Citrus Sinensis ID: 013340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MLQTVPPVTSSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccEEEEEccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccEEcccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccEEcccEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEccccccccccEEEEccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEcccccccccccccEEEEcccEEccccccccEEEEEEccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccEEEccccccccccccccccccccccccccccHccEccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccccccccEEEEccEEEEcccccccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccEEEcccccccHcccccHcccccccccHHHcEHcccccccEEEEEccccccHHHHHHHHHcccccHEEEEEEHccccccHHHcHHHEEcccccccHHHHHcc
Coil and Loop (DISEMBL)
mlqtvppvtsslwnsnpsqrvgqkgpmefkspqlssisphnLLLKFRCEHLqnaesmssrtflcasrrplqdlsfkkqkaypqnvdlptlppkkkkkpypipieKIRQVAKKDKRLAEmgiekpleppkngilvpdLIHVAYEVIDAWKLLIKGLAQLLHvipvygcsecsevhvahsghhiqncqgataaKRRSFHSWVrgsindillpvesyhlydpfgrrikhesrfdydriPAVVELCIQagvdipeypsrrrtkpirtLGKKvidrggfveeprpwrsrgssalsdldtdgacgrlpppsladvpriAQETMDAYEVVRSGVTKLMRKYSVkacgycpevhigpwghnvklcgafkhqwrdgkhgwqdavvdevfppnyvwhvqdpkgpplRSALKRYYGKAPAVVEVCMQAgaqvpeqykptmrldiivpeseevdlva
Flexible Loop (DISEMBL)
mlqtvppvtsslwnsnpsqRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDlsfkkqkaypqnvdlptlppkkkkkpypipiekirQVAKKDKRLAEMgiekpleppkngiLVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIqagvdipeypsrrrtkpirtlgkkvidrggfveeprpwrsrgssALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGaqvpeqykpTMRLDIivpeseevdlva
Low Complexity Region (SEG)
MLQTVPPVTSSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLppkkkkkpypipiekiRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA
Disordered region (IsUnstruct)
****************************************NLLLKFRCEHL**********FLC*****************************************************************NGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYP*******IRTLGKKVIDRGGF*************************************IAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIV**********
Disordered Region (DISOPRED)
******P**SSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQ*********************************D**********KPYPIPIEKI************************GILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQG*******S*HSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRG***************************************IAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPES***DLVA
Disordered Region (DISEMBL)
**********SLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAH*****************SFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA
Disordered Region (DISPRO)
***TVPPVTSSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGG*****************************PPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEV**VA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQTVPPVTSSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
Q9XIR4	436	APO protein 1, chloroplas	yes	no	0.874	0.892	0.677	1e-161
Q8W4A5	440	APO protein 2, chloroplas	no	no	0.858	0.868	0.441	9e-93
Q9FH50	402	APO protein 3, mitochondr	no	no	0.802	0.888	0.425	6e-84
Q9LSZ0	337	APO protein 4, mitochondr	no	no	0.595	0.786	0.385	1e-49

>sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1

 Score =  566 bits (1460), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/391 (67%), Positives = 329/391 (84%), Gaps = 2/391 (0%)

Query: 57  MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 116
           M   T  C +++  +  SFKK+    QNVDLP + PK KKKPYPIP ++I++ A+KDK+L
Sbjct: 46  MRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKL 105

Query: 117 AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 176
           A+MGIEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC  VHVA
Sbjct: 106 AQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVA 165

Query: 177 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 236
           + GH+I++C G T ++RR  HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIP
Sbjct: 166 NVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIP 225

Query: 237 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDT 294
           A+VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P  S   SS L++LDT
Sbjct: 226 ALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDT 285

Query: 295 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 354
            G   R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 286 LGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 345

Query: 355 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 414
           KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+C
Sbjct: 346 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 405

Query: 415 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
           M +GA+VP++YK  MRLDIIVP+S+E D+VA
Sbjct: 406 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 436

Involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts. May participate in 4Fe-4S cofactor incorporation into psaA and/or psaB during translation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1

 Score =  340 bits (873), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 173/392 (44%), Positives = 254/392 (64%), Gaps = 10/392 (2%)

Query: 57  MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 116
           ++SR  L   RR    L    +   PQN DLP    +++KKP+P+PI  +R+ A++  + 
Sbjct: 56  LNSRVVLSKERR---SLPLVVRNDRPQNEDLPKQYTRREKKPFPVPIVDLRRAARERVKN 112

Query: 117 AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 176
            +   ++PL PPKNG++V  L+ +AY+V +A   LI  L +L+ V+ V  C  C+E+HV 
Sbjct: 113 NKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVG 172

Query: 177 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 236
             GH  ++C+G   ++R+  H W    I D+++P+E+YHL+D  G+RI+H+ RF   R+P
Sbjct: 173 PYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVP 232

Query: 237 AVVELCIQAGVDIPEYPSRRRTKPIRTLGK-KVIDRGGFVEEPRPWRSRGSSALSDLDTD 295
           AVVELCIQ GV+IPE+P++RR KPI  +GK + +D     +E              L T+
Sbjct: 233 AVVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVD----ADETELPDPEPQPPPVPLLTE 288

Query: 296 GACGRLPPPSLAD-VPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 354
                + PPS  +    +A+ET+ A+E +R+G  KLMR Y V+ CGYCPEVH+GP GH  
Sbjct: 289 LPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKA 348

Query: 355 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 414
           + CGAFKHQ R+G+HGWQ AV+D++ PP YVWHV D  GPP++  L+ +YG+APAVVE+C
Sbjct: 349 QNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEIC 408

Query: 415 MQAGAQVPEQYKPTMRLDIIVPES-EEVDLVA 445
            QAGA VPE Y+ TMRL++ +P S +E ++V 
Sbjct: 409 AQAGAVVPEHYRATMRLEVGIPSSVKEAEMVV 440

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1

 Score =  311 bits (797), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 157/369 (42%), Positives = 240/369 (65%), Gaps = 12/369 (3%)

Query: 82  PQNVDLPTLPPKKK--KKPYPIPIEKIRQVAKKDKRLAEMGIEKPLE-PPKNGILVPDLI 138
           P   D+P  PPK K  +KPYP P++++ + AK++K+L ++   + LE PP NG+LVP+L+
Sbjct: 41  PLYADVPK-PPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELV 99

Query: 139 HVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHS 198
            VA+ V     +L+ GL++++H +PV+ C  C+EVH+   GH I+ C G  +  R + H 
Sbjct: 100 DVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHV 159

Query: 199 WVRGSINDILLPVESYHLYDPFGR-RIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRR 257
           W RG ++D++L  + +HLYD   + R+ H+ RF   +I AV+ELCIQAGVD+ ++PS+RR
Sbjct: 160 WKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRR 219

Query: 258 TKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETM 317
           +KP+ ++  +++D     +         ++ L  +  D  C          +  ++ ETM
Sbjct: 220 SKPVYSIEGRIVDFEDVNDGNSELAVTSTTTL--IQEDDRCKE----EKKSLKELSFETM 273

Query: 318 DAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVD 377
           +++  +  GV KLM +Y V  CGYCPE+ +GP GH V++C A KHQ RDG H WQ+A +D
Sbjct: 274 ESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATID 333

Query: 378 EVFPPNYVWHVQDPK-GPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVP 436
           +V  P YVWHV+DP  G  L ++LKR+YGKAPAV+E+C+Q GA VP+QY   MRLD++ P
Sbjct: 334 DVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 393

Query: 437 ESEEVDLVA 445
           + +EVDLVA
Sbjct: 394 QRDEVDLVA 402

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/298 (38%), Positives = 159/298 (53%), Gaps = 33/298 (11%)

Query: 134 VPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKR 193
           V +++ VA E++ A K LI  +A LL V PV  C  CSEV V   GH I+ C+       
Sbjct: 55  VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114

Query: 194 RSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYP 253
              H WV GSINDIL+PVESYHL++     I+H+ RFDYDR+PA++ELC QAG   PE  
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE-- 172

Query: 254 SRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIA 313
                        +++      + P+         +S+ D       LP     D+  + 
Sbjct: 173 -------------EILQYSEIHDNPQ---------ISEEDIRS----LPA---GDLKYVG 203

Query: 314 QETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQD 373
              + A+E VR+GV KL+  Y  K C  C EVH+GP GH  +LCG FK++   G H W+ 
Sbjct: 204 ANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEK 263

Query: 374 AVVDEVFPPNYVWHVQDPKGP-PLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMR 430
           A V+++ P   VWH + P+ P  L    + YYG APA+V +C   GA VP +Y   M+
Sbjct: 264 AGVNDLVPEKMVWH-RRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
225453234	444	PREDICTED: APO protein 1, chloroplastic	0.995	0.997	0.719	1e-179
356559935	438	PREDICTED: APO protein 1, chloroplastic-	0.979	0.995	0.675	1e-179
356529350	438	PREDICTED: APO protein 1, chloroplastic-	0.973	0.988	0.675	1e-177
147861249	932	hypothetical protein VITISV_018985 [Viti	0.903	0.431	0.746	1e-174
449463615	443	PREDICTED: APO protein 1, chloroplastic-	0.995	1.0	0.676	1e-165
297837773	435	hypothetical protein ARALYDRAFT_475482 [	0.876	0.896	0.687	1e-164
357498619	451	APO protein [Medicago truncatula] gi|355	0.941	0.929	0.644	1e-160
79320742	460	APO protein 1 [Arabidopsis thaliana] gi|	0.874	0.845	0.677	1e-159
255559615	400	APO protein 3, mitochondrial precursor,	0.898	1.0	0.677	1e-159
15217744	436	APO protein 1 [Arabidopsis thaliana] gi|	0.874	0.892	0.677	1e-159

>gi|225453234|ref|XP_002264685.1| PREDICTED: APO protein 1, chloroplastic [Vitis vinifera] gi|297734690|emb|CBI16741.3| unnamed protein product [Vitis vinifera]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 321/446 (71%), Positives = 378/446 (84%), Gaps = 3/446 (0%)

Query: 1   MLQTVPPVTSSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSR 60
           MLQ  P ++ + WN  PSQR    G M+FK P+LS+   + L LKF+   +   +   S 
Sbjct: 1   MLQQPPVISPASWN--PSQRGVCLGIMDFKRPKLSASRSYTLGLKFQQGQILTGQPKISG 58

Query: 61  TFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMG 120
           TFLC S++P +D +FKKQ AYPQNVDLP + PKKKKKPYPIP++KIRQ A+ DK+LA+ G
Sbjct: 59  TFLCVSQKPQEDATFKKQIAYPQNVDLPPILPKKKKKPYPIPLKKIRQAARDDKKLAQKG 118

Query: 121 IEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGH 180
           IEKPLEPPKNG++VPDL+ VAYEV+DAWK+LIKGLAQLLHVIPV+GCSECSE+HVA SGH
Sbjct: 119 IEKPLEPPKNGLIVPDLVPVAYEVLDAWKVLIKGLAQLLHVIPVHGCSECSEIHVAQSGH 178

Query: 181 HIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVE 240
           HIQ+C G ++ KRR  HSWV+GSIND+L+P+ESYHLYDPFGRRIKHE+RF YDRIPAVVE
Sbjct: 179 HIQDCTGPSSVKRRGLHSWVKGSINDVLIPIESYHLYDPFGRRIKHETRFSYDRIPAVVE 238

Query: 241 LCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSA-LSDLDTDGACG 299
           LC+QAGVD+PEYPSRRRT PIR +GKKVIDRGGFVEEP P+ S  SS+ L D+DT GA G
Sbjct: 239 LCVQAGVDLPEYPSRRRTIPIRMIGKKVIDRGGFVEEPEPFHSSDSSSLLMDIDTHGAFG 298

Query: 300 RLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGA 359
           R PPP L+D+PRIAQET+DAYEVVR GV KLMRKY+VKACGYC EVH+GPWGHN KLCG 
Sbjct: 299 RFPPPPLSDIPRIAQETIDAYEVVRWGVRKLMRKYTVKACGYCSEVHVGPWGHNAKLCGE 358

Query: 360 FKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGA 419
           FKHQWRDGKHGWQDA V+EV PPNYV+H++DPKGPPLRS LKR+YGKAPAVVEVCMQAGA
Sbjct: 359 FKHQWRDGKHGWQDATVEEVIPPNYVYHLRDPKGPPLRSGLKRFYGKAPAVVEVCMQAGA 418

Query: 420 QVPEQYKPTMRLDIIVPESEEVDLVA 445
           QVP++YKP MRLDI++P++EE  LVA
Sbjct: 419 QVPDKYKPMMRLDIVIPDTEESRLVA 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559935|ref|XP_003548251.1| PREDICTED: APO protein 1, chloroplastic-like [Glycine max]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 298/441 (67%), Positives = 359/441 (81%), Gaps = 5/441 (1%)

Query: 5   VPPVTSSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLC 64
           +P ++S+LW+  PS        +EF  P LS+   ++L LKF C+      S      +C
Sbjct: 3   LPLLSSALWD--PSHNCVSSS-VEFIRPLLSASKSYSLGLKFNCQQFCKGRSKLPGVLVC 59

Query: 65  ASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKP 124
           ASRRP    +  ++K  PQN DLP + PK KKKPYPIP ++I+Q  ++D++LA MGIEKP
Sbjct: 60  ASRRPKG--TVWRRKTLPQNEDLPPILPKNKKKPYPIPFKEIKQAGREDRKLAHMGIEKP 117

Query: 125 LEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQN 184
           LEPPKNG+LVPDL+ VAYEV DAWKLLI+GLAQLLHVIP +GCSECSEVHVA +GHHI++
Sbjct: 118 LEPPKNGLLVPDLVPVAYEVFDAWKLLIEGLAQLLHVIPAHGCSECSEVHVAQTGHHIRD 177

Query: 185 CQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQ 244
           C G    +RRS H+WV+GS+NDIL+P+ESYHL+DPFGRRIKH++RF+YDRIPAVVELCIQ
Sbjct: 178 CSGTNGRQRRSSHAWVKGSVNDILVPIESYHLFDPFGRRIKHDTRFEYDRIPAVVELCIQ 237

Query: 245 AGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPP 304
           AGVDIPEYPSRRRT PIR LG++VIDRGG +EEP+PWR    S+L+D DT  A  R P P
Sbjct: 238 AGVDIPEYPSRRRTNPIRMLGRRVIDRGGNLEEPKPWRFADPSSLNDFDTYRASERFPRP 297

Query: 305 SLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQW 364
           SL+D+P+IAQETM AYE V+ GV KLMRKY+VKACGYC EVH+GPWGHN KLCGAFKHQW
Sbjct: 298 SLSDLPKIAQETMSAYETVKKGVKKLMRKYTVKACGYCTEVHVGPWGHNAKLCGAFKHQW 357

Query: 365 RDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQ 424
           RDGKHGWQDA VDEVFPPNYVWHV+DP+GPPL SAL+RYYGKAPAVVEVCMQAGAQ+PE+
Sbjct: 358 RDGKHGWQDATVDEVFPPNYVWHVRDPRGPPLASALRRYYGKAPAVVEVCMQAGAQIPEE 417

Query: 425 YKPTMRLDIIVPESEEVDLVA 445
           YKP MRLDII+P++EE  ++A
Sbjct: 418 YKPMMRLDIIIPDTEEARMIA 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529350|ref|XP_003533257.1| PREDICTED: APO protein 1, chloroplastic-like [Glycine max]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 296/438 (67%), Positives = 356/438 (81%), Gaps = 5/438 (1%)

Query: 8   VTSSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASR 67
           ++S+LW+  PS  +     +EF  P LS+   ++L LKF C+      S      +CASR
Sbjct: 6   LSSALWD--PSH-ICVSPSLEFIWPHLSASKSYSLGLKFNCQQFCKGRSTLPGVLVCASR 62

Query: 68  RPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEP 127
           RP    +  ++K   QN DLP + PK KKKPYPIP ++I+Q  ++D++LA MGIEKPLEP
Sbjct: 63  RP--KGTIWRRKTLQQNEDLPPILPKNKKKPYPIPFKEIKQAGREDRKLAHMGIEKPLEP 120

Query: 128 PKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQG 187
           PKNG+LVPDLI VAYEV  AWKLLIKGLAQLLHVIPV+GCSEC+EVHVA +GHHI++C G
Sbjct: 121 PKNGLLVPDLIPVAYEVFGAWKLLIKGLAQLLHVIPVHGCSECTEVHVAQTGHHIRDCSG 180

Query: 188 ATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGV 247
               +RRS H+WV+GS+NDIL+P+ESYHL+DPFGRRIKH++RF+YDRIPAVVELC+QAGV
Sbjct: 181 TNGRQRRSSHAWVKGSVNDILVPIESYHLFDPFGRRIKHDTRFEYDRIPAVVELCVQAGV 240

Query: 248 DIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLA 307
           DIPEYPSRRRT PIR LG++VIDRGG +EEP+PWR    S+L+D DT  A  R P PSL+
Sbjct: 241 DIPEYPSRRRTNPIRILGRRVIDRGGNLEEPKPWRFADPSSLNDFDTYRASERFPLPSLS 300

Query: 308 DVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDG 367
           D+P+IAQETM AYE V+ GV KLMRKY+VKACGYC EVH+GPWGHN KLCGAFKHQWRDG
Sbjct: 301 DLPKIAQETMSAYETVKKGVKKLMRKYTVKACGYCTEVHVGPWGHNAKLCGAFKHQWRDG 360

Query: 368 KHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKP 427
           KHGWQDA VDEVFPPNYVWHV+DP+GPPL SAL+RYYGKAPAVVEVCMQAGAQ+PE YKP
Sbjct: 361 KHGWQDATVDEVFPPNYVWHVRDPRGPPLASALRRYYGKAPAVVEVCMQAGAQIPEDYKP 420

Query: 428 TMRLDIIVPESEEVDLVA 445
            MRLDII+P++EE  ++A
Sbjct: 421 MMRLDIIIPDTEEARMIA 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 301/403 (74%), Positives = 353/403 (87%), Gaps = 1/403 (0%)

Query: 44  LKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPI 103
           ++F+   +   +   S TFLC S++P +D +FKKQ AYPQNVDLP + PKKKKKPYPIP+
Sbjct: 530 IEFQQGQILTGQPKISGTFLCVSQKPQEDATFKKQIAYPQNVDLPPILPKKKKKPYPIPL 589

Query: 104 EKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIP 163
           +KIRQ A+ DK+LA+ GIEKPLEPPKNG++VPDL+ VAYEV+DAWK+LIKGLAQLLHVIP
Sbjct: 590 KKIRQAARDDKKLAQKGIEKPLEPPKNGLIVPDLVPVAYEVLDAWKVLIKGLAQLLHVIP 649

Query: 164 VYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRR 223
           V+GCSECSE+HVA SGHHIQ+C G ++ KRR  HSWV+GSIND+L+P+ESYHLYDPFGRR
Sbjct: 650 VHGCSECSEIHVAQSGHHIQDCTGPSSVKRRGLHSWVKGSINDVLIPIESYHLYDPFGRR 709

Query: 224 IKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRS 283
           IKHE+RF YDRIPAVVELC+QAGVD+PEYPSRRRT PIR +GKKVIDRGGFVEEP P+ S
Sbjct: 710 IKHETRFSYDRIPAVVELCVQAGVDLPEYPSRRRTIPIRMIGKKVIDRGGFVEEPEPFHS 769

Query: 284 RGSSA-LSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYC 342
             SS+ L D+DT GA GR PPP L+D+PRIAQET+DAYEVVR GV KLMRKY+VKACGYC
Sbjct: 770 SDSSSLLMDIDTHGAFGRFPPPPLSDIPRIAQETIDAYEVVRWGVRKLMRKYTVKACGYC 829

Query: 343 PEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKR 402
            EVH+GPWGHN KLCG FKHQWRDGKHGWQDA V+EV PPNYV+H++DPKGPPLRS LKR
Sbjct: 830 SEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATVEEVIPPNYVYHLRDPKGPPLRSGLKR 889

Query: 403 YYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
           +YGKAPAVVEVCMQAGAQVP++YKP MRLDI++P++EE  LVA
Sbjct: 890 FYGKAPAVVEVCMQAGAQVPDKYKPMMRLDIVIPDTEESRLVA 932

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463615|ref|XP_004149527.1| PREDICTED: APO protein 1, chloroplastic-like [Cucumis sativus] gi|449505817|ref|XP_004162576.1| PREDICTED: APO protein 1, chloroplastic-like [Cucumis sativus]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/445 (67%), Positives = 353/445 (79%), Gaps = 2/445 (0%)

Query: 1   MLQTVPPVTSSLWNSNPSQRVGQKGPMEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSR 60
           MLQ +P V++  W+  PSQ     G +EF S  LS++  + L  KF  + L      + R
Sbjct: 1   MLQILPAVSTCSWD--PSQMGILIGNVEFTSRHLSALGSYTLRPKFAHKLLSQKVPTALR 58

Query: 61  TFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMG 120
           T    S+   ++   KKQ  Y QNVDLP + PKKKKKPYPIPI++I++ A+ DK LA+ G
Sbjct: 59  TLSYTSQEYGKEPVSKKQDMYRQNVDLPAILPKKKKKPYPIPIKQIKRAARADKELAQRG 118

Query: 121 IEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGH 180
           IEKPLEP KNG+LVPDLI VA++V+DAWK+LIKGL+ LLHVIPVY C ECSEVHVAHSGH
Sbjct: 119 IEKPLEPGKNGLLVPDLIPVAHQVMDAWKILIKGLSHLLHVIPVYACRECSEVHVAHSGH 178

Query: 181 HIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVE 240
           HIQ+C GAT+A RRSFHSWV GSIND+L+P+ESYHLYDPFGRRIKHE+RF+YDRIPAVVE
Sbjct: 179 HIQDCLGATSATRRSFHSWVTGSINDVLVPIESYHLYDPFGRRIKHETRFEYDRIPAVVE 238

Query: 241 LCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGR 300
           LCIQAGVDIPEYPSRRRTKPI+ +GKKVIDRGG +EEP+PW+S  S  L D DT GA  R
Sbjct: 239 LCIQAGVDIPEYPSRRRTKPIQMIGKKVIDRGGNMEEPKPWKSCDSYPLLDFDTQGAPQR 298

Query: 301 LPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAF 360
             PP   DVPRIAQET+ AYE VR GV  LM+KY+VKACGYCPEVH+GPWGHN KLCG F
Sbjct: 299 FAPPLPEDVPRIAQETIAAYETVRYGVRMLMKKYTVKACGYCPEVHVGPWGHNAKLCGEF 358

Query: 361 KHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQ 420
           KHQWRDGKHGWQDA +DEV P NYVWHV+DPKGPPL   LKR+YGKAPAVVEVC+QAGA 
Sbjct: 359 KHQWRDGKHGWQDATLDEVLPRNYVWHVRDPKGPPLIGTLKRFYGKAPAVVEVCIQAGAT 418

Query: 421 VPEQYKPTMRLDIIVPESEEVDLVA 445
           +P++Y P MRLDI++P+SEE   VA
Sbjct: 419 IPKKYLPMMRLDIVLPDSEEARSVA 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837773|ref|XP_002886768.1| hypothetical protein ARALYDRAFT_475482 [Arabidopsis lyrata subsp. lyrata] gi|297332609|gb|EFH63027.1| hypothetical protein ARALYDRAFT_475482 [Arabidopsis lyrata subsp. lyrata]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 269/391 (68%), Positives = 334/391 (85%), Gaps = 1/391 (0%)

Query: 56  SMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKR 115
           SM  RT +C ++   +  SFKK+    QNVDLP + PK KKKPYP+P ++I++ A+KDK+
Sbjct: 45  SMRLRTIVCFNQNLTEHTSFKKRHVSTQNVDLPPILPKNKKKPYPVPFQQIQEEARKDKK 104

Query: 116 LAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHV 175
           LA+MGIEK LEPPKNG+LVP+L+ VAY+VID WKLLIKGLAQLLHV+PV+ CSEC  VHV
Sbjct: 105 LAQMGIEKQLEPPKNGLLVPNLVPVAYQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHV 164

Query: 176 AHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRI 235
           A++GH+I++C G T ++RR  HSWV+G+IND+L+PVESYH++DPFGRRIKHE+RFDY+RI
Sbjct: 165 ANAGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMHDPFGRRIKHETRFDYERI 224

Query: 236 PAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRGSSALSDLDT 294
           P +VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG++ EP +P  S  SS L++LDT
Sbjct: 225 PVLVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYLREPDKPQTSSLSSPLAELDT 284

Query: 295 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 354
            GAC R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 285 LGACERHPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 344

Query: 355 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 414
           KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+C
Sbjct: 345 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 404

Query: 415 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
           M +GA+VP++YK  MRLDIIVP+S+E D+VA
Sbjct: 405 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 435

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498619|ref|XP_003619598.1| APO protein [Medicago truncatula] gi|355494613|gb|AES75816.1| APO protein [Medicago truncatula]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 270/419 (64%), Positives = 337/419 (80%)

Query: 27  MEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVD 86
           MEF    LS+ + ++   KF+C+      S      LC +R+   D    ++    QNVD
Sbjct: 33  MEFMGCHLSASNSYSPTFKFKCQQFDKCRSALPGVILCGNRKLRPDEFVWRRNESTQNVD 92

Query: 87  LPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVID 146
            P   PK KKKPYPIP ++I+  AK +++LA  GIEKPLEPPKNG+LVPDL+ VAYEV D
Sbjct: 93  FPPKLPKGKKKPYPIPFKQIKHAAKMERKLASKGIEKPLEPPKNGLLVPDLVPVAYEVFD 152

Query: 147 AWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSIND 206
           AWKLLIKGL+QLLHVIP YGCSECSEVHVA +GH I +C+G T++ R S H+WVRG++ND
Sbjct: 153 AWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDCEGRTSSTRHSSHAWVRGNVND 212

Query: 207 ILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGK 266
           IL+P+ESYHL+DPFG+RI H++RF+YDRIPAVVELCIQAGVDIPEYPSRRRT PIR +G+
Sbjct: 213 ILVPIESYHLFDPFGKRIMHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPIRMVGR 272

Query: 267 KVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSG 326
           +V+DRGG +EEP+P R+   S++ D DT  AC R PPP L+DVP+IAQET+DAY+ VR G
Sbjct: 273 RVLDRGGHLEEPKPLRTAEFSSVIDFDTYRACERFPPPPLSDVPKIAQETIDAYQTVRKG 332

Query: 327 VTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVW 386
           V KLM+KY+VKACGYC EVH+GPWGHN KLCG+FKHQWRDGKHGWQDA +DEV PPNYVW
Sbjct: 333 VRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQWRDGKHGWQDATLDEVLPPNYVW 392

Query: 387 HVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
           HV+D  GPP+++ALKRYYGKAPAVVEVC+QAGA++P +YKP MRLDI++P+++E  ++A
Sbjct: 393 HVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAEYKPLMRLDIVIPDTDEAGMIA 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79320742|ref|NP_001031234.1| APO protein 1 [Arabidopsis thaliana] gi|332196172|gb|AEE34293.1| APO protein 1 [Arabidopsis thaliana]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/391 (67%), Positives = 329/391 (84%), Gaps = 2/391 (0%)

Query: 57  MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 116
           M   T  C +++  +  SFKK+    QNVDLP + PK KKKPYPIP ++I++ A+KDK+L
Sbjct: 70  MRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKL 129

Query: 117 AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 176
           A+MGIEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC  VHVA
Sbjct: 130 AQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVA 189

Query: 177 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 236
           + GH+I++C G T ++RR  HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIP
Sbjct: 190 NVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIP 249

Query: 237 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDT 294
           A+VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P  S   SS L++LDT
Sbjct: 250 ALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDT 309

Query: 295 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 354
            G   R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 310 LGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 369

Query: 355 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 414
           KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+C
Sbjct: 370 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 429

Query: 415 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
           M +GA+VP++YK  MRLDIIVP+S+E D+VA
Sbjct: 430 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559615|ref|XP_002520827.1| APO protein 3, mitochondrial precursor, putative [Ricinus communis] gi|223539958|gb|EEF41536.1| APO protein 3, mitochondrial precursor, putative [Ricinus communis]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/419 (67%), Positives = 337/419 (80%), Gaps = 19/419 (4%)

Query: 27  MEFKSPQLSSISPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVD 86
           MEF+SPQLS++S  NL LKF  + LQ      S+TF+CA +RP Q  +  KQ++YPQNVD
Sbjct: 1   MEFRSPQLSTLSSENLRLKFGLQQLQKGVPQISKTFICAYQRPRQKQNVNKQESYPQNVD 60

Query: 87  LPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVID 146
           LP + PKKKKKPYPIP   I++ A++DK+LAEMGIEKPLEPPKNG+L     H+++  I 
Sbjct: 61  LPPILPKKKKKPYPIPFRLIQKAARRDKKLAEMGIEKPLEPPKNGLLELHSSHMSFLYIL 120

Query: 147 AWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSIND 206
           A                    +ECSEVHVAH+GH IQ+C G T+AKR SFHSW++GSI+D
Sbjct: 121 A-------------------GNECSEVHVAHTGHCIQDCLGQTSAKRHSFHSWIKGSIDD 161

Query: 207 ILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGK 266
           +L+PVESYHLYDPFGRRIKHE+RFDYDRIPAVVELCIQAGVD PEYPSRRRT P+R +GK
Sbjct: 162 VLVPVESYHLYDPFGRRIKHETRFDYDRIPAVVELCIQAGVDKPEYPSRRRTNPVRMIGK 221

Query: 267 KVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSG 326
           KVIDRGG+VEEP PWRS   +A  D DT  AC R  PPSL  VPRIAQET+DA+E+VRSG
Sbjct: 222 KVIDRGGYVEEPTPWRSGNPTAPIDFDTYRACERFSPPSLEYVPRIAQETIDAFEIVRSG 281

Query: 327 VTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVW 386
           V KLMRKY+VKACGYC EVH+GPWGHNVKLCG FKHQWRDGKHGWQDA ++EVFPP YVW
Sbjct: 282 VRKLMRKYTVKACGYCSEVHVGPWGHNVKLCGEFKHQWRDGKHGWQDATLEEVFPPKYVW 341

Query: 387 HVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
           HV+DPKGPPL+ ALK++YGKAPAVVE+CMQAGA++PE+YKP MRLDI++PE++E  LVA
Sbjct: 342 HVRDPKGPPLKGALKKFYGKAPAVVEMCMQAGAEIPEKYKPMMRLDIMIPETDEAKLVA 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217744|ref|NP_176661.1| APO protein 1 [Arabidopsis thaliana] gi|68565082|sp|Q9XIR4.1|APO1_ARATH RecName: Full=APO protein 1, chloroplastic; AltName: Full=Accumulation of photosystem I protein 1; AltName: Full=Protein ACCUMULATION OF PHOTOSYSTEM ONE 1; Flags: Precursor gi|5042416|gb|AAD38255.1|AC006193_11 Unknown protein [Arabidopsis thaliana] gi|42794381|gb|AAS45665.1| chloroplast APO1 [Arabidopsis thaliana] gi|110742381|dbj|BAE99113.1| hypothetical protein [Arabidopsis thaliana] gi|114213523|gb|ABI54344.1| At1g64810 [Arabidopsis thaliana] gi|332196171|gb|AEE34292.1| APO protein 1 [Arabidopsis thaliana]

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/391 (67%), Positives = 329/391 (84%), Gaps = 2/391 (0%)

Query: 57  MSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRL 116
           M   T  C +++  +  SFKK+    QNVDLP + PK KKKPYPIP ++I++ A+KDK+L
Sbjct: 46  MRLGTVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKL 105

Query: 117 AEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVA 176
           A+MGIEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC  VHVA
Sbjct: 106 AQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVA 165

Query: 177 HSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP 236
           + GH+I++C G T ++RR  HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIP
Sbjct: 166 NVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIP 225

Query: 237 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDT 294
           A+VELCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P  S   SS L++LDT
Sbjct: 226 ALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDT 285

Query: 295 DGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNV 354
            G   R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+V
Sbjct: 286 LGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSV 345

Query: 355 KLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVC 414
           KLCG FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+C
Sbjct: 346 KLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEIC 405

Query: 415 MQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
           M +GA+VP++YK  MRLDIIVP+S+E D+VA
Sbjct: 406 MHSGARVPQRYKAMMRLDIIVPDSQEADMVA 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2010906	460	APO1 "ACCUMULATION OF PHOTOSYS	0.865	0.836	0.653	4.2e-143
TAIR|locus:2156151	402	APO3 "ACCUMULATION OF PHOTOSYS	0.737	0.815	0.439	7.1e-77
TAIR|locus:2093069	337	APO4 "AT3G21740" [Arabidopsis	0.307	0.406	0.463	6.9e-53

TAIR|locus:2010906 APO1 "ACCUMULATION OF PHOTOSYSTEM ONE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 253/387 (65%), Positives = 315/387 (81%)

Query:    61 TFLCASRRPLQDLSFKKQKAYPQNVDLPTLXXXXXXXXXXXXXXXXRQVAKKDKRLAEMG 120
             T  C +++  +  SFKK+    QNVDLP +                ++ A+KDK+LA+MG
Sbjct:    74 TVFCFNQKHREQTSFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKLAQMG 133

Query:   121 IEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGH 180
             IEK L+PPKNG+LVP+L+ VA +VID WKLLIKGLAQLLHV+PV+ CSEC  VHVA+ GH
Sbjct:   134 IEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGH 193

Query:   181 HIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVE 240
             +I++C G T ++RR  HSWV+G+IND+L+PVESYH+YDPFGRRIKHE+RF+Y+RIPA+VE
Sbjct:   194 NIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVE 253

Query:   241 LCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEP-RPWRSRG-SSALSDLDTDGAC 298
             LCIQAGV+IPEYP RRRT+PIR +GK+VIDRGG+ +EP +P  S   SS L++LDT G  
Sbjct:   254 LCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVF 313

Query:   299 GRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCG 358
              R PPP+  D+P+IAQETMDAYE VR GVTKLMRK++VKACGYC EVH+GPWGH+VKLCG
Sbjct:   314 ERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCG 373

Query:   359 AFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAG 418
              FKHQWRDGKHGWQDA+VDEVFPPNYVWHV+D KG PL   L+R+YGKAPA+VE+CM +G
Sbjct:   374 EFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSG 433

Query:   419 AQVPEQYKPTMRLDIIVPESEEVDLVA 445
             A+VP++YK  MRLDIIVP+S+E D+VA
Sbjct:   434 ARVPQRYKAMMRLDIIVPDSQEADMVA 460

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0015979 "photosynthesis" evidence=IMP

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=IMP

TAIR|locus:2156151 APO3 "ACCUMULATION OF PHOTOSYSTEM ONE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 150/341 (43%), Positives = 227/341 (66%)

Query:   110 AKKDKRLAEMGIEKPLE-PPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCS 168
             AK++K+L ++   + LE PP NG+LVP+L+ VA+ V     +L+ GL++++H +PV+ C 
Sbjct:    70 AKEEKQLRKLQPCRVLEDPPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCR 129

Query:   169 ECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGR-RIKHE 227
              C+EVH+   GH I+ C G  +  R + H W RG ++D++L  + +HLYD   + R+ H+
Sbjct:   130 LCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHD 189

Query:   228 SRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSR--G 285
              RF   +I AV+ELCIQAGVD+ ++PS+RR+KP+ ++  +++D   F E+     S    
Sbjct:   190 ERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVD---F-EDVNDGNSELAV 245

Query:   286 SSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEV 345
             +S  + +  D  C +    SL +   ++ ETM+++  +  GV KLM +Y V  CGYCPE+
Sbjct:   246 TSTTTLIQEDDRC-KEEKKSLKE---LSFETMESWFEMVLGVRKLMERYRVWTCGYCPEI 301

Query:   346 HIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPK-GPPLRSALKRYY 404
              +GP GH V++C A KHQ RDG H WQ+A +D+V  P YVWHV+DP  G  L ++LKR+Y
Sbjct:   302 QVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFY 361

Query:   405 GKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
             GKAPAV+E+C+Q GA VP+QY   MRLD++ P+ +EVDLVA
Sbjct:   362 GKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDLVA 402

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093069 APO4 "AT3G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 64/138 (46%), Positives = 83/138 (60%)

Query:   114 KRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEV 173
             ++L  M I K +E       V +++ VA E++ A K LI  +A LL V PV  C  CSEV
Sbjct:    36 RKLRPM-ILKRIENRAKDYPVKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEV 94

Query:   174 HVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYD 233
              V   GH I+ C+          H WV GSINDIL+PVESYHL++     I+H+ RFDYD
Sbjct:    95 FVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYD 154

Query:   234 RIPAVVELCIQAGVDIPE 251
             R+PA++ELC QAG   PE
Sbjct:   155 RVPAILELCCQAGAIHPE 172

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIR4	APO1_ARATH	No assigned EC number	0.6777	0.8741	0.8922	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018970001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (403 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
PLN00111	399	PLN00111, PLN00111, accumulation of photosystem on	0.0
pfam05634	207	pfam05634, APO_RNA-bind, APO RNA-binding	6e-92
pfam05634	207	pfam05634, APO_RNA-bind, APO RNA-binding	5e-25

>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional

 Score =  628 bits (1623), Expect = 0.0
 Identities = 218/401 (54%), Positives = 286/401 (71%), Gaps = 2/401 (0%)

Query: 45  KFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIE 104
                     +   S +F C+S+   + LS   +  YPQN DLP    K++KKPYP P++
Sbjct: 1   LLPSSIPSLRKLKLSLSFRCSSQLHRRKLSSVIRSEYPQNADLPRPYSKREKKPYPRPMK 60

Query: 105 KIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPV 164
            +R+ A++ K+L ++  E+PL+PPKNG+LV  L+ VA+EV  A KLLI G+++LL V+PV
Sbjct: 61  LLRREAREKKKLRKLQPERPLDPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPV 120

Query: 165 YGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRI 224
           + C  CSEVHV   GH I+ C+G  +  R   H W+ GS+ D+L+PVESYHLYD FG+RI
Sbjct: 121 HACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRI 180

Query: 225 KHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSR 284
           KH+ RFD  RIPA+VELCIQAGVDIPEYP++RRTKPI  +G +++D     EEP P    
Sbjct: 181 KHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEG 240

Query: 285 GSSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPE 344
            SS L     D       P S  ++  +A+ET++A+E VRSGV KLMRKY VK CGYCPE
Sbjct: 241 PSSPLLTELDD--SEIEAPSSEEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPE 298

Query: 345 VHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYY 404
           VH+GP GH V+LCGAFKHQ RDG+HGWQ+A VD++ PPNYVWHV+D  GPPL + L+RYY
Sbjct: 299 VHVGPSGHKVRLCGAFKHQQRDGQHGWQEATVDDLVPPNYVWHVRDQDGPPLVNELRRYY 358

Query: 405 GKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLVA 445
           GKAPAVVE+C+QAGA VP++YK  MRLD+++P+S+E DLVA
Sbjct: 359 GKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLVA 399

Length = 399

>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding

 Score =  276 bits (708), Expect = 6e-92
 Identities = 112/208 (53%), Positives = 158/208 (75%), Gaps = 1/208 (0%)

Query: 63  LCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIE 122
           LC+ +      S ++ +  PQN DLP   PK++KKPYP+P++++ + AK++K+L +M   
Sbjct: 1   LCSRQELRGSTSVQRNE-SPQNADLPKPYPKREKKPYPMPLKRLIRRAKEEKKLRKMKPC 59

Query: 123 KPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHI 182
           + L PPKNG+LV +L+ VA EV +A +LLIKGL++LL V+PV+ C  C EVHV   GH I
Sbjct: 60  RVLYPPKNGLLVKELVPVAEEVHNARELLIKGLSRLLKVVPVHRCKFCPEVHVGKVGHEI 119

Query: 183 QNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELC 242
           + C+G  +++R   H WV G+IND+L+PVESYHLYD FG+RIKH+ RFD  R+PAV+ELC
Sbjct: 120 RTCKGPGSSQRNGLHEWVPGTINDVLVPVESYHLYDRFGKRIKHDERFDVPRVPAVLELC 179

Query: 243 IQAGVDIPEYPSRRRTKPIRTLGKKVID 270
           IQAGVDIPEYP++RRTKPI ++GK+++D
Sbjct: 180 IQAGVDIPEYPAKRRTKPIYSIGKEIVD 207

This domain contains conserved cysteine and histidine residues. It resembles zinc fingers, and binds to zinc. This domain functions as an RNA-binding domain. Length = 207

>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding

 Score =  101 bits (254), Expect = 5e-25
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 18/200 (9%)

Query: 247 VDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPSL 306
            D+P+   +R  KP     K++I R    EE +            L     C  L PP  
Sbjct: 22  ADLPKPYPKREKKPYPMPLKRLIRRAK--EEKK------------LRKMKPCRVLYPPKN 67

Query: 307 AD-VPRI---AQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKH 362
              V  +   A+E  +A E++  G+++L++   V  C +CPEVH+G  GH ++ C     
Sbjct: 68  GLLVKELVPVAEEVHNARELLIKGLSRLLKVVPVHRCKFCPEVHVGKVGHEIRTCKGPGS 127

Query: 363 QWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVP 422
             R+G H W    +++V  P   +H+ D  G  ++   +    + PAV+E+C+QAG  +P
Sbjct: 128 SQRNGLHEWVPGTINDVLVPVESYHLYDRFGKRIKHDERFDVPRVPAVLELCIQAGVDIP 187

Query: 423 EQYKPTMRLDIIVPESEEVD 442
           E         I     E VD
Sbjct: 188 EYPAKRRTKPIYSIGKEIVD 207

This domain contains conserved cysteine and histidine residues. It resembles zinc fingers, and binds to zinc. This domain functions as an RNA-binding domain. Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
PLN00111	399	accumulation of photosystem one; Provisional	100.0
PF05634	204	APO_RNA-bind: APO RNA-binding; InterPro: IPR008512	100.0
PF05634	204	APO_RNA-bind: APO RNA-binding; InterPro: IPR008512	100.0
PLN00111	399	accumulation of photosystem one; Provisional	100.0

>PLN00111 accumulation of photosystem one; Provisional

Probab=100.00  E-value=1.7e-154  Score=1156.33  Aligned_cols=397  Identities=55%  Similarity=0.992  Sum_probs=376.5

Q ss_pred             hcccccccccccccceeEeeecCCcccccccccccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCC
Q 013340           46 FRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPL  125 (445)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlP~~~~k~~rKP~~~P~k~lir~ar~e~k~~~~~p~~~l  125 (445)
                      +.+++.......++.++.|.++.......+...+++|||+|+|++++|++||||+|||++|+|+||+++++++++|+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~~~~~~~~~~~~l   81 (399)
T PLN00111          2 LPSSIPSLRKLKLSLSFRCSSQLHRRKLSSVIRSEYPQNADLPRPYSKREKKPYPRPMKLLRREAREKKKLRKLQPERPL   81 (399)
T ss_pred             ccccccccccceeeeeeeecccccccccceeecccCCcccccCCCCCchhcCCCCccHHHHHHHHHHHhhhhhcCCCccC
Confidence            34555667777788888888888778888889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcceEeeeccCCCCCceecCCCCccccccCCccccccccccccccccC
Q 013340          126 EPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSIN  205 (445)
Q Consensus       126 epP~NGLLv~~LipvA~evl~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~v~  205 (445)
                      +||+|||||++|++|||+||+||++|++||+|||++|||++|+||+|||||++||+||||+|++|++|||+|+|++|+||
T Consensus        82 ~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~  161 (399)
T PLN00111         82 DPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVE  161 (399)
T ss_pred             CCCccCccccccHHHHHHHHHHHHHHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCeeeeeeCCCCCcccccccccCCCcchhhhHHHHhCCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCC
Q 013340          206 DILLPVESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRG  285 (445)
Q Consensus       206 Dvl~P~e~~Hl~d~~g~~i~he~Rf~y~riPAVVELCiQAGvdiPeyp~krr~kPi~~i~k~i~d~~~~~~~~~~~~~~~  285 (445)
                      |||+|+|+|||+|++|++|.||+||+||||||||||||||||||||||++||++|+++|+++++|+++++++++++++..
T Consensus       162 Dvl~P~e~~Hl~D~~g~~i~h~~Rf~y~riPAVvELCiQAGa~vPeyp~~Rr~~p~~~i~~~~~~~~~~~~~~~~~~~~~  241 (399)
T PLN00111        162 DVLVPVESYHLYDRFGKRIKHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEGP  241 (399)
T ss_pred             ceeccceeeEeccCCCcccccccccccCcccHHHHHHHHcCCCCCccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999743


Q ss_pred             -CCCCccCccCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccc
Q 013340          286 -SSALSDLDTDGACGRLPPPSLADVPRIAQETMDAYEVVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQW  364 (445)
Q Consensus       286 -~~~~~~l~~~~~~~~~~pp~~~el~~vA~e~l~Aw~~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~  364 (445)
                       ..++.+.+....   ..+.+.+||++||+|||+||+.|++||++||++|+|++|||||||||||+||++|+|+|||||+
T Consensus       242 ~~~~~~e~~~~~~---~~~~~~~~l~~vA~etl~Aw~~~~~Gv~~Lm~~y~V~~C~yC~EVhVGp~GHk~r~C~~~k~q~  318 (399)
T PLN00111        242 SSPLLTELDDSEI---EAPSSEEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRLCGAFKHQQ  318 (399)
T ss_pred             ccccccccccccc---cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCceeECCCCceeeecCCchhcc
Confidence             344444433322   3334678999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccceecccCccCCCCeeeeccCCCCCccccchhhhcCCCchhhhhHHHcCCCCCCCCcccccccccCCCCcccccc
Q 013340          365 RDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIVPESEEVDLV  444 (445)
Q Consensus       365 R~g~H~W~~a~vdDllpP~~vwHl~d~~g~~l~~e~R~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~~~p~~~e~~~v  444 (445)
                      |||+|+||+|+|||||||+||||++|++|++|+||+||||||||||||||+||||+||++|+||||+|++||++||++||
T Consensus       319 r~g~H~Wq~a~vdDlvpP~~vwH~~d~~~~~l~~e~r~~Yg~aPAVVELC~QAGA~vP~~Y~~mMRldv~~P~~~E~~lv  398 (399)
T PLN00111        319 RDGQHGWQEATVDDLVPPNYVWHVRDQDGPPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLV  398 (399)
T ss_pred             cCCcccccccccccccCCceeEecCCCCCCcccccchhhcCccchHHHHHhhhCCCCChhhhhhhhccccCCCcchhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 013340          445 A  445 (445)
Q Consensus       445 a  445 (445)
                      |
T Consensus       399 a  399 (399)
T PLN00111        399 A  399 (399)
T ss_pred             C
Confidence            7

>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins

Probab=100.00  E-value=2.9e-87  Score=625.98  Aligned_cols=194  Identities=51%  Similarity=0.968  Sum_probs=191.4

Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 013340           77 KQKAYPQNVDLPTLPPKKKKKPYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLA  156 (445)
Q Consensus        77 ~~~~~~~~~DlP~~~~k~~rKP~~~P~k~lir~ar~e~k~~~~~p~~~lepP~NGLLv~~LipvA~evl~A~~~L~~Gv~  156 (445)
                      ..+++|||+|||++++|+||||||+|||+|+++||+|+++++++|+++|+||+|||||++|++||++||+||++|++||+
T Consensus        11 ~~~~~~~~~d~P~~~~k~ekKp~p~p~k~l~~~are~~k~~~~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~   90 (204)
T PF05634_consen   11 IRNESPQNADLPRPLPKSEKKPYPTPIKELIRRAREERKARQGQPERPLYPPKNGLLVKELVPVAYEVLEAWETLISGVK   90 (204)
T ss_pred             hcccCCccccCCCcCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCCCCCCccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcceEeeeccCCCCCceecCCCCccccccCCccccccccccccccccCccccCCeeeeeeCCCCCcccccccccCCCcc
Q 013340          157 QLLHVIPVYGCSECSEVHVAHSGHHIQNCQGATAAKRRSFHSWVRGSINDILLPVESYHLYDPFGRRIKHESRFDYDRIP  236 (445)
Q Consensus       157 kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~v~Dvl~P~e~~Hl~d~~g~~i~he~Rf~y~riP  236 (445)
                      |||++|||++||||||||||++||+||||+|++|++|||+|+|++|+|||||+|+|+|||+|++|++|.||+||+|||||
T Consensus        91 kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R~~y~riP  170 (204)
T PF05634_consen   91 KLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKHEERFYYGRIP  170 (204)
T ss_pred             HHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCccccccccccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhCCCCCCCCCCCCCCCeeeccceeee
Q 013340          237 AVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVID  270 (445)
Q Consensus       237 AVVELCiQAGvdiPeyp~krr~kPi~~i~k~i~d  270 (445)
                      ||||||||||||+|+||++||+||+++|+|+++|
T Consensus       171 AVVELCiQAGa~vPeypt~rR~kPv~~i~~~~vd  204 (204)
T PF05634_consen  171 AVVELCIQAGADVPEYPTKRRTKPVYRIGGRIVD  204 (204)
T ss_pred             hHHHHHHhhCCcCCcccccccccceEeccceecC
Confidence            9999999999999999999999999999999885

>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins

Probab=100.00  E-value=1.9e-66  Score=486.02  Aligned_cols=175  Identities=45%  Similarity=0.831  Sum_probs=165.1

Q ss_pred             CCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCCCCCCccCccCCCCCCCCCCC----CCChhHHHHHHHHHHH
Q 013340          246 GVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPS----LADVPRIAQETMDAYE  321 (445)
Q Consensus       246 GvdiPeyp~krr~kPi~~i~k~i~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pp~----~~el~~vA~e~l~Aw~  321 (445)
                      -+|+|...+|+++||+++|+++|+.++++              .+++++.+.++.+.||+    +++|++||++||+||+
T Consensus        18 ~~d~P~~~~k~ekKp~p~p~k~l~~~are--------------~~k~~~~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~   83 (204)
T PF05634_consen   18 NADLPRPLPKSEKKPYPTPIKELIRRARE--------------ERKARQGQPERPLYPPKNGLLVKELVPVAYEVLEAWE   83 (204)
T ss_pred             cccCCCcCCccccCCCCccHHHHHHHHHH--------------HHHHhhcCCCCCCCCCccCccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999976664              34577788888898988    8999999999999999


Q ss_pred             HHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccccCCcccceecccCccCCCCeeeeccCCCCCccccchh
Q 013340          322 VVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK  401 (445)
Q Consensus       322 ~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~R~g~H~W~~a~vdDllpP~~vwHl~d~~g~~l~~e~R  401 (445)
                      .|++||+|||++|||++||||||||||++||++|||+||||++|||+|+||+|+|||||||+|||||+|++|++|.||+|
T Consensus        84 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R  163 (204)
T PF05634_consen   84 TLISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKHEER  163 (204)
T ss_pred             HHHHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhhhhHHHcCCCCCCCCcccccccccC
Q 013340          402 RYYGKAPAVVEVCMQAGAQVPEQYKPTMRLDIIV  435 (445)
Q Consensus       402 ~~ygr~PAVVELCiQAGa~vP~~y~~~mr~d~~~  435 (445)
                      |||||||||||||+||||++|+ |.+|||..-++
T Consensus       164 ~~y~riPAVVELCiQAGa~vPe-ypt~rR~kPv~  196 (204)
T PF05634_consen  164 FYYGRIPAVVELCIQAGADVPE-YPTKRRTKPVY  196 (204)
T ss_pred             cccCccchHHHHHHhhCCcCCc-ccccccccceE
Confidence            9999999999999999999995 99998876554

>PLN00111 accumulation of photosystem one; Provisional

Probab=100.00  E-value=4.3e-58  Score=461.34  Aligned_cols=165  Identities=30%  Similarity=0.515  Sum_probs=157.4

Q ss_pred             CCCCCCCCCCCCCCCeeeccceeeecCCcccCCCCccCCCCCCCccCccCCCCCCCCCCC----CCChhHHHHHHHHHHH
Q 013340          246 GVDIPEYPSRRRTKPIRTLGKKVIDRGGFVEEPRPWRSRGSSALSDLDTDGACGRLPPPS----LADVPRIAQETMDAYE  321 (445)
Q Consensus       246 GvdiPeyp~krr~kPi~~i~k~i~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pp~----~~el~~vA~e~l~Aw~  321 (445)
                      -+|+|.+.+|+.+|||++|++.++..+++.              +.++.++.++.++||+    +.+|++||++||+||+
T Consensus        40 ~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~--------------~~~~~~~~~~~l~pP~NGllV~~LvpvA~ev~~A~~  105 (399)
T PLN00111         40 NADLPRPYSKREKKPYPRPMKLLRREAREK--------------KKLRKLQPERPLDPPKNGLLVKRLVPVAHEVYKARK  105 (399)
T ss_pred             ccccCCCCCchhcCCCCccHHHHHHHHHHH--------------hhhhhcCCCccCCCCccCccccccHHHHHHHHHHHH
Confidence            589999999999999999999999666643              3467778888998888    8999999999999999


Q ss_pred             HHHHHHHhhhceeeecccCCCCCeeecCCCCcccccCCCcccccCCcccceecccCccCCCCeeeeccCCCCCccccchh
Q 013340          322 VVRSGVTKLMRKYSVKACGYCPEVHIGPWGHNVKLCGAFKHQWRDGKHGWQDAVVDEVFPPNYVWHVQDPKGPPLRSALK  401 (445)
Q Consensus       322 ~l~~Gv~kLm~~ypV~~C~yC~EVHVG~~GHkir~C~~~k~q~R~g~H~W~~a~vdDllpP~~vwHl~d~~g~~l~~e~R  401 (445)
                      .|++||+|||++|||++|+||||||||++||+||||+|+|||+|||+|+|++|+|||||+|+|+|||+|++|++|.|++|
T Consensus       106 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g~~i~h~~R  185 (399)
T PLN00111        106 LLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRIKHDER  185 (399)
T ss_pred             HHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCCcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhhhhHHHcCCCCCCC
Q 013340          402 RYYGKAPAVVEVCMQAGAQVPEQ  424 (445)
Q Consensus       402 ~~ygr~PAVVELCiQAGa~vP~~  424 (445)
                      |||||||||||||+||||++|+.
T Consensus       186 f~y~riPAVvELCiQAGa~vPey  208 (399)
T PLN00111        186 FDVPRIPAIVELCIQAGVDIPEY  208 (399)
T ss_pred             cccCcccHHHHHHHHcCCCCCcc
Confidence            99999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 66/438 (15%), Positives = 123/438 (28%), Gaps = 100/438 (22%)

Query: 38  SPHNLLLKFRCEHLQNAESMSSRTFLCASRRPLQDLSFKKQKAYPQNVDLPTLPPKKKKK 97
            P ++L K   +H+  ++   S T      R    L  K+++   + V+      +  + 
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEEMVQKFVE------EVLRI 89

Query: 98  PYPIPIEKIRQVAKKDKRLAEMGIEKPLEPPKNGILVPDLIHVAYEVIDAWKLLIKGLAQ 157
            Y   +  I+   ++   +  M IE+  +   N   V    +V+      +  L + L +
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRL--QPYLKLRQALLE 146

Query: 158 LLHV--IPVYGCSECSEVHVAHSGHH---IQNCQGATAAKRRSFH-SWVRGSINDILLPV 211
           L     + + G        V  SG     +  C       +  F   W+           
Sbjct: 147 LRPAKNVLIDG--------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---------- 188

Query: 212 ESYHLYDPFGRRIKHESRFDYDRIPAVVELCIQAGVDIPEYPSRRRTKPIRTLGKKVIDR 271
                          E       +  + +L  Q   +            +R    +   R
Sbjct: 189 --------LKNCNSPE-----TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 272 GGFVEEPRPWRSRGSSALSDLDT----------DGACGRL---PPPSLADVPRIAQETMD 318
                +P        + L  L            + +C  L       + D    A  T  
Sbjct: 236 RLLKSKPYE------NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 319 AYEVVRSGVTK-----LMRKY-SVKACGYCPEVH-IGPWGHNVKLCGAFKHQWRDGKHGW 371
           + +     +T      L+ KY   +      EV    P    + +        RDG   W
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESI---RDGLATW 344

Query: 372 QDAVVDEVFPPNYVWHVQDPKGPPLRSALKRYYGK-APAVVEVCMQAGAQVPEQYK-PTM 429
                      N+  HV   K   L + ++       PA         +  P     PT+
Sbjct: 345 D----------NWK-HVNCDK---LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 430 RLDII--VPESEEVDLVA 445
            L +I       +V +V 
Sbjct: 391 LLSLIWFDVIKSDVMVVV 408

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 50/378 (13%), Positives = 97/378 (25%), Gaps = 134/378 (35%)

Query: 1   MLQTVPPVTSSLWNSNPSQRVGQKGPMEFKSPQLSSI-----SPHNLL------------ 43
           MLQ +       W S        K  +     +L  +       + LL            
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 44  -LKFRCEHL------QNAESMSSRTFLCASRRPLQDLS--FKKQKAYPQ-----NVDLPT 89
                C+ L      Q  + +S+ T    +   L   S      +         +     
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 90  LPPKKKK-------------KPYPIPIEKIRQV-AKKDKRLAEMGIEKPLEPPKN----- 130
           LP +                +      +  + V   K   + E  +   LEP +      
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFD 376

Query: 131 --GILVPDLIHVAYEVIDA-W-------------KLLIKGLA--------------QL-- 158
              +  P   H+   ++   W             KL    L                L  
Sbjct: 377 RLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 159 ---------LH--VIPVYGCSECSEVH-----------VAHSGHHIQNCQGA-------- 188
                    LH  ++  Y   +  +              +H GHH++N +          
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 189 -------TAAK-RRSFHSW-VRGSINDILLPVESYHLYDPFGRRI-KHESRFDYDRIPAV 238
                     K R    +W   GSI + L  ++ Y  Y      I  ++ +++   + A+
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY------ICDNDPKYE-RLVNAI 548

Query: 239 VELCIQAGVDIPEYPSRR 256
           ++   +   ++       
Sbjct: 549 LDFLPKIEENLICSKYTD 566

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00