Citrus Sinensis ID: 013350

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----

MGCTTGYWSCFESCCFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKEEEEEEEEEQAKMKEAVRSRKDVALEEMTDPTAKEAQEQAKAKTLEKHEQLCELSRALAVLASASVRIKNSYRSLVNCHVSCFICVGIC

ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

ccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHEEEEEHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHEccccccHHHHHHHHHHcccHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHEEEEEEEccc

mgcttgywscfesccfyeqgrlgvklrHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVngkglsrreRQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKlfpnmlpstfqDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQnsrggdikKTAEDLDEFMNKVrtgagvsndEILAFAKLFNdeltldnisrprLVNMCKymgispfgtDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDlslnhsvpssLLILSRAFsvsgkvrpeEAVQATLsslpdevvdtvgvtalpsedsiSERRRKLEFLEMQEELIKEEEEEEEEEQAKMKEAVRSRKDVALEEMTDPTAKEAQEQAKAKTLEKHEQLCELSRALAVLASASVRIKNSYRSLVNCHVSCFICVGIC

mgcttgywscFESCCFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKlvngkglsrrerqqltrttadifrlvPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKevqnsrggdikkTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQatlsslpdevvdtvgvtalpsedsiserrRKLEFLEMQEELikeeeeeeeeeqakmkeavrsrKDVALEEMTDPTAKEAQEQAKAKTLEKHEQLCELSRALAVLASASVRIKNSYRSLVNCHVSCFICVGIC

MGCTTGYWSCFESCCFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSISERRRKLeflemqeelikeeeeeeeeeqakmkeaVRSRKDVALEEMTDPtakeaqeqakaktlekHEQLCElsralavlasasvrIKNSYRSLVNCHVSCFICVGIC

**CTTGYWSCFESCCFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQ*******ALKRRLIARIEYAKFLQDTV************************FMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIK******************LRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVS***********************V*******************************************************************************LCELSRALAVLASASVRIKNSYRSLVNCHVSCFICVGI*

**************************RHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQ********************TAEDLDEFMNKV*****VSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGK***********SSLPDEVVDT***********************************************************************************************************CHVSCFICVGIC

MGCTTGYWSCFESCCFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEEL********************SRKDVALEEM******************KHEQLCELSRALAVLASASVRIKNSYRSLVNCHVSCFICVGIC

**CTTGYWSCFESCCFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSR***IKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKEEEEEEEEE************************************EKHEQLCELSRALAVLASASVRIKNSYRSLVNCHVSCFICVGIC

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MGCTTGYWSCFESCCFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSISERRRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDVALEEMTDPTAKEAQEQAKAKTLEKHEQLCELSRALAVLASASVRIKNSYRSLVNCHVSCFICVGIC

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		444	2.2.26 [Sep-21-2011]
Q5ZK33		752	LETM1 and EF-hand domain-	yes	no	0.731	0.432	0.486	4e-84
Q0VCA3		732	LETM1 and EF-hand domain-	yes	no	0.745	0.452	0.461	6e-79
Q1LY46		757	LETM1 and EF-hand domain-	yes	no	0.768	0.450	0.451	5e-78
Q0VA06		760	LETM1 and EF-hand domain-	yes	no	0.806	0.471	0.450	3e-75
Q5XIN6		739	LETM1 and EF-hand domain-	yes	no	0.788	0.473	0.456	1e-74
Q9Z2I0		738	LETM1 and EF-hand domain-	yes	no	0.754	0.453	0.458	2e-73
O95202		739	LETM1 and EF-hand domain-	yes	no	0.725	0.435	0.469	2e-72
P91927		1013	LETM1 and EF-hand domain-	yes	no	0.630	0.276	0.465	9e-69
Q7TNU7		480	LETM1 domain-containing p	no	no	0.677	0.627	0.439	1e-60
Q08179		573	Mitochondrial distributio	yes	no	0.75	0.581	0.368	2e-59

>sp\|Q5ZK33\|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1	Back alignment and function desciption

 Score =  312 bits (799), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 161/331 (48%), Positives = 227/331 (68%), Gaps = 6/331 (1%)

Query: 37  MQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPF 96
           ++HY+ G +LLW D +I++R+L ++++G  LSRRER+Q  R  AD+FRLVP  VF++VPF
Sbjct: 158 LKHYYHGFRLLWIDTKIAARMLWRILHGNTLSRRERRQFLRICADLFRLVPFLVFLVVPF 217

Query: 97  MEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRG 156
           MEFLLPV LKLFPNMLPSTF+ K ++EE LK++L  ++E AKFLQDT++EMA + + ++G
Sbjct: 218 MEFLLPVALKLFPNMLPSTFETKSKKEERLKKQLRVKLELAKFLQDTIEEMALKNKAAKG 277

Query: 157 GDIKKTAEDLDEFMNKVR-TGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGIS 215
              K    D   F  K+R TG   SN+EIL F+KLF DELTLDN++RP+LV +CK + + 
Sbjct: 278 NVTK----DFSTFFQKIRETGERPSNEEILRFSKLFEDELTLDNLTRPQLVALCKLLELQ 333

Query: 216 PFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEE-MRQ 274
             GT+ +LR+ L  RL+ IK DDKMI  EGV+SL+  EL+ ACR RG+  L   EE +R+
Sbjct: 334 SIGTNNFLRFQLTMRLRTIKADDKMIAEEGVDSLTVKELQAACRARGMRALGVTEERLRE 393

Query: 275 QLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSE 334
           QL+ WLDL LN  +P+SLLILSRA  +   + P + ++ TL +LP+ V     V     E
Sbjct: 394 QLKQWLDLHLNQEIPTSLLILSRAMYLPDTLSPADQLKTTLQTLPESVAKEAQVKVAEVE 453

Query: 335 DSISERRRKLEFLEMQEELIKEEEEEEEEEQ 365
               + + +LE    +E  I++E EE+E E+
Sbjct: 454 GEKVDNKARLEATLQEEAAIRKENEEKEMER 484

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain.
Gallus gallus (taxid: 9031)

>sp\|Q0VCA3\|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1	Back alignment and function description

>sp\|Q1LY46\|LETM1_DANRE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Danio rerio GN=letm1 PE=3 SV=2	Back alignment and function description

>sp\|Q0VA06\|LETM1_XENTR LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Xenopus tropicalis GN=letm1 PE=2 SV=1	Back alignment and function description

>sp\|Q5XIN6\|LETM1_RAT LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1	Back alignment and function description

>sp\|Q9Z2I0\|LETM1_MOUSE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Mus musculus GN=Letm1 PE=2 SV=1	Back alignment and function description

>sp\|O95202\|LETM1_HUMAN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1	Back alignment and function description

>sp\|P91927\|A60DA_DROME LETM1 and EF-hand domain-containing protein anon-60Da, mitochondrial OS=Drosophila melanogaster GN=Letm1 PE=2 SV=2	Back alignment and function description

>sp\|Q7TNU7\|LETM2_MOUSE LETM1 domain-containing protein LETM2, mitochondrial OS=Mus musculus GN=Letm2 PE=2 SV=1	Back alignment and function description

>sp\|Q08179\|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		444
224109172		658	predicted protein [Populus trichocarpa]	0.891	0.601	0.919	0.0
224101261		687	predicted protein [Populus trichocarpa]	0.891	0.576	0.909	0.0
255547432		758	leucine zipper-ef-hand containing transm	0.891	0.522	0.916	0.0
449477676		756	PREDICTED: LETM1 and EF-hand domain-cont	0.889	0.522	0.886	0.0
225434179		764	PREDICTED: LETM1 and EF-hand domain-cont	0.932	0.541	0.848	0.0
297841081		747	calcium-binding EF hand family protein [	0.891	0.530	0.881	0.0
42562974		736	LETM1-like protein [Arabidopsis thaliana	0.891	0.538	0.878	0.0
449470263		746	PREDICTED: LETM1 and EF-hand domain-cont	0.867	0.516	0.851	0.0
356566963		761	PREDICTED: LETM1 and EF-hand domain-cont	0.934	0.545	0.826	0.0
224092862		750	predicted protein [Populus trichocarpa]	0.932	0.552	0.824	0.0

>gi\|224109172\|ref\|XP_002315110.1\| predicted protein [Populus trichocarpa] gi\|222864150\|gb\|EEF01281.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/396 (91%), Positives = 383/396 (96%)

Query: 25  KLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFR 84
           K+R+WKDE KSTMQHYWLGTKLLWAD+RISSRLL+KL +GKGLSRRERQQLTRTTADIFR
Sbjct: 108 KIRYWKDELKSTMQHYWLGTKLLWADVRISSRLLVKLASGKGLSRRERQQLTRTTADIFR 167

Query: 85  LVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTV 144
           LVP AVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKM+E+EALKR+L ARIEYAKFLQDTV
Sbjct: 168 LVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRKLNARIEYAKFLQDTV 227

Query: 145 KEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPR 204
           KEMAKEVQNSR G+ K+TA DLDEFMNKVRTG+ VSN+EIL FAKLFNDELTLDNISRPR
Sbjct: 228 KEMAKEVQNSRSGEAKQTAGDLDEFMNKVRTGSRVSNEEILGFAKLFNDELTLDNISRPR 287

Query: 205 LVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLL 264
           LV+MCKYMGISP+GTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLL
Sbjct: 288 LVSMCKYMGISPYGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLL 347

Query: 265 GLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVD 324
           GLLSV+EMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVD
Sbjct: 348 GLLSVDEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVD 407

Query: 325 TVGVTALPSEDSISERRRKLEFLEMQEELIKEEEEEEEEEQAKMKEAVRSRKDVALEEMT 384
           TVGVTALPSED +SERRRKLEFLEMQEELIKEEEEEEEEEQA+MKE+V S+KDVALEEMT
Sbjct: 408 TVGVTALPSEDLVSERRRKLEFLEMQEELIKEEEEEEEEEQARMKESVSSQKDVALEEMT 467

Query: 385 DPTAKEAQEQAKAKTLEKHEQLCELSRALAVLASAS 420
            PTA EAQEQAKAKTLEKHEQLCELSRALAVLASAS
Sbjct: 468 IPTAGEAQEQAKAKTLEKHEQLCELSRALAVLASAS 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224101261\|ref\|XP_002312206.1\| predicted protein [Populus trichocarpa] gi\|222852026\|gb\|EEE89573.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255547432\|ref\|XP_002514773.1\| leucine zipper-ef-hand containing transmembrane protein, putative [Ricinus communis] gi\|223545824\|gb\|EEF47327.1\| leucine zipper-ef-hand containing transmembrane protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449477676\|ref\|XP_004155090.1\| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225434179\|ref\|XP_002275474.1\| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Vitis vinifera] gi\|296084337\|emb\|CBI24725.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297841081\|ref\|XP_002888422.1\| calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gi\|297334263\|gb\|EFH64681.1\| calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42562974\|ref\|NP_176732.2\| LETM1-like protein [Arabidopsis thaliana] gi\|332196272\|gb\|AEE34393.1\| LETM1-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449470263\|ref\|XP_004152837.1\| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356566963\|ref\|XP_003551694.1\| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi\|224092862\|ref\|XP_002309727.1\| predicted protein [Populus trichocarpa] gi\|222852630\|gb\|EEE90177.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		444
TAIR\|locus:2034136		736	LETM2 "leucine zipper-EF-hand-	0.864	0.521	0.776	5.2e-152
TAIR\|locus:2080502		760	LETM1 "leucine zipper-EF-hand-	0.864	0.505	0.708	2.6e-141
UNIPROTKB\|Q5ZK33		752	LETM1 "LETM1 and EF-hand domai	0.684	0.404	0.490	9.3e-75
RGD\|1359678		739	Letm1 "leucine zipper-EF-hand	0.684	0.411	0.477	5.9e-73
MGI\|MGI:1932557		738	Letm1 "leucine zipper-EF-hand	0.684	0.411	0.474	7.5e-73
UNIPROTKB\|O95202		739	LETM1 "LETM1 and EF-hand domai	0.684	0.411	0.474	2.5e-72
UNIPROTKB\|E2RHA5		741	LETM1 "Uncharacterized protein	0.684	0.410	0.470	1.4e-71
UNIPROTKB\|F1S9F3		721	LETM1 "Uncharacterized protein	0.684	0.421	0.470	1.4e-71
UNIPROTKB\|K7GSE0		782	LETM1 "Uncharacterized protein	0.684	0.388	0.470	1.4e-71
UNIPROTKB\|F1N3R4		732	LETM1 "LETM1 and EF-hand domai	0.684	0.415	0.467	2.3e-71

TAIR\|locus:2034136 LETM2 "leucine zipper-EF-hand-containing transmembrane protein 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
 Identities = 298/384 (77%), Positives = 320/384 (83%)

Query:    25 KLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFR 84
             KLRHWKDEFKST+QHYWLGTKLLWAD+RIS RLL+KL NGKGLSRRERQQLTRTTADIFR
Sbjct:   179 KLRHWKDEFKSTLQHYWLGTKLLWADVRISVRLLVKLANGKGLSRRERQQLTRTTADIFR 238

Query:    85 LVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTV 144
             LVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKM+EEEALKRRL AR+EYAKFLQDTV
Sbjct:   239 LVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEEEALKRRLNARMEYAKFLQDTV 298

Query:   145 KEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPR 204
             KEMAKEVQ SR G+IKKTAEDLD FM KVR G GVSNDEIL FAKLFNDELTLDNI+R R
Sbjct:   299 KEMAKEVQTSRSGEIKKTAEDLDGFMTKVRRGVGVSNDEILGFAKLFNDELTLDNINRSR 358

Query:   205 LVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLL 264
             LVNMCKYMGISPFGTDAYLRYMLR+RLQEIK DDK+I+AEGVESLSEAELRQACR+RG+L
Sbjct:   359 LVNMCKYMGISPFGTDAYLRYMLRKRLQEIKKDDKLIKAEGVESLSEAELRQACRERGML 418

Query:   265 GLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVD 324
              L SVEEMR+QL DWLDLSLNHSVPSSLLILSR+FS++GK++PEEAVQATLSSLPDEVVD
Sbjct:   419 QLGSVEEMREQLVDWLDLSLNHSVPSSLLILSRSFSMAGKLKPEEAVQATLSSLPDEVVD 478

Query:   325 TVGVTALPSEDSISERRRKLXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSRKDVALEEMT 384
             TVGVTAL SEDS+SER+RKL                             S+KDVAL+EM 
Sbjct:   479 TVGVTALSSEDSVSERKRKLEYLEMQEELIKEEEEEEEEEMAKMKESASSQKDVALDEMM 538

Query:   385 DPXXXXXXXXXXXXXXXXHEQLCE 408
                               HEQLCE
Sbjct:   539 ASTAKDANEQAKAKTLEKHEQLCE 562

GO:0005509 "calcium ion binding" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2080502 LETM1 "leucine zipper-EF-hand-containing transmembrane protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZK33 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1359678 Letm1 "leucine zipper-EF-hand containing transmembrane protein 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1932557 Letm1 "leucine zipper-EF-hand containing transmembrane protein 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|O95202 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RHA5 LETM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S9F3 LETM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|K7GSE0 LETM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N3R4 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.1445.1	hypothetical protein (658 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		444
pfam07766		268	pfam07766, LETM1, LETM1-like protein	1e-129

>gnl\|CDD\|219562 pfam07766, LETM1, LETM1-like protein	Back alignment and domain information

 Score =  372 bits (958), Expect = e-129
 Identities = 153/272 (56%), Positives = 193/272 (70%), Gaps = 5/272 (1%)

Query: 26  LRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRL 85
               K   K  ++HY+ GT+LL+ D++IS++LL K++NG  L+RRER+QL RTT D+FRL
Sbjct: 1   KEKLKQRAKHELRHYYDGTRLLFIDVKISAKLLWKVLNGYELTRREREQLYRTTRDLFRL 60

Query: 86  VPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVK 145
           VP +VFIIVPF E LLP+ LKLFPNMLPSTF    + EE LK+ L  R E AKFLQ+T+K
Sbjct: 61  VPFSVFIIVPFAELLLPIALKLFPNMLPSTFWTATQREEKLKKLLKVRKEVAKFLQETLK 120

Query: 146 EMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRL 205
           EMA   +NS     KK       F  KVR+G   SN+EIL  +KLF DELTLDN+SRP+L
Sbjct: 121 EMALHNKNSISQAEKK----FASFFQKVRSGGEPSNEEILDVSKLFKDELTLDNLSRPQL 176

Query: 206 VNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLG 265
           V +CKY+ + PFGTD  LR+ LR +L+ IK DD+ I  EGV SLS  EL+ ACR RG+  
Sbjct: 177 VALCKYLELHPFGTDNMLRFQLREKLRSIKADDRAIAREGVHSLSPEELQYACRARGMRA 236

Query: 266 L-LSVEEMRQQLRDWLDLSLNHSVPSSLLILS 296
           L LS E +R QL++WLDLSLN  VPS+LL+LS
Sbjct: 237 LGLSEERLRDQLQEWLDLSLNEKVPSTLLLLS 268

Members of this family are inner mitochondrial membrane proteins which play a role in potassium and hydrogen ion exchange. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		444
KOG1043		499	consensus Ca2+-binding transmembrane protein LETM1	100.0
PF07766		268	LETM1: LETM1-like protein; InterPro: IPR011685 Thi	100.0
KOG4263		299	consensus Putative receptor CCR1 [Signal transduct	100.0
PF02037		35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	96.26
smart00513		35	SAP Putative DNA-binding (bihelical) motif predict	95.75
PF02037		35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	85.49
PF07766		268	LETM1: LETM1-like protein; InterPro: IPR011685 Thi	82.9
smart00513		35	SAP Putative DNA-binding (bihelical) motif predict	82.83

>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=4.1e-78  Score=627.37  Aligned_cols=367  Identities=48%  Similarity=0.761  Sum_probs=340.7

Q ss_pred             CCccccccc-cccccchHHHhHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 013350            6 GYWSCFESC-CFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFR   84 (444)
Q Consensus         6 ~~~~~~~~~-~~~~~~~~~~k~~~w~~k~k~~~khY~~G~KlL~~diKis~rL~~k~~~G~~LTRRE~~~L~Rt~~Dl~R   84 (444)
                      .+++...+. +.++...|++....|+++|+++++|||+|||++|.|++++.+++++++.|+.|||||++||+||+.|+||
T Consensus        98 ~~~~~lss~~a~~~~~~~a~~k~s~~~~~~~~lqhy~~gtkll~~e~kisaklLlkll~g~~ltrrE~~qL~rt~~d~fr  177 (499)
T KOG1043|consen   98 KIKELLSSKHAKKTEAFWAKEKPSLKTKFVKGLQHYVDGTKLLGKEIKISAKLLLKLLKGYELTRRERGQLKRTCSDIFR  177 (499)
T ss_pred             hchhhccccchhhccccccccCccHHHHHHHhhHHHhhhhhhhhhhhhhhHHHHHHHHccCeeeHHHhhhHHhhccchhe
Confidence            355566655 7888889998888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHhhhhhhhHHHHHHHHcCCCcchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHH
Q 013350           85 LVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAE  164 (444)
Q Consensus        85 LVPF~vfiiVPF~E~LLPv~lklFPnmLPSTF~~~~q~~e~lkk~l~~R~e~akfLq~tv~e~~~~~~~~~~~~~~~~~~  164 (444)
                      ||||++|++|||+|+++|+++++|||+|||||++..+++++..+++..|.++++|||+|+.+|....+.+..+.+.+.. 
T Consensus       178 LvPfs~flivPf~El~Lp~~lKlfp~~lpstfq~~kk~~~k~~k~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~-  256 (499)
T KOG1043|consen  178 LVPFSKFLIVPFMELLLPIFLKLFPNDLPSTFQESKKEEEKLSKKYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI-  256 (499)
T ss_pred             eccceeeeeeehHHHHhHHHHhhccccchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-
Confidence            9999999999999999999999999999999999998888888888899999999999999999888776666565544 


Q ss_pred             HHHHHHHHhc-CCCCCCHHHHHHHHHhcCCccccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHHhhcHhHHH
Q 013350          165 DLDEFMNKVR-TGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQA  243 (444)
Q Consensus       165 ~f~~f~~kvr-~G~~pS~eeIl~vaklF~d~l~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~~DD~lI~~  243 (444)
                      +|..|+.++| .|..+|+++|+.|+++|+|+.+||||+|+||++||+||+++|||||.+|||+|+++|++|+.||..|.+
T Consensus       257 ~fd~f~~kvr~~~~~~S~eeii~~aklf~de~~LdnLsR~qL~al~k~m~l~~~Gt~~~lr~~lr~kik~ik~dD~~I~~  336 (499)
T KOG1043|consen  257 EFDRFLGKVRFIGLGVSTEEIIAFAKLFSDEITLDNLSRPQLVALCKYMDLNSFGTDKLLRYQLRKKIKEIKKDDKHIAT  336 (499)
T ss_pred             HHHHHHHHhcccCCCccHHHHHHHHHHhccchhhhccCHHHHHHHHHhhcccccCchHHHHHHHHHHHHHhcccccchhh
Confidence            8999999999 589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc-cCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHhcccCCCCChhHHHHHhhhccCCCCCcHHHHHHHHhc-CCh
Q 013350          244 EG-VESLSEAELRQACRDRGLLG-LLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSS-LPD  320 (444)
Q Consensus       244 EG-V~sLs~~EL~~AC~~RGi~~-~~s~e~LR~~L~~WL~Ls~~~~vP~sLLlls~a~~~~~~~~~~~~l~~~ls~-lp~  320 (444)
                      || |++|+..||+.||.+|||++ ++++++|+.+|..|+++|++++||++||+|||+|++.+.....+.+.++|+. +|+
T Consensus       337 eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~~ql~~wldlsl~~~vps~lL~Lsr~~~~~~~~~~~~s~~~~l~~~~~~  416 (499)
T KOG1043|consen  337 EGAVESLSLLELQIACRERGMRALGVSEERLREQLRVWLDLSLDKKVPSVLLLLSRTFSLGQNSKAPSSSSGKLQIAAPD  416 (499)
T ss_pred             hhhhhHhhHHHHHHHHHhhhcchhccchhhhhHHHHHHHhhhccccCchHHHHHhhhhhhhhcccCCchhhhHhhhhccc
Confidence            99 99999999999999999997 6899999999999999999999999999999999999888888999999995 999


Q ss_pred             hhhhhhhhccccCCcchhhhhhhHHHhHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 013350          321 EVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKEEEEEEEEEQAKMKEAVR  373 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~k~kl~~l~~qe~~i~~e~~~~~~~~~~~~~~~~  373 (444)
                      .+......++.+++.+.++++.|++.|++||+.|.+|+++++++....|+..+
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~eee~~~~~~~k~~~~  469 (499)
T KOG1043|consen  417 DLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEEEEEKQYGRAKDALK  469 (499)
T ss_pred             cHHHhcccccccccccccchHHHHHhhhccccccchhhhcccccccccccccc
Confidence            99998888888888788889999999999999999999987776666555433

>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins	Back alignment and domain information

>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]	Back alignment and domain information

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []	Back alignment and domain information

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	Back alignment and domain information

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []	Back alignment and domain information

>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins	Back alignment and domain information

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		444
3skq_A		249	Mdm38 Is A 14-3-3-Like Receptor And Associates With		3e-34

>pdb|3SKQ|A Chain A, Mdm38 Is A 14-3-3-Like Receptor And Associates With The Protein Synthesis Machinery At The Inner Mitochondrial Membrane Length = 249

Back alignment and structure

Iteration: 1

Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 132/226 (58%), Gaps = 18/226 (7%) Query: 106 KLFPNMLPSTFQDKMREEEALKRRLIA-RIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAE 164 KLFPN+LPST++ ++++A + +LI R + ++FL +T++E N + + AE Sbjct: 1 KLFPNLLPSTYESG-KDKQAKRNKLIEIRKKTSEFLHETLEE-----SNLITYNTIENAE 54 Query: 165 DLDEFMNKVRTGAGV--------SNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISP 216 +F+N R +DEI A A++F ++ LDN+SRP+L M K+M + P Sbjct: 55 KKQKFLNFFRKLYSAKEGKIMTFQHDEISAIAQMFKNDSVLDNLSRPQLAAMSKFMSLRP 114 Query: 217 FGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGL-LSVEEMRQQ 275 FG D LRY +R +L++I NDDK I EGVESLS+ EL QAC RG+ +S E++ Sbjct: 115 FGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRGMKAYGVSKEDLVDN 174 Query: 276 LRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDE 321 L+ WL+L L +PS L++LS F+ G P+E S L ++ Sbjct: 175 LKVWLELRLRQKIPSVLMVLSSTFTFGG--LPKENYSKAFSPLAEK 218

PyMOL of 3skq

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		444
3skq_A		249	Mitochondrial distribution and morphology protein;	4e-80
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	3e-05

>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

 Score =  247 bits (631), Expect = 4e-80
 Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 34/249 (13%)

Query: 106 KLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAED 165
           KLFPN+LPST++    ++    + +  R + ++FL +T++E      N+   +  +  + 
Sbjct: 1   KLFPNLLPSTYESGKDKQAKRNKLIEIRKKTSEFLHETLEESNLITYNT--IENAEKKQK 58

Query: 166 LDEFMNKVRTGA-----GVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTD 220
              F  K+ +          +DEI A A++F ++  LDN+SRP+L  M K+M + PFG D
Sbjct: 59  FLNFFRKLYSAKEGKIMTFQHDEISAIAQMFKNDSVLDNLSRPQLAAMSKFMSLRPFGND 118

Query: 221 AYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDW 279
             LRY +R +L++I NDDK I  EGVESLS+ EL QAC  RG+    +S E++   L+ W
Sbjct: 119 NMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVW 178

Query: 280 LDLSLNHSVPSSLLILSRAFSVSGKVR--------------------------PEEAVQA 313
           L+L L   +PS L++LS  F+  G  +                            + +  
Sbjct: 179 LELRLRQKIPSVLMVLSSTFTFGGLPKENYSKAFSPLAEKKETKSKYDDLLDLYYDGILQ 238

Query: 314 TLSSLPDEV 322
            LSS+PD V
Sbjct: 239 VLSSIPDPV 247

PyMOL of 3skq

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		444
3skq_A		249	Mitochondrial distribution and morphology protein;	100.0
1jjr_A		151	KU70, thyroid autoantigen; DNA repair protein, pro	96.31
2do1_A		55	Nuclear protein HCC-1; SAP domain, structural geno	94.9
1zrj_A		50	E1B-55KDA-associated protein 5 isoform C; SAP doma	92.97
2rnn_A		114	E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind	92.95
2kvu_A		75	MKL/myocardin-like protein 1; SAP motif, DNA/RNA b	92.02
1h1j_S		51	THO1 protein; SAP domain, DNA binding; NMR {Saccha	91.83
1jjr_A		151	KU70, thyroid autoantigen; DNA repair protein, pro	86.32

>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=1.8e-66  Score=500.48  Aligned_cols=217  Identities=38%  Similarity=0.647  Sum_probs=179.3

Q ss_pred             HHcCCCcchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHhcCCC-----CCC
Q 013350          106 KLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGA-----GVS  180 (444)
Q Consensus       106 klFPnmLPSTF~~~~q~~e~lkk~l~~R~e~akfLq~tv~e~~~~~~~~~~~~~~~~~~~f~~f~~kvr~G~-----~pS  180 (444)
                      |+|||||||||+++++++++.++.+++|.++|+|||+|+++|+...+.+.  .....+++|.+||+||++|.     +||
T Consensus         1 KlFPNmLPSTfe~~~~k~~k~~kll~~r~e~a~FLq~tl~e~~~~~~~~~--~~~~~~~~f~~f~~Kvr~~~e~~~~~ps   78 (249)
T 3skq_A            1 KLFPNLLPSTYESGKDKQAKRNKLIEIRKKTSEFLHETLEESNLITYNTI--ENAEKKQKFLNFFRKLYSAKEGKIMTFQ   78 (249)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHTTCCCCCGGGC--SSHHHHHHHHHHHHHHHTCBTTBCEEEE
T ss_pred             CCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--ccHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            68999999999999999999998899999999999999999875443322  22345789999999999743     579


Q ss_pred             HHHHHHHHHhcCCccccCCCChHHHHHhHhhhCCCCCCcchHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHHHHHh
Q 013350          181 NDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRD  260 (444)
Q Consensus       181 ~eeIl~vaklF~d~l~LdnLsr~qL~aLcr~~~L~pfgt~~~LR~rLr~rL~~L~~DD~lI~~EGV~sLs~~EL~~AC~~  260 (444)
                      ++||++||++|+|+++||||+|+||++||++||++||||+++||+|||+|+++|++||++|.+|||++||.+||+.||++
T Consensus        79 ~eeIl~vaklF~de~tLdnLsr~qLvaLck~m~L~p~gt~~~LR~rLr~rl~~I~~DDr~I~~EGV~sLs~~ELr~AC~~  158 (249)
T 3skq_A           79 HDEISAIAQMFKNDSVLDNLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVS  158 (249)
T ss_dssp             HHHHHHHHTTSCHHHHHHHSCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcccccCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHhCcccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CCCHHHHHHHHHHHHhcccCCCCChhHHHHHhhhccCCCC--------------------------CcHHHHHH
Q 013350          261 RGLLG-LLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKV--------------------------RPEEAVQA  313 (444)
Q Consensus       261 RGi~~-~~s~e~LR~~L~~WL~Ls~~~~vP~sLLlls~a~~~~~~~--------------------------~~~~~l~~  313 (444)
                      |||++ ++++++||.||++||+||++++||+|||||||||+|++..                          .+||||.+
T Consensus       159 RGm~~~gls~e~LR~~L~~WL~Lsl~~~vPssLLilSra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  238 (249)
T 3skq_A          159 RGMKAYGVSKEDLVDNLKVWLELRLRQKIPSVLMVLSSTFTFGGLPKENYSKAFSPLAEKKETKSKYDDLLDLYYDGILQ  238 (249)
T ss_dssp             TTCCCTTCCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHGGGSSSCCCCCCEEEECHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHccCcchhhhhhhccchhhhhhccchhhhhHHHHHHHHHH
Confidence            99997 6999999999999999999999999999999999998753                          36799999


Q ss_pred             HHhcCChhhhh
Q 013350          314 TLSSLPDEVVD  324 (444)
Q Consensus       314 ~ls~lp~~~~~  324 (444)
                      |||||||+|||
T Consensus       239 vls~ipd~vyn  249 (249)
T 3skq_A          239 VLSSIPDPVYN  249 (249)
T ss_dssp             HHHHSCCTTTC
T ss_pred             HHccCCccccC
Confidence            99999999997

PyMOL of 3skq

>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1	Back alignment and structure

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1	Back alignment and structure

>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A	Back alignment and structure

>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		444
d1jeqa1		51	DNA binding C-terminal domain of ku70 {Human (Homo	95.63
d1h1js_		44	S/mar DNA-binding protein Tho1 {Baker's yeast (Sac	93.55
d1zrja1		37	Heterogeneous nuclear ribonucleoprotein U-like pro	92.77
d2do1a1		42	Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId	89.37

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0091  Score=42.67  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=36.1

Q ss_pred             HHHhccCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 013350          241 IQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLD  281 (444)
Q Consensus       241 I~~EGV~sLs~~EL~~AC~~RGi~~~~s~e~LR~~L~~WL~  281 (444)
                      +.+..+..|+..||+..|..||++..+..++|.+.+..|++
T Consensus        10 ~~~~~L~kltV~~LK~~lk~~gL~~sGkKa~Li~Ri~~~l~   50 (51)
T d1jeqa1          10 ISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ   50 (51)
T ss_dssp             HHHTCGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHT
T ss_pred             hccCcHhhCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhh
Confidence            34445999999999999999999987889999999999985

PyMOL of d1jeqa1

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure