERN----LK 358
             ++++ +SL+A L +     + LE++L E + ++E L     +L+ Q+    N    L+
Sbjct: 349 --LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406

Query: 359 S--EDATRAFENVKLEMESKRQDL-EARQKKVEAVVTEVDAITSKTKFVKESGAAKLQEL 415
           +  E      E ++ E+E   + L EA  K+++A + E++    + +   E     L+EL
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466

Query: 416 ASKAEEIVEKFQQYTNSIGTL 436
             + EE  +        +  L
Sbjct: 467 REELEEAEQALDAAERELAQL 487

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 58/311 (18%), Positives = 139/311 (44%), Gaps = 24/311 (7%)

Query: 132 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLV-QEVDAKVKELRQT 190
              L    E+L RL++   ELE ++ +L          R+ E     QE+ A+++EL   
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLE---------RQAEKAERYQELKAELRELELA 228

Query: 191 -----IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 245
                +++L K    L   L++L+E+   L E+  + E ++ +   +  +LR ++ +  E
Sbjct: 229 LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQE 288

Query: 246 KLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 305
           +L    EE + +  E     +   +   E     E  ++  +K+     +++     +  
Sbjct: 289 ELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348

Query: 306 AKSIEKDYKS--------LKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL 357
            + +  + +         L A L +   L ++L  +L E + ++ ++    ++L++E   
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408

Query: 358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS 417
             E   R  E ++ +++ + ++LEA  ++++  + E++    + +   E    +L+EL  
Sbjct: 409 LEERLERLSERLE-DLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467

Query: 418 KAEEIVEKFQQ 428
           +  E+ E+ Q+
Sbjct: 468 ELAELQEELQR 478

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 65/323 (20%), Positives = 125/323 (38%), Gaps = 37/323 (11%)

Query: 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 197
           +      L+++  EL D++ +      A+NE  E       +++ + +ELR+   +L   
Sbjct: 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371

Query: 198 QVSLRTTLNKLKEKTGALDE-------KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRT 250
               R  +   +E+   L+E       +F     DL  +     +LR +  +  E+    
Sbjct: 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431

Query: 251 LEEKKSIREEARDAEKL--------------------AMQSFQEKTTTLEVYQKTLKKMS 290
               ++ RE   +AE L                     ++  +E+   LE     L+ + 
Sbjct: 432 EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELE---AELEDLE 488

Query: 291 KQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ 350
           ++  +++  LE+       E   + L+ R  D   L       + E++ + E+L E   +
Sbjct: 489 EEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548

Query: 351 LEKERNLKSEDATRAFENVK------LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 404
           LE E   K E A  A E  +       E+ SK  +L+ R + +E + T + AI      +
Sbjct: 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEI 608

Query: 405 KESGAAKLQELASKAEEIVEKFQ 427
            E    K + LA   +E  E+  
Sbjct: 609 -ERLREKREALAELNDERRERLA 630

Length = 880

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 238
           ++  ++  L + I++    +  L   L  L+ +  +L+ +  +T  DL +  +Q ADL +
Sbjct: 42  QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101

Query: 239 KIVQSPEKL---QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ 295
           ++     +    +R L E+ +  + +      A+    E              ++   A+
Sbjct: 102 RLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAE 161

Query: 296 MQAILEQVNSA-----KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD---EL 347
               L+            I  +   L   L++       L   L ER+  + QL+     
Sbjct: 162 RIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSA 221

Query: 348 QQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEA 389
            Q+  +E             + +      R+   A +     
Sbjct: 222 DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263

Length = 420

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 49/291 (16%), Positives = 133/291 (45%), Gaps = 18/291 (6%)

Query: 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 197
            AE    L  +  ELE  +           E+R+      +E++ ++  L + +++L + 
Sbjct: 211 KAERYQELKAELRELELALLLAK-----LKELRKEL----EELEEELSRLEEELEELQEE 261

Query: 198 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 257
                  + +LK +   L E+  + + +L++  ++  +L  +I    E+L+    E + +
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321

Query: 258 REEARDAEKLA---MQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK 314
            E   + ++      +  +E+ T LE  ++ L ++ +   +++  L  +   + +E+ ++
Sbjct: 322 EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL--LEELEELFE 379

Query: 315 SLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME 374
           +L+  L +   L+  L     E +    +++ L+++LE+    + ED     + ++ E+E
Sbjct: 380 ALREELAE---LEAELAEIRNELEELKREIESLEERLERLSE-RLEDLKEELKELEAELE 435

Query: 375 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEK 425
             + +LE   +++E +  +++ +  + K ++   A   +EL    +E+   
Sbjct: 436 ELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSL 486

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 62/287 (21%), Positives = 142/287 (49%), Gaps = 18/287 (6%)

Query: 141 DLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS 200
           +L  L+E+ +ELE ++ +L  E+ +          L++E+  +++EL + +++L +   +
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 201 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREE 260
           L   L +L+ +   L+E+  + E +L +  ++  +L  ++    E L + L+E+    EE
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK-LKEEIEELEE 786

Query: 261 ARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARL 320
            R A +  ++  +E+    E     L++  +   Q +  LEQ    + +E++ + L+ +L
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ--EIEELEEEIEELEEKL 844

Query: 321 NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDL 380
           +        LE +L E + ++E+L E  ++LE E+    ++            E ++++L
Sbjct: 845 D-------ELEEELEELEKELEELKEELEELEAEKEELEDELKEL--------EEEKEEL 889

Query: 381 EARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 427
           E   +++E+ + E+     K +   E   AKL+ L  +  E+ E+ +
Sbjct: 890 EEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 60/316 (18%), Positives = 130/316 (41%), Gaps = 31/316 (9%)

Query: 143 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLR 202
                +   L +++  L  E+++      R    + E+  ++ +  + I ++ K    L 
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 203 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEAR 262
               KLKE+   L+E  S  E ++     +  +L ++I    E+L+  L +   + E   
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI----EELEEDLHK---LEEALN 782

Query: 263 DAE-KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKD--------- 312
           D E +L+     E    L   ++ + ++  +  +++  L ++   K   +          
Sbjct: 783 DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842

Query: 313 ------YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER-NLKSE--DAT 363
                  KS++  + +     + LE +L E +  +  L+     L+KER  L+++  +  
Sbjct: 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902

Query: 364 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 423
           R  E ++ ++E KR+ L   + K+EA+  E+  I       +E    +L       E++ 
Sbjct: 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-----EDVQ 957

Query: 424 EKFQQYTNSIGTLLPV 439
            + Q+    I  L PV
Sbjct: 958 AELQRVEEEIRALEPV 973

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 139 AEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ 198
            E+L   +    ELE  +++L        E+ E+   L++E++   + LR+ + +L    
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKE---ELEEKLSALLEELEELFEALREELAELEAEL 392

Query: 199 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS---PEKLQRTLEEKK 255
             +R  L +LK +  +L+E+  +    L    ++  +L +++ +     E+L   LEE +
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452

Query: 256 SIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKS 315
              EE RD  K   +   E    L+  +K L  +  +  +++A        +++ +  +S
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 60/271 (22%), Positives = 121/271 (44%), Gaps = 11/271 (4%)

Query: 168 EVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ--TEFD 225
           E          E+  +++EL + +++L +  + L      LKE+     EK      E +
Sbjct: 487 EEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELE 546

Query: 226 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKT 285
            ++   Q   L+ ++ Q  ++LQ   E  + +R      E+L  +  +E+   L+   K 
Sbjct: 547 ELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEEL--EELRERLKELKKKLKE 604

Query: 286 LKKMSKQSA---QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVE 342
           L++   Q     Q   + E  N  +  E++ +S   +LN    L++ L+A L E + KVE
Sbjct: 605 LEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVE 664

Query: 343 QLDELQQQLE--KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 400
           +L+   ++     E   + E+     E ++ E+E  R++LE   KK+  +   ++ + S+
Sbjct: 665 ELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESR 724

Query: 401 TKFVKES--GAAKLQELASKAEEIVEKFQQY 429
              ++E      KL++     EE+ EK  + 
Sbjct: 725 KAELEELKKELEKLEKALELLEELREKLGKA 755

Length = 908

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 34/208 (16%), Positives = 84/208 (40%), Gaps = 12/208 (5%)

Query: 225 DLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQK 284
           +L  +  +     ++   +  +LQ+  +E++++R+E   A +   ++ QE     +  Q 
Sbjct: 89  ELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQD 148

Query: 285 TLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQL 344
              ++   + Q + +  Q  S ++ +K  ++   +L    VLD  L +  IE++ +    
Sbjct: 149 LQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL-KSQVLDLKLRSAQIEQEAQ---- 203

Query: 345 DELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 404
             L  +    +    E A RA    +     +++D +  QK  +                
Sbjct: 204 -NLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE------ 256

Query: 405 KESGAAKLQELASKAEEIVEKFQQYTNS 432
           +E    +L+   ++ E+ V + + Y  +
Sbjct: 257 RERQLQRLETAQARLEQEVAQLEAYYQA 284

Length = 499

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 54/278 (19%), Positives = 125/278 (44%), Gaps = 11/278 (3%)

Query: 151 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 210
           ELE K  QL  EI    E R+       E+  +  EL +   +LN     LR    +L+E
Sbjct: 10  ELELKRKQLKEEIEELKEKRD-------ELRKEASELAEKRDELNAKVRELREKAQELRE 62

Query: 211 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ 270
           +   ++E+  + +    +   +  +LR +  +  EK        +SI+   R+ E+L  +
Sbjct: 63  ERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKK 122

Query: 271 SFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSL 330
             Q    T E  ++ ++K+ +   +++   + +   + +++    +         + + +
Sbjct: 123 -QQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKI 181

Query: 331 EAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAV 390
           +    E Q   E++ +L ++ ++ R  ++++    F  +  +++   ++    Q ++  +
Sbjct: 182 QELANEAQEYHEEMIKLFEEADELRK-EADELHEEFVELSKKIDELHEEFRNLQNELREL 240

Query: 391 VTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ 428
             ++ A+ +K K  K     K +EL  +AEEI EKF++
Sbjct: 241 EKKIKALRAKEKAAKR--REKREELKERAEEIYEKFKR 276

Length = 294

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 51/266 (19%), Positives = 122/266 (45%), Gaps = 8/266 (3%)

Query: 144 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 203
            L E   E++ +I +L   I     + E     ++E + +++E+ + I +++     LR 
Sbjct: 166 NLGEVIKEIKRRIERLEKFIKRTENIEEL----IKEKEKELEEVLREINEISSELPELRE 221

Query: 204 TLNKL---KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREE 260
            L KL    ++   L E+  + E +L         L  KI +  E+++   +E + + E+
Sbjct: 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281

Query: 261 ARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARL 320
            ++ ++L  +  +E     E Y++ L ++ +   ++  + E++N  +   K+ +  + RL
Sbjct: 282 VKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Query: 321 NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDL 380
            +     K LE +L E + + E  +E + + E+   LK        E ++ E+E   +  
Sbjct: 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400

Query: 381 EARQKKVEAVVTEVDAITSKTKFVKE 406
           E  ++++  +   +  +  + K +K+
Sbjct: 401 EEIEEEISKITARIGELKKEIKELKK 426

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 41/216 (18%), Positives = 102/216 (47%), Gaps = 14/216 (6%)

Query: 140 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 199
           +    L E+ + LE ++ +L A++       +     + E++ K++EL++ ++ L     
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361

Query: 200 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIRE 259
            L   L +L+ +   L+E+       + Q   Q A L ++I +   +L+R  + ++ +++
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421

Query: 260 EARDAE-KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKA 318
           E  +   KL     +E    LE  ++ L+++ ++  +++  LE       + ++ +  + 
Sbjct: 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE------ELREELEEAEQ 475

Query: 319 RLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE 354
            L+       + E +L + Q +++ L+ LQ+ LE  
Sbjct: 476 ALD-------AAERELAQLQARLDSLERLQENLEGF 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 60/290 (20%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 197
           +AE++  L E+  ELE++   L AE    +   E      +E++ + +ELR  +++    
Sbjct: 277 LAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA 336

Query: 198 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 257
             +       L+E    L+E+  +         ++ A+L S++ ++ E ++   EE + +
Sbjct: 337 AQAHNEEAESLREDADDLEERAEELR-------EEAAELESELEEAREAVEDRREEIEEL 389

Query: 258 REEARDAEKL---AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK 314
            EE  +  +    A          LE  ++   ++ ++ A+++A L    + + +E+   
Sbjct: 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR--TARERVEEAEA 447

Query: 315 SLKARLNDDV---VLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKL 371
            L+A    +    V        + E + +VE+L+   + LE+E     E   RA + V+ 
Sbjct: 448 LLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA 507

Query: 372 EMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEE 421
             E + + LE R++ +E ++ E      + +   E    +  EL ++AEE
Sbjct: 508 --EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE 555

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 57/286 (19%), Positives = 120/286 (41%), Gaps = 35/286 (12%)

Query: 135 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 194
              I   L  L+E+  +L ++IS+L   +    ++ E       E++ K+K+L +  Q  
Sbjct: 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE-------ELNKKIKDLGEEEQ-- 289

Query: 195 NKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE- 253
                       ++KEK G L+ + +  E  + +  ++  D   ++ +   ++ + L E 
Sbjct: 290 -----------LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338

Query: 254 ---KKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIE 310
              ++ I EE +  +KL  + + E    LE  +  L+++ K+ A      E  +  K   
Sbjct: 339 EELEREIEEERKRRDKL-TEEYAELKEELEDLRAELEEVDKEFA------ETRDELKDYR 391

Query: 311 KDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVK 370
           +  + LK  +N+   L + L+    E Q   E+L +L   +       +E      E+  
Sbjct: 392 EKLEKLKREINE---LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK-EDKA 447

Query: 371 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELA 416
           LE++ +   LE     +     E+  +  +   V++  +   +ELA
Sbjct: 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 68/322 (21%), Positives = 138/322 (42%), Gaps = 52/322 (16%)

Query: 140 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 199
           E++ R +EQR +  +   + +  +  + E RE     ++ ++A++++LR+TI +  + + 
Sbjct: 220 EEIERYEEQREQARETRDEADEVLEEHEERREE----LETLEAEIEDLRETIAETERERE 275

Query: 200 SLRTTLNKLKEKTGALDEK----FSQTEFDLVQS----------VQQNADLRSKIVQSPE 245
            L   +  L+E+   L+E+     ++   D   +            ++ +LR ++ +   
Sbjct: 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335

Query: 246 KLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 305
             Q   EE +S+RE+A D E+ A +  +E+   LE         S+     +A+ ++   
Sbjct: 336 AAQAHNEEAESLREDADDLEERA-EELREEAAELE---------SELEEAREAVEDRREE 385

Query: 306 AKSIEKDYKSLKARLNDDVV----LDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSED 361
            + +E++ + L+ R  D  V     +  LE    ER    E+  EL+  L   R  + E+
Sbjct: 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE-RVEE 444

Query: 362 ATRAFENVKL-----------------EMESKRQDLEARQKKVEAVVTEVDA-ITSKTKF 403
           A    E  K                  E   + ++LEA  + +E  V EV+  +      
Sbjct: 445 AEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504

Query: 404 VK-ESGAAKLQELASKAEEIVE 424
           V+ E    +L+E     EE++ 
Sbjct: 505 VEAEDRIERLEERREDLEELIA 526

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 21/202 (10%)

Query: 135 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 194
           L    E L +L+ +  +L  +I +L  EI    + R++      E+  ++++LR  ++++
Sbjct: 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV 376

Query: 195 NK-------HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 247
           +K            R  L KLK +   L  +  + + +L +  ++ ADL + I     K+
Sbjct: 377 DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKI 436

Query: 248 QRTLEEKKSIREEARDAEKLAMQ----------SFQEKTTTLEVYQKTLKKMSKQ----S 293
               EEK+    E +  E    Q             +     +  +K L K+ ++     
Sbjct: 437 NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496

Query: 294 AQMQAILEQVNSAKSIEKDYKS 315
           AQ +A  E+V   +++E+  K+
Sbjct: 497 AQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 38/263 (14%)

Query: 189 QTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 248
           Q ++DL K    + T    L+ K   L+ + S+T+  +  + Q+        V+  E+  
Sbjct: 153 QALEDLEK----ILTEKEALQGKINILEMRLSETDARIKLAAQEKIH-----VEILEEQL 203

Query: 249 RTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKK-MSKQSAQMQAILEQVNSAK 307
             L  +  IR      E L + S  ++   L+     LK  +    A++  + E      
Sbjct: 204 EKLRNELLIRGAT---EGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVF 260

Query: 308 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ--LEKERNLKS--EDAT 363
            +EK+   L A L +       LE+K I  Q  V +L  LQ     EK  NL+   + AT
Sbjct: 261 KLEKERSLLDASLRE-------LESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRAT 313

Query: 364 RAFENVKLEMESKRQDLEARQKKVEAVVTE----------VDAITSKTKFVKESGAAKLQ 413
              E   L ++ + QDL  +  K+EA + E          V+ +  K K ++E   A   
Sbjct: 314 NQVEKAALVLD-QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDH 372

Query: 414 ELASKA---EEIVEKFQQYTNSI 433
           E+ S     +E +++FQ   + +
Sbjct: 373 EIHSYIQLYQESIKEFQDTLSKL 395

Length = 977

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 27/131 (20%), Positives = 64/131 (48%)

Query: 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 197
           + E+L  L+ + +E+ +++ +L  EI +  E  ER    ++++  ++KEL   +++L   
Sbjct: 381 LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE 440

Query: 198 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 257
              L   L +L+E+   L ++  + E +L +  ++   L  ++     +L R   E+++ 
Sbjct: 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRAS 500

Query: 258 REEARDAEKLA 268
           +      E L 
Sbjct: 501 QGVRAVLEALE 511

Length = 1163

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 27/115 (23%), Positives = 59/115 (51%)

Query: 188 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 247
            Q +++L      L+  L++L+E+   L+E+ ++ E +L    +    LR  +    E+L
Sbjct: 71  PQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERL 130

Query: 248 QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ 302
           +   E  K + +E R+  +   +  +E    LE  Q+ L+++ +   ++Q++LEQ
Sbjct: 131 ESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQ 185

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 35/172 (20%), Positives = 79/172 (45%), Gaps = 13/172 (7%)

Query: 139 AEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVD-------AKVKELRQTI 191
           AE+L  L+E+  EL++++  L AE+       E     ++E++       +KV +L   I
Sbjct: 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

Query: 192 QDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 251
             LN     L   L +L+++     E+  Q   +L++ +++      ++    E+L+  L
Sbjct: 396 ASLNNEIERLEARLERLEDRR----ERLQQEIEELLKKLEEAE--LKELQAELEELEEEL 449

Query: 252 EEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQV 303
           EE +   E   +A +   +  +E    L+  ++ L ++  +   ++ + E +
Sbjct: 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 66/320 (20%), Positives = 144/320 (45%), Gaps = 39/320 (12%)

Query: 126 LYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV--RERELPLVQEVDAK 183
           L ++ +  LL     +L R++++  E+E+K  +L  E+    +V  +E EL  ++E+  +
Sbjct: 445 LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQ 504

Query: 184 VKELRQTIQDLNKHQVSLRTT-LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 242
           +KEL + ++  N  ++  +     KLKEK   L  +    + +L    ++  +L+ K+ +
Sbjct: 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAE 560

Query: 243 SPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ 302
             +KL    EE   + +E    E+L  +S +E    L+              +++    +
Sbjct: 561 LEKKLDELEEELAELLKEL---EELGFESVEELEERLK--------------ELEPFYNE 603

Query: 303 VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDA 362
               K  EK+ +  +  L     L++ L+    E     ++L+EL+++LE+     SE+ 
Sbjct: 604 YLELKDAEKELEREEKELKK---LEEELDKAFEELAETEKRLEELRKELEELEKKYSEE- 659

Query: 363 TRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAA---------KLQ 413
              +E ++ E     ++L   + ++E +    + I    + +KE             KL+
Sbjct: 660 --EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717

Query: 414 ELASKAEEIVEKFQQYTNSI 433
           +   + EE+ EK ++Y   +
Sbjct: 718 KALERVEELREKVKKYKALL 737

Length = 880

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 42/274 (15%), Positives = 116/274 (42%), Gaps = 20/274 (7%)

Query: 147 EQRSELEDKISQLNAEIA--------AYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ 198
            ++ + E+++ Q NAE+         A   +++  L L +  + +     +    + + +
Sbjct: 621 AKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERK 680

Query: 199 VSLRTTLNKLKEKTGALDEK---FSQTEFD--LVQSVQQNADLRSKIVQSPEKLQRTLEE 253
               T L +L  +   L E+   F +   D       ++ A  +    +   +L +    
Sbjct: 681 QQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAA 740

Query: 254 KKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDY 313
            ++ R +A+   K   + +  +  +L+V   T+K++ +Q  +++  +E++   +   ++Y
Sbjct: 741 IEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREY 800

Query: 314 KSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM 373
           ++    + +  +   SL  +      ++ +L+   ++L++E     +D        KLE 
Sbjct: 801 RAF---MQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKDTKL--RRKKLEQ 855

Query: 374 ESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES 407
           E  R+ LE +  +++ ++  +     +   +KE 
Sbjct: 856 E--RKALEKQLDQLDELLRGLRDEMRQLAELKEP 887

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 128 KDTKMNLLRPIAEDLTRLDEQRSELED---KISQLNAEIAAYNEVRERELPLVQEVDAKV 184
           K+   +L   + E      E R EL+D   K+ +L  EI       +R    +Q +  ++
Sbjct: 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL 422

Query: 185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP 244
            +L   I         +   +N+L+E+      +  + E+ L Q     +    ++    
Sbjct: 423 ADLNAAIAG-------IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475

Query: 245 EKLQRTLEEKKSIREEARDAEKLAMQSFQE 274
           E+  R  +E   ++ E  +AE  A  S + 
Sbjct: 476 EEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 52/271 (19%), Positives = 110/271 (40%), Gaps = 22/271 (8%)

Query: 128  KDTKMNLLRPIAEDLTRLDEQRSELE---DKISQLNAEIAAYNEVREREL-PLVQEVDAK 183
               +  L R ++       +QR + +   + ++ LN  I   N + +  L   V+E+  +
Sbjct: 842  NSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRER 901

Query: 184  VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 243
            + E ++  + + +H  +L + L  +     +  E+F Q + D  Q+ Q     R +    
Sbjct: 902  LDEAQEAARFIQQHGNTL-SKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFAL 960

Query: 244  PEKLQR----TLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAI 299
             E +QR    +  +   +  E  D  +   Q  ++        ++ L++   Q +Q   +
Sbjct: 961  TEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQV 1020

Query: 300  LEQVNSAKSIEKD-YKSLKARLND-DVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL 357
            L  + S+   +K+    L+  L D  V  D   E +   R+      DEL  QL   R+ 
Sbjct: 1021 LASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRR------DELHAQLSTNRSR 1074

Query: 358  KSEDATRAFENVKLEMESKRQDLEARQKKVE 388
            +++      E      E++  +L  + +K+E
Sbjct: 1075 RNQ-----LEKQLTFCEAEMDNLTRKLRKLE 1100

Length = 1480

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	100.0
PF03800	146	Nuf2: Nuf2 family; InterPro: IPR005549 Members of	100.0
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	99.11
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.83
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.77
PRK03918	880	chromosome segregation protein; Provisional	98.66
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.61
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.58
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.53
PRK02224	880	chromosome segregation protein; Provisional	98.44
PRK02224	880	chromosome segregation protein; Provisional	98.4
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.39
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	98.36
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.33
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.32
PRK01156	895	chromosome segregation protein; Provisional	98.27
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.26
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.25
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.23
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.21
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.2
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.2
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.16
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.02
COG5185	622	HEC1 Protein involved in chromosome segregation, i	98.02
PRK03918	880	chromosome segregation protein; Provisional	98.02
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.95
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.92
PHA02562	562	46 endonuclease subunit; Provisional	97.91
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.88
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.85
PRK04778	569	septation ring formation regulator EzrA; Provision	97.81
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.81
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.77
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.77
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.7
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.67
PHA02562	562	46 endonuclease subunit; Provisional	97.55
PRK01156	895	chromosome segregation protein; Provisional	97.53
COG5185	622	HEC1 Protein involved in chromosome segregation, i	97.46
PRK04863	1486	mukB cell division protein MukB; Provisional	97.45
PRK11637	428	AmiB activator; Provisional	97.41
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.24
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.24
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.23
PRK11637	428	AmiB activator; Provisional	97.22
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.18
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.05
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.97
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.94
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.87
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.87
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.85
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.81
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.8
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.79
PRK04778	569	septation ring formation regulator EzrA; Provision	96.78
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.78
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.75
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.63
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.56
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.45
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.4
COG2433	652	Uncharacterized conserved protein [Function unknow	96.24
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.14
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	96.14
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.13
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.07
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.03
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.0
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.91
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.85
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	95.77
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.68
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.62
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.58
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.48
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.48
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.4
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.29
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.2
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	95.17
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.12
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.05
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	95.02
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.96
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.95
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.86
PRK09039	343	hypothetical protein; Validated	94.86
KOG1937	521	consensus Uncharacterized conserved protein [Funct	94.82
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	94.77
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.64
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	94.62
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.61
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.38
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.2
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.18
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.11
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.09
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	94.06
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.0
KOG0018	1141	consensus Structural maintenance of chromosome pro	93.9
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	93.86
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	93.81
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.8
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.75
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.72
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	93.71
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	93.7
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	93.65
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	93.43
PRK09039	343	hypothetical protein; Validated	93.21
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.2
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.1
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.09
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.09
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	93.01
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	92.93
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.84
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.82
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.78
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	92.58
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.51
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	92.39
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.37
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.08
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.0
KOG0964	1200	consensus Structural maintenance of chromosome pro	91.98
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	91.91
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	91.83
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	91.54
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	91.39
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	91.38
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	91.17
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	91.1
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	90.87
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.77
KOG0018	1141	consensus Structural maintenance of chromosome pro	90.77
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.72
KOG1962	216	consensus B-cell receptor-associated protein and r	90.26
KOG4302	660	consensus Microtubule-associated protein essential	90.11
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.03
PRK10884	206	SH3 domain-containing protein; Provisional	90.02
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	90.02
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	90.01
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.72
PF15294	278	Leu_zip: Leucine zipper	89.63
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.31
PF05791	184	Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL	89.2
PRK04863	1486	mukB cell division protein MukB; Provisional	89.14
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.81
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.72
KOG4673	961	consensus Transcription factor TMF, TATA element m	88.62
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.07
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	87.99
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	87.93
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	87.92
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	87.87
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.86
COG4372	499	Uncharacterized protein conserved in bacteria with	87.78
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.62
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	87.53
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	87.35
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	86.91
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	86.61
PRK10884	206	SH3 domain-containing protein; Provisional	86.37
KOG0963	629	consensus Transcription factor/CCAAT displacement	86.35
PRK10869	553	recombination and repair protein; Provisional	86.31
PF03800	146	Nuf2: Nuf2 family; InterPro: IPR005549 Members of	86.2
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	85.94
PRK15422	79	septal ring assembly protein ZapB; Provisional	85.93
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.8
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	85.69
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	85.64
PRK11281	1113	hypothetical protein; Provisional	85.45
KOG2991	330	consensus Splicing regulator [RNA processing and m	85.41
PRK15422	79	septal ring assembly protein ZapB; Provisional	85.28
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	85.21
PLN02939	977	transferase, transferring glycosyl groups	85.17
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	85.0
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	84.94
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.68
PF12240	205	Angiomotin_C: Angiomotin C terminal; InterPro: IPR	84.68
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	84.68
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.52
PF14662	193	CCDC155: Coiled-coil region of CCDC155	84.22
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.21
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	83.31
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	83.21
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	81.91
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	81.3
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	81.11
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	81.04
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	80.95
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	80.65
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	80.65

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.9e-55  Score=424.91  Aligned_cols=427  Identities=28%  Similarity=0.426  Sum_probs=332.5

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH-HHhcccCcccchhcchHhhhcCCCchhHHHHH
Q 013334            1 MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSV   79 (445)
Q Consensus         1 ms~~~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l-~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~   79 (445)
                      |+.|+||+|+++|||.||++|||+ ++..+|..|||++|..+|+.|+ .|||++.+ ..++..+.+....+||++|.+|+
T Consensus         1 ~~~~~fP~L~~aEIv~~l~~~~i~-~at~ei~~PTs~~~~~lYe~il~~~mgl~~~-~l~~r~n~~~~~~EN~ei~~~sL   78 (446)
T KOG4438|consen    1 RNAYEFPRLSVAEIVICLKDAQIA-SATEEILTPTSDYVSPLYEVILEYYMGLDEE-ELLQRDNEALEQLENPEIHAESL   78 (446)
T ss_pred             CCccccCCCCHHHHHHHHHhcCcc-cchhhccCCCcccchhHHHHHHHHHHhhhHH-HHhhhhHHHHhcccCHHHHHHHH
Confidence            789999999999999999999996 6666699999999999999999 99999865 34444555777789999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 013334           80 QIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQL  159 (445)
Q Consensus        80 ~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l  159 (445)
                      .+..|+++|..|+..|||+ ||++.||++|++.||.+||||||||++||++|+..|++.+..++.+.+.+.++.+.+.++
T Consensus        79 ~~~~l~ki~~~Fl~~i~v~-dF~~~DLlkPes~Rtq~~LSavvNfa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~  157 (446)
T KOG4438|consen   79 QFKLLCKILDMFLMNIGVL-DFSFKDLLKPESSRTQRFLSAVVNFALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQA  157 (446)
T ss_pred             HHHHHHHHHHHHHHhcCcC-CCchhhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHh
Q 013334          160 NAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA-LDEKFSQTEFDLVQSVQQNADLRS  238 (445)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~-l~~~l~~~~~~l~~l~qe~~~L~~  238 (445)
                      ..++..+......+.+.++++++++++|.+.|.+++++|+++..++..++..... ....++.+.+.++++++....|++
T Consensus       158 ~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lkt  237 (446)
T KOG4438|consen  158 LKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKT  237 (446)
T ss_pred             HHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887777889999999999999999999999999999999999988888 556777888888899999999999


Q ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 013334          239 KIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ----MQAILEQVNSAKSIEKDYK  314 (445)
Q Consensus       239 ~Iv~SPe~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~----l~~~~e~~~~~k~~e~~~k  314 (445)
                      +||+||++|+..+++|+..+.+    ++.+|..|++|...++.  | ...+.++...    +..+.+.+-.....+....
T Consensus       238 qIV~sPeKL~~~leemk~~l~k----~k~~~~~l~~K~~iL~e--k-v~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v  310 (446)
T KOG4438|consen  238 QIVQSPEKLKEALEEMKDLLQK----EKSAMVELQEKAKILEE--K-VTNLQTIEKELKALLKKISSDGVEYDSLETKVV  310 (446)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh--H-hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            9999999999999999999855    44566666665544431  1 0111111111    1111222211111222222


Q ss_pred             HHHHhhh--hhHHhH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 013334          315 SLKARLN--DDVVLD---KSLEAKLIERQGKVEQLD-ELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE  388 (445)
Q Consensus       315 ~lk~kl~--~~~~~~---~~L~~kl~e~q~k~e~l~-e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e  388 (445)
                      .++.-+.  ++....   ...-.....|..++-.+. +.....+--..+..++..+.+....+.+......+++....++
T Consensus       311 ~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie  390 (446)
T KOG4438|consen  311 ELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIE  390 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhccHHHHHH
Confidence            2221111  111100   011112233444444444 2233333334445566777777777777777777777777777


Q ss_pred             HHHHHHHHHHh--hHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 013334          389 AVVTEVDAITS--KTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL  437 (445)
Q Consensus       389 ~~~~~v~~le~--~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~  437 (445)
                      ....++..++.  .+...+..++.++.+|..+|.++..||+.|+++|...+
T Consensus       391 ~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~~y~AEl~~~m  441 (446)
T KOG4438|consen  391 EKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVELYEAELKRIM  441 (446)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888  99999999999999999999999999999999997654

>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle

Probab=100.00  E-value=6.2e-40  Score=289.97  Aligned_cols=140  Identities=40%  Similarity=0.738  Sum_probs=103.5

Q ss_pred             CCCCCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH-HHhcccCcccchhcchHhhhcCCCchhHHHHHH
Q 013334            2 SKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQ   80 (445)
Q Consensus         2 s~~~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l-~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~   80 (445)
                      .+|+||+|+++||++||++||++ +|++||.||||++|++||++|| .++|++.++. .++.+++.+.++||++|.++++
T Consensus         5 ~~~~FP~L~~~eIv~~L~~~~~~-~t~~dl~kPt~e~v~~ly~~~L~~~~g~~~e~~-~~~~~~~~~~~~~pe~~~~~i~   82 (146)
T PF03800_consen    5 NKYSFPLLSPDEIVNCLQECGIP-VTEEDLKKPTPEFVQKLYERFLETFLGISPEDI-EQPMFEALESLEYPELHEESIP   82 (146)
T ss_dssp             ------S--HHHHHHHHHHHT---HHHHC--G--HHHHHHHHHHHHHHHHT--CGGG---C---TT---S-GGGGTTTHH
T ss_pred             ccCCCCCCCHHHHHHHHHHCCCC-cCHHHHcCCCHHHHHHHHHHHHHHHHCcCHHHH-hhhhHHHHhcccchhhHHHHHH
Confidence            36999999999999999999995 9999999999999999999999 9999976544 3467888899999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHh
Q 013334           81 IMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTR  144 (445)
Q Consensus        81 ~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~  144 (445)
                      +++||++|++||..|||+ |||++||++|+|+||+++|||||||++||+++++.|++++++++.
T Consensus        83 ~l~l~~~~~~~~~~~gv~-DF~l~Dl~~P~~~R~~~~LSalINF~~Fre~~~~~~~~~~~~~e~  145 (146)
T PF03800_consen   83 LLNLFRHLQKFLKDCGVP-DFSLSDLLKPDPKRTRRILSALINFARFREERMDEYEEIIEEFEE  145 (146)
T ss_dssp             HHHHHHHHHHHHHHTT------HHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHcCCC-CCCHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999 999999999999999999999999999999999999999988754

It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=2.4e-05  Score=80.82  Aligned_cols=226  Identities=15%  Similarity=0.216  Sum_probs=112.5

Q ss_pred             HHHHHHHHhhcCCC-CCChhhhCCCChhHHHHHHHHHHHHhcccCc------ccchh------cchH----hhhcCCCch
Q 013334           11 ATEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVLHE------DDQGQ------LDFA----ALEQLENPD   73 (445)
Q Consensus        11 ~~EIv~~L~~~~i~-~~t~~dl~~Pt~~~v~~ly~~~l~~~~~~~~------e~~~~------~~~~----~~~~l~~pe   73 (445)
                      .+.|.++|...|++ .++..-+.+|+.--...+|.++..+++-..+      +.-++      +||.    .+....-|.
T Consensus        76 ~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH  155 (581)
T KOG0995|consen   76 IRQIYNFLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPH  155 (581)
T ss_pred             HHHHHHHHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCC
Confidence            35788899999983 3899999999999999999988877743211      11111      1221    111112233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHH-HHHH-HHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHH
Q 013334           74 LHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE-YFLS-AILNFCLYKDTKMNLLRPIAEDLTRLDEQRSE  151 (445)
Q Consensus        74 ~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~-~iLS-alINF~rFre~~~~~~~~~~~e~~~l~~~~~~  151 (445)
                      .+..-++.+.+..-|-++-...--.  - +.+=-.|.-+-.. -++- ++=-|..|...--+ +.+..+++.....+...
T Consensus       156 ~WP~iL~mlhWlvdlI~~~t~~v~~--~-~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~  231 (581)
T KOG0995|consen  156 NWPHILGMLHWLVDLIRINTALVED--S-PLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFT  231 (581)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHhhc--c-chhccchHHHHHHHHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHH
Confidence            3333344444444443332222111  0 0111122222222 2222 23356666655433 33333333322222121


Q ss_pred             -HHHHHHHHHHHHHHHHH---HHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334          152 -LEDKISQLNAEIAAYNE---VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV  227 (445)
Q Consensus       152 -l~~~i~~l~~~~~~~~~---~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~  227 (445)
                       +-.+|+.+...+..+.+   .++......+-++.....|+..+..+..--..+......+......+..+|+..+.++.
T Consensus       232 ~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e  311 (581)
T KOG0995|consen  232 SIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIE  311 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             22333333333333322   22333334555566666676666666555455555555666666666666666666666


Q ss_pred             HHHHHHHHHHhhh
Q 013334          228 QSVQQNADLRSKI  240 (445)
Q Consensus       228 ~l~qe~~~L~~~I  240 (445)
                      .+.+++..|+.+|
T Consensus       312 ~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  312 KLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHHHHH
Confidence            6777777776554

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.83  E-value=6.3e-05  Score=88.70  Aligned_cols=271  Identities=18%  Similarity=0.248  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013334          153 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ  232 (445)
Q Consensus       153 ~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe  232 (445)
                      .++-..+...+.+........+.....++.+...+++++..+++.-..+...+.++..++.....++..++.++..+...
T Consensus       900 ~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~  979 (1930)
T KOG0161|consen  900 RAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN  979 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444443333333444455555555566666666555555556666666666666666666666555555


Q ss_pred             HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH------HHHHH----hHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 013334          233 NADLRSKIVQSPEKLQRTLEEKKSIREEARDAE------KLAMQ----SFQEKTTTLEVYQKTLKKMSKQS-------AQ  295 (445)
Q Consensus       233 ~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e------~~~~q----~~q~k~~~~e~~~k~~~~l~~~~-------~~  295 (445)
                      +++|...--.=-++++...+++...-++++...      ...++    ++.......-.+.|..+++...+       ..
T Consensus       980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~ 1059 (1930)
T KOG0161|consen  980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEE 1059 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            555542211111111111111111111111110      01111    11111112222222222222222       11


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHH
Q 013334          296 MQA-ILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---KSEDATRAFENVKL  371 (445)
Q Consensus       296 l~~-~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~---~~eel~~~~~~lke  371 (445)
                      +.. .++--+.++..+.++..++.++++.......++.++.+++.++.+|.+.+...+..+++   ...++...+++++.
T Consensus      1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111 12223455667788889999999999999999999999999999999999976666655   78899999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHH
Q 013334          372 EMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV  423 (445)
Q Consensus       372 e~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~  423 (445)
                      +++...+.+.+..........++..+...+.....+++..+..+...+..-.
T Consensus      1140 ~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~ 1191 (1930)
T KOG0161|consen 1140 ELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSL 1191 (1930)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999988888777766666777777777766666666666666665554433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.77  E-value=0.00076  Score=78.60  Aligned_cols=75  Identities=16%  Similarity=0.237  Sum_probs=41.5

Q ss_pred             HHHHHHHHHcCCCCCCCcc--------cccCCCcchHHHHHHHHHHHHhhHhhhhh---hhHHHHHHHHhHHHHHHHHHH
Q 013334           86 SMVKEVVTTVNCPMNFTLK--------DLIRPDATRTEYFLSAILNFCLYKDTKMN---LLRPIAEDLTRLDEQRSELED  154 (445)
Q Consensus        86 ~~~~~~l~~~gv~~DFt~~--------DL~~P~~~R~~~iLSalINF~rFre~~~~---~~~~~~~e~~~l~~~~~~l~~  154 (445)
                      ..+..++..+|++ .-++.        .++.-.|.--+.+|--+.+...|......   .+..+.+.+..+..+...+..
T Consensus       120 ~~~~~~l~~~~~~-~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~  198 (1164)
T TIGR02169       120 SEIHDFLAAAGIY-PEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQ  198 (1164)
T ss_pred             HHHHHHHHHcCCC-cCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888875 32222        44444566666788888888888655443   233333344444444444444


Q ss_pred             HHHHHHH
Q 013334          155 KISQLNA  161 (445)
Q Consensus       155 ~i~~l~~  161 (445)
                      ++..+..
T Consensus       199 q~~~l~~  205 (1164)
T TIGR02169       199 QLERLRR  205 (1164)
T ss_pred             HHHHHHH
Confidence            4444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.66  E-value=0.00085  Score=76.10  Aligned_cols=39  Identities=10%  Similarity=0.197  Sum_probs=24.2

Q ss_pred             HHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHh
Q 013334           89 KEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKD  129 (445)
Q Consensus        89 ~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre  129 (445)
                      .-|...+.|+ .-.+..++.+ |.--+.+|..+++.-+|..
T Consensus       124 ~~f~~~~~~~-Qg~~~~~~~~-~~~r~~~~~~~~~~~~~~~  162 (880)
T PRK03918        124 HVFLNAIYIR-QGEIDAILES-DESREKVVRQILGLDDYEN  162 (880)
T ss_pred             HHhceeEEEe-ccchHHHhcC-cHHHHHHHHHHhCCHHHHH
Confidence            3444555555 5556666664 4444678899988777733

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.61  E-value=0.0018  Score=75.44  Aligned_cols=44  Identities=7%  Similarity=0.307  Sum_probs=26.9

Q ss_pred             HHHHHHHcCCCC-CCC------cccccCCCcchHHHHHHHHHHHHhhHhhh
Q 013334           88 VKEVVTTVNCPM-NFT------LKDLIRPDATRTEYFLSAILNFCLYKDTK  131 (445)
Q Consensus        88 ~~~~l~~~gv~~-DFt------~~DL~~P~~~R~~~iLSalINF~rFre~~  131 (445)
                      +..++..+|+.. +|+      +..|...+|+..+.+|.-+++...|.+.+
T Consensus       124 ~~~~l~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (1179)
T TIGR02168       124 IQDLFLDTGLGKRSYSIIEQGKISEIIEAKPEERRAIFEEAAGISKYKERR  174 (1179)
T ss_pred             HHHHHhccCCCcccchheecccHHHHHcCCHHHHHHHHHHHccHHHHHHHH
Confidence            457777777641 221      12334446777777787778877776544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.58  E-value=0.0019  Score=75.33  Aligned_cols=57  Identities=19%  Similarity=0.347  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334          182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  238 (445)
Q Consensus       182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~  238 (445)
                      .+...+..++..+......+......+..+...+...+..+...+..+..++..+..
T Consensus       730 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~  786 (1164)
T TIGR02169       730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA  786 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444455555555555555555555555555555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.53  E-value=0.002  Score=74.97  Aligned_cols=19  Identities=11%  Similarity=0.235  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 013334          411 KLQELASKAEEIVEKFQQY  429 (445)
Q Consensus       411 ei~~i~~~y~~l~~~~~~Y  429 (445)
                      ++..+......|..++..|
T Consensus       966 ~~~~l~~~i~~lg~aiee~  984 (1179)
T TIGR02168       966 DEEEARRRLKRLENKIKEL  984 (1179)
T ss_pred             CHHHHHHHHHHHHHHHHHc
Confidence            3444444444444454444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.44  E-value=0.0057  Score=69.51  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          206 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       206 ~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      ..+..+...+..++..+...+......+..++
T Consensus       415 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  446 (880)
T PRK02224        415 EELREERDELREREAELEATLRTARERVEEAE  446 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444

>PRK02224 chromosome segregation protein; Provisional

Probab=98.40  E-value=0.0088  Score=67.94  Aligned_cols=37  Identities=11%  Similarity=0.170  Sum_probs=26.7

Q ss_pred             HHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhh
Q 013334           90 EVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLY  127 (445)
Q Consensus        90 ~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rF  127 (445)
                      .|...+.|+ -=.+..++.-+|..-+.++.-+.|.-+|
T Consensus       128 ~f~~~~~i~-Qge~~~~l~~~p~~R~~ii~~l~~l~~~  164 (880)
T PRK02224        128 AFVNCAYVR-QGEVNKLINATPSDRQDMIDDLLQLGKL  164 (880)
T ss_pred             HhcceeEee-ccChHHHHcCCHHHHHHHHHHHhCCHHH
Confidence            344455555 5557788887888888999999986665

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.39  E-value=0.0033  Score=62.52  Aligned_cols=103  Identities=22%  Similarity=0.330  Sum_probs=62.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          137 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER-ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL  215 (445)
Q Consensus       137 ~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~-~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l  215 (445)
                      .+-+.+....++...|+.....|..+|..+...... ..+.-.-.+.++..++..|..+......+..++..++.+...+
T Consensus         8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~   87 (312)
T PF00038_consen    8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL   87 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence            344455555555566666666666666666554222 2223344566777777777777777777777777777777777


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHhh
Q 013334          216 DEKFSQTEFDLVQSVQQNADLRSK  239 (445)
Q Consensus       216 ~~~l~~~~~~l~~l~qe~~~L~~~  239 (445)
                      ..+++........+..++..|+..
T Consensus        88 r~k~e~e~~~~~~le~el~~lrk~  111 (312)
T PF00038_consen   88 RRKYEEELAERKDLEEELESLRKD  111 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh
Confidence            777777766666677777776633

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=0.0041  Score=62.50  Aligned_cols=126  Identities=33%  Similarity=0.446  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013334          296 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDEL--QQQLEKERNLKSEDATRAFENVKLEM  373 (445)
Q Consensus       296 l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~--~~~~~~e~~~~~eel~~~~~~lkee~  373 (445)
                      -.-+++.+++++.++.++++..+++++.++....++...+.+.. ...|+.+  .+.+..+...+.+++.+++..++.+.
T Consensus       271 ~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke-~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek  349 (446)
T KOG4438|consen  271 AKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKE-ILELEDQIELNQLELEKLKMFENLTKQLNELKKEK  349 (446)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456888999999999999999999999888888888777644 4455555  44566666777899999999999888


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHH
Q 013334          374 ESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVE  424 (445)
Q Consensus       374 e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~  424 (445)
                      ..-.++...+..  +.+.+.++.+..+.+.++....+-+..+..+|..+..
T Consensus       350 ~~~~Qd~~~r~~--E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~  398 (446)
T KOG4438|consen  350 ESRRQDLENRKT--ESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKK  398 (446)
T ss_pred             HHHHHHHHHhhH--HHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHH
Confidence            888777776544  6677788887777777888777777777777765543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.33  E-value=0.016  Score=67.78  Aligned_cols=79  Identities=14%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHcCCCCCCCc--------ccccCCCcchHHHHH---HHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHH
Q 013334           85 YSMVKEVVTTVNCPMNFTL--------KDLIRPDATRTEYFL---SAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELE  153 (445)
Q Consensus        85 ~~~~~~~l~~~gv~~DFt~--------~DL~~P~~~R~~~iL---SalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~  153 (445)
                      ++-+..+|...|+. .=++        ..|+.-.|.-.+.++   +|+.-|-.=++.....+....+.++.+......+.
T Consensus       121 ~~dI~~l~~~~gi~-~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~  199 (1163)
T COG1196         121 LKDIQDLLADSGIG-KESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELE  199 (1163)
T ss_pred             HHHHHHHHHhcCCC-CCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888874 2222        255555666656665   45555555555555555555555554444445555


Q ss_pred             HHHHHHHHHHH
Q 013334          154 DKISQLNAEIA  164 (445)
Q Consensus       154 ~~i~~l~~~~~  164 (445)
                      .++..|..+..
T Consensus       200 ~~l~~L~~q~~  210 (1163)
T COG1196         200 KQLEKLERQAE  210 (1163)
T ss_pred             HHHHHHHHHHH
Confidence            55555554433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.32  E-value=0.013  Score=69.77  Aligned_cols=52  Identities=21%  Similarity=0.330  Sum_probs=23.4

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334          176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV  227 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~  227 (445)
                      .+.++...+++|.+++.+|....+..+....+++..+.++...++.+...+.
T Consensus      1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444443333

>PRK01156 chromosome segregation protein; Provisional

Probab=98.27  E-value=0.017  Score=65.76  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=17.9

Q ss_pred             cccccCCCcchHHHHHHHHHHHHhhHh
Q 013334          103 LKDLIRPDATRTEYFLSAILNFCLYKD  129 (445)
Q Consensus       103 ~~DL~~P~~~R~~~iLSalINF~rFre  129 (445)
                      +..|+.-+|.--+.+|.-++++-.|..
T Consensus       140 ~~~l~~~~~~~r~~~ld~~~~~~~~~~  166 (895)
T PRK01156        140 MDSLISGDPAQRKKILDEILEINSLER  166 (895)
T ss_pred             hHHHHhCCHHHHHHHHHHHhChHHHHH
Confidence            344554445555678888888888854

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.26  E-value=0.0099  Score=62.46  Aligned_cols=17  Identities=12%  Similarity=0.198  Sum_probs=10.7

Q ss_pred             HHHHHHHcCCCCCCCcc
Q 013334           88 VKEVVTTVNCPMNFTLK  104 (445)
Q Consensus        88 ~~~~l~~~gv~~DFt~~  104 (445)
                      +..--..||+.-.|.|+
T Consensus        95 v~~~g~V~G~S~pFqf~  111 (546)
T PF07888_consen   95 VDQKGEVRGASTPFQFR  111 (546)
T ss_pred             ECCCccEEEecCCcccC
Confidence            34445567775578776

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00606 rad50 rad50

Probab=98.25  E-value=0.023  Score=67.28  Aligned_cols=81  Identities=14%  Similarity=0.206  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHhhhh-----cCHHHHHH
Q 013334          181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE------KFSQTEFDLVQSVQQNADLRSKIV-----QSPEKLQR  249 (445)
Q Consensus       181 ~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~------~l~~~~~~l~~l~qe~~~L~~~Iv-----~SPe~lk~  249 (445)
                      +.+...+..++..+......+...+..++.+...+..      .|..+..++..+...++.|.+.+.     .|++.|+.
T Consensus       750 ~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~  829 (1311)
T TIGR00606       750 RNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQ  829 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHH
Confidence            3444555555555554444444445555444433321      223334555555555555554322     46677777


Q ss_pred             HHHHHHHHHHHH
Q 013334          250 TLEEKKSIREEA  261 (445)
Q Consensus       250 ~l~e~k~~~~~l  261 (445)
                      .+...+..+..+
T Consensus       830 ei~~~~~el~~l  841 (1311)
T TIGR00606       830 EKQEKQHELDTV  841 (1311)
T ss_pred             HHHHHHHHHHHH
Confidence            777776666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.23  E-value=0.01  Score=61.83  Aligned_cols=217  Identities=13%  Similarity=0.200  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----------
Q 013334          203 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDA-EKLAMQ-----------  270 (445)
Q Consensus       203 ~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~-e~~~~q-----------  270 (445)
                      .+.+....+++++...+..++.++..+.+++-.++..+..+-+.++..+-+..+.+-.++-. -..++.           
T Consensus       332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~  411 (581)
T KOG0995|consen  332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATN  411 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccc
Confidence            45556666666666666666666666666666666666666666666665555554333321 000100           


Q ss_pred             --hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 013334          271 --SFQE--KTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDE  346 (445)
Q Consensus       271 --~~q~--k~~~~e~~~k~~~~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e  346 (445)
                        ++..  +....+.+.-.          -..+++..+..-.++...+.+...+++.......++-++..+..+.+..++
T Consensus       412 ~~d~k~~V~~~l~el~~ei----------~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~  481 (581)
T KOG0995|consen  412 GVDLKSYVKPLLKELLDEI----------SEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKE  481 (581)
T ss_pred             cccchhHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0000  00001111100          112222333333344444444444444333334455556666666666666


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 013334          347 LQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  426 (445)
Q Consensus       347 ~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~  426 (445)
                      .........+..++.+.+++..++.......          ......++.++...+.+....+.+++++......+...|
T Consensus       482 e~eee~~k~~~E~e~le~~l~~l~l~~~~~m----------~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i  551 (581)
T KOG0995|consen  482 EAEEEWKKCRKEIEKLEEELLNLKLVLNTSM----------KEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQI  551 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555566666666666555554442          233445556666666777777777777766666666555


Q ss_pred             HHhHhhhhhhccc
Q 013334          427 QQYTNSIGTLLPV  439 (445)
Q Consensus       427 ~~Y~~~~~~~~~~  439 (445)
                      -..+..|...|+.
T Consensus       552 ~~~k~~iqs~le~  564 (581)
T KOG0995|consen  552 SDFKVSIQSSLEN  564 (581)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.21  E-value=0.015  Score=68.04  Aligned_cols=27  Identities=11%  Similarity=0.213  Sum_probs=13.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 013334          408 GAAKLQELASKAEEIVEKFQQYTNSIG  434 (445)
Q Consensus       408 ~e~ei~~i~~~y~~l~~~~~~Y~~~~~  434 (445)
                      +-.+.......|..|.+....+.....
T Consensus       968 Aiee~e~~~~r~~~l~~~~~dl~~a~~  994 (1163)
T COG1196         968 AIEEYEEVEERYEELKSQREDLEEAKE  994 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555544444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.20  E-value=0.03  Score=65.92  Aligned_cols=256  Identities=18%  Similarity=0.195  Sum_probs=138.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334          179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR  258 (445)
Q Consensus       179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~  258 (445)
                      ++..+...+...+..+......++.....+..++..+...++....++..+..++..|..++..|-..+...-.-....-
T Consensus        91 ~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~  170 (1822)
T KOG4674|consen   91 QLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQ  170 (1822)
T ss_pred             hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566666666666666667777777777777777777777777777777888887777777665553222222211


Q ss_pred             HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH
Q 013334          259 EEARDAEKLAMQSF-QEKTTTLEVYQKTLKKMSKQSAQMQAILEQ-VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIE  336 (445)
Q Consensus       259 ~~l~~~e~~~~q~~-q~k~~~~e~~~k~~~~l~~~~~~l~~~~e~-~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e  336 (445)
                      ...-+.. .-.+.+ |++........=..+++++-...+..+..+ ......++..+..++..+..-+...+.|..+..+
T Consensus       171 s~~vs~q-~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~e  249 (1822)
T KOG4674|consen  171 SEDVSSQ-LKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEE  249 (1822)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1100100 000000 122111111111222333322233333222 1112222222322232222222223333333333


Q ss_pred             HHHHHHHHHHHHH--------------HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 013334          337 RQGKVEQLDELQQ--------------QLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTK  402 (445)
Q Consensus       337 ~q~k~e~l~e~~~--------------~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~  402 (445)
                      +..+++.+-..+.              +.-....+..+-+.....++..++.+-.+.+.......+.......+....+.
T Consensus       250 Ls~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~  329 (1822)
T KOG4674|consen  250 LSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLK  329 (1822)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3333333333322              22222233445555566777777777778888877777888888888888899


Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 013334          403 FVKESGAAKLQELASKAEEIVEKFQQYTNSIGT  435 (445)
Q Consensus       403 ~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~  435 (445)
                      .++............++.+|.+.+..=.+....
T Consensus       330 e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~  362 (1822)
T KOG4674|consen  330 ELEQSLSKLNEKLEKKVSRLEGELEDANDSLSA  362 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            999999999999999999999888776665544

>TIGR00606 rad50 rad50

Probab=98.20  E-value=0.032  Score=66.08  Aligned_cols=33  Identities=12%  Similarity=0.152  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhhHHHHHHhc-HHHHHHHHHHHHH
Q 013334          389 AVVTEVDAITSKTKFVKESG-AAKLQELASKAEE  421 (445)
Q Consensus       389 ~~~~~v~~le~~~~~~~~~~-e~ei~~i~~~y~~  421 (445)
                      .+.+.+..++.++..++... +.+.+.+...|..
T Consensus      1072 ~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrk 1105 (1311)
T TIGR00606      1072 LALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence            33455555555555555555 3455555555544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.16  E-value=0.0087  Score=58.00  Aligned_cols=228  Identities=18%  Similarity=0.267  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334          179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR  258 (445)
Q Consensus       179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~  258 (445)
                      ++.++++++...+.++......+-.++..+++...++...+..+-..+..+........ ..-.||..+.+.+..+....
T Consensus        45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~  123 (294)
T COG1340          45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQ  123 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555543333333333333222 34467888888777664332


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH
Q 013334          259 EEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQ  338 (445)
Q Consensus       259 ~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q  338 (445)
                      ..       +.=+...-...++    -..++.+.+...+...+....++++..+...++.+..+-...+..|-.++.+..
T Consensus       124 ~T-------~~L~~e~E~~lvq----~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~h  192 (294)
T COG1340         124 QT-------SVLTPEEERELVQ----KIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYH  192 (294)
T ss_pred             Hh-------cCCChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00       0000000000111    112244444444444445555555556666666665554444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHH--HHHHH
Q 013334          339 GKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAK--LQELA  416 (445)
Q Consensus       339 ~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~e--i~~i~  416 (445)
                      .+|-.+-+.....+.+++.    +..++..+...+.+...+.-..+..+..+...+..+.......+.....+  ...+.
T Consensus       193 e~m~k~~~~~De~Rkeade----~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~  268 (294)
T COG1340         193 EEMIKLFEEADELRKEADE----LHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAE  268 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444443333333333    33334444444444444444555555555666666666555555555444  22444


Q ss_pred             HHHHHH
Q 013334          417 SKAEEI  422 (445)
Q Consensus       417 ~~y~~l  422 (445)
                      ..|.++
T Consensus       269 ei~EKf  274 (294)
T COG1340         269 EIYEKF  274 (294)
T ss_pred             HHHHHH
Confidence            445444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.02  E-value=0.03  Score=58.96  Aligned_cols=28  Identities=11%  Similarity=0.030  Sum_probs=14.8

Q ss_pred             CCChhhhCCCChhHHHHHHHHHH-HHhcc
Q 013334           25 VITENDLKNPNPDFVSDLYTRLL-IFLDV   52 (445)
Q Consensus        25 ~~t~~dl~~Pt~~~v~~ly~~~l-~~~~~   52 (445)
                      .|.+..|++|..+|-+-.|..-. .+.|+
T Consensus        76 ~F~ayyLPk~~~e~YqfcYv~~~g~V~G~  104 (546)
T PF07888_consen   76 QFQAYYLPKDDDEFYQFCYVDQKGEVRGA  104 (546)
T ss_pred             EECcccCCCCCCCeEEEEEECCCccEEEe
Confidence            45666666666655554444444 44343

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=98.02  E-value=0.023  Score=57.73  Aligned_cols=234  Identities=14%  Similarity=0.162  Sum_probs=118.1

Q ss_pred             HHHHHHHHhhcCC--CCCChhhhCCCChhHHHHHHHHHHHHhc--ccC----cccchhcchHhhhcCCCc----------
Q 013334           11 ATEIVTILTETEI--AVITENDLKNPNPDFVSDLYTRLLIFLD--VLH----EDDQGQLDFAALEQLENP----------   72 (445)
Q Consensus        11 ~~EIv~~L~~~~i--~~~t~~dl~~Pt~~~v~~ly~~~l~~~~--~~~----~e~~~~~~~~~~~~l~~p----------   72 (445)
                      ..+|+.+|.+-||  | ++...+..|+.--.+.||.|+-.+++  ++.    ++..    +..+..+-||          
T Consensus       110 ~~~I~~yL~engfd~p-is~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV----~~~lKnL~YPfl~sI~kSql  184 (622)
T COG5185         110 QEEIYDYLKENGFDIP-ISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEV----YQILKNLRYPFLESINKSQL  184 (622)
T ss_pred             HHHHHHHHHHcCCCcc-hhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHH----HHHHHhcCCchhhhhhHhHh
Confidence            4689999988766  5 88899999999999999999876663  211    1111    1122223333          


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHH--HHHHHHH-HHHhhHhhhhhhhHHHHHHHHh
Q 013334           73 -----DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE--YFLSAIL-NFCLYKDTKMNLLRPIAEDLTR  144 (445)
Q Consensus        73 -----e~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~--~iLSalI-NF~rFre~~~~~~~~~~~e~~~  144 (445)
                           .....-++.+-+...+..-+..|--+ -.|+--  .....|.+  -++-++. -|.+|-+.- +.+.+...++..
T Consensus       185 sAI~ph~Wp~iLgMlhW~V~li~~~~~~~~~-~~tl~q--q~~~e~~Vek~lfdY~~~~Y~~fl~~~-~~~~~~e~Elk~  260 (622)
T COG5185         185 SAIGPHNWPKILGMLHWMVRLIIKLDMCLQP-LKTLDQ--QDRYELMVEKLLFDYFTESYKSFLKLE-DNYEPSEQELKL  260 (622)
T ss_pred             hccCCcchHHHHHHHHHHHHHHHHHHHHHhh-hchHhh--ccHHHHHHHHHHHHHHHHHHHHHhcCC-CccCchHHHHHH
Confidence                 22333344444444443333444333 222211  00111211  1223333 234443221 112222222221


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHH----HHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334          145 LDE-QRSELEDKISQLNAEIAAYNEV----RERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  219 (445)
Q Consensus       145 l~~-~~~~l~~~i~~l~~~~~~~~~~----~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l  219 (445)
                      .-+ ....+-..|+.++.++..+-.+    .+.. ..++.++.+...|+.....+..--..+......+-..+..|...|
T Consensus       261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s-~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~ei  339 (622)
T COG5185         261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS-QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEI  339 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            111 1112222333333333333221    1111 245677778888888777776665566666666666666777777


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhc---CHHHHHHHHHHH
Q 013334          220 SQTEFDLVQSVQQNADLRSKIVQ---SPEKLQRTLEEK  254 (445)
Q Consensus       220 ~~~~~~l~~l~qe~~~L~~~Iv~---SPe~lk~~l~e~  254 (445)
                      +..+.++..++..++.|+.+|-.   ||+.++....+.
T Consensus       340 e~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er  377 (622)
T COG5185         340 ELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQER  377 (622)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            77777777777777777766543   676666544443

>PRK03918 chromosome segregation protein; Provisional

Probab=98.02  E-value=0.052  Score=61.70  Aligned_cols=19  Identities=11%  Similarity=0.113  Sum_probs=6.9

Q ss_pred             HHHhhhhHHHHHHHHHHHH
Q 013334          216 DEKFSQTEFDLVQSVQQNA  234 (445)
Q Consensus       216 ~~~l~~~~~~l~~l~qe~~  234 (445)
                      ..++..+...+.++...+.
T Consensus       404 ~~~i~~l~~~~~~~~~~i~  422 (880)
T PRK03918        404 EEEISKITARIGELKKEIK  422 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.95  E-value=0.061  Score=60.24  Aligned_cols=65  Identities=20%  Similarity=0.273  Sum_probs=35.5

Q ss_pred             ccCC----CcchHHHHHHHHH---HHHhhHhh-hhh----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          106 LIRP----DATRTEYFLSAIL---NFCLYKDT-KMN----LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR  170 (445)
Q Consensus       106 L~~P----~~~R~~~iLSalI---NF~rFre~-~~~----~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~  170 (445)
                      +-+|    +.++-|.||+..=   +|-.|-.. .+.    .|..+.+..+...+.......++.-+.+++.+.+.+.
T Consensus       175 veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~  251 (1074)
T KOG0250|consen  175 VENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKL  251 (1074)
T ss_pred             CCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            5577    6777778887653   56666332 333    3333444444444444455555666666666554433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.92  E-value=0.1  Score=61.82  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=35.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 013334          176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ  231 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~q  231 (445)
                      .+..+..++..|+++=.-+...+..|..+++.+-.+...+...+.++.+....+..
T Consensus       739 k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~  794 (1822)
T KOG4674|consen  739 KLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEE  794 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666667777777777766666666555555444433

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.91  E-value=0.04  Score=59.22  Aligned_cols=19  Identities=11%  Similarity=0.387  Sum_probs=12.3

Q ss_pred             CcchHHHHHHHHHHHHhhHh
Q 013334          110 DATRTEYFLSAILNFCLYKD  129 (445)
Q Consensus       110 ~~~R~~~iLSalINF~rFre  129 (445)
                      ++.| +.+|.-|.|.-.|..
T Consensus       149 ~~er-~~il~~l~~~~~~~~  167 (562)
T PHA02562        149 APAR-RKLVEDLLDISVLSE  167 (562)
T ss_pred             hHhH-HHHHHHHhCCHHHHH
Confidence            3444 677777888666644

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.88  E-value=0.035  Score=55.15  Aligned_cols=66  Identities=12%  Similarity=0.174  Sum_probs=38.2

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334          176 LVQEVDAKVKELRQTIQDLNKH-QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV  241 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~-q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv  241 (445)
                      .|..|+.+|..|..+|..+... ..........|..+...+...|..+..+...+.-++.++...+.
T Consensus        19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~   85 (312)
T PF00038_consen   19 KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE   85 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence            5778888999999999888776 33344455556666666666666665555555555555554443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.85  E-value=0.028  Score=53.68  Aligned_cols=113  Identities=15%  Similarity=0.242  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 013334          303 VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLE---KERNLKSEDATRAFENVKLEMESKRQD  379 (445)
Q Consensus       303 ~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~---~e~~~~~eel~~~~~~lkee~e~~~~~  379 (445)
                      ...+.++.+.+..+...|.....+...+..++.+++..+..+...++.+.   .....+.+....++..|...+......
T Consensus       112 e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~R  191 (237)
T PF00261_consen  112 ERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENR  191 (237)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555556666666666666666777777788877777777776533   334456777777888888887777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHH
Q 013334          380 LEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQEL  415 (445)
Q Consensus       380 ~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i  415 (445)
                      .+.....+..++..++.++..+...+..+..=-..+
T Consensus       192 ae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  192 AEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666555554433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.81  E-value=0.078  Score=57.26  Aligned_cols=25  Identities=28%  Similarity=0.222  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334          225 DLVQSVQQNADLRSKIVQSPEKLQR  249 (445)
Q Consensus       225 ~l~~l~qe~~~L~~~Iv~SPe~lk~  249 (445)
                      .+..+..+...|+..+-.-|.=+..
T Consensus       199 ~l~~l~~~~~~l~~~~~~iP~l~~~  223 (569)
T PRK04778        199 ILDQLEEELAALEQIMEEIPELLKE  223 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555444444444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.81  E-value=0.071  Score=59.93  Aligned_cols=118  Identities=17%  Similarity=0.232  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013334          311 KDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---KSEDATRAFENVKLEMESKRQDLEARQKKV  387 (445)
Q Consensus       311 ~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~---~~eel~~~~~~lkee~e~~~~~~e~~~~~~  387 (445)
                      .++..+...+...+..+..++.++.++...++.+++..+.+......   +..+++..+.+..+       .+.......
T Consensus       921 ~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~-------~~~E~k~~~  993 (1293)
T KOG0996|consen  921 ADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEE-------SLKEIKKEL  993 (1293)
T ss_pred             HHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            33433344444444444556666666666666666654444333322   33333333333222       222223333


Q ss_pred             HHHHHHHHHHHhhHHHHHH---hcHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 013334          388 EAVVTEVDAITSKTKFVKE---SGAAKLQELASKAEEIVEKFQQYTNSIGT  435 (445)
Q Consensus       388 e~~~~~v~~le~~~~~~~~---~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~  435 (445)
                      ..+...+..+...+++++.   .++..+.++..++..+.+.+..|-..+..
T Consensus       994 ~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~ 1044 (1293)
T KOG0996|consen  994 RDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKK 1044 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCc
Confidence            3444455555555555554   47788888888888888888888765543

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.77  E-value=0.1  Score=57.88  Aligned_cols=16  Identities=19%  Similarity=0.279  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHcCC
Q 013334           82 MKLYSMVKEVVTTVNC   97 (445)
Q Consensus        82 l~~~~~~~~~l~~~gv   97 (445)
                      +.-+..+..||..+|+
T Consensus       121 ~a~~~~vq~lF~SVqL  136 (1174)
T KOG0933|consen  121 LAQNSKVQDLFCSVQL  136 (1174)
T ss_pred             eCchhHHHHHHHHhcc
Confidence            4566778888888775

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.77  E-value=0.036  Score=52.97  Aligned_cols=68  Identities=15%  Similarity=0.233  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334          182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR  249 (445)
Q Consensus       182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~  249 (445)
                      ......++++..|++.-..+..+++...........++..+.............|..+...+-+++..
T Consensus        29 ~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~   96 (237)
T PF00261_consen   29 KRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEE   96 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34444555555555555556666666677777777777777777777777777777766666655543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.70  E-value=0.21  Score=58.84  Aligned_cols=75  Identities=15%  Similarity=0.240  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 013334          179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE  253 (445)
Q Consensus       179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e  253 (445)
                      .++..+................+......++.........+..+...+..+.+.+..|...+-+.|..|...|..
T Consensus       473 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~  547 (1201)
T PF12128_consen  473 QADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRK  547 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHh
Confidence            344455555555556666666677777777777888888888888889999999999999999999999888843

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.67  E-value=0.13  Score=55.63  Aligned_cols=18  Identities=22%  Similarity=0.200  Sum_probs=9.7

Q ss_pred             cHHHHHHHHHHHHHHHHH
Q 013334          408 GAAKLQELASKAEEIVEK  425 (445)
Q Consensus       408 ~e~ei~~i~~~y~~l~~~  425 (445)
                      ..+|++.+......|..|
T Consensus       415 ~kneL~~a~ekld~mgth  432 (1265)
T KOG0976|consen  415 AKNELQEALEKLDLMGTH  432 (1265)
T ss_pred             HHHHHHHHHHHHHHHhHH
Confidence            345555555555555555

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.55  E-value=0.13  Score=55.44  Aligned_cols=63  Identities=17%  Similarity=0.241  Sum_probs=29.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334          176 LVQEVDAKVKELRQTIQDLNKHQVSL----RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  238 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~q~~l----~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~  238 (445)
                      .++.+..+...+..++..++.....+    ......++.+...+......+..++..++.++..+..
T Consensus       182 ~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~  248 (562)
T PHA02562        182 QIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM  248 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444455555555554443332322    2334444444444445555555555555555544443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.53  E-value=0.28  Score=55.96  Aligned_cols=27  Identities=19%  Similarity=0.176  Sum_probs=15.4

Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334          401 TKFVKESGAAKLQELASKAEEIVEKFQ  427 (445)
Q Consensus       401 ~~~~~~~~e~ei~~i~~~y~~l~~~~~  427 (445)
                      ..++...+..++..+..+...|...+.
T Consensus       467 ~~e~i~~~~~~i~~l~~~i~~l~~~~~  493 (895)
T PRK01156        467 SNHIINHYNEKKSRLEEKIREIEIEVK  493 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666666666666665554

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=97.46  E-value=0.17  Score=51.71  Aligned_cols=243  Identities=14%  Similarity=0.156  Sum_probs=109.1

Q ss_pred             CCCCCCCCHHHHHHHHhhcCCC---CCChhhhCCCChh---HHHHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHH
Q 013334            3 KFDYPRLSATEIVTILTETEIA---VITENDLKNPNPD---FVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHV   76 (445)
Q Consensus         3 ~~~FP~l~~~EIv~~L~~~~i~---~~t~~dl~~Pt~~---~v~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~   76 (445)
                      .|.|-.==-.|+++||..+..|   .++.+.|..-+|.   .+-+.+-|.+...-.+  +.+-++..    .++..+.++
T Consensus       153 ~f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~~~--~~~~~~~~----tl~qq~~~e  226 (622)
T COG5185         153 GFGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLIIKL--DMCLQPLK----TLDQQDRYE  226 (622)
T ss_pred             CCCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHHHH--HHHHhhhc----hHhhccHHH
Confidence            3455555568999999998664   5788888665664   3444455555111111  12222222    122223444


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHH----HHHHHHHHHH-hhHhhhhhhhHHHHHHHHhHHHHHHH
Q 013334           77 RSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----YFLSAILNFC-LYKDTKMNLLRPIAEDLTRLDEQRSE  151 (445)
Q Consensus        77 ~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~----~iLSalINF~-rFre~~~~~~~~~~~e~~~l~~~~~~  151 (445)
                      -++.-+-|-..|...+.-+...      |=+.|--+-+.    .+--+|.|=+ +.+++--. +.+.+.+...+.+.++.
T Consensus       227 ~~Vek~lfdY~~~~Y~~fl~~~------~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~-l~e~i~ea~k~s~~i~~  299 (622)
T COG5185         227 LMVEKLLFDYFTESYKSFLKLE------DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDN-LYEKIQEAMKISQKIKT  299 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC------CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            4444444444454444444332      11234322222    2222222211 11111111 11222233333333333


Q ss_pred             HHHHHHHHH-------HHHHHHHHHHHhccchh-------HhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 013334          152 LEDKISQLN-------AEIAAYNEVRERELPLV-------QEVDAKVKELRQTIQDLNKHQVS---LRTTLNKLKEKTGA  214 (445)
Q Consensus       152 l~~~i~~l~-------~~~~~~~~~~~~~~~~~-------~el~~e~~~L~~~L~~l~~~q~~---l~~~~~~lk~e~~~  214 (445)
                      +.++...|.       .....++.+-+.-...+       ...+.+.+.|++..-+|..+-..   -..+++....++.+
T Consensus       300 l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~  379 (622)
T COG5185         300 LREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREK  379 (622)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            444433333       33333333322222223       33334444444444444333221   12556666777777


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334          215 LDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR  258 (445)
Q Consensus       215 l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~  258 (445)
                      |...++...-+...+...+..-.-.+..+.+.|-..+-+..+.+
T Consensus       380 L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~  423 (622)
T COG5185         380 LTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI  423 (622)
T ss_pred             HHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776666666666665555555555555555554444443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.45  E-value=0.48  Score=56.48  Aligned_cols=54  Identities=9%  Similarity=0.159  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhh
Q 013334           75 HVRSVQIMKLYSMVKEVVTT-VNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKM  132 (445)
Q Consensus        75 ~~~s~~~l~~~~~~~~~l~~-~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~  132 (445)
                      |.-++.-+...+..+.||+- ||.+-.+...|..++...|-..|=.|    +.||..+.
T Consensus       242 ~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~  296 (1486)
T PRK04863        242 NRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELY  296 (1486)
T ss_pred             HHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHH
Confidence            44455556666667777766 67654566667777777776665555    56664443

>PRK11637 AmiB activator; Provisional

Probab=97.41  E-value=0.22  Score=51.86  Aligned_cols=20  Identities=10%  Similarity=0.204  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013334          145 LDEQRSELEDKISQLNAEIA  164 (445)
Q Consensus       145 l~~~~~~l~~~i~~l~~~~~  164 (445)
                      +..+.++++.++.+++.++.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~   64 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVR   64 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.24  E-value=0.37  Score=50.94  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=55.8

Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------ccchhHhHHHHHHHHHHH
Q 013334          133 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER----------------------ELPLVQEVDAKVKELRQT  190 (445)
Q Consensus       133 ~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~----------------------~~~~~~el~~e~~~L~~~  190 (445)
                      ..+..+-+.+....++...|+++...|...+..++..--.                      ......+++.++..|+.+
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e  121 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE  121 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3455566777777777777777777777777776542211                      111233444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      +.+|.+.-...........++.......+.+++.++..+...+..|.
T Consensus       122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le  168 (546)
T KOG0977|consen  122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE  168 (546)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence            55555544444444444444444444444555544444444444443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.24  E-value=0.43  Score=51.58  Aligned_cols=96  Identities=13%  Similarity=0.154  Sum_probs=57.3

Q ss_pred             HHHHHHhhcCCCCC--ChhhhCCCChhHHHHHHHHHHHHhcc-cCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHH
Q 013334           13 EIVTILTETEIAVI--TENDLKNPNPDFVSDLYTRLLIFLDV-LHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVK   89 (445)
Q Consensus        13 EIv~~L~~~~i~~~--t~~dl~~Pt~~~v~~ly~~~l~~~~~-~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~   89 (445)
                      =|+..|+.+|. .|  ..+.|..=||+.+..+-.+||..++- .+.++..          ..|..   ...-+++...+-
T Consensus         7 ii~~~L~~~g~-~~~~~~~sl~~ft~e~~v~~~~~cL~~I~p~~~~~l~~----------~lP~~---msaRfr~~~~lA   72 (594)
T PF05667_consen    7 IIIHSLRQIGC-DIPEDVQSLKQFTTELLVEAVVRCLRVIDPSLGSSLPR----------SLPPG---MSARFRVGTSLA   72 (594)
T ss_pred             HHHHHHHHcCC-cccCCcccHhhCCHHHHHHHHHHHHHHhCccccCCCcc----------cCChH---HHHHHHHHHHHH
Confidence            46778999987 35  33345677899999999999944432 1111111          11211   111123333344


Q ss_pred             HHHHHcCCCCCCCcccccCCCcchHHHHHHHHH
Q 013334           90 EVVTTVNCPMNFTLKDLIRPDATRTEYFLSAIL  122 (445)
Q Consensus        90 ~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalI  122 (445)
                      ..++.+|++.|.++..++.|...=+|++|..||
T Consensus        73 ~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLi  105 (594)
T PF05667_consen   73 QACKELGYRGDIGYQTFLYPNEKDLRRLLMFLI  105 (594)
T ss_pred             HHHHHcCCCCCCcchhhccCChHHHHHHHHHHH
Confidence            556666875577788888887777777777776

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.23  E-value=0.59  Score=52.92  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hhhhcCHHHHHHHHHHHHHHHHHHH
Q 013334          199 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR---SKIVQSPEKLQRTLEEKKSIREEAR  262 (445)
Q Consensus       199 ~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~---~~Iv~SPe~lk~~l~e~k~~~~~l~  262 (445)
                      .++..++..+..+-..+...+..+...+..++.++++.+   +.+-..|++....+.++...+..|.
T Consensus       387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~  453 (1293)
T KOG0996|consen  387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLE  453 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHH
Confidence            334444444444444444444444444455555544444   3355677777777777766654443

>PRK11637 AmiB activator; Provisional

Probab=97.22  E-value=0.36  Score=50.25  Aligned_cols=18  Identities=17%  Similarity=0.248  Sum_probs=8.1

Q ss_pred             cccccCCCcchHHHHHHH
Q 013334          103 LKDLIRPDATRTEYFLSA  120 (445)
Q Consensus       103 ~~DL~~P~~~R~~~iLSa  120 (445)
                      |.--.+|..--++-++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~   26 (428)
T PRK11637          9 MTRAVKPRRFAIRPILYA   26 (428)
T ss_pred             ccccccchhhhhhhHHHH
Confidence            344445544444444443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.18  E-value=0.26  Score=47.80  Aligned_cols=265  Identities=19%  Similarity=0.281  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-ccc---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334          152 LEDKISQLNAEIAAYNEVRER-ELP---LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV  227 (445)
Q Consensus       152 l~~~i~~l~~~~~~~~~~~~~-~~~---~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~  227 (445)
                      ++++|+-|+.+|..++..-.. +..   .+.-+...|.+|...|+ ||  -++|...+..|..+.+.|..+-.-+.+.+.
T Consensus         4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lK-Ln--eE~ltkTi~qy~~QLn~L~aENt~L~SkLe   80 (305)
T PF14915_consen    4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLK-LN--EETLTKTIFQYNGQLNVLKAENTMLNSKLE   80 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-hh--HHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence            455566666666555442111 111   12223334444443332 22  235566666666666666666666666666


Q ss_pred             HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHH-------
Q 013334          228 QSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ-------SFQEKTTTLEVYQKTLKKMSKQS-------  293 (445)
Q Consensus       228 ~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e~~~~q-------~~q~k~~~~e~~~k~~~~l~~~~-------  293 (445)
                      .-++-.++|++.|-.--.+|-+++-+-.....--++.+ .|+|       .+|.+.+         -++|...       
T Consensus        81 ~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdle-lafqr~rdEw~~lqdkmn---------~d~S~lkd~ne~Ls  150 (305)
T PF14915_consen   81 KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLE-LAFQRARDEWVRLQDKMN---------SDVSNLKDNNEILS  150 (305)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH-HHHHHHhhHHHHHHHHhc---------chHHhHHHHhHHHH
Confidence            66666666666666666666666655433221111111 1222       2233221         1122111       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHH
Q 013334          294 AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLE---KERNLKSEDATRAFENVK  370 (445)
Q Consensus       294 ~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~---~e~~~~~eel~~~~~~lk  370 (445)
                      .++...+...++++.   ++-.+.+-|.+.......++.-+.+.+.++.+++..+....   ..-..+-+-++..+..+.
T Consensus       151 QqLskaesK~nsLe~---elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Qlq  227 (305)
T PF14915_consen  151 QQLSKAESKFNSLEI---ELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQ  227 (305)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123444444333322   22233444444455556677778888888888877765422   233335566677777777


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHh----cHH-------HHHHHHHHHHHHHHHHHHhHhh
Q 013334          371 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES----GAA-------KLQELASKAEEIVEKFQQYTNS  432 (445)
Q Consensus       371 ee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~----~e~-------ei~~i~~~y~~l~~~~~~Y~~~  432 (445)
                      ++--..++.++......+..+..|-+|.+...+.-..    .++       .-+++..+|..|...+-.|=.+
T Consensus       228 sEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE  300 (305)
T PF14915_consen  228 SENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE  300 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            7777777888777776766677777776665444333    222       2345778888888888888543

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.05  E-value=0.77  Score=51.01  Aligned_cols=123  Identities=20%  Similarity=0.279  Sum_probs=57.3

Q ss_pred             CCCcchHHHHHHHHHHHHhhHhhhhhhh-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 013334          108 RPDATRTEYFLSAILNFCLYKDTKMNLL-----------RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPL  176 (445)
Q Consensus       108 ~P~~~R~~~iLSalINF~rFre~~~~~~-----------~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~  176 (445)
                      .-+..|+-+-|++.=+-..|--.+++-+           ..+..++.++..+...++..|+.++-.+.....       .
T Consensus       265 ~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~-------~  337 (775)
T PF10174_consen  265 EADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ-------E  337 (775)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------H
Confidence            3446677677888777777755554321           122223333333333333334433333322222       2


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      ..-|..++..|..+|-.-+.........+..+..+++.+..+|+++...+.....++..|.
T Consensus       338 ~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq  398 (775)
T PF10174_consen  338 AEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ  398 (775)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345556666666665555544444444444444444444444444444433333333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.97  E-value=0.87  Score=50.24  Aligned_cols=104  Identities=15%  Similarity=0.198  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHHHHHHHHhhHHHHHHhcHHH
Q 013334          339 GKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK-------VEAVVTEVDAITSKTKFVKESGAAK  411 (445)
Q Consensus       339 ~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~-------~e~~~~~v~~le~~~~~~~~~~e~e  411 (445)
                      ..++.+++..+++.+-+...--+++.+++.++..+.+..+..++-+.-       |......+..+.+++.+.+..-..-
T Consensus       472 ~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ss  551 (1243)
T KOG0971|consen  472 GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESS  551 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344555555666666666666777777777766665555555543332       2233445555666655555432221


Q ss_pred             HH---------HHHHHHHHHHHHHHHhHhhhhhhcccccc
Q 013334          412 LQ---------ELASKAEEIVEKFQQYTNSIGTLLPVTEI  442 (445)
Q Consensus       412 i~---------~i~~~y~~l~~~~~~Y~~~~~~~~~~~~~  442 (445)
                      ..         .-.-.|..+.+.-+.|-.-+..-|-.+++
T Consensus       552 eees~q~~s~~~et~dyk~~fa~skayaraie~QlrqiEv  591 (1243)
T KOG0971|consen  552 EEESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIEV  591 (1243)
T ss_pred             HHHhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            11         22345666666667776666655555443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.94  E-value=0.96  Score=50.29  Aligned_cols=211  Identities=19%  Similarity=0.237  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh----------hhhcCHHHHHHHH
Q 013334          182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS----------KIVQSPEKLQRTL  251 (445)
Q Consensus       182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~----------~Iv~SPe~lk~~l  251 (445)
                      ..+..-+......+.....+..++..-+.+...+..++..+.......++.++.|+.          .+....|+|...+
T Consensus       273 k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl  352 (775)
T PF10174_consen  273 KQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL  352 (775)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            333444444444444444555555555555556666666666666655666666542          2444555666666


Q ss_pred             HHHHHHHHHHHHHHHHH---HHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HH
Q 013334          252 EEKKSIREEARDAEKLA---MQSFQEK-TTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD--VV  325 (445)
Q Consensus       252 ~e~k~~~~~l~~~e~~~---~q~~q~k-~~~~e~~~k~~~~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~--~~  325 (445)
                      ++....+++....--.+   +.+++.- ...-+.+.+...+++.....++.+.+.   +++-.+.+...+.+|..+  ..
T Consensus       353 e~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~---l~ekd~ql~~~k~Rl~~~~d~~  429 (775)
T PF10174_consen  353 EEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQ---LREKDRQLDEEKERLSSQADSS  429 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccccc
Confidence            66555553322111000   1111111 112223333334444433344444433   234455555555555510  00


Q ss_pred             hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013334          326 LDKSLEAKLIERQGKV----EQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVD  395 (445)
Q Consensus       326 ~~~~L~~kl~e~q~k~----e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~  395 (445)
                      ....+..++.++....    ..+++.......++...++..+.++..++..+.....++..+.........++.
T Consensus       430 ~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s  503 (775)
T PF10174_consen  430 NEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEAS  503 (775)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence            1112233333333333    333333333344555555666666666666666666666555544444433333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.87  E-value=1  Score=49.61  Aligned_cols=25  Identities=20%  Similarity=0.151  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          327 DKSLEAKLIERQGKVEQLDELQQQL  351 (445)
Q Consensus       327 ~~~L~~kl~e~q~k~e~l~e~~~~~  351 (445)
                      ...|..-|...|.|-.+|+..+.+.
T Consensus       589 ~e~L~~aL~amqdk~~~LE~sLsaE  613 (697)
T PF09726_consen  589 TEVLMSALSAMQDKNQHLENSLSAE  613 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            4456666667777778887777653

; GO: 0016021 integral to membrane

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.87  E-value=0.6  Score=46.80  Aligned_cols=12  Identities=0%  Similarity=0.136  Sum_probs=9.6

Q ss_pred             HHHHHHHHcCCC
Q 013334           87 MVKEVVTTVNCP   98 (445)
Q Consensus        87 ~~~~~l~~~gv~   98 (445)
                      ++..||..+||.
T Consensus        15 sL~~FL~~~~I~   26 (325)
T PF08317_consen   15 SLQDFLNMTGIR   26 (325)
T ss_pred             CHHHHHHHhCce
Confidence            477899999984

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.85  E-value=1.1  Score=49.79  Aligned_cols=11  Identities=9%  Similarity=0.235  Sum_probs=6.9

Q ss_pred             HHHHHHHcCCC
Q 013334           88 VKEVVTTVNCP   98 (445)
Q Consensus        88 ~~~~l~~~gv~   98 (445)
                      +-.+|...|+.
T Consensus       121 vvnLLESAGFS  131 (1200)
T KOG0964|consen  121 VVNLLESAGFS  131 (1200)
T ss_pred             HHHHHHhcCcc
Confidence            34667777764

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.81  E-value=0.74  Score=47.14  Aligned_cols=19  Identities=21%  Similarity=0.366  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013334          148 QRSELEDKISQLNAEIAAY  166 (445)
Q Consensus       148 ~~~~l~~~i~~l~~~~~~~  166 (445)
                      ++++.+.+|+++.+.+...
T Consensus        39 ~l~q~q~ei~~~~~~i~~~   57 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQ   57 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455666666666555544

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.80  E-value=1.4  Score=49.92  Aligned_cols=25  Identities=20%  Similarity=-0.043  Sum_probs=14.6

Q ss_pred             hhCCCChhHHHHHHHHHHHHhcccC
Q 013334           30 DLKNPNPDFVSDLYTRLLIFLDVLH   54 (445)
Q Consensus        30 dl~~Pt~~~v~~ly~~~l~~~~~~~   54 (445)
                      -|.=|+..==..|++.+...||.+.
T Consensus        66 fI~G~NGSGKSAIltAl~lglG~rA   90 (1074)
T KOG0250|consen   66 FIVGNNGSGKSAILTALTLGLGGRA   90 (1074)
T ss_pred             EeecCCCCcHHHHHHHHHHhhcccc
Confidence            4445555445567776666776543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.79  E-value=1.8  Score=51.12  Aligned_cols=46  Identities=17%  Similarity=0.350  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013334          328 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM  373 (445)
Q Consensus       328 ~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~  373 (445)
                      ..++.++..+..++..++..+..+...-.....++...+..+...+
T Consensus       819 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~  864 (1201)
T PF12128_consen  819 PELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQL  864 (1201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556666666666666666555555555555555544444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.78  E-value=1.1  Score=48.56  Aligned_cols=23  Identities=13%  Similarity=0.391  Sum_probs=12.7

Q ss_pred             cchhHhHHHHHHHHHHHHHHHHH
Q 013334          174 LPLVQEVDAKVKELRQTIQDLNK  196 (445)
Q Consensus       174 ~~~~~el~~e~~~L~~~L~~l~~  196 (445)
                      .|....++.....++........
T Consensus       164 G~a~~~le~~l~~~e~~f~~f~~  186 (569)
T PRK04778        164 GPALDELEKQLENLEEEFSQFVE  186 (569)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666655554443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=1.3  Score=49.52  Aligned_cols=12  Identities=33%  Similarity=0.634  Sum_probs=7.0

Q ss_pred             CCCcc-cccCCCc
Q 013334          100 NFTLK-DLIRPDA  111 (445)
Q Consensus       100 DFt~~-DL~~P~~  111 (445)
                      ..|+. |+|.|.+
T Consensus       647 sVTl~GDV~dP~G  659 (1174)
T KOG0933|consen  647 SVTLEGDVYDPSG  659 (1174)
T ss_pred             eeeecCceeCCCC
Confidence            34443 8888853

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.75  E-value=1.1  Score=48.04  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 013334          180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL----DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK  255 (445)
Q Consensus       180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l----~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k  255 (445)
                      ....+..|..+|..++...............+...+    ......+...+.....++..|+..+ .+-..|+..+..-+
T Consensus       170 ~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~  248 (522)
T PF05701_consen  170 NEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEAS  248 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            344556666666666655554333222222222222    2344455555555666666666655 44444444444333


Q ss_pred             H
Q 013334          256 S  256 (445)
Q Consensus       256 ~  256 (445)
                      .
T Consensus       249 ~  249 (522)
T PF05701_consen  249 A  249 (522)
T ss_pred             H
Confidence            3

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.63  E-value=1.2  Score=47.17  Aligned_cols=27  Identities=15%  Similarity=0.053  Sum_probs=18.2

Q ss_pred             HhhhhHHHHHHHHHHHHHHHhhhhcCH
Q 013334          218 KFSQTEFDLVQSVQQNADLRSKIVQSP  244 (445)
Q Consensus       218 ~l~~~~~~l~~l~qe~~~L~~~Iv~SP  244 (445)
                      -++++.|....-++++..+..+....|
T Consensus       209 Lleel~f~~~~h~~eI~e~~~~~~rd~  235 (546)
T KOG0977|consen  209 LLEELAFLKRIHKQEIEEERRKARRDT  235 (546)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence            344566666666677777777777666

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.56  E-value=0.00058  Score=75.58  Aligned_cols=50  Identities=8%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 013334          379 DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ  428 (445)
Q Consensus       379 ~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~  428 (445)
                      ++.............+..++......+...+.|.+-|...|..+.-.++.
T Consensus       623 e~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~~g~~~~~  672 (713)
T PF05622_consen  623 EIQALKKQLQEKDRRIESLEKELEKSKQMREQEEKLIVSAWYNLGMRLHR  672 (713)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455556667778888888888888888888888888887766654

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.45  E-value=0.86  Score=43.33  Aligned_cols=29  Identities=14%  Similarity=0.185  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 013334          226 LVQSVQQNADLRSKIVQSPEKLQRTLEEK  254 (445)
Q Consensus       226 l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~  254 (445)
                      |..+..+..+|.+++-.-|+.|+....++
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~   40 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAEL   40 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34556666667777666666666554444

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.40  E-value=1.1  Score=43.82  Aligned_cols=12  Identities=42%  Similarity=0.495  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHH
Q 013334          158 QLNAEIAAYNEV  169 (445)
Q Consensus       158 ~l~~~~~~~~~~  169 (445)
                      .+...+.++..+
T Consensus        17 ~lk~~~~e~~ek   28 (294)
T COG1340          17 QLKEEIEELKEK   28 (294)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.39  Score=50.84  Aligned_cols=44  Identities=18%  Similarity=0.330  Sum_probs=37.4

Q ss_pred             CCCCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH
Q 013334            3 KFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL   47 (445)
Q Consensus         3 ~~~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l   47 (445)
                      -+|+--++++||+.++.++|-|-+-..|. +|-|++|.+|=..|=
T Consensus       269 ~~S~r~~~~~eVve~I~~lG~PvvVAtDV-tp~P~~V~KiAasf~  312 (652)
T COG2433         269 LESRRGIDRSEVVEFISELGKPVVVATDV-TPAPETVKKIAASFN  312 (652)
T ss_pred             eeccccCCHHHHHHHHHHcCCceEEEccC-CCChHHHHHHHHHcC
Confidence            36788899999999999999986666664 688999999988887

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.14  E-value=3.4  Score=47.04  Aligned_cols=30  Identities=13%  Similarity=0.287  Sum_probs=13.6

Q ss_pred             chHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Q 013334          112 TRTEYFLSAILNFCLYKDTKMNLLRPIAED  141 (445)
Q Consensus       112 ~R~~~iLSalINF~rFre~~~~~~~~~~~e  141 (445)
                      .+++.++-.|=||+-=...-.+.++.+.++
T Consensus      1471 ~el~~Li~~v~~Flt~~~adp~si~~vA~~ 1500 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDADPDSIEEVAEE 1500 (1758)
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            344455555555554443333444444433

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=96.14  E-value=1.9  Score=44.23  Aligned_cols=60  Identities=18%  Similarity=0.242  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 013334          367 ENVKLEMESKR-QDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  426 (445)
Q Consensus       367 ~~lkee~e~~~-~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~  426 (445)
                      ..++.+++... ..++-..++.+..+.+.-.+...-+......-.|-+.+...|.+|+.++
T Consensus       466 Q~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv  526 (527)
T PF15066_consen  466 QQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV  526 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            33444444332 4455555566666777777777777888888899999999999999876

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.13  E-value=2.9  Score=46.19  Aligned_cols=54  Identities=13%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334          174 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV  227 (445)
Q Consensus       174 ~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~  227 (445)
                      ...+.+++.+|+.|+.++..|.+....=+..+..+..+..+....-..++.++.
T Consensus       459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~  512 (697)
T PF09726_consen  459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQ  512 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777888888888777765544444444444444444333334444443

; GO: 0016021 integral to membrane

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.07  E-value=3.8  Score=46.98  Aligned_cols=59  Identities=19%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          179 EVDAKVKELRQTIQDLNKHQVSL-RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       179 el~~e~~~L~~~L~~l~~~q~~l-~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      +|+.....++.+..+|++.|.++ ...+..+.....+...++..+...+..+..+.+.++
T Consensus       469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q  528 (1317)
T KOG0612|consen  469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ  528 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555433322 233333344444444444444444444444444443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.03  E-value=3.2  Score=45.72  Aligned_cols=68  Identities=12%  Similarity=0.239  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 013334          156 ISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF  224 (445)
Q Consensus       156 i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~  224 (445)
                      ++.|...+..+........ ....+..+..+++.++..+......+..+...++.+...+..++..+..
T Consensus       184 ~~~L~~dl~~~~~~~~~~~-~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       184 IDRLAGDLTNVLRRRKKSE-LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444433332222 2334445556666666655555555555555555555555554444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.00  E-value=3.9  Score=46.55  Aligned_cols=31  Identities=10%  Similarity=0.071  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013334          204 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNA  234 (445)
Q Consensus       204 ~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~  234 (445)
                      .+..+-.++++....|.+.+.-+...+..+.
T Consensus      1512 qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1512 QIQQLTGEIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHhhhhhHH
Confidence            3444444455555555555555554444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.91  E-value=3.2  Score=44.80  Aligned_cols=42  Identities=14%  Similarity=0.129  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHH
Q 013334          222 TEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD  263 (445)
Q Consensus       222 ~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~  263 (445)
                      +...+..++.+...|+..+-.=|.=+...-...-.++++++.
T Consensus       192 A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~  233 (560)
T PF06160_consen  192 AREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKE  233 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence            344455556666666666666665555544444444444443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=3.6  Score=44.92  Aligned_cols=47  Identities=21%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      +..+|.....|..+++.+..++..|..+|-+....+.+.+.+++.+.
T Consensus       432 iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~  478 (1118)
T KOG1029|consen  432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVT  478 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhh
Confidence            33344444444444444444444444444444444444444444333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=95.77  E-value=2.1  Score=41.54  Aligned_cols=63  Identities=21%  Similarity=0.285  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHH
Q 013334          201 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS-KIVQSPEKLQRTLEEKKSIREEARD  263 (445)
Q Consensus       201 l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~-~Iv~SPe~lk~~l~e~k~~~~~l~~  263 (445)
                      +....+........+...+..+...+..+..++..+.. .-..+|..|.+.+.+-...+.+++.
T Consensus        78 l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~  141 (264)
T PF06008_consen   78 LNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRK  141 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            44445555555555555555555555555555555554 4466888899888888888777654

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.68  E-value=2.7  Score=42.15  Aligned_cols=44  Identities=7%  Similarity=0.151  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334          384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ  427 (445)
Q Consensus       384 ~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~  427 (445)
                      ..+...+.+++..++......+.--..|+..+...|..|.+..+
T Consensus       250 ~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~g  293 (325)
T PF08317_consen  250 EEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTG  293 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHC
Confidence            33333344444444444444444456788888888888887654

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.62  E-value=4.5  Score=44.34  Aligned_cols=259  Identities=18%  Similarity=0.208  Sum_probs=132.5

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 013334          176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK  255 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k  255 (445)
                      .+..++...+.++.+|..|+..+..+..+...+..-++.+.+++.+.+-++.++..+..+|...+.---+.+.+.-++++
T Consensus        93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~  172 (1265)
T KOG0976|consen   93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH  172 (1265)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            45566677777777777777777777777777777777777777777777777777777766665555555555554444


Q ss_pred             HHHHHHHHHH-------------HHH----HHhH-----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 013334          256 SIREEARDAE-------------KLA----MQSF-----------QEKTTTLEVYQKTLKKM---SKQSAQMQAILEQVN  304 (445)
Q Consensus       256 ~~~~~l~~~e-------------~~~----~q~~-----------q~k~~~~e~~~k~~~~l---~~~~~~l~~~~e~~~  304 (445)
                      ..-.++-...             ..+    .+.|           +.....-+.-.++++.+   +.+..-|..+..-..
T Consensus       173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s  252 (1265)
T KOG0976|consen  173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCS  252 (1265)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhH
Confidence            3221111110             000    0011           00000000011111111   111111222222222


Q ss_pred             HHHHHHHHHHHHH----HhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h-----------HHHHHHHH
Q 013334          305 SAKSIEKDYKSLK----ARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---K-----------SEDATRAF  366 (445)
Q Consensus       305 ~~k~~e~~~k~lk----~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~---~-----------~eel~~~~  366 (445)
                      .+++..-.+.++.    .+..+|....+.|...+.+....+..+.+.+..+...+..   .           ...+++++
T Consensus       253 ~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqk  332 (1265)
T KOG0976|consen  253 MIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQK  332 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            2222222222222    1222333333445555555555555555555544433332   2           23344555


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---hhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 013334          367 ENVKLEMESKRQDLEARQKKVEAVVTEVDAIT---SKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG  434 (445)
Q Consensus       367 ~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le---~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~  434 (445)
                      .+++-++-+.++..+-.......++++-+...   +.+.+.+++.+.+.+.+...-..+..+|+.--+-|.
T Consensus       333 adirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if  403 (1265)
T KOG0976|consen  333 ADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF  403 (1265)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            66666666666666665555555555555443   456777888888899888888888888766555443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.58  E-value=3.3  Score=42.52  Aligned_cols=70  Identities=19%  Similarity=0.324  Sum_probs=51.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 013334          178 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL  247 (445)
Q Consensus       178 ~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~l  247 (445)
                      .+.+.+...+..+|....+....|...+..++.+...+...|......+..+.+.|+.+...+...+..-
T Consensus        41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3455667777777777777777777778888888888877777777777777777777777776666554

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.48  E-value=6.4  Score=45.16  Aligned_cols=26  Identities=8%  Similarity=0.322  Sum_probs=15.8

Q ss_pred             CcccccCCCcchHHHHHHHHHHHHhh
Q 013334          102 TLKDLIRPDATRTEYFLSAILNFCLY  127 (445)
Q Consensus       102 t~~DL~~P~~~R~~~iLSalINF~rF  127 (445)
                      .|.++++-+|+--..+|+.+.|.-.|
T Consensus       144 e~~~fl~~~~~er~~il~~l~~l~~~  169 (908)
T COG0419         144 EFDAFLKSKPKERKEILDELFGLEKY  169 (908)
T ss_pred             hHHHHHhcCcHHHHHHHHHHhCchhH
Confidence            34555555666556667777666664

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.48  E-value=1.6  Score=38.13  Aligned_cols=17  Identities=29%  Similarity=0.495  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013334          150 SELEDKISQLNAEIAAY  166 (445)
Q Consensus       150 ~~l~~~i~~l~~~~~~~  166 (445)
                      ..++++|..|.++++..
T Consensus        20 dsle~~v~~LEreLe~~   36 (140)
T PF10473_consen   20 DSLEDHVESLERELEMS   36 (140)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            44555555555554444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.40  E-value=1.7  Score=37.96  Aligned_cols=9  Identities=22%  Similarity=0.368  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 013334          149 RSELEDKIS  157 (445)
Q Consensus       149 ~~~l~~~i~  157 (445)
                      ...++.++.
T Consensus        26 v~~LEreLe   34 (140)
T PF10473_consen   26 VESLERELE   34 (140)
T ss_pred             HHHHHHHHH
Confidence            333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.29  E-value=5.4  Score=43.24  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=23.6

Q ss_pred             HHHHHHhhcCC-CCCChhhhCCCChhHHHHHHHHHH
Q 013334           13 EIVTILTETEI-AVITENDLKNPNPDFVSDLYTRLL   47 (445)
Q Consensus        13 EIv~~L~~~~i-~~~t~~dl~~Pt~~~v~~ly~~~l   47 (445)
                      .|+..+.++|+ ..+.-..+.=|+..-++.||.+++
T Consensus        70 ~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLi  105 (594)
T PF05667_consen   70 SLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLI  105 (594)
T ss_pred             HHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHH
Confidence            35555666666 356666677777777777777777

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.20  E-value=2.6  Score=38.99  Aligned_cols=88  Identities=24%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013334          150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS  229 (445)
Q Consensus       150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l  229 (445)
                      .++..+++.+..++.-++.-.......+...+....+|-+-|...+..--.|+..+..++.....+..++.+.+.++..+
T Consensus        22 ~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~  101 (194)
T PF15619_consen   22 AELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKT  101 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444433332222222333333334444444444444444455555555555555555555555555555


Q ss_pred             HHHHHHHH
Q 013334          230 VQQNADLR  237 (445)
Q Consensus       230 ~qe~~~L~  237 (445)
                      ..++.+|+
T Consensus       102 ~~~l~~L~  109 (194)
T PF15619_consen  102 KDELKHLK  109 (194)
T ss_pred             HHHHHHHH
Confidence            55555544

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=95.17  E-value=5.8  Score=42.85  Aligned_cols=67  Identities=16%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhh
Q 013334          366 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI  433 (445)
Q Consensus       366 ~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~  433 (445)
                      +..|+..++.....++.... .+.+...+..-+..+..+-..-+++|+.+...+..+...=..|...+
T Consensus       407 leeL~~~L~e~qkll~ekk~-~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQV  473 (786)
T PF05483_consen  407 LEELKKILAEKQKLLDEKKQ-FEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQV  473 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34444444444433333222 44444444444555555556666666666666655555555554433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.12  E-value=5.4  Score=42.26  Aligned_cols=106  Identities=16%  Similarity=0.175  Sum_probs=60.1

Q ss_pred             ccCCCcchHHHHHHHHHH-HHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHH
Q 013334          106 LIRPDATRTEYFLSAILN-FCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKV  184 (445)
Q Consensus       106 L~~P~~~R~~~iLSalIN-F~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~  184 (445)
                      ...|+|.....++.+++. |+.+.-...  ......-...+..+...++.++...+.++.+++.+...-.|.      ..
T Consensus       128 ~~~~dP~~Aa~i~n~l~~~yi~~~~~~~--~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~------~~  199 (498)
T TIGR03007       128 YEDKDPELAKDVVQTLLTIFVEETLGSK--RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD------QE  199 (498)
T ss_pred             eeCCCHHHHHHHHHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc------ch
Confidence            457999999999999886 655532211  122223444556667778888888888877775433211111      11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334          185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  219 (445)
Q Consensus       185 ~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l  219 (445)
                      ..+..++..++........++...+.....+...+
T Consensus       200 ~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l  234 (498)
T TIGR03007       200 GDYYSEISEAQEELEAARLELNEAIAQRDALKRQL  234 (498)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            23344555555555555555555555555554443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.05  E-value=3.5  Score=39.74  Aligned_cols=50  Identities=18%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 013334          205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK  254 (445)
Q Consensus       205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~  254 (445)
                      .+.+..+..++..++.+...++..+..+|..|+..|+.=-+.|+.....|
T Consensus        61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm  110 (265)
T COG3883          61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM  110 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444555555555555666655555555555444444

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=95.02  E-value=2.3  Score=37.47  Aligned_cols=57  Identities=12%  Similarity=0.193  Sum_probs=28.4

Q ss_pred             HHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Q 013334           87 MVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLT  143 (445)
Q Consensus        87 ~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~  143 (445)
                      +++.-+...|++.+....|-..+.+.....++..|---+.-|+.-+...+.+.+..-
T Consensus         6 yiN~~L~s~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~   62 (151)
T PF11559_consen    6 YINQQLLSRGYPSDGLLFDSAEESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLR   62 (151)
T ss_pred             HHHHHHHHCCCCCCCccCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677876343333333234455555555544444555554444444444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.96  E-value=0.073  Score=59.12  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHH-cCC--CCCCCccccc----CCCcchHHHHHHHH
Q 013334           77 RSVQIMKLYSMVKEVVTT-VNC--PMNFTLKDLI----RPDATRTEYFLSAI  121 (445)
Q Consensus        77 ~s~~~l~~~~~~~~~l~~-~gv--~~DFt~~DL~----~P~~~R~~~iLSal  121 (445)
                      ..-++-.+++.+..|... +|-  . +|++-|+.    +|++.=+.++|--|
T Consensus        68 r~~NLk~l~~~i~~yy~e~L~~~i~-~~~~Pd~~~Iae~~d~~El~kLL~Ll  118 (713)
T PF05622_consen   68 RVSNLKKLLRNIKSYYQEELGQQIS-EMPLPDLQAIAENSDPEELKKLLQLL  118 (713)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT------TTT---HHHHHTT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcC-cCCCCCHHHHHhCCCHHHHHHHHHHH
Confidence            445566788888888886 442  3 45554433    46666566665544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.95  E-value=8  Score=43.34  Aligned_cols=81  Identities=15%  Similarity=0.111  Sum_probs=48.8

Q ss_pred             HHHHHHHHcCCCCCCCccc-----ccCCCcchHHHHHHHHHHHH-hhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013334           87 MVKEVVTTVNCPMNFTLKD-----LIRPDATRTEYFLSAILNFC-LYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLN  160 (445)
Q Consensus        87 ~~~~~l~~~gv~~DFt~~D-----L~~P~~~R~~~iLSalINF~-rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~  160 (445)
                      .+..|...+.|. ...-..     ...|+|.+...++.++++.. .+.-..  ..+....-...+..+...++.++....
T Consensus       138 ~~~~l~~~L~V~-~~~~s~ii~Is~~~~dP~~Aa~iaN~la~~Y~~~~~~~--k~~~~~~a~~~L~~ql~~l~~~l~~aE  214 (754)
T TIGR01005       138 VLKKMREKLNVF-GVEKTRIIAIEFRSEDPKLAAAIPDAIAAAYIAGQGAA--KSESNTAAADFLAPEIADLSKQSRDAE  214 (754)
T ss_pred             HHHHHHhcceEE-ecCccEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555553 333222     34789999999999999643 332111  123333445556667777777777777


Q ss_pred             HHHHHHHHHH
Q 013334          161 AEIAAYNEVR  170 (445)
Q Consensus       161 ~~~~~~~~~~  170 (445)
                      .+++.++.+.
T Consensus       215 ~~l~~fk~~~  224 (754)
T TIGR01005       215 AEVAAYRAQS  224 (754)
T ss_pred             HHHHHHHHHc
Confidence            7777776643

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.86  E-value=2.5  Score=37.08  Aligned_cols=79  Identities=24%  Similarity=0.303  Sum_probs=41.6

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHhhhhcCHHHHHHHHH
Q 013334          176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV---QSVQQNADLRSKIVQSPEKLQRTLE  252 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~---~l~qe~~~L~~~Iv~SPe~lk~~l~  252 (445)
                      .+.+++.++..+..+|..|++.-..+..+++.+..........++.......   .+...+.-|+..+-.|-.+|+...+
T Consensus        22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~e  101 (143)
T PF12718_consen   22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTE  101 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555566666666665555666666666666666665555444333   3444444444444444444444443


Q ss_pred             HH
Q 013334          253 EK  254 (445)
Q Consensus       253 e~  254 (445)
                      .+
T Consensus       102 kl  103 (143)
T PF12718_consen  102 KL  103 (143)
T ss_pred             HH
Confidence            33

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK09039 hypothetical protein; Validated

Probab=94.86  E-value=4.2  Score=41.11  Aligned_cols=51  Identities=8%  Similarity=0.162  Sum_probs=23.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 013334          358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG  408 (445)
Q Consensus       358 ~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~  408 (445)
                      +...+...+.+.+..+.+...++.....+++.+.+.+..++..++..+...
T Consensus       117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444433

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=5.6  Score=40.88  Aligned_cols=97  Identities=13%  Similarity=0.145  Sum_probs=66.8

Q ss_pred             HHHHHHhhcCCCCCCh-hhhCCCChhHHHHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 013334           13 EIVTILTETEIAVITE-NDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEV   91 (445)
Q Consensus        13 EIv~~L~~~~i~~~t~-~dl~~Pt~~~v~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~~   91 (445)
                      =|...|...|. .|.+ +++.--||+.|..+..+||...+-+.       .++. .. -.|.....   -+++-..+..-
T Consensus         7 iimh~lrq~g~-sipp~~~lseFTteqvveavvrcL~~Idps~-------q~~~-s~-llp~am~~---Rfrla~siAq~   73 (521)
T KOG1937|consen    7 IIMHALRQLGC-SIPPFEDLSEFTTEQVVEAVVRCLWKIDPSK-------QTIS-SY-LLPKAMTT---RFRLANSIAQY   73 (521)
T ss_pred             HHHHHHHHcCC-CCCCchhHhhcCHHHHHHHHHHHHHhcCccc-------cccc-cc-cCchHHHH---HHHHHHHHHHH
Confidence            46778899897 5777 89999999999999999995554211       1100 00 12322221   23455556677


Q ss_pred             HHHcCCCCCCCcccccCCCcchHHHHHHHHH
Q 013334           92 VTTVNCPMNFTLKDLIRPDATRTEYFLSAIL  122 (445)
Q Consensus        92 l~~~gv~~DFt~~DL~~P~~~R~~~iLSalI  122 (445)
                      +++.|++.|.++--.+.|...-+|.+|=.+|
T Consensus        74 ckdlgyrgD~gyqtfLypn~~dlR~ll~fLi  104 (521)
T KOG1937|consen   74 CKDLGYRGDTGYQTFLYPNINDLRSLLIFLI  104 (521)
T ss_pred             HHHcCCCcccchhheecCCcccHHHHHHHHH
Confidence            7888998899999999998888888776666

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=94.77  E-value=7  Score=41.83  Aligned_cols=30  Identities=13%  Similarity=0.288  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334          191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFS  220 (445)
Q Consensus       191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~  220 (445)
                      |..-+.++.....++...+.+...+..++.
T Consensus       118 le~~~~q~~~~~~eL~~~k~EL~~lr~e~~  147 (522)
T PF05701_consen  118 LESAREQYASAVAELDSVKQELEKLRQELA  147 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444443333333

Several sequences in this family are described as being myosin heavy chain-like.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.64  E-value=2.9  Score=36.71  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 013334          327 DKSLEAKLIERQGKVEQLDELQQ  349 (445)
Q Consensus       327 ~~~L~~kl~e~q~k~e~l~e~~~  349 (445)
                      ...|..+...|..+++.+..+++
T Consensus       117 v~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen  117 VKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHH
Confidence            34555555556666665555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=94.62  E-value=9.9  Score=42.88  Aligned_cols=15  Identities=13%  Similarity=0.144  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 013334          334 LIERQGKVEQLDELQ  348 (445)
Q Consensus       334 l~e~q~k~e~l~e~~  348 (445)
                      ..++..+++.+...+
T Consensus       483 t~el~~~iknlnk~L  497 (1195)
T KOG4643|consen  483 TEELLNQIKNLNKSL  497 (1195)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=8.7  Score=42.13  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          208 LKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      +++.+..+.-+++.+.+.+..+...+-+.+
T Consensus       435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr  464 (1118)
T KOG1029|consen  435 LNAKKKQLQQELETLNFKLQQLSGKLQDVR  464 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence            344444444444444444444444444444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.38  E-value=11  Score=42.20  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=36.0

Q ss_pred             HHHHHhhhhHHH-HHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 013334          371 LEMESKRQDLEA-RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT  435 (445)
Q Consensus       371 ee~e~~~~~~e~-~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~  435 (445)
                      +++.+..++++. .+.+++.+.+-++.+.+.++...+.. ...+..-.+|-.|+.|.+.-+.....
T Consensus       482 EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~-yDrdqTI~KfRelva~Lqdqlqe~~d  546 (1243)
T KOG0971|consen  482 EQLQESNRELELDLREELDMAKGARKELQKRVEAAQETV-YDRDQTIKKFRELVAHLQDQLQELTD  546 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444443 44445555555665655555544432 33445556788888888777766654

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.20  E-value=6.6  Score=39.10  Aligned_cols=12  Identities=0%  Similarity=0.136  Sum_probs=10.0

Q ss_pred             HHHHHHHHcCCC
Q 013334           87 MVKEVVTTVNCP   98 (445)
Q Consensus        87 ~~~~~l~~~gv~   98 (445)
                      ++..||.++||.
T Consensus        11 sL~dFL~~t~I~   22 (312)
T smart00787       11 SLQDFLNMTGIR   22 (312)
T ss_pred             cHHHHHHHcCce
Confidence            578899999985

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.18  E-value=5.7  Score=38.32  Aligned_cols=39  Identities=15%  Similarity=0.292  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334          202 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  240 (445)
Q Consensus       202 ~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I  240 (445)
                      ..+++.+..+..++..++.+...++.++.+++..|+.+|
T Consensus        51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI   89 (265)
T COG3883          51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI   89 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.11  E-value=11  Score=41.49  Aligned_cols=57  Identities=16%  Similarity=0.172  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334          183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  239 (445)
Q Consensus       183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~  239 (445)
                      ....++..+.++--+-+.+.+...+++-+..++..++.........+..+.+.|+.+
T Consensus       658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q  714 (970)
T KOG0946|consen  658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ  714 (970)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444334444445555555555555555555555555555555555544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.09  E-value=17  Score=43.55  Aligned_cols=51  Identities=14%  Similarity=0.107  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 013334          328 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQ  378 (445)
Q Consensus       328 ~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~  378 (445)
                      ..++.++..+..++..+++.+.....+-..+++++...+..+..++....+
T Consensus       899 ~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~  949 (1353)
T TIGR02680       899 AEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAE  949 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555444444444444444444444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=94.06  E-value=13  Score=42.00  Aligned_cols=27  Identities=41%  Similarity=0.661  Sum_probs=15.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334          140 EDLTRLDEQRSELEDKISQLNAEIAAY  166 (445)
Q Consensus       140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~  166 (445)
                      +..-.+..+...+++++..|+.++.+.
T Consensus       198 enll~lr~eLddleae~~klrqe~~e~  224 (1195)
T KOG4643|consen  198 ENLLRLRNELDDLEAEISKLRQEIEEF  224 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334445556666677777666665

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.00  E-value=4.8  Score=36.81  Aligned_cols=57  Identities=12%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       181 ~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      ..++.+|+.-+..+......|......+..+...+..++..+..+-..+..+.+.|+
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk  122 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK  122 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence            445555555555555555555555555555555555555555554444444444444

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.90  E-value=14  Score=41.95  Aligned_cols=74  Identities=20%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013334          150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS  229 (445)
Q Consensus       150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l  229 (445)
                      .+|..+-++|..++.++.. +..   .+.+++...+.|+..|.-+              +.+...+...+.....++...
T Consensus       655 ~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~--------------~~~~~~~k~~l~~~~~El~~~  716 (1141)
T KOG0018|consen  655 DQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYS--------------KLDLEQLKRSLEQNELELQRT  716 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444555433 211   3444445555555554433              233333334455555555666


Q ss_pred             HHHHHHHHhhhh
Q 013334          230 VQQNADLRSKIV  241 (445)
Q Consensus       230 ~qe~~~L~~~Iv  241 (445)
                      ..++....|.|.
T Consensus       717 ~~~i~~~~p~i~  728 (1141)
T KOG0018|consen  717 ESEIDEFGPEIS  728 (1141)
T ss_pred             HHHHHhhCchHH
Confidence            666666666555

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=93.86  E-value=0.017  Score=65.26  Aligned_cols=40  Identities=15%  Similarity=0.132  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 013334          368 NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES  407 (445)
Q Consensus       368 ~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~  407 (445)
                      .|..+++....+++.....+..+.++...+...+++.+..
T Consensus       353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~  392 (859)
T PF01576_consen  353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK  392 (859)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3334444444444444443434444444444444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=93.81  E-value=6.9  Score=37.94  Aligned_cols=92  Identities=14%  Similarity=0.179  Sum_probs=59.5

Q ss_pred             hcCCC-CCChhhhCCCChhHHHHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH-cCC
Q 013334           20 ETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTT-VNC   97 (445)
Q Consensus        20 ~~~i~-~~t~~dl~~Pt~~~v~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~~l~~-~gv   97 (445)
                      .+|+| .|+.+.+..|+-+.|-.|..|++.-++-.     ..++. .   ++..      -.-+.|.+.+-.||-. .+|
T Consensus         2 ~LGypr~iSmenFrtPNF~LVAeiL~WLv~rydP~-----~~i~~-~---i~tE------~dRV~Fik~v~~~~~tKa~I   66 (267)
T PF10234_consen    2 ALGYPRLISMENFRTPNFELVAEILRWLVKRYDPD-----ADIPG-D---IDTE------QDRVFFIKSVAEFMATKARI   66 (267)
T ss_pred             CCCCCCCCcHHHcCCCChHHHHHHHHHHHHHcCCC-----CCCCC-c---CCcH------HHHHHHHHHHHHHHHHHhhe
Confidence            36775 68999999999999999999999554221     11111 1   1111      1225577777777666 456


Q ss_pred             CCCCCcccccCCCcchHH---HHHHHHHHHHhhH
Q 013334           98 PMNFTLKDLIRPDATRTE---YFLSAILNFCLYK  128 (445)
Q Consensus        98 ~~DFt~~DL~~P~~~R~~---~iLSalINF~rFr  128 (445)
                        ..+.+.||--|+.=++   ++-|-|.+-++-.
T Consensus        67 --KLN~KkLY~ADGyAVkELLKia~lLy~A~~~~   98 (267)
T PF10234_consen   67 --KLNPKKLYQADGYAVKELLKIASLLYSAMKSA   98 (267)
T ss_pred             --eecHHHHHHhhHHHHHHHHHHHHHHHHHHhCC
Confidence              5888888888776554   4456666666554

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=13  Score=41.08  Aligned_cols=56  Identities=23%  Similarity=0.434  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          151 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG  213 (445)
Q Consensus       151 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~  213 (445)
                      .++.-|..+..+++.+++       ...++..++++|+.++...+..-.++...++.+|.+..
T Consensus       661 kyK~lI~~lD~~~e~lkQ-------~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  661 KYKGLIRELDYQIENLKQ-------MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444444444444433       23344555555555555555554455555555554444

>TIGR00634 recN DNA repair protein RecN

Probab=93.75  E-value=12  Score=40.49  Aligned_cols=61  Identities=16%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             ccCCCcchHHHHHHHHHHHHhhHhhhhh---hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          106 LIRPDATRTEYFLSAILNFCLYKDTKMN---LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE  168 (445)
Q Consensus       106 L~~P~~~R~~~iLSalINF~rFre~~~~---~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~  168 (445)
                      |++|.  .-+.+|-.+.++..++..-..   .|..+..++..+..+......+++.++.+++++..
T Consensus       140 l~~~~--~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~  203 (563)
T TIGR00634       140 LFRPD--EQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE  203 (563)
T ss_pred             hcCHH--HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            44444  344677766664434333322   33334444444444445555666666666666543

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.72  E-value=6.6  Score=37.43  Aligned_cols=8  Identities=38%  Similarity=0.351  Sum_probs=3.3

Q ss_pred             HHHHHHHH
Q 013334          417 SKAEEIVE  424 (445)
Q Consensus       417 ~~y~~l~~  424 (445)
                      ..|++|..
T Consensus       178 ~~yeri~~  185 (239)
T COG1579         178 SEYERIRK  185 (239)
T ss_pred             HHHHHHHh
Confidence            34444443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=93.71  E-value=6  Score=36.92  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=12.8

Q ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHH
Q 013334          241 VQSPEKLQRTLEEKKSIREEARDAE  265 (445)
Q Consensus       241 v~SPe~lk~~l~e~k~~~~~l~~~e  265 (445)
                      -.++..+.+.+.+.....+++...+
T Consensus        65 ~~~~~~i~~~~~erdq~~~dL~s~E   89 (207)
T PF05010_consen   65 ELSEAEIQKLLKERDQAYADLNSLE   89 (207)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3445555555555555544544444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=93.70  E-value=6.8  Score=37.54  Aligned_cols=97  Identities=19%  Similarity=0.321  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 013334          328 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSED----ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF  403 (445)
Q Consensus       328 ~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~ee----l~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~  403 (445)
                      ..++..+..+..++..|+..+......+...++.    +.+.+.++.+.++........+...+      ++.++.....
T Consensus        88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i------~krl~e~~~~  161 (247)
T PF06705_consen   88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENI------LKRLEEEENR  161 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence            3455555556666666666655555555444333    44455555555555544444433322      3333444444


Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHhH
Q 013334          404 VKESGAAKLQELASKAEEIVEKFQQYT  430 (445)
Q Consensus       404 ~~~~~e~ei~~i~~~y~~l~~~~~~Y~  430 (445)
                      +...++.|...=+..|+.|.++++.+.
T Consensus       162 l~~~i~~Ek~~Re~~~~~l~~~le~~~  188 (247)
T PF06705_consen  162 LQEKIEKEKNTRESKLSELRSELEEVK  188 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=93.65  E-value=14  Score=40.80  Aligned_cols=25  Identities=16%  Similarity=0.157  Sum_probs=10.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          213 GALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       213 ~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      ..+..++..+...+.+......++-
T Consensus       265 ~~Le~ei~~le~e~~e~~~~l~~l~  289 (650)
T TIGR03185       265 EQLERQLKEIEAARKANRAQLRELA  289 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444444443333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=93.43  E-value=0.022  Score=64.31  Aligned_cols=52  Identities=19%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 013334          386 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL  437 (445)
Q Consensus       386 ~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~  437 (445)
                      .+...+..+--++..+..++..++.++..=..++..+......=+.+|...|
T Consensus       483 ~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L  534 (859)
T PF01576_consen  483 ALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL  534 (859)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH
Confidence            3334445555566666677777777666666666666555444444444444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK09039 hypothetical protein; Validated

Probab=93.21  E-value=11  Score=38.22  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013334          145 LDEQRSELEDKISQLNAEIAAY  166 (445)
Q Consensus       145 l~~~~~~l~~~i~~l~~~~~~~  166 (445)
                      |.++......+++.|+.+|.++
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~L   65 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAEL   65 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHH
Confidence            5556666666777777666664

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.20  E-value=2.9  Score=32.16  Aligned_cols=67  Identities=24%  Similarity=0.319  Sum_probs=37.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334          140 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  219 (445)
Q Consensus       140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l  219 (445)
                      +.++.|..+...+-+.|+.|+.++.++              ..+|..|..+...|...-..|..+...+......+.+++
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeL--------------ke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEEL--------------KEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334445555566666666666655544              344444444444444444455566666666666666665


Q ss_pred             h
Q 013334          220 S  220 (445)
Q Consensus       220 ~  220 (445)
                      +
T Consensus        70 ~   70 (72)
T PF06005_consen   70 E   70 (72)
T ss_dssp             H
T ss_pred             h
Confidence            4

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.10  E-value=20  Score=41.16  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334          197 HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  240 (445)
Q Consensus       197 ~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I  240 (445)
                      ....+...+..+.....+....+.++...+..+...+..+...+
T Consensus       397 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~  440 (908)
T COG0419         397 ELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQI  440 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.09  E-value=17  Score=40.24  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334          176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  221 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~  221 (445)
                      ..+.++.+...|+.+|++++-....+-.+|.++.++.-.|...++.
T Consensus        70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~  115 (717)
T PF09730_consen   70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSV  115 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3445566667777777777766667777777777777776665543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=14  Score=39.14  Aligned_cols=50  Identities=24%  Similarity=0.326  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334          308 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL  357 (445)
Q Consensus       308 ~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~  357 (445)
                      .++.+.-.+..++++.-.+......++.++-.-++.=+++-.++.++..+
T Consensus       205 RleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q  254 (772)
T KOG0999|consen  205 RLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQ  254 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34444445566666655555566667777665555555555555555554

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=93.01  E-value=7.4  Score=35.95  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013334          194 LNKHQVSLRTTLNKLKEKTGAL  215 (445)
Q Consensus       194 l~~~q~~l~~~~~~lk~e~~~l  215 (445)
                      |+..|......+..+...-+++
T Consensus        38 Lk~lq~Rq~kAL~k~e~~e~~L   59 (194)
T PF15619_consen   38 LKQLQKRQEKALQKYEDTEAEL   59 (194)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhH
Confidence            3443333333333343333333

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=92.93  E-value=23  Score=41.43  Aligned_cols=14  Identities=29%  Similarity=0.356  Sum_probs=9.5

Q ss_pred             hHHHHHHHHHH-HHh
Q 013334           37 DFVSDLYTRLL-IFL   50 (445)
Q Consensus        37 ~~v~~ly~~~l-~~~   50 (445)
                      .+-..+|..|+ .+.
T Consensus       658 q~~s~~Y~k~Ie~~~  672 (1294)
T KOG0962|consen  658 QGRSALYRKFIEIAC  672 (1294)
T ss_pred             hhHHHHHHHHHHHHh
Confidence            55667788877 554

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.84  E-value=12  Score=37.97  Aligned_cols=79  Identities=18%  Similarity=0.333  Sum_probs=51.0

Q ss_pred             CCCChhHH--HHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCC
Q 013334           32 KNPNPDFV--SDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRP  109 (445)
Q Consensus        32 ~~Pt~~~v--~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P  109 (445)
                      .||..+|.  ..+..|++...|..         |..-...++|..         ....+-.-++.+|++-||...-|-.=
T Consensus        36 ~Np~eQF~~F~~L~~WL~~~~g~~---------f~~p~e~DDPn~---------~~~~Il~~lr~~g~~~df~p~kLk~G   97 (359)
T PF10498_consen   36 TNPGEQFYYFTSLCAWLISKAGRK---------FEQPQEYDDPNA---------TISNILDELRKLGVPVDFPPSKLKQG   97 (359)
T ss_pred             CCchHHHHHHHHHHHHHHHhcCCC---------CCCCcccCCHHH---------HHHHHHHHHHccCCCCCCChHHhhCC
Confidence            36776653  45666666766643         211122355522         12222244667888779999999999


Q ss_pred             CcchHHHHHHHHHHHHhhH
Q 013334          110 DATRTEYFLSAILNFCLYK  128 (445)
Q Consensus       110 ~~~R~~~iLSalINF~rFr  128 (445)
                      -+.-+-.+|.+|.+.+.=+
T Consensus        98 ~Ge~vc~VLd~Lad~AL~~  116 (359)
T PF10498_consen   98 SGEHVCYVLDQLADEALKR  116 (359)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            9999999999999887543

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=92.82  E-value=17  Score=39.50  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          173 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA  214 (445)
Q Consensus       173 ~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~  214 (445)
                      ....+.+|+..-+....-|.+.+..|..|..+++.+|....+
T Consensus       266 s~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~  307 (786)
T PF05483_consen  266 SQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQE  307 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence            334555555555555555666666666666666655555444

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.78  E-value=17  Score=39.61  Aligned_cols=64  Identities=16%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cc--hhHhHHHHHHHHHHHHHHHHHHHH
Q 013334          136 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE-------LP--LVQEVDAKVKELRQTIQDLNKHQV  199 (445)
Q Consensus       136 ~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~-------~~--~~~el~~e~~~L~~~L~~l~~~q~  199 (445)
                      ..+.++...+.++......++..|...+.+++......       .|  ....+..+...|..++..|..+..
T Consensus        32 ~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq  104 (617)
T PF15070_consen   32 QQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ  104 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777788888888888876544321       11  112455556666666655554433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=92.58  E-value=15  Score=38.27  Aligned_cols=62  Identities=11%  Similarity=0.141  Sum_probs=43.8

Q ss_pred             cCCCcchHHHHHHHHHH-HHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          107 IRPDATRTEYFLSAILN-FCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR  170 (445)
Q Consensus       107 ~~P~~~R~~~iLSalIN-F~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~  170 (445)
                      ..|+|.+...++.++++ |..+.-....  .....-...+..+...++.++...+.++..++.+.
T Consensus       139 ~~~dp~~A~~i~n~~~~~y~~~~~~~~~--~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~  201 (444)
T TIGR03017       139 SGVDPRFAATVANAFAQAYIDTNIELKV--EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK  201 (444)
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            46999999999999997 7777443221  22233455566777888888888888888886654

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.51  E-value=4.3  Score=39.00  Aligned_cols=107  Identities=14%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          134 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG  213 (445)
Q Consensus       134 ~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~  213 (445)
                      .+.++...++.|..++.+-+=.++.|...++.-+.+-+.+......|..+|..|-.....|.+....+..++.--.....
T Consensus        19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~   98 (307)
T PF10481_consen   19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN   98 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence            34445555555555555555555555555555544444444444455566666666666666666666666555555555


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334          214 ALDEKFSQTEFDLVQSVQQNADLRSKI  240 (445)
Q Consensus       214 ~l~~~l~~~~~~l~~l~qe~~~L~~~I  240 (445)
                      -+.+.++.....+..+.+++.++++.+
T Consensus        99 ~lEgQl~s~Kkqie~Leqelkr~KsEL  125 (307)
T PF10481_consen   99 FLEGQLNSCKKQIEKLEQELKRCKSEL  125 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666555443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=92.39  E-value=8.9  Score=35.32  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=24.1

Q ss_pred             hcchHhhhcCCCchhH--HHHHHHHHHHHHHHHHHHHcCCC
Q 013334           60 QLDFAALEQLENPDLH--VRSVQIMKLYSMVKEVVTTVNCP   98 (445)
Q Consensus        60 ~~~~~~~~~l~~pe~~--~~s~~~l~~~~~~~~~l~~~gv~   98 (445)
                      .|+|..+.  .+++.+  --++|++.-|..+-.=+..++++
T Consensus        27 ~PHF~pL~--~~~e~~REg~A~Glm~~f~~l~e~v~~l~id   65 (190)
T PF05266_consen   27 SPHFSPLQ--EFKEELREGMAVGLMVTFANLAEKVKKLQID   65 (190)
T ss_pred             CCCChhhh--cCcHHhhhHHHHHHHHHHHHHHHHHHHcccC
Confidence            46776654  333333  23467778888887878888887

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.37  E-value=19  Score=39.07  Aligned_cols=75  Identities=20%  Similarity=0.274  Sum_probs=53.1

Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334          175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE--KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR  249 (445)
Q Consensus       175 ~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~--~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~  249 (445)
                      +...+..+++..|+.....+.+...+++.+...+|.+.+...-  .|.+....|..+..|-++|..++.+-..-+|.
T Consensus       402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkK  478 (961)
T KOG4673|consen  402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKK  478 (961)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4555666777777777777777777888887777776654332  56677888888888888888777665554443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.08  E-value=21  Score=38.96  Aligned_cols=27  Identities=33%  Similarity=0.319  Sum_probs=16.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          326 LDKSLEAKLIERQGKVEQLDELQQQLE  352 (445)
Q Consensus       326 ~~~~L~~kl~e~q~k~e~l~e~~~~~~  352 (445)
                      ..+.|..++.+++.++..+++.++.+.
T Consensus       196 ~~keL~~kl~~l~~~l~~~~e~le~K~  222 (617)
T PF15070_consen  196 VKKELQKKLGELQEKLHNLKEKLELKS  222 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334566666666666666666655443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.00  E-value=10  Score=35.20  Aligned_cols=82  Identities=22%  Similarity=0.327  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHH
Q 013334          156 ISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL---DEKFSQTEFDLVQSVQQ  232 (445)
Q Consensus       156 i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l---~~~l~~~~~~l~~l~qe  232 (445)
                      |..|..++.+++.+.+.....+.++..+|..|...|..+......|...+..+...+..+   ..++...+..+..++.+
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e  108 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE  108 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455554445555556667777777777777777776666666666555554433   23444444444444444


Q ss_pred             HHHHH
Q 013334          233 NADLR  237 (445)
Q Consensus       233 ~~~L~  237 (445)
                      .+-|.
T Consensus       109 ~evL~  113 (201)
T PF13851_consen  109 HEVLE  113 (201)
T ss_pred             HHHHH
Confidence            44443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.98  E-value=26  Score=39.70  Aligned_cols=19  Identities=16%  Similarity=0.219  Sum_probs=8.1

Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q 013334          358 KSEDATRAFENVKLEMESK  376 (445)
Q Consensus       358 ~~eel~~~~~~lkee~e~~  376 (445)
                      ++.+...++..++.++++.
T Consensus       447 r~~~~~~~~~~~k~~~del  465 (1200)
T KOG0964|consen  447 RMEEFDAENTELKRELDEL  465 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=91.91  E-value=21  Score=38.59  Aligned_cols=41  Identities=27%  Similarity=0.501  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          309 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQ  349 (445)
Q Consensus       309 ~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~  349 (445)
                      +.+.+..+...+.+...-.+.+...+.++..++..+++.+.
T Consensus       356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~  396 (560)
T PF06160_consen  356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQE  396 (560)
T ss_pred             HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555556666666666666666655554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=91.83  E-value=25  Score=39.28  Aligned_cols=22  Identities=9%  Similarity=0.312  Sum_probs=12.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHH
Q 013334          176 LVQEVDAKVKELRQTIQDLNKH  197 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~  197 (445)
                      .+.+.+..+..++.++.+-...
T Consensus       359 ~~~q~~~ql~~le~~~~e~q~~  380 (980)
T KOG0980|consen  359 RIEQYENQLLALEGELQEQQRE  380 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHH
Confidence            4455556666666655544443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.54  E-value=21  Score=37.79  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334          180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS  220 (445)
Q Consensus       180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~  220 (445)
                      ++.+.-.|+.+|++++-.-..|-.+|.++.++.-.+...++
T Consensus       147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs  187 (772)
T KOG0999|consen  147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS  187 (772)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            34455556666666665555566666666666555555444

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=91.39  E-value=26  Score=38.55  Aligned_cols=210  Identities=17%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          131 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE  210 (445)
Q Consensus       131 ~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~  210 (445)
                      +........+++..+.+....+.+++........++......---.+.+.+..|-.|-.+.-..+.....|+.++..+..
T Consensus       431 ~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~  510 (698)
T KOG0978|consen  431 QIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEE  510 (698)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013334          211 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMS  290 (445)
Q Consensus       211 e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~  290 (445)
                      .+..+......+...+..++.+...|.+..-.....+.                         ..+..++.+.+.-.++.
T Consensus       511 ~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~-------------------------~~~~~le~~kk~~~e~~  565 (698)
T KOG0978|consen  511 QILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELT-------------------------TLTQSLEMLKKKAQEAK  565 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH-------------------------HHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Q 013334          291 KQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERN--LKSEDATRAFEN  368 (445)
Q Consensus       291 ~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~--~~~eel~~~~~~  368 (445)
                      .....++.-.+.....      +.+++.++.+....+.....+...++..++.|+..+......-.  .-.+-+..++..
T Consensus       566 ~~~~~Lq~~~ek~~~~------le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~  639 (698)
T KOG0978|consen  566 QSLEDLQIELEKSEAK------LEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKE  639 (698)
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHH


Q ss_pred             HHH
Q 013334          369 VKL  371 (445)
Q Consensus       369 lke  371 (445)
                      .++
T Consensus       640 yK~  642 (698)
T KOG0978|consen  640 YKE  642 (698)
T ss_pred             HHh

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=91.38  E-value=23  Score=37.88  Aligned_cols=29  Identities=17%  Similarity=0.134  Sum_probs=11.1

Q ss_pred             HHhhHHHHHHhcHHHHHHHHHHHHHHHHH
Q 013334          397 ITSKTKFVKESGAAKLQELASKAEEIVEK  425 (445)
Q Consensus       397 le~~~~~~~~~~e~ei~~i~~~y~~l~~~  425 (445)
                      +...+...+..+...+..-..+-..|..+
T Consensus       349 ~~ee~~~~~s~~~~k~~~ke~E~q~lr~~  377 (511)
T PF09787_consen  349 YREELSRQKSPLQLKLKEKESEIQKLRNQ  377 (511)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=91.17  E-value=15  Score=35.27  Aligned_cols=43  Identities=21%  Similarity=0.317  Sum_probs=36.9

Q ss_pred             HHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc
Q 013334          397 ITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPV  439 (445)
Q Consensus       397 le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~~~  439 (445)
                      +-..++.++.+...|.++=......|+.+++.|+..|-..|--
T Consensus       202 v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~L~~  244 (247)
T PF06705_consen  202 VLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQDGLRI  244 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence            4455668899999999999999999999999999999887753

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.10  E-value=14  Score=35.08  Aligned_cols=107  Identities=15%  Similarity=0.245  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH
Q 013334          330 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA  409 (445)
Q Consensus       330 L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e  409 (445)
                      +..++.+++....++...+...+.+. ..+.++.++++.|..|...-..++-....-+..++..++    +...-+....
T Consensus         6 ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk----qa~~er~~~~   80 (230)
T PF10146_consen    6 IRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK----QAESERNKRQ   80 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            44444455554445544444444333 566666666666666555544333332222333333333    3344555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhh-hh-hhccccc
Q 013334          410 AKLQELASKAEEIVEKFQQYTNS-IG-TLLPVTE  441 (445)
Q Consensus       410 ~ei~~i~~~y~~l~~~~~~Y~~~-~~-~~~~~~~  441 (445)
                      ..+..++.+|..|..+|+.-..+ ++ ..||.++
T Consensus        81 ~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~  114 (230)
T PF10146_consen   81 EKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLE  114 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence            77788889999999999887777 33 3355544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=90.87  E-value=26  Score=39.21  Aligned_cols=134  Identities=13%  Similarity=0.172  Sum_probs=75.6

Q ss_pred             ccCCCcchHHHHHHHHHH-HHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--hHhHHH
Q 013334          106 LIRPDATRTEYFLSAILN-FCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPL--VQEVDA  182 (445)
Q Consensus       106 L~~P~~~R~~~iLSalIN-F~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~--~~el~~  182 (445)
                      +..|+|.+...++.++++ |+.+.-+..  ......-.+.+.++...++.++...+.++++++.+...-.+.  .+.+-.
T Consensus       234 ~~~~dP~~Aa~ilN~la~~Yi~~~l~~k--~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~  311 (726)
T PRK09841        234 MTGDDPQLITRILNSIANNYLQQNIARQ--AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLE  311 (726)
T ss_pred             EeCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            457999999999999997 776633322  233344566677788888888888888888887654321111  111222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334          183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ  248 (445)
Q Consensus       183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk  248 (445)
                      ...+|++++..+......+...+..--       =.+..+...+..+.++...++.++..-|+.-+
T Consensus       312 ~~~~l~~ql~~l~~~~~~l~~~~~~~h-------P~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~  370 (726)
T PRK09841        312 QIVNVDNQLNELTFREAEISQLYKKDH-------PTYRALLEKRQTLEQERKRLNKRVSAMPSTQQ  370 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccC-------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            334444444444333222222111111       12233334455566677777777777776654

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.77  E-value=8  Score=36.09  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=48.4

Q ss_pred             cccCCCcchHHHHH-HHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHH
Q 013334          105 DLIRPDATRTEYFL-SAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAK  183 (445)
Q Consensus       105 DL~~P~~~R~~~iL-SalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e  183 (445)
                      |+-+-++.=+++=| ||+|--..=.-.+.+.|.++.+.+..+.+...++..+...|..++.++..       ..++++.+
T Consensus        99 DvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~-------e~ee~~er  171 (290)
T COG4026          99 DVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEA-------EYEEVQER  171 (290)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            44444555555543 45543333233344555555555554444444444444434333333221       23333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334          184 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS  220 (445)
Q Consensus       184 ~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~  220 (445)
                      .+.|+-+...|+.....+..++..++.+-.++...++
T Consensus       172 lk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         172 LKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            4444444444444444444445555555555544444

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.77  E-value=35  Score=39.01  Aligned_cols=33  Identities=15%  Similarity=0.047  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhcccccc
Q 013334          410 AKLQELASKAEEIVEKFQQYTNSIGTLLPVTEI  442 (445)
Q Consensus       410 ~ei~~i~~~y~~l~~~~~~Y~~~~~~~~~~~~~  442 (445)
                      ...+.+...|....+..-.|+..+...+.++..
T Consensus       444 ~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d  476 (1141)
T KOG0018|consen  444 HDLDSLESLVSSAEEEPYELNEELVEVLDQLLD  476 (1141)
T ss_pred             hcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence            345555566666666666666666655555443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=90.72  E-value=16  Score=36.14  Aligned_cols=125  Identities=17%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013334          312 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV  391 (445)
Q Consensus       312 ~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~  391 (445)
                      .+..|+.|+..-...-..|...+..+.......++.-.++-....+.+.+.+.+++.|.+++..+..+....+.+|..+.
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll  240 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL  240 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHhhHHHHHHhcH-----------------HHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 013334          392 TEVDAITSKTKFVKESGA-----------------AKLQELASKAEEIVEKFQQYTNSIGTL  436 (445)
Q Consensus       392 ~~v~~le~~~~~~~~~~e-----------------~ei~~i~~~y~~l~~~~~~Y~~~~~~~  436 (445)
                      +.+..++.....+-...+                 +|+..+..+|....+-.+.--.++...
T Consensus       241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l  302 (306)
T PF04849_consen  241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL  302 (306)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=90.26  E-value=11  Score=35.17  Aligned_cols=62  Identities=15%  Similarity=0.254  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334          180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV  241 (445)
Q Consensus       180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv  241 (445)
                      +++++..+.+++..|...-.+...+++...+....+..+.+.+..+.-++-.+..+|+++|.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            56777788888888877777777888888888888888888888888888888888888764

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.11  E-value=33  Score=37.59  Aligned_cols=129  Identities=16%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             HhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          128 KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK  207 (445)
Q Consensus       128 re~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~  207 (445)
                      ..++..+|..++++.....   ..+...|+..+++++++-...-..........+.-.-|+..+..+...-..++..+++
T Consensus        45 e~e~~~~y~~kve~a~~~~---~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~e  121 (660)
T KOG4302|consen   45 EQECLEIYKRKVEEASESK---ARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDE  121 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666655433   5566677777777776644332111010111111224555555555555555555555


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH-HHHHHHHHHHHHHHH
Q 013334          208 LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ-RTLEEKKSIREEARD  263 (445)
Q Consensus       208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk-~~l~e~k~~~~~l~~  263 (445)
                      -+.+..++..+|+.+...+..-    ..+-..+.-+|..|- +.|+++...+.+|..
T Consensus       122 R~~ef~el~~qie~l~~~l~g~----~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~  174 (660)
T KOG4302|consen  122 RRAEFKELYHQIEKLCEELGGP----EDLPSFLIADESDLSLEKLEELREHLNELQK  174 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC----ccCCcccccCcccccHHHHHHHHHHHHHHHH
Confidence            5555555555555555444432    122233444444444 677777777755554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.03  E-value=2.4  Score=39.15  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334          206 NKLKEKTGALDEKFSQTEFDLVQSVQQNADL  236 (445)
Q Consensus       206 ~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L  236 (445)
                      +.++.+...+.-..+.++..+..+..|...|
T Consensus       147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L  177 (194)
T PF08614_consen  147 EILQDELQALQLQLNMLEEKLRKLEEENREL  177 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333344444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.02  E-value=5.5  Score=37.18  Aligned_cols=47  Identities=19%  Similarity=0.206  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 013334          330 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESK  376 (445)
Q Consensus       330 L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~  376 (445)
                      ++.++.+++.++.+++....+...+....+++....+.+|+++....
T Consensus        98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L  144 (206)
T PRK10884         98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL  144 (206)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444433

>TIGR00634 recN DNA repair protein RecN

Probab=90.02  E-value=31  Score=37.25  Aligned_cols=25  Identities=12%  Similarity=0.183  Sum_probs=12.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334          358 KSEDATRAFENVKLEMESKRQDLEA  382 (445)
Q Consensus       358 ~~eel~~~~~~lkee~e~~~~~~e~  382 (445)
                      .++++..++..++.++......+..
T Consensus       347 ~le~L~~el~~l~~~l~~~a~~Ls~  371 (563)
T TIGR00634       347 SLEALEEEVDKLEEELDKAAVALSL  371 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555444444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=90.01  E-value=37  Score=38.04  Aligned_cols=20  Identities=25%  Similarity=0.222  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013334          328 KSLEAKLIERQGKVEQLDEL  347 (445)
Q Consensus       328 ~~L~~kl~e~q~k~e~l~e~  347 (445)
                      +++...+..+..+++.+...
T Consensus       497 e~l~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  497 ESLRQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.72  E-value=10  Score=31.26  Aligned_cols=68  Identities=16%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334          147 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  221 (445)
Q Consensus       147 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~  221 (445)
                      ....+++.++..|+..++..+..       ..+|..+.+.|++.+..|+.+..++......+..+..++...++.
T Consensus         9 as~~el~n~La~Le~slE~~K~S-------~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen    9 ASQNELQNRLASLERSLEDEKTS-------QGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhh-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555554332       223445555555555555555555555555555555554444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF15294 Leu_zip: Leucine zipper

Probab=89.63  E-value=11  Score=36.61  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD  216 (445)
Q Consensus       179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~  216 (445)
                      .|.++|..|+.+|..+.........+...+.....++.
T Consensus       136 rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq  173 (278)
T PF15294_consen  136 RLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQ  173 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666555555444444444444443333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.31  E-value=7  Score=35.12  Aligned_cols=66  Identities=23%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh-hhcCHHHHHHHHHHHHHH
Q 013334          180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK-IVQSPEKLQRTLEEKKSI  257 (445)
Q Consensus       180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~-Iv~SPe~lk~~l~e~k~~  257 (445)
                      +..+++.|+++|..|+..-.     .       .++...+.++..++..+...+..|++- ..-||+.++....+....
T Consensus        91 l~~~~k~l~~eL~~L~~~~t-----~-------~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~  157 (169)
T PF07106_consen   91 LKKEVKSLEAELASLSSEPT-----N-------EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKW  157 (169)
T ss_pred             HHHHHHHHHHHHHHHhcCCC-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            34455555555555554322     1       233334444444444444444445432 224677777655554443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []

Probab=89.20  E-value=17  Score=33.15  Aligned_cols=108  Identities=20%  Similarity=0.278  Sum_probs=68.0

Q ss_pred             chHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHH
Q 013334          112 TRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI  191 (445)
Q Consensus       112 ~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L  191 (445)
                      +.+..+.+.++||..-...-.+.+-++++.     .....+...|..|...+...              ..+...+   +
T Consensus        73 P~ii~~~~~I~~Y~~~f~syY~~L~~~id~-----~~~~~~~~~i~~L~~~i~~~--------------q~~~~~~---i  130 (184)
T PF05791_consen   73 PQIIDLNQDIINYNTTFQSYYDTLVEAIDQ-----KDKEDLKEIIEDLQDQIQKN--------------QDKVQAL---I  130 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----T-HHHHHHHHHHHHHHHHHH--------------HHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCc-----ccHHHHHHHHHHHHHHHHHH--------------HHHHHHH---H
Confidence            367789999999987555444433333311     12344555555565544433              2233333   3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334          192 QDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV  241 (445)
Q Consensus       192 ~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv  241 (445)
                      .+|+.-+..+..+...++.....+..-+..-...+..++.+++.+++.|-
T Consensus       131 ~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~  180 (184)
T PF05791_consen  131 NELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK  180 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            44455555678888889999999999988888888888999888887764

Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=89.14  E-value=61  Score=39.31  Aligned_cols=15  Identities=7%  Similarity=0.036  Sum_probs=8.5

Q ss_pred             HHhhHhhhhhhhHHH
Q 013334          124 FCLYKDTKMNLLRPI  138 (445)
Q Consensus       124 F~rFre~~~~~~~~~  138 (445)
                      |++-.+++...+++.
T Consensus       274 ~~r~~eERR~liEEA  288 (1486)
T PRK04863        274 YMRHANERRVHLEEA  288 (1486)
T ss_pred             HhhCHHHHHHHHHHH
Confidence            455566666655554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.81  E-value=10  Score=34.87  Aligned_cols=117  Identities=19%  Similarity=0.281  Sum_probs=14.6

Q ss_pred             HhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhccchhHhHHHHHHHHHHHHHHHHH
Q 013334          125 CLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR--------ERELPLVQEVDAKVKELRQTIQDLNK  196 (445)
Q Consensus       125 ~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~--------~~~~~~~~el~~e~~~L~~~L~~l~~  196 (445)
                      ++-|+.+-+.|.+++..|..|..+...+......+..+........        ....+.+..+....-.+..+|.++.+
T Consensus         9 L~~Rd~~e~~~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r   88 (194)
T PF08614_consen    9 LRERDRREKAFAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYR   88 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3446666677888888887777766677766666665433221100        01122345566777778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334          197 HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV  241 (445)
Q Consensus       197 ~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv  241 (445)
                      .+..+...+..+..+...+...+......+..+..++..|+.++.
T Consensus        89 ~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~  133 (194)
T PF08614_consen   89 SKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIK  133 (194)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888877777777775553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.72  E-value=20  Score=33.27  Aligned_cols=105  Identities=20%  Similarity=0.286  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 013334          145 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT---TLNKLKEKTGALDEKFSQ  221 (445)
Q Consensus       145 l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~---~~~~lk~e~~~l~~~l~~  221 (445)
                      |.++..+++.+.....+...++......-..++..++.++.+|+..|..+.+...+|..   .+..+..+...+.-+-+-
T Consensus        32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ev  111 (201)
T PF13851_consen   32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEV  111 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444544444444446678889999999999999887776443   333334444444445555


Q ss_pred             hHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334          222 TEFDLVQSVQQNADLRSKIVQSPEKLQR  249 (445)
Q Consensus       222 ~~~~l~~l~qe~~~L~~~Iv~SPe~lk~  249 (445)
                      +...+..+.++.+.|..+-..++..++.
T Consensus       112 L~qr~~kle~ErdeL~~kf~~~i~evqQ  139 (201)
T PF13851_consen  112 LEQRFEKLEQERDELYRKFESAIQEVQQ  139 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555566666666666666555555553

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=88.62  E-value=41  Score=36.67  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=9.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 013334          326 LDKSLEAKLIERQGKVEQLDE  346 (445)
Q Consensus       326 ~~~~L~~kl~e~q~k~e~l~e  346 (445)
                      .+..|++++...+.-...++.
T Consensus       545 ~~~~le~~~~a~qat~d~a~~  565 (961)
T KOG4673|consen  545 LAAALEAQALAEQATNDEARS  565 (961)
T ss_pred             HHHHHHHHHHHHHHhhhhhhh
Confidence            334445554444444444444

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.07  E-value=10  Score=37.87  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=45.5

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334          177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  238 (445)
Q Consensus       177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~  238 (445)
                      ..++.++...|+.+...+.......-..++.+.-+..++.++...+...+.-....+++|+.
T Consensus        73 ~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   73 REELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555666667777777776666777777777777777778888888888888888888874

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=87.99  E-value=0.15  Score=56.67  Aligned_cols=16  Identities=13%  Similarity=0.335  Sum_probs=0.0

Q ss_pred             HHHHHHHhHhhhhhhc
Q 013334          422 IVEKFQQYTNSIGTLL  437 (445)
Q Consensus       422 l~~~~~~Y~~~~~~~~  437 (445)
                      |...++.|...|...|
T Consensus       448 l~~~~~~~~~ele~~l  463 (722)
T PF05557_consen  448 LEQLVDEYKAELEAQL  463 (722)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=87.93  E-value=13  Score=38.12  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334          182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR  258 (445)
Q Consensus       182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~  258 (445)
                      .....+..+|.++...+..|...++.++.+.   ..++.-....+.+-+-..++|+.++-+.-+--+.++..+|..+
T Consensus       212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~---~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeL  285 (395)
T PF10267_consen  212 LGLQKILEELREIKESQSRLEESIEKLKEQY---QREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQEL  285 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666667777777777777776642   2233333344444445556666666666666666666666655

Its function is unknown.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=87.92  E-value=23  Score=33.04  Aligned_cols=119  Identities=15%  Similarity=0.236  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 013334          288 KMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFE  367 (445)
Q Consensus       288 ~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~  367 (445)
                      ++........+++.+..++|.+-..++..          -..|..-+.+...++...+..+.++.......++..+.+|+
T Consensus        84 dL~s~E~sfsdl~~ryek~K~vi~~~k~N----------EE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~  153 (207)
T PF05010_consen   84 DLNSLEKSFSDLHKRYEKQKEVIEGYKKN----------EETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIA  153 (207)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334555555555555554444221          12344455566666666666666666666666666666666


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH---HHHHHHHHHHHHHHHHH
Q 013334          368 NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA---AKLQELASKAEEIVEKF  426 (445)
Q Consensus       368 ~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e---~ei~~i~~~y~~l~~~~  426 (445)
                      .++.........          +.+.++.-+..+.++....+   .|..++...|..|.+.+
T Consensus       154 ~v~~~~~~e~~a----------Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~  205 (207)
T PF05010_consen  154 QVRSKHQAELLA----------LQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM  205 (207)
T ss_pred             HHHHHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            655554444322          33333333444444443333   45555666666665543

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=87.87  E-value=29  Score=34.03  Aligned_cols=83  Identities=12%  Similarity=0.154  Sum_probs=53.7

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334          176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS-------QTEFDLVQSVQQNADLRSKIVQSPEKLQ  248 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~-------~~~~~l~~l~qe~~~L~~~Iv~SPe~lk  248 (445)
                      .+.-|.++|.-|.++|..=+...+.|..+++.+....+....+.+       +++..+.+...|.-.|+.++-.....|+
T Consensus        64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk  143 (305)
T PF14915_consen   64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK  143 (305)
T ss_pred             hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence            556677788888888877777777788888888777777666544       3444455556666666666555555555


Q ss_pred             HHHHHHHHHH
Q 013334          249 RTLEEKKSIR  258 (445)
Q Consensus       249 ~~l~e~k~~~  258 (445)
                      ...+-++..+
T Consensus       144 d~ne~LsQqL  153 (305)
T PF14915_consen  144 DNNEILSQQL  153 (305)
T ss_pred             HHhHHHHHHH
Confidence            4444444444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.86  E-value=26  Score=39.04  Aligned_cols=39  Identities=18%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334          183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  221 (445)
Q Consensus       183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~  221 (445)
                      +...++.++..++.....|+.+++.+.+....+..++..
T Consensus       580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~  618 (717)
T PF10168_consen  580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR  618 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555666666666655555555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=87.78  E-value=34  Score=34.73  Aligned_cols=44  Identities=11%  Similarity=0.214  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013334          183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL  226 (445)
Q Consensus       183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l  226 (445)
                      +.+..++++..+++....-..++..+.++...+..++..+..+-
T Consensus       117 e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr  160 (499)
T COG4372         117 EREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR  160 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444433333344444444444444444333333

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=87.62  E-value=19  Score=37.16  Aligned_cols=7  Identities=29%  Similarity=0.548  Sum_probs=2.7

Q ss_pred             hHhhhhh
Q 013334          127 YKDTKMN  133 (445)
Q Consensus       127 Fre~~~~  133 (445)
                      |.++.+.
T Consensus       336 y~e~~~~  342 (493)
T KOG0804|consen  336 YYEQIMS  342 (493)
T ss_pred             HHHHHHH
Confidence            3444333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=87.53  E-value=4.2  Score=41.04  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=15.3

Q ss_pred             CCChhhh------CCCChhHHHHHHHHHHHHhcc
Q 013334           25 VITENDL------KNPNPDFVSDLYTRLLIFLDV   52 (445)
Q Consensus        25 ~~t~~dl------~~Pt~~~v~~ly~~~l~~~~~   52 (445)
                      +++..||      .+|. ..|..|+..++.+||.
T Consensus       100 ~l~k~di~Eiks~~~PP-~~V~~V~~aV~iLl~~  132 (344)
T PF12777_consen  100 SLDKSDISEIKSYANPP-EAVKLVMEAVCILLGP  132 (344)
T ss_dssp             CS-HHHHHHHHHSSS---HHHHHHHHHHHHHTT-
T ss_pred             hCCHHHHHHHHhhCCCc-HHHHHHHHHHhhHHhc
Confidence            3555555      3554 4577888887777764

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=87.35  E-value=12  Score=38.12  Aligned_cols=44  Identities=18%  Similarity=0.245  Sum_probs=36.2

Q ss_pred             CCCCHHHHHHHHhhcCC-CCCChhhhCCCChhHHHHHHHHHH-HHh
Q 013334            7 PRLSATEIVTILTETEI-AVITENDLKNPNPDFVSDLYTRLL-IFL   50 (445)
Q Consensus         7 P~l~~~EIv~~L~~~~i-~~~t~~dl~~Pt~~~v~~ly~~~l-~~~   50 (445)
                      |.-...-|...|+.+|+ ++|.+.-|..=..+.|..|.-.+. ..+
T Consensus        69 Pn~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL  114 (359)
T PF10498_consen   69 PNATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEAL  114 (359)
T ss_pred             HHHHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHH
Confidence            44456678888999998 489999999999999999988888 666

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=86.91  E-value=7.2  Score=43.52  Aligned_cols=40  Identities=20%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHH
Q 013334          384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV  423 (445)
Q Consensus       384 ~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~  423 (445)
                      ..++..+.+++...+..+.-+++-|.+.+.++..-+..|.
T Consensus       605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~ll  644 (722)
T PF05557_consen  605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLL  644 (722)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345556666667777777777777777766666655543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=86.61  E-value=60  Score=36.42  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334          200 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV  241 (445)
Q Consensus       200 ~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv  241 (445)
                      .+......+........++++.....+.+.++.+..|++++.
T Consensus       600 ~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~  641 (769)
T PF05911_consen  600 KLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE  641 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555666666666666666666666655

The function of this family is unknown.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.37  E-value=14  Score=34.43  Aligned_cols=22  Identities=9%  Similarity=0.323  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013334          333 KLIERQGKVEQLDELQQQLEKE  354 (445)
Q Consensus       333 kl~e~q~k~e~l~e~~~~~~~e  354 (445)
                      ++..++.++..++.++......
T Consensus        94 rlp~le~el~~l~~~l~~~~~~  115 (206)
T PRK10884         94 RVPDLENQVKTLTDKLNNIDNT  115 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Confidence            3344444444444444433333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=86.35  E-value=52  Score=35.46  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=15.5

Q ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHH
Q 013334          240 IVQSPEKLQRTLEEKKSIREEARDA  264 (445)
Q Consensus       240 Iv~SPe~lk~~l~e~k~~~~~l~~~  264 (445)
                      ++.-|++++..++++...+..+++.
T Consensus       119 ~~~e~~~lk~~lee~~~el~~~k~q  143 (629)
T KOG0963|consen  119 ASEENEELKEELEEVNNELADLKTQ  143 (629)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhh
Confidence            5666667777777766665554443

>PRK10869 recombination and repair protein; Provisional

Probab=86.31  E-value=53  Score=35.48  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=40.4

Q ss_pred             HHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhh---hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013334           89 KEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTK---MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAA  165 (445)
Q Consensus        89 ~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~---~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~  165 (445)
                      ..++...|.+ +-  .-|++|...  +.+|-.+.+...++..-   ...|..+..++..+.........+++-++-++++
T Consensus       122 ~~li~ihgQ~-~~--~~ll~~~~~--~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~E  196 (553)
T PRK10869        122 QLLIQIHGQH-AH--QLLLKPEHQ--KTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKE  196 (553)
T ss_pred             HhhhheeCcC-hH--HHhcCHHHH--HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4555666765 31  233455444  46777666543444433   2334445555555555555556666667766666


Q ss_pred             HHH
Q 013334          166 YNE  168 (445)
Q Consensus       166 ~~~  168 (445)
                      +..
T Consensus       197 i~~  199 (553)
T PRK10869        197 LNE  199 (553)
T ss_pred             HHh
Confidence            644

>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle

Probab=86.20  E-value=0.73  Score=40.44  Aligned_cols=39  Identities=18%  Similarity=0.376  Sum_probs=26.7

Q ss_pred             HHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHHHHhcc
Q 013334           14 IVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDV   52 (445)
Q Consensus        14 Iv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l~~~~~   52 (445)
                      +-..+..||+++|+-.||.+|+|.-+..+...++.|+-.
T Consensus        90 ~~~~~~~~gv~DF~l~Dl~~P~~~R~~~~LSalINF~~F  128 (146)
T PF03800_consen   90 LQKFLKDCGVPDFSLSDLLKPDPKRTRRILSALINFARF  128 (146)
T ss_dssp             HHHHHHHTT-----HHHHHS--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            344578899999999999999999999999999977644

It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=85.94  E-value=19  Score=30.80  Aligned_cols=41  Identities=22%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 013334          366 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE  406 (445)
Q Consensus       366 ~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~  406 (445)
                      ....++++...+++++.....++.+...|..|+.+|..+..
T Consensus        84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445566666667777666677777777777777776653

The region featured in this family is approximately 100 amino acids long.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=85.93  E-value=14  Score=28.64  Aligned_cols=65  Identities=25%  Similarity=0.374  Sum_probs=35.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334          143 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  221 (445)
Q Consensus       143 ~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~  221 (445)
                      +.|.++..+.-+.|.-|+.++++++              .+|..|..+...+......|..+...++.+.....++|..
T Consensus         7 eqLE~KIqqAvdtI~LLqmEieELK--------------ekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422          7 EKLEAKVQQAIDTITLLQMEIEELK--------------EKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445566666766776665553              4445555555555555555555555555555555544443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.80  E-value=40  Score=33.60  Aligned_cols=62  Identities=13%  Similarity=0.161  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334          366 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ  427 (445)
Q Consensus       366 ~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~  427 (445)
                      +.+++.++......++........+.+.+.+.+...+.-+.=...|+..+...|..|++..+
T Consensus       227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g  288 (312)
T smart00787      227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG  288 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            33344444444444444444444445555555555555555566889999999888887654

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=85.69  E-value=12  Score=28.85  Aligned_cols=57  Identities=19%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334          183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  239 (445)
Q Consensus       183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~  239 (445)
                      .+..|..+-..|.+.+..+...+..++....++...+..+...+..+..+++.|+..
T Consensus        13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~   69 (74)
T PF12329_consen   13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER   69 (74)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555555555555555555555555555555555555555555543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=85.64  E-value=12  Score=28.50  Aligned_cols=60  Identities=13%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334          180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  239 (445)
Q Consensus       180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~  239 (445)
                      |++.+..|...|..+.++-...-.....+..+.+.....+..+-..+..+..+++.|+..
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666665566666666777777777777777777777776666654

>PRK11281 hypothetical protein; Provisional

Probab=85.45  E-value=83  Score=36.96  Aligned_cols=59  Identities=10%  Similarity=0.157  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcC
Q 013334          185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS  243 (445)
Q Consensus       185 ~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~S  243 (445)
                      ..|++.|..+.....+.......+..+.....+..+.+...+.+..+....++.++..+
T Consensus       124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~  182 (1113)
T PRK11281        124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGG  182 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34666666666666666667777777777777777777777777777777777766553

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=85.41  E-value=35  Score=32.62  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 013334          188 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE  253 (445)
Q Consensus       188 ~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e  253 (445)
                      ...+..|+..+..|.......+.+-+-+.-++...+.+...+...|..|+++...|.-.+.+.|-+
T Consensus       107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD  172 (330)
T KOG2991|consen  107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD  172 (330)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC
Confidence            344455555555566666666666667778888888888888889999988877777666666533

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=85.28  E-value=16  Score=28.45  Aligned_cols=17  Identities=29%  Similarity=0.395  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013334          145 LDEQRSELEDKISQLNA  161 (445)
Q Consensus       145 l~~~~~~l~~~i~~l~~  161 (445)
                      |.-+..+++++...|..
T Consensus        23 LqmEieELKekn~~L~~   39 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQ   39 (79)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444443333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=85.21  E-value=96  Score=37.44  Aligned_cols=81  Identities=10%  Similarity=0.099  Sum_probs=42.1

Q ss_pred             HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 013334          317 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDA  396 (445)
Q Consensus       317 k~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~  396 (445)
                      ..++..-.......+..+...+.++..+..++..........++++..++..+..++....+++.............+..
T Consensus       881 ~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~  960 (1353)
T TIGR02680       881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGR  960 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444333334445555555556666665555555555544456666666666655555555555544444444433333


Q ss_pred             H
Q 013334          397 I  397 (445)
Q Consensus       397 l  397 (445)
                      .
T Consensus       961 a  961 (1353)
T TIGR02680       961 A  961 (1353)
T ss_pred             H
Confidence            3

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PLN02939 transferase, transferring glycosyl groups

Probab=85.17  E-value=78  Score=36.41  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013334          189 QTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ  228 (445)
Q Consensus       189 ~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~  228 (445)
                      ..+.-||+-...--.+++.+-.++..+..+|.-++..+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (977)
T PLN02939        142 KNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE  181 (977)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence            3333344444333444444455555555555444444443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=85.00  E-value=23  Score=30.09  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHhcHHHHHH
Q 013334          388 EAVVTEVDAITSKTKFVKESGAAKLQE  414 (445)
Q Consensus       388 e~~~~~v~~le~~~~~~~~~~e~ei~~  414 (445)
                      .....++..++.++.++|.=|-..|+.
T Consensus        92 GEK~E~veEL~~Dv~DlK~myr~Qi~~  118 (120)
T PF12325_consen   92 GEKSEEVEELRADVQDLKEMYREQIDQ  118 (120)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555666667777777777666654

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=84.94  E-value=31  Score=31.68  Aligned_cols=59  Identities=27%  Similarity=0.427  Sum_probs=32.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHH
Q 013334          137 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK  196 (445)
Q Consensus       137 ~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~  196 (445)
                      .....++.+..+...+..++..+...++.....+... .....+.++.++|+.++..|..
T Consensus        66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~  124 (188)
T PF03962_consen   66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKK  124 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666777777777777777765544333 1223333444444444444443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.68  E-value=15  Score=27.74  Aligned_cols=63  Identities=24%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334          143 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  219 (445)
Q Consensus       143 ~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l  219 (445)
                      +.+.+..++.-+.|.-|+.++++++.+              |..|.++..++....++|..+-+.+|.+......+|
T Consensus         7 ekLE~KiqqAvdTI~LLQmEieELKEk--------------nn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl   69 (79)
T COG3074           7 EKLEAKVQQAIDTITLLQMEIEELKEK--------------NNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL   69 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444566666777777776666443              334444444444444444444444444444444433

>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin

Probab=84.68  E-value=18  Score=33.42  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHH
Q 013334          296 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKL  334 (445)
Q Consensus       296 l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl  334 (445)
                      .+.+.---..+.+++..++.|..+|.+...++++|+.+.
T Consensus       128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs  166 (205)
T PF12240_consen  128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRS  166 (205)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            555655566777888888899999998888888887653

Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=84.68  E-value=35  Score=31.92  Aligned_cols=17  Identities=29%  Similarity=0.235  Sum_probs=11.8

Q ss_pred             chHHHHHHHHHHHHhhH
Q 013334          112 TRTEYFLSAILNFCLYK  128 (445)
Q Consensus       112 ~R~~~iLSalINF~rFr  128 (445)
                      +|+.+++.|.+|-+-=+
T Consensus         4 ~Rl~~~~~a~~~~~ld~   20 (221)
T PF04012_consen    4 KRLKTLVKANINELLDK   20 (221)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            57777788877766543

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.52  E-value=27  Score=30.58  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334          384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ  427 (445)
Q Consensus       384 ~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~  427 (445)
                      .........++..+...+...+..++.|++.-..+|++|..++.
T Consensus       107 ~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~  150 (151)
T PF11559_consen  107 EAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN  150 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444556677777888889999999999999999999988753

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=84.22  E-value=34  Score=31.41  Aligned_cols=29  Identities=14%  Similarity=0.165  Sum_probs=18.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334          213 GALDEKFSQTEFDLVQSVQQNADLRSKIV  241 (445)
Q Consensus       213 ~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv  241 (445)
                      .+|...|++++..=.++..+..+|+..|.
T Consensus         4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve   32 (193)
T PF14662_consen    4 SDLLSCVEDLQLNNQKLADENAKLQRSVE   32 (193)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45566666666666667777777765544

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.21  E-value=39  Score=32.12  Aligned_cols=50  Identities=14%  Similarity=0.139  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334          191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  240 (445)
Q Consensus       191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I  240 (445)
                      |.++.+..+.|..+....-++...+..+|+.++..+..++.+..+....|
T Consensus        34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i   83 (230)
T PF10146_consen   34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI   83 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444455555555555555555544333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=83.31  E-value=27  Score=29.57  Aligned_cols=83  Identities=18%  Similarity=0.339  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hccchhHhHHHHHHHHHHHHHHHHHHH
Q 013334          134 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE---------------RELPLVQEVDAKVKELRQTIQDLNKHQ  198 (445)
Q Consensus       134 ~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~---------------~~~~~~~el~~e~~~L~~~L~~l~~~q  198 (445)
                      .|..+.+++..+..+...++..+......+.++..-.+               .....+.+|+.+..-|+-++..|.++.
T Consensus        14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe   93 (119)
T COG1382          14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQE   93 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555444422000               011244566666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013334          199 VSLRTTLNKLKEKTGALD  216 (445)
Q Consensus       199 ~~l~~~~~~lk~e~~~l~  216 (445)
                      ..+..+++++++....+.
T Consensus        94 ~~l~e~l~eLq~~i~~~l  111 (119)
T COG1382          94 EKLQERLEELQSEIQKAL  111 (119)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            666666666666555443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=83.21  E-value=1e+02  Score=36.10  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 013334          329 SLEAKLIERQGKVEQLDELQQQL  351 (445)
Q Consensus       329 ~L~~kl~e~q~k~e~l~e~~~~~  351 (445)
                      .+..++..++..++++...++..
T Consensus       671 ~~e~~lk~~q~~~eq~~~E~~~~  693 (1317)
T KOG0612|consen  671 KLERKLKMLQNELEQENAEHHRL  693 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555666666655555443

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=81.91  E-value=46  Score=31.31  Aligned_cols=40  Identities=20%  Similarity=0.111  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          198 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       198 q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      |.....++..+..+-.++..+.-+++.....+++++..|+
T Consensus       170 Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~  209 (221)
T PF05700_consen  170 QEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK  209 (221)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555555555555555554

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=81.30  E-value=64  Score=32.58  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=35.6

Q ss_pred             ccCCCcchHHHHHHHHHHHH-hhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          106 LIRPDATRTEYFLSAILNFC-LYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV  169 (445)
Q Consensus       106 L~~P~~~R~~~iLSalINF~-rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~  169 (445)
                      ...++|.....+..++++++ .|-+. . ......+....+.++...++.++...+..+.+++.+
T Consensus       137 ~~~~dP~~A~~ian~l~~~~~~~i~~-~-~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~  199 (362)
T TIGR01010       137 VTAFDAEEAQKINQRLLKEGERLINR-L-NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIK  199 (362)
T ss_pred             EEecCHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34688888888888888742 11111 1 011122344455566666677777666666666553

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=81.11  E-value=21  Score=26.83  Aligned_cols=46  Identities=11%  Similarity=0.204  Sum_probs=29.9

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013334          177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  222 (445)
Q Consensus       177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~  222 (445)
                      +++|..+|..|.+++..+......|....+....+...|..++-.+
T Consensus        16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l   61 (65)
T TIGR02449        16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4566677777777777776666666666666666666665555443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=81.04  E-value=63  Score=32.26  Aligned_cols=78  Identities=15%  Similarity=0.200  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh-------HHHHHHh---cHHHHHHHHHHHHHHHHHHH
Q 013334          358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK-------TKFVKES---GAAKLQELASKAEEIVEKFQ  427 (445)
Q Consensus       358 ~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~-------~~~~~~~---~e~ei~~i~~~y~~l~~~~~  427 (445)
                      ++.+++..+..+-.+.++...+++..+.....++.++..+=+-       ++.+-..   ....+..+..+-..+...+.
T Consensus       141 q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~  220 (319)
T PF09789_consen  141 QIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTIN  220 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445555555555555555444444444444332111       2222211   23567788888899999999


Q ss_pred             HhHhhhhh
Q 013334          428 QYTNSIGT  435 (445)
Q Consensus       428 ~Y~~~~~~  435 (445)
                      .|-..+..
T Consensus       221 KYK~~le~  228 (319)
T PF09789_consen  221 KYKSALER  228 (319)
T ss_pred             HHHHHHHh
Confidence            99887773

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=80.95  E-value=43  Score=32.49  Aligned_cols=54  Identities=13%  Similarity=0.229  Sum_probs=27.1

Q ss_pred             HhhhHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH
Q 013334          355 RNLKSEDATRAFENVKLEM-ESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA  409 (445)
Q Consensus       355 ~~~~~eel~~~~~~lkee~-e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e  409 (445)
                      |...|.+++.++...++.| ++.=+..|+.-+ .+...++|+.|..-++.++.+..
T Consensus        87 RetEI~eLksQL~RMrEDWIEEECHRVEAQLA-LKEARkEIkQLkQvieTmrssL~  141 (305)
T PF15290_consen   87 RETEIDELKSQLARMREDWIEEECHRVEAQLA-LKEARKEIKQLKQVIETMRSSLA  141 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhc
Confidence            4455555666666656555 333444444433 33344555555555555554443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=80.65  E-value=77  Score=33.04  Aligned_cols=63  Identities=19%  Similarity=0.213  Sum_probs=35.9

Q ss_pred             chhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334          175 PLVQEVDAKVKELRQTIQDLNK---HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  237 (445)
Q Consensus       175 ~~~~el~~e~~~L~~~L~~l~~---~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~  237 (445)
                      ..++.|+-.|--|+.++.+|.-   .|..+..-++++|....+|...-...-.+...+..-..+|.
T Consensus       331 ~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLq  396 (527)
T PF15066_consen  331 NRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQ  396 (527)
T ss_pred             HHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHH
Confidence            3455666666666666666643   34456666777777777776655554444444444444443

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.65  E-value=22  Score=26.85  Aligned_cols=52  Identities=21%  Similarity=0.318  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 013334          201 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLE  252 (445)
Q Consensus       201 l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~  252 (445)
                      |.-+++++|++.+.+..+..++......+..+.+.|+..-..=.++|.+.|-
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG   74 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG   74 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445666677776666666666666666666666666555544555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	3e-31
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-04

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D* Length = 250

 Score =  119 bits (299), Expect = 3e-31
 Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 9/215 (4%)

Query: 1   MSKFDYPRLSATEIVTILTETEIAV-----ITENDL-KNPNPDFVSDLYTRLLIFLDVLH 54
           M    +PR +  EIV  +    +       +T+NDL  NP P+ +  +Y R L  +  + 
Sbjct: 6   METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIR 65

Query: 55  EDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRT 114
            +    +       +  P L    +    L + +   +       +F   D++ P A RT
Sbjct: 66  LEHFYMM--PVNSGVMYPHLMEGFLPFSNLVTHLDSFLPICRVN-DFETADILCPKAKRT 122

Query: 115 EYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVREREL 174
             FLS I+NF  +++                 ++  +L     +   ++    +  + + 
Sbjct: 123 SRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182

Query: 175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLK 209
            +       V +L   +  +          +  + 
Sbjct: 183 TVTIPSAVYVAQLYHQVSKIEWEYECEPGMVKGIH 217

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 72.9 bits (179), Expect = 7e-14
 Identities = 51/280 (18%), Positives = 108/280 (38%), Gaps = 22/280 (7%)

Query: 128  KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 187
            K+     L+   E     +E R  L  K  +L   +       E E    Q++ A+ K++
Sbjct: 894  KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 188  RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 247
            +Q + DL +          KL+ +    D K  + E D++    QN  L  +     E++
Sbjct: 954  QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

Query: 248  QRTLEEKKSIREEARDAEKL---AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVN 304
                       E+A++  KL         E    L+  +K+ +++ K   +++     ++
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073

Query: 305  SA---------------KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQ 349
                                E++ ++  ARL D+     +   K+ E +     + +LQ+
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE---SHISDLQE 1130

Query: 350  QLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEA 389
             LE E+  +++ A +   ++  E+E+ + +LE        
Sbjct: 1131 DLESEKAARNK-AEKQKRDLSEELEALKTELEDTLDTTAT 1169

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 25/168 (14%), Positives = 70/168 (41%), Gaps = 3/168 (1%)

Query: 266  KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVV 325
            +  MQ+  E+    +  Q+  +   K+  Q    L +      +++  ++      +   
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCE--EKNLLQEKLQAETELYAEAEE 913

Query: 326  LDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK 385
            +   L AK  E +  + ++ E + + E+ER+ + +   +  +   L++E + ++ EA ++
Sbjct: 914  MRVRLAAKKQELEEILHEM-EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 386  KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 433
            K++      D    K +        +  +L  + + + E+    T ++
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 1e-11
 Identities = 64/383 (16%), Positives = 114/383 (29%), Gaps = 116/383 (30%)

Query: 54  HED-DQGQLDFA---ALEQLENP---DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDL 106
           H D + G+  +     L   E+    +   + VQ      M K +++            +
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----DMPKSILSKEEI------DHI 54

Query: 107 IR-PDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLD----EQRSELEDKISQLNA 161
           I   DA      L     F      +  +++   E++ R++        + E +   +  
Sbjct: 55  IMSKDAVSGTLRL-----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 162 EIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS-------LRTTLNKLKE---- 210
            +  Y E R+R              L    Q   K+ VS       LR  L +L+     
Sbjct: 110 RM--YIEQRDR--------------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 211 ---------KT-----GALDEKFSQTEFD-----LVQSVQQNADLRSKIVQSPEKLQRTL 251
                    KT       L  K  Q + D     L      + +   +++Q   KL   +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQI 209

Query: 252 EEKKSIREEARDAEKLAMQSFQEKTTTL---EVYQKTLKKMSKQSAQMQAILEQVNSAKS 308
           +   + R +     KL + S Q +   L   + Y+  L            +L  V +AK+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----------LVLLNVQNAKA 258

Query: 309 IEK-DYKSLKARLNDDVVL----DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDAT 363
               +   L  +     +L     K +   L         LD     L  +         
Sbjct: 259 WNAFN---LSCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS----- 305

Query: 364 RAFENVKLEMESKRQDL--EARQ 384
                  L+   + QDL  E   
Sbjct: 306 -LLLKY-LDC--RPQDLPREVLT 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 9e-10
 Identities = 76/467 (16%), Positives = 147/467 (31%), Gaps = 139/467 (29%)

Query: 5   DYPRLS---ATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQL 61
           +Y  L     TE       T + +   + L N N  F     +RL  +L  L +      
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQ------ 142

Query: 62  DFAALEQLENPDLHVRSVQIMKLYSMV---KEVVT-------TVNCPMNF-----TLKDL 106
              AL +L       R  + + +  ++   K  V         V C M+F      LK+ 
Sbjct: 143 ---ALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 107 IRPDA-----------------TRTEYFLSAILNFCLYKDTKMNLL--RPIAEDLTRLDE 147
             P+                  +R+++  +  L     +     LL  +P    L  L  
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 148 -QRSELED------KI----------SQLNAEIAAYNEVRERELPLVQE---------VD 181
            Q ++  +      KI            L+A    +  +    + L  +         +D
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN-------A 234
            + ++L + +   N  ++S+      +++     D  +     D + ++ ++       A
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPA 369

Query: 235 DLR------------SKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEK-----TT 277
           + R            + I   P  L   +       +      KL   S  EK     T 
Sbjct: 370 EYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 278 TL-EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKS---------------LKARLN 321
           ++  +Y +   K+  + A  ++I++  N  K+ + D                  LK   +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 322 DD-------VVLDKS-LEAKLIE----RQGKVEQLDELQQQLEKERN 356
            +       V LD   LE K+             L+ L QQL+  + 
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKP 532

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 51/276 (18%), Positives = 92/276 (33%), Gaps = 79/276 (28%)

Query: 26  ITENDLKNPNPDFVSDLYTRLLIF----------LDVLHEDDQGQLDFAALEQLEN---- 71
           I E+ L    P     ++ RL +F          L ++  D         + +L      
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 72  -----------PDLHVR-SVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRP--DATRTEYF 117
                      P +++   V++   Y++ + +V   N P  F   DLI P  D    +YF
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QYF 473

Query: 118 LSAI---LNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVREREL 174
            S I   L    + + +M L R +  D  R       LE KI             R    
Sbjct: 474 YSHIGHHLKNIEHPE-RMTLFRMVFLDF-RF------LEQKI-------------RHDST 512

Query: 175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 234
                       +  T+Q L  ++  +    N         D K+ +    ++  + +  
Sbjct: 513 AW-----NASGSILNTLQQLKFYKPYI--CDN---------DPKYERLVNAILDFLPKIE 556

Query: 235 DLRSKIVQSPEK--LQRTL-EEKKSIREEA-RDAEK 266
                ++ S     L+  L  E ++I EEA +  ++
Sbjct: 557 ---ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 68/276 (24%)

Query: 193 DLNKHQVSLRTTLNKLKEK-TGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 251
           +  +HQ   +  L+  ++      D K  Q   D+ +S+    ++   I+ S + +  TL
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEID-HIIMSKDAVSGTL 65

Query: 252 EEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ--MQAILEQVNSAKSI 309
                              +   K    E+ QK ++++ + + +  M  I  +      +
Sbjct: 66  ---------------RLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 310 EKDYKSLKARL-NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---------KS 359
            + Y   + RL ND+ V  K      + R     +L +   +L   +N+         K+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 360 ---EDATRAFENVKLEME------------SKRQDLEARQK---KVEAVVTEVDAITSKT 401
               D   +++ V+ +M+            S    LE  QK   +++   T     +S  
Sbjct: 165 WVALDVCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 402 KFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 437
           K    S  A+L+ L      +  K   Y N    LL
Sbjct: 224 KLRIHSIQAELRRL------LKSK--PYENC---LL 248

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 36/212 (16%), Positives = 84/212 (39%), Gaps = 33/212 (15%)

Query: 144  RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 203
            R    + EL+    +L  E  +    ++        ++ K+ +L++ I + NK   SL  
Sbjct: 898  RRMMAKRELK----KLKIEARSVERYKKLH----IGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 204  TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 263
             +N L+       EK       L  S ++  +  ++++   E++ +  +E    + E + 
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 264  AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD 323
             E+                     K   ++ Q+ + L++ N    ++ + + L  R++D 
Sbjct: 1010 IEEW------------------ADKYKHETEQLVSELKEQN--TLLKTEKEELNRRIHD- 1048

Query: 324  VVLDKSLEAKLIERQGKVEQLDELQQQLEKER 355
                K +   + ++   VE+  +L+  L  ER
Sbjct: 1049 --QAKEITETMEKKL--VEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 41/243 (16%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 151  ELEDKISQLNAEIAAYNEVRERELPLVQE---VDAKVKELRQTIQDLNKHQVSLRTTLNK 207
             L+  +            +RE +  ++Q+            +T++ +   Q   R  + K
Sbjct: 844  ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903

Query: 208  LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKL 267
             + K   ++ +       + +  + +  L +KI+Q   K+    +E KS+ E+  + E  
Sbjct: 904  RELKKLKIEAR------SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE-- 955

Query: 268  AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLD 327
                    +T  E  +  ++++     + +    +V    S++++   L+  L+      
Sbjct: 956  -----ITYSTETEKLRSDVERLRMSEEEAKNATNRV---LSLQEEIAKLRKELHQTQTEK 1007

Query: 328  KSLEAKLIERQGKVEQL-DELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK 386
            K++E    + + + EQL  EL++Q    +  K E   R  +  K   E+  + L    K+
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067

Query: 387  VEA 389
            +E 
Sbjct: 1068 LEL 1070

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 34/242 (14%), Positives = 85/242 (35%), Gaps = 24/242 (9%)

Query: 144  RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 203
             L E +S +  K  +       Y+   +  + L       + +         K       
Sbjct: 861  MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL------KKLKIEAR 914

Query: 204  TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 263
            ++ + K+    L+ K  Q +  + +  ++   L  K+           E+ +S  E  R 
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974

Query: 264  AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD 323
            +E+ A ++   +  +L+      ++++K   ++     +    K+IE+     K      
Sbjct: 975  SEEEA-KNATNRVLSLQ------EEIAKLRKELHQTQTEK---KTIEEWADKYKHETEQ- 1023

Query: 324  VVLDKSLEAKLIERQGKVEQ-LDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA 382
                  L ++L E+   ++   +EL +++  +    +E   +       ++E    D   
Sbjct: 1024 ------LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077

Query: 383  RQ 384
            R 
Sbjct: 1078 RY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 33/254 (12%), Positives = 88/254 (34%), Gaps = 21/254 (8%)

Query: 176  LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 235
            +V++    +++    +Q L +  +        L+E    + +K  +    L +       
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW--LARVHYHRTL 887

Query: 236  LRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQ------EKTTTLEVYQKTLKKM 289
                 +Q   +      E K ++ EAR  E+             +    ++   K  K +
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 290  SKQSAQMQAILEQVNSA-KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQ 348
             ++   ++          +S  +  +  +    +      SL+ ++ + + ++ Q    +
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 349  QQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDA-ITSKTKFVKES 407
            + +E+             +  K E E    +L+ +   ++    E++  I  + K + E+
Sbjct: 1008 KTIEEWA-----------DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056

Query: 408  GAAKLQELASKAEE 421
               KL E   + E 
Sbjct: 1057 MEKKLVEETKQLEL 1070

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 8/139 (5%)

Query: 140  EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 199
            ++   L E+ + LE   S    ++ +  E         +    +V  L++ I  L K   
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 200  SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ--------NADLRSKIVQSPEKLQRTL 251
              +T    ++E       +  Q   +L +            N  +  +  +  E +++ L
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 252  EEKKSIREEARDAEKLAMQ 270
             E+    E   + E+L  Q
Sbjct: 1062 VEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 18/129 (13%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 128  KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 187
              T+   LR   E L   +E+     +++  L  EIA   +   +     + ++    + 
Sbjct: 958  YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017

Query: 188  RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 247
            +   + L      L+     LK +   L+ +      ++ +++++     +K      +L
Sbjct: 1018 KHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK------QL 1068

Query: 248  QRTLEEKKS 256
            +  L +++ 
Sbjct: 1069 ELDLNDERL 1077

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 18/215 (8%)

Query: 166  YNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 225
             N V  R    +  ++  V  + +    L + Q+ L   L KL++    + +        
Sbjct: 1889 QNYVTPRHY--LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQK 1946

Query: 226  LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKT 285
              +   +N     K+ Q  +  Q    ++K  RE     +    +   +K       +K 
Sbjct: 1947 NRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006

Query: 286  LKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD 345
                  +              + +E     LK + ++ V    +LE  +   + +   L 
Sbjct: 2007 EPTGPLREE-----------VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055

Query: 346  ELQQQLEKERNL---KSEDATRAFENVKLEMESKR 377
               +Q++ E +    K + +    +N  L  E  R
Sbjct: 2056 RETEQIKTESSKVKNKVDRSIALLDN--LNSERGR 2088

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 25/181 (13%), Positives = 61/181 (33%), Gaps = 4/181 (2%)

Query: 101 FTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLN 160
             L+ +     T+          F        N +      L + +++ +E      +  
Sbjct: 816 SELEAIYNSLQTKLRLI--KREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQ 873

Query: 161 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220
            +IA   +   R L    E  A  K +     +      +++  L  L+   G       
Sbjct: 874 KKIAVLLQKYNRIL-KKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 932

Query: 221 QTEFDLVQSVQQNADLR-SKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTL 279
           Q+  DL+  + Q  +L  + + +  E+      ++ +  + + +  K  + +  E+   +
Sbjct: 933 QSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKI 992

Query: 280 E 280
           E
Sbjct: 993 E 993

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	100.0
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.51
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.88
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.16
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.91
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.82
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.38
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.99
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.56
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.17
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.82
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.13
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	93.8
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	93.75
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	92.98
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.8
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	92.6
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.37
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	91.69
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	91.06
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	90.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.61
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	90.2
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	90.14
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.64
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	89.38
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	88.82
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	88.79
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.41
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	88.19
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	87.42
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	87.09
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	87.03
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	86.54
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	86.19
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	84.55
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	84.04
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	83.22
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	82.69

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=100.00  E-value=3.9e-41  Score=319.54  Aligned_cols=166  Identities=20%  Similarity=0.333  Sum_probs=142.3

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCCC-----CCChhhh-CCCChhHHHHHHHHHH-HHhcccCcccchhcchHhhhcCCCch
Q 013334            1 MSKFDYPRLSATEIVTILTETEIA-----VITENDL-KNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPD   73 (445)
Q Consensus         1 ms~~~FP~l~~~EIv~~L~~~~i~-----~~t~~dl-~~Pt~~~v~~ly~~~l-~~~~~~~~e~~~~~~~~~~~~l~~pe   73 (445)
                      ||+|+||+|+++|||+||++|||+     +||++|| .||||++|++||++|| .+||++.++... +  +....++||+
T Consensus         6 ms~~~FP~L~~~eIv~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~~g~~~e~~~~-~--~~~~~~~~pe   82 (250)
T 2ve7_C            6 METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYM-M--PVNSGVMYPH   82 (250)
T ss_dssp             ---CCCCCCCHHHHHHHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHHHCCCSGGGSC-C--CSSCCCSCGG
T ss_pred             cccCCCCCCCHHHHHHHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHhc-c--chhhcccChh
Confidence            899999999999999999999995     5999999 8999999999999999 899998765432 2  2334678999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHH
Q 013334           74 LHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELE  153 (445)
Q Consensus        74 ~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~  153 (445)
                      +|.+|+++++||++|++||..|||+ |||++||++|+|+||+++|||||||++||++++..+++++.+++.+.++.+++.
T Consensus        83 l~~~si~~l~~~r~l~~~l~~~gv~-DFtl~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~  161 (250)
T 2ve7_C           83 LMEGFLPFSNLVTHLDSFLPICRVN-DFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLN  161 (250)
T ss_dssp             GGTTTHHHHHHHHHHHHHHHHTTCC-CCCHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCC-CCcHhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999988888888887


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013334          154 DKISQLNAEIAAYNEVR  170 (445)
Q Consensus       154 ~~i~~l~~~~~~~~~~~  170 (445)
                      +++..++.+|++++..+
T Consensus       162 ~En~~le~~Ie~Lk~e~  178 (250)
T 2ve7_C          162 AAHQEALMKLERLEKEV  178 (250)
T ss_dssp             HHHHHHHHSCC------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77776666666554443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.51  E-value=0.00072  Score=63.12  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhh
Q 013334          410 AKLQELASKAEEIVEKFQQYTNSI  433 (445)
Q Consensus       410 ~ei~~i~~~y~~l~~~~~~Y~~~~  433 (445)
                      .++..+...+..+...++.+.+.|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~L  281 (284)
T 1c1g_A          258 DELYAQKLKYKAISEELDHALNDM  281 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555666655555554444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.05  E-value=1.2e-05  Score=92.00  Aligned_cols=10  Identities=0%  Similarity=0.059  Sum_probs=6.0

Q ss_pred             HHHHHHHcCC
Q 013334           88 VKEVVTTVNC   97 (445)
Q Consensus        88 ~~~~l~~~gv   97 (445)
                      |..++..+|+
T Consensus       752 ~~~lL~~l~l  761 (1184)
T 1i84_S          752 CILMIKALEL  761 (1184)
T ss_dssp             HHHHHHTTTC
T ss_pred             HHHHHHHcCC
Confidence            5566666665

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.88  E-value=3.8e-05  Score=87.93  Aligned_cols=8  Identities=13%  Similarity=0.605  Sum_probs=3.5

Q ss_pred             HHHHHHhh
Q 013334           13 EIVTILTE   20 (445)
Q Consensus        13 EIv~~L~~   20 (445)
                      +++.+|..
T Consensus       607 ~~~~ll~~  614 (1184)
T 1i84_S          607 NVTSLLNQ  614 (1184)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            44444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.16  E-value=0.11  Score=46.15  Aligned_cols=88  Identities=22%  Similarity=0.265  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHH
Q 013334          150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK----FSQTEFD  225 (445)
Q Consensus       150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~----l~~~~~~  225 (445)
                      ..+..++.+++.+++++..   .......+|++++..++..+..|...-..|..+++.+|.+.......    ++.+..+
T Consensus        20 ~~~~q~~~~le~El~EFqe---sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~e   96 (189)
T 2v71_A           20 MKYKQSFQEARDELVEFQE---GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD   96 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555532   12223445566666666666666666666666666666555555444    4444444


Q ss_pred             HHHHHHHHHHHHhhh
Q 013334          226 LVQSVQQNADLRSKI  240 (445)
Q Consensus       226 l~~l~qe~~~L~~~I  240 (445)
                      +..+...+..|..+|
T Consensus        97 l~~l~~~~~~l~~~i  111 (189)
T 2v71_A           97 LSQTRAIKEQLHKYV  111 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555554444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.91  E-value=0.21  Score=46.91  Aligned_cols=60  Identities=15%  Similarity=0.052  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 013334          361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  426 (445)
Q Consensus       361 el~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~  426 (445)
                      ++...+..++.++.....+++..   +..+.+++..+..+...+......   .+...|.+|....
T Consensus       129 ~~~~~l~~~~~~l~~~~~~~~~~---~~e~~~e~~~l~~~r~~l~~~i~~---~lL~~Yerir~~~  188 (256)
T 3na7_A          129 DLKKEMLELEKLALELESLVENE---VKNIKETQQIIFKKKEDLVEKTEP---KIYSFYERIRRWA  188 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhC
Confidence            33344444444444443333332   223344455555555555555543   5677888888754

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.82  E-value=0.16  Score=47.61  Aligned_cols=46  Identities=13%  Similarity=0.088  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 013334          332 AKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKR  377 (445)
Q Consensus       332 ~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~  377 (445)
                      ..+..++.++..++..+.....+.+..+.++..++..+..+.....
T Consensus       125 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~  170 (256)
T 3na7_A          125 EKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLV  170 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555566666666666666555544444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.38  E-value=1.7  Score=54.25  Aligned_cols=58  Identities=14%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             hHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHH
Q 013334          135 LRPIAEDLTRLDE-QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK  196 (445)
Q Consensus       135 ~~~~~~e~~~l~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~  196 (445)
                      |-+++.-|..+.. ++.++.....++...++.+....    ..|.++..+..+++.+|.+-++
T Consensus      1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~----~~V~~l~~~L~~~~~~L~~k~~ 1955 (3245)
T 3vkg_A         1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTE----AQVKDLQVSLAQKNRELDVKNE 1955 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666665543 45556666666666666554432    2455555555555555544433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.99  E-value=0.23  Score=39.72  Aligned_cols=91  Identities=14%  Similarity=0.184  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013334          150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS  229 (445)
Q Consensus       150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l  229 (445)
                      ..++.++..|+.+......+.+.....+.+.+.++..+..++..|++.-..+..+++.+..........++..+......
T Consensus         5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a   84 (101)
T 3u1c_A            5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA   84 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555554444445566667777888888888888877788888888888888888888888888888


Q ss_pred             HHHHHHHHhhh
Q 013334          230 VQQNADLRSKI  240 (445)
Q Consensus       230 ~qe~~~L~~~I  240 (445)
                      +.++..|..+|
T Consensus        85 E~ev~~L~Rri   95 (101)
T 3u1c_A           85 ESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887665

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.56  E-value=0.42  Score=38.12  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013334          151 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV  230 (445)
Q Consensus       151 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~  230 (445)
                      .++.++..|+.+......+.+.....+.+.+.....+..++..|++.-..+..+++.+.........+++..+......+
T Consensus         6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE   85 (101)
T 3u59_A            6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555544444444444445556667777777888888887778888888888888888888888888888888


Q ss_pred             HHHHHHHhhh
Q 013334          231 QQNADLRSKI  240 (445)
Q Consensus       231 qe~~~L~~~I  240 (445)
                      .++..|..+|
T Consensus        86 ~evasLnRri   95 (101)
T 3u59_A           86 AEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888765

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.17  E-value=7.1  Score=48.84  Aligned_cols=16  Identities=0%  Similarity=0.102  Sum_probs=6.6

Q ss_pred             hcHHHHHHHHHHHHHH
Q 013334          407 SGAAKLQELASKAEEI  422 (445)
Q Consensus       407 ~~e~ei~~i~~~y~~l  422 (445)
                      .-...+..+...+..|
T Consensus      2088 RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2088 RWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhc
Confidence            3333444444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.82  E-value=0.77  Score=51.82  Aligned_cols=50  Identities=16%  Similarity=0.080  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334          209 KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR  258 (445)
Q Consensus       209 k~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~  258 (445)
                      +..+..|..++.++...+...+.+...|..++..-.+.+...+.+++..+
T Consensus       920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l  969 (1080)
T 2dfs_A          920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV  969 (1080)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33344555555555555555455555555444333344444444443333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.13  E-value=2.4  Score=36.76  Aligned_cols=19  Identities=26%  Similarity=0.333  Sum_probs=7.3

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 013334          144 RLDEQRSELEDKISQLNAE  162 (445)
Q Consensus       144 ~l~~~~~~l~~~i~~l~~~  162 (445)
                      .+...+..++..+..|+..
T Consensus        59 ~L~~~k~~Leke~~~LQa~   77 (168)
T 3o0z_A           59 ILENSKSQTDKDYYQLQAI   77 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333344344433333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=93.80  E-value=2.6  Score=42.81  Aligned_cols=63  Identities=10%  Similarity=0.023  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334          295 QMQAILEQVNSAK-SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL  357 (445)
Q Consensus       295 ~l~~~~e~~~~~k-~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~  357 (445)
                      +..+.....+.+- ++++.+..|+.+++.+-..++.|+..|+++..+|++|+-....+......
T Consensus       100 q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg  163 (562)
T 3ghg_A          100 SANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG  163 (562)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3333333344444 57777888888888777777889999999999999998888876666554

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*

Probab=93.75  E-value=1.6  Score=42.15  Aligned_cols=40  Identities=25%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             HHHHHHHhhcCCC-CCChhhhCCCChhHHHHHHHHHHHHhc
Q 013334           12 TEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLD   51 (445)
Q Consensus        12 ~EIv~~L~~~~i~-~~t~~dl~~Pt~~~v~~ly~~~l~~~~   51 (445)
                      .+|..+|...|++ .+|...|..||.--...||.+++.+++
T Consensus        19 ~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~id   59 (315)
T 2ve7_A           19 RQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLC   59 (315)
T ss_dssp             HHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcC
Confidence            5788888888885 399999999999999999998886665

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=92.98  E-value=4.6  Score=35.76  Aligned_cols=36  Identities=17%  Similarity=0.087  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334          204 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK  239 (445)
Q Consensus       204 ~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~  239 (445)
                      ....+..+.+.+......+...+..+++.++.|+..
T Consensus        89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~  124 (189)
T 2v71_A           89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA  124 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            466666777777777777777777888888888744

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.80  E-value=2.7  Score=47.46  Aligned_cols=112  Identities=18%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          143 TRLDEQRSELEDKISQLNAEIAAYNEVRERELP----LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK  218 (445)
Q Consensus       143 ~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~----~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~  218 (445)
                      ..+......++.++.+|+..+++..........    ....+..++..|+..+.++....    .+....+.+...+..+
T Consensus       917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~----~e~~~~~~~v~~L~~e  992 (1080)
T 2dfs_A          917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE----EEAKNATNRVLSLQEE  992 (1080)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            333344455555555555554443332221111    11334556666666555555432    2333444555555555


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334          219 FSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR  258 (445)
Q Consensus       219 l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~  258 (445)
                      +++++.++.++..+...++....+..++|+..+..+++..
T Consensus       993 ~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A          993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555544455555555554443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.37  E-value=2.8  Score=31.77  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=14.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          143 TRLDEQRSELEDKISQLNAEIAAYNE  168 (445)
Q Consensus       143 ~~l~~~~~~l~~~i~~l~~~~~~~~~  168 (445)
                      +.|.++..++-+.|.-|+.++++++.
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKe   34 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKE   34 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455666666666666555544

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=91.69  E-value=0.34  Score=45.34  Aligned_cols=161  Identities=13%  Similarity=0.081  Sum_probs=72.3

Q ss_pred             HHHHHcCCC----CCCCcccc-cCCCcchHHHHHHHHHH-HHhhHhhhhhhh------------HHHHHHHHhHHHHH--
Q 013334           90 EVVTTVNCP----MNFTLKDL-IRPDATRTEYFLSAILN-FCLYKDTKMNLL------------RPIAEDLTRLDEQR--  149 (445)
Q Consensus        90 ~~l~~~gv~----~DFt~~DL-~~P~~~R~~~iLSalIN-F~rFre~~~~~~------------~~~~~e~~~l~~~~--  149 (445)
                      ..+..||++    ++||..|| .+|+|.-++.++..++= |+.++-+-....            .+...-.. +....  
T Consensus        21 ~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~~g~~~e~~~~~~~~~~~~~pel~~~si~~l~-~~r~l~~   99 (250)
T 2ve7_C           21 IHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSN-LVTHLDS   99 (250)
T ss_dssp             HHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTHHHHH-HHHHHHH
T ss_pred             HHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHhccchhhcccChhhHHHHHHHHH-HHHHHHH
Confidence            556777874    14888999 69999999998888776 666643322100            00000000 00000  


Q ss_pred             ------------HHH----HHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          150 ------------SEL----EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG  213 (445)
Q Consensus       150 ------------~~l----~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~  213 (445)
                                  ..+    -.++..+-..+=.+-.-++......+++..+.+++..++..+......+..+++.++.+..
T Consensus       100 ~l~~~gv~DFtl~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~  179 (250)
T 2ve7_C          100 FLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD  179 (250)
T ss_dssp             HHHHTTCCCCCHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHcCCCCCcHhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                        000    1122222222222222222223344455555555555555555554455555555555555


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 013334          214 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL  251 (445)
Q Consensus       214 ~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l  251 (445)
                      +....+........++...+.+++-....+|+.++..+
T Consensus       180 e~~te~~p~~k~~~qly~~vt~i~w~~~~~~~~i~g~~  217 (250)
T 2ve7_C          180 EDTTVTIPSAVYVAQLYHQVSKIEWEYECEPGMVKGIH  217 (250)
T ss_dssp             ------CTTTHHHHHHHHHHHCCEECSCCTTTCEEEEC
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhceeecccCcchhceee
Confidence            55555444444455556666666666666666655433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=91.06  E-value=5.9  Score=32.82  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013334          202 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN  233 (445)
Q Consensus       202 ~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~  233 (445)
                      ...+..+...+.++...+..+...+......+
T Consensus        68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~   99 (129)
T 2fxo_A           68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMN   99 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444433333

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=90.86  E-value=11  Score=35.49  Aligned_cols=35  Identities=14%  Similarity=0.343  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 013334          180 VDAKVKELRQTIQDLNK-HQVSLRTTLNKLKEKTGA  214 (445)
Q Consensus       180 l~~e~~~L~~~L~~l~~-~q~~l~~~~~~lk~e~~~  214 (445)
                      +..++.+++.+|.-+.. .+..+....+.++....-
T Consensus        42 l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p   77 (273)
T 3s84_A           42 IGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTP   77 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33455555555544432 222334444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.61  E-value=4.6  Score=42.02  Aligned_cols=6  Identities=17%  Similarity=0.379  Sum_probs=2.2

Q ss_pred             hHHHHH
Q 013334          113 RTEYFL  118 (445)
Q Consensus       113 R~~~iL  118 (445)
                      |....+
T Consensus       403 ~~~~~l  408 (597)
T 3oja_B          403 RLLQYI  408 (597)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            333333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=90.20  E-value=3.5  Score=33.25  Aligned_cols=67  Identities=15%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             HHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334          169 VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  238 (445)
Q Consensus       169 ~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~  238 (445)
                      +.+...+.|..|......-++.|.+|.+.   +..-...+..+..+|...-+.+..++.++..+++.|..
T Consensus        39 k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~---fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G  105 (112)
T 1x79_B           39 SSEDSSHQISALVLRAQASEILLEELQQG---LSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG  105 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence            55667778888888888888888888665   44445667778888888888888888889999888873

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.14  E-value=8.2  Score=32.97  Aligned_cols=106  Identities=20%  Similarity=0.279  Sum_probs=51.7

Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 013334          133 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQD-LNKHQVSLRTTLNKLKEK  211 (445)
Q Consensus       133 ~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~-l~~~q~~l~~~~~~lk~e  211 (445)
                      ..++...+++..+..+......++..|...+.+-...+..-+.....++.++.+|.+.|.+ -|+--..-+.....+..+
T Consensus        37 ~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r  116 (154)
T 2ocy_A           37 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL  116 (154)
T ss_dssp             HTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444445555555555555554444444344555566666666666533 233333333444444444


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334          212 TGALDEKFSQTEFDLVQSVQQNADLRS  238 (445)
Q Consensus       212 ~~~l~~~l~~~~~~l~~l~qe~~~L~~  238 (445)
                      ...+..++.+....+..+..+...|+.
T Consensus       117 ~~~L~~ql~e~~~~l~~lq~ql~~LK~  143 (154)
T 2ocy_A          117 NKRLTEQLREKDTLLDTLTLQLKNLKK  143 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.64  E-value=4.6  Score=30.57  Aligned_cols=64  Identities=25%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334          150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS  220 (445)
Q Consensus       150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~  220 (445)
                      .+|+++|.++-..|.-+..       .+.+|..+|..|.++..++......+..+...++.+......+|.
T Consensus         9 eqLE~KIq~avdtI~lLqm-------EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQM-------EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555554444433322       344455555555555555444444444444444444444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=89.38  E-value=9.9  Score=32.87  Aligned_cols=64  Identities=13%  Similarity=0.146  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHH
Q 013334          358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEE  421 (445)
Q Consensus       358 ~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~  421 (445)
                      .+.++..++..|..+++...............+...+..++...+.+.-+..-+++.+...|..
T Consensus        91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq  154 (168)
T 3o0z_A           91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ  154 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4556666666666666666655555555566666666666666666655555566666665543

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=88.79  E-value=5.6  Score=30.55  Aligned_cols=76  Identities=17%  Similarity=0.353  Sum_probs=42.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334          136 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEK  211 (445)
Q Consensus       136 ~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e  211 (445)
                      .++...++.+......+..++..++....+++.+-+.+....+.++.++..|+..+-.+.=....|...++.++++
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE   78 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE   78 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666777777777777666665555555555555555554444443333333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.41  E-value=6.1  Score=29.88  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013334          154 DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  222 (445)
Q Consensus       154 ~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~  222 (445)
                      .++..|..+......+.......+.+.+.....+..++..|++.-..+..+++.+.........+|+..
T Consensus         6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A            6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444443333333222222233344455555566666666665666666666666666666555543

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=88.19  E-value=5.6  Score=30.01  Aligned_cols=61  Identities=16%  Similarity=0.297  Sum_probs=37.8

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334          176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  236 (445)
Q Consensus       176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L  236 (445)
                      .++.++.+|..|+.++..+...-+.-..+.+.++.+...+...+.-.-+++..+++-+.+|
T Consensus        14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL   74 (79)
T 3cvf_A           14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            3455556666666666666665555555566666666666666666666666666666655

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=87.42  E-value=6.9  Score=28.96  Aligned_cols=58  Identities=17%  Similarity=0.283  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334          179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  236 (445)
Q Consensus       179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L  236 (445)
                      .++.+|..|+.++..+...-+.-..+...++.+...+...+.-.-+++..+++...+|
T Consensus        11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL   68 (72)
T 3cve_A           11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            3344455555555555444444444444445555555555555555555555555544

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=87.09  E-value=6  Score=32.40  Aligned_cols=93  Identities=9%  Similarity=0.077  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH------H
Q 013334          332 AKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV------K  405 (445)
Q Consensus       332 ~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~------~  405 (445)
                      ..++.|+..++.|+..++....+....+.++...+..|..+++...+.........+.+..++..+.....+.      -
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~   94 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSL   94 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3455677777777777777788888888888888888888888876554444444555555555443322211      1


Q ss_pred             HhcHHHHHHHHHHHHHHHH
Q 013334          406 ESGAAKLQELASKAEEIVE  424 (445)
Q Consensus       406 ~~~e~ei~~i~~~y~~l~~  424 (445)
                      ..++...+..+..|.+|.+
T Consensus        95 ~e~E~kAqa~Eerf~KLKe  113 (120)
T 3i00_A           95 SEIERKAQANEQRYSKLKE  113 (120)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444455555655543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=87.03  E-value=4.3  Score=41.21  Aligned_cols=17  Identities=18%  Similarity=0.571  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013334          150 SELEDKISQLNAEIAAY  166 (445)
Q Consensus       150 ~~l~~~i~~l~~~~~~~  166 (445)
                      ..+..+|+.|+.+++++
T Consensus        60 rDltkrINELKnqLEdl   76 (562)
T 3ghg_A           60 QDFTNRINKLKNSLFEY   76 (562)
T ss_dssp             HHHHHHHHHHHHHHTHH
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            34444444444444444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=86.54  E-value=13  Score=30.77  Aligned_cols=19  Identities=37%  Similarity=0.471  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013334          148 QRSELEDKISQLNAEIAAY  166 (445)
Q Consensus       148 ~~~~l~~~i~~l~~~~~~~  166 (445)
                      .+..+..+...+..+.+++
T Consensus        35 ~r~ele~~~~~l~~Ek~~L   53 (129)
T 2fxo_A           35 RRKELEEKMVSLLQEKNDL   53 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=86.19  E-value=11  Score=29.60  Aligned_cols=88  Identities=15%  Similarity=0.234  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013334          144 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE  223 (445)
Q Consensus       144 ~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~  223 (445)
                      .+......+...-+.+..++..+..       ....+..++..++.+...+...-..+-.+++.++-+..++.+++.++.
T Consensus         8 ~l~~eL~~l~~eE~~L~~eL~~lEk-------e~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~   80 (96)
T 3q8t_A            8 QLQRELKELALEEERLIQELEDVEK-------NRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE   80 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444422       223455667777777777777777777888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHh
Q 013334          224 FDLVQSVQQNADLRS  238 (445)
Q Consensus       224 ~~l~~l~qe~~~L~~  238 (445)
                      ..+.-.....++|+.
T Consensus        81 ~q~~~~~~qLdkL~K   95 (96)
T 3q8t_A           81 NQMRYAQMQLDKLKK   95 (96)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhc
Confidence            888877777777764

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.55  E-value=3.6  Score=34.29  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=46.9

Q ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013334          129 DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL-NKHQVSLRTTLNK  207 (445)
Q Consensus       129 e~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l-~~~q~~l~~~~~~  207 (445)
                      ..+...|+.+..+++.+.........++..|...+.+-...+..-+.....++.++.+|.+.|.+= |+--..-+.....
T Consensus        21 ~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~  100 (135)
T 2e7s_A           21 KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYA  100 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555554444445555555555555444444333334455666666666666332 3332233333444


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334          208 LKEKTGALDEKFSQTEFDLVQSVQQNADL  236 (445)
Q Consensus       208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L  236 (445)
                      +..+...+...+.+.+..+..+..+...|
T Consensus       101 ~e~r~~~L~~ql~e~e~ll~~lq~QL~~L  129 (135)
T 2e7s_A          101 IEILNKRLTEQLREKDMLLDTLTLQLKNL  129 (135)
T ss_dssp             HHHHHHHHHHTTTHHHHCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444443333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.22  E-value=15  Score=28.79  Aligned_cols=57  Identities=23%  Similarity=0.436  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHH
Q 013334          135 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI  191 (445)
Q Consensus       135 ~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L  191 (445)
                      |+...+++..+..+......++..|...+.+-...+..-+.....++.++.+|.+.|
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL   63 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   63 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555544444333334444555555555544

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=82.69  E-value=15  Score=28.52  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=26.3

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013334          177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD  235 (445)
Q Consensus       177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~  235 (445)
                      |..|++.|+.|+.++..+.....  ......+..++..+...|..+..+-..+.-++.+
T Consensus        25 VR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn   81 (93)
T 3s4r_A           25 VRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN   81 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666665544321  1222333444444444444444443333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00