Citrus Sinensis ID: 013351

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
MTCFIANAKFSSLPLSISTICCSSSSSSSSSPSKDGSKSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
ccEEcccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccEEEEEccHHHHHHHccccccccccHHHHHHHHHccccEEEEEccccEEEEcHHHHHHHHHHHHHHccccccccccEEEccEEEEEEEEcEEEEEEEEEEEcccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEcHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccEEEEEEEEHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHccccccHHHcccc
ccEHEEEEEEcccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHcccccccccccHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHcccEcEEEEEEcccccccccccEEEccHHHHHHHccccccccHHHHHHHHHHHccccEEEEEEcccEEEEccccHHHHHHHHHHHccccccEEEEEEccccEEEEEEccccEEEEEcccccHHHHHHccccccccHHHHHHHHccEEEEccccccccccccccccEEEEEEccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEEEHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHcccccHHHHHHHcc
mtcfianakfsslplsisticcssssssssspskdgsksvklredwrkrskpippggtypakdhcsrcglcdtYYIAHVKDACAFLGDGMSRIEGLETvvhgrgrrkdslddtyLGVHEELLYArktkpvegaqwTGIVTTIAIEMLKTGMVEAVVCvqsdpddrlsprpvlartpeevlaakgvkptlspnlnTLALVEAAGVKRLLFCGVgcqvqvdngtREGLDKFLKAassepetvLHYEFMQDYKVHLKHLDghieevpyfclpandlvdviapscyscfDYTNALADLVVGYmgvpkytgismtqhpqyITVRNERGKEMLSLVKNLLEitptissgdrrpfvmetvkaddnakmgrgpsqpapkfVGNLIAFFINlvgpkgleFARYSLDYHTIRNYLHVNRawgkkradkhmPSYAKKIVEMYNQNGQIDQMLSSK
MTCFIANakfsslplSISTICCSsssssssspskdgsksvklredwrkrskpippggtypakdhcsrcGLCDTYYIAHVKDACAFLGDGMSRIEGLetvvhgrgrrkdslddtyLGVHEELLyarktkpvegaqwTGIVTTIAIEMLKTGMVEAVVCVQsdpddrlsprpvlARTPEEvlaakgvkptlspnLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLeitptissgdrrpfVMETVKAddnakmgrgPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLhvnrawgkkradKHMPSYAKKIVEMYNQNGQIDQMLSSK
MTCFIANAKFsslplsisticcssssssssspskdgsksVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
**CFIANAKFSSLPLSISTICC**************************************AKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQ*********************AAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTI******************************KFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA******YAKKIVEM**************
********KFSSLPLSIST**************************************TYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI*******************************PAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQ***********
MTCFIANAKFSSLPLSISTI************************DWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
MTCFIANAKFSSLPLSISTICC*******************LREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSS*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTCFIANAKFSSLPLSISTICCSSSSSSSSSPSKDGSKSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query444 2.2.26 [Sep-21-2011]
Q8GS60462 7-hydroxymethyl chlorophy yes no 0.916 0.880 0.836 0.0
Q7XTG7471 7-hydroxymethyl chlorophy yes no 0.970 0.915 0.772 0.0
P46015397 Uncharacterized protein a yes no 0.822 0.919 0.501 1e-111
P80490291 Coenzyme F420 hydrogenase yes no 0.484 0.738 0.233 4e-08
Q00391280 Coenzyme F420 hydrogenase no no 0.423 0.671 0.259 8e-07
Q60341287 Coenzyme F420 hydrogenase yes no 0.227 0.351 0.330 4e-05
P19499281 Coenzyme F420 hydrogenase no no 0.421 0.665 0.268 9e-05
>sp|Q8GS60|HCAR_ARATH 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1 Back     alignment and function desciption
 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/428 (83%), Positives = 385/428 (89%), Gaps = 21/428 (4%)

Query: 38  KSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLE 97
           K VKLREDWR++S+PIPPGGTYPAKDHCS+CGLCDTYYIAHVK+ACAFLGDGMSRIE LE
Sbjct: 35  KKVKLREDWREKSRPIPPGGTYPAKDHCSQCGLCDTYYIAHVKEACAFLGDGMSRIESLE 94

Query: 98  TVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVC 157
            VVHGRGR+ DSL DTY GVH+E LYARK KPVEGAQWTGIVTTIAIEMLK+ MVEAVVC
Sbjct: 95  PVVHGRGRKADSLQDTYFGVHQEQLYARKLKPVEGAQWTGIVTTIAIEMLKSNMVEAVVC 154

Query: 158 VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ 217
           VQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVKRLLFCGVGCQVQ
Sbjct: 155 VQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVKRLLFCGVGCQVQ 214

Query: 218 ---------------------VDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHL 256
                                VDNGTR+GLDKFLKAAS EPETVLHYEFMQDYKV LKHL
Sbjct: 215 ALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYEFMQDYKVQLKHL 274

Query: 257 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYI 316
           DGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY+G++MT HPQYI
Sbjct: 275 DGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKYSGLNMTDHPQYI 334

Query: 317 TVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNL 376
           TVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+GP+QPAP FVGN+
Sbjct: 335 TVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQGPAQPAPLFVGNI 394

Query: 377 IAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQ 436
           IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYAKKIVEMYN+NGQ
Sbjct: 395 IAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYAKKIVEMYNKNGQ 454

Query: 437 IDQMLSSK 444
           ID+MLS K
Sbjct: 455 IDKMLSKK 462
Probable iron-sulfur flavoprotein that converts 7-hydroxymethyl chlorophyll a to chlorophyll a using ferredoxin as a reducing equivalent. Catalyzes the reduction of a hydroxymethyl group to a methyl group.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 7EC: .EC: 7EC: .EC: 2
>sp|Q7XTG7|HCAR_ORYSJ 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=HCAR PE=3 SV=2 Back     alignment and function description
>sp|P46015|Y1601_NOSS1 Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all1601 PE=4 SV=2 Back     alignment and function description
>sp|P80490|FRHB_METBF Coenzyme F420 hydrogenase subunit beta OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=frhB PE=1 SV=2 Back     alignment and function description
>sp|Q00391|FRHB_METVO Coenzyme F420 hydrogenase subunit beta OS=Methanococcus voltae GN=frhB PE=3 SV=1 Back     alignment and function description
>sp|Q60341|FRHB_METJA Coenzyme F420 hydrogenase subunit beta OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=frhB PE=3 SV=1 Back     alignment and function description
>sp|P19499|FRHB_METTH Coenzyme F420 hydrogenase subunit beta OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=frhB PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
255554300458 Coenzyme F420 hydrogenase subunit beta, 0.968 0.938 0.822 0.0
225433343457 PREDICTED: uncharacterized protein all16 0.916 0.890 0.848 0.0
356534864452 PREDICTED: uncharacterized protein all16 0.916 0.900 0.838 0.0
297848696461 coenzyme F420 hydrogenase family [Arabid 0.979 0.943 0.807 0.0
449487600459 PREDICTED: LOW QUALITY PROTEIN: 7-hydrox 0.977 0.945 0.803 0.0
449433213459 PREDICTED: 7-hydroxymethyl chlorophyll a 0.977 0.945 0.803 0.0
356577586452 PREDICTED: uncharacterized protein all16 0.970 0.953 0.778 0.0
30678943462 coenzyme F420 hydrogenase beta subunit [ 0.916 0.880 0.836 0.0
224110688456 predicted protein [Populus trichocarpa] 0.905 0.881 0.839 0.0
75144471471 RecName: Full=7-hydroxymethyl chlorophyl 0.970 0.915 0.772 0.0
>gi|255554300|ref|XP_002518190.1| Coenzyme F420 hydrogenase subunit beta, putative [Ricinus communis] gi|223542786|gb|EEF44323.1| Coenzyme F420 hydrogenase subunit beta, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/451 (82%), Positives = 400/451 (88%), Gaps = 21/451 (4%)

Query: 15  LSISTICCSSSSSSSSSPSKDGSKSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTY 74
           LS+ T   SS SSS  + S   +KSVKLREDWR+RS+PIPPGGTYPAKDHCSRCGLCDTY
Sbjct: 8   LSLPTFISSSYSSSKDTNSNSSNKSVKLREDWRQRSRPIPPGGTYPAKDHCSRCGLCDTY 67

Query: 75  YIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQ 134
           YI+HV++ACAFLGDGMSRIEGLE VVHGRGR+ DS D+ YLGVHEELLYARKTKPVEGAQ
Sbjct: 68  YISHVRNACAFLGDGMSRIEGLEAVVHGRGRKIDSSDEMYLGVHEELLYARKTKPVEGAQ 127

Query: 135 WTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLN 194
           WTGIVTTIAIEMLK  MV+AV+CVQSDP+DRLSPRPVLARTP+EVLAAKGVKPTLSPNLN
Sbjct: 128 WTGIVTTIAIEMLKADMVDAVICVQSDPEDRLSPRPVLARTPQEVLAAKGVKPTLSPNLN 187

Query: 195 TLALVEAAGVKRLLFCGVGCQVQ---------------------VDNGTREGLDKFLKAA 233
           TLALVEA+GVKRLLFCGVGCQVQ                     VDNGTREGLDKFLKAA
Sbjct: 188 TLALVEASGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAA 247

Query: 234 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 293
           S EPETVLHYEFMQDYKVHLKHLDG IEEVPYFCLPA DLVDVIAPSCYSCFDYTNALAD
Sbjct: 248 SDEPETVLHYEFMQDYKVHLKHLDGRIEEVPYFCLPATDLVDVIAPSCYSCFDYTNALAD 307

Query: 294 LVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETV 353
           LVVGYMGVPKY G+SMTQHPQY+TVRN+RG+EML LV+ LLEITPTISSGDRRPFVMETV
Sbjct: 308 LVVGYMGVPKYAGVSMTQHPQYVTVRNDRGREMLDLVRGLLEITPTISSGDRRPFVMETV 367

Query: 354 KADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGK 413
           KADDNAK+G+GPSQ APKFVGN +AF +NL+GPKGLEFARYSLDYHTIRNYL+ NRAWGK
Sbjct: 368 KADDNAKLGKGPSQSAPKFVGNFLAFILNLIGPKGLEFARYSLDYHTIRNYLYTNRAWGK 427

Query: 414 KRADKHMPSYAKKIVEMYNQNGQIDQMLSSK 444
            RA++H PSYAKKIVEMYNQNGQIDQML +K
Sbjct: 428 ARAERHTPSYAKKIVEMYNQNGQIDQMLQNK 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433343|ref|XP_002285592.1| PREDICTED: uncharacterized protein all1601 [Vitis vinifera] gi|297741879|emb|CBI33314.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534864|ref|XP_003535971.1| PREDICTED: uncharacterized protein all1601-like [Glycine max] Back     alignment and taxonomy information
>gi|297848696|ref|XP_002892229.1| coenzyme F420 hydrogenase family [Arabidopsis lyrata subsp. lyrata] gi|297338071|gb|EFH68488.1| coenzyme F420 hydrogenase family [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449487600|ref|XP_004157707.1| PREDICTED: LOW QUALITY PROTEIN: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449433213|ref|XP_004134392.1| PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356577586|ref|XP_003556905.1| PREDICTED: uncharacterized protein all1601-like [Glycine max] Back     alignment and taxonomy information
>gi|30678943|ref|NP_171956.2| coenzyme F420 hydrogenase beta subunit [Arabidopsis thaliana] gi|75150253|sp|Q8GS60.1|HCAR_ARATH RecName: Full=7-hydroxymethyl chlorophyll a reductase, chloroplastic; Flags: Precursor gi|25083091|gb|AAN72040.1| unknown protein [Arabidopsis thaliana] gi|26451024|dbj|BAC42618.1| unknown protein [Arabidopsis thaliana] gi|30387563|gb|AAP31947.1| At1g04620 [Arabidopsis thaliana] gi|332189601|gb|AEE27722.1| coenzyme F420 hydrogenase beta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224110688|ref|XP_002315601.1| predicted protein [Populus trichocarpa] gi|222864641|gb|EEF01772.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|75144471|sp|Q7XTG7.2|HCAR_ORYSJ RecName: Full=7-hydroxymethyl chlorophyll a reductase, chloroplastic; Flags: Precursor gi|38344778|emb|CAE01504.2| OSJNBb0026L04.9 [Oryza sativa Japonica Group] gi|38347660|emb|CAE04699.2| OSJNBa0041M06.1 [Oryza sativa Japonica Group] gi|116309054|emb|CAH66165.1| H0107B07.4 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
TAIR|locus:2197848462 HCAR "7-hydroxymethyl chloroph 0.594 0.571 0.779 5.3e-111
TAIR|locus:2197848 HCAR "7-hydroxymethyl chlorophyll a (HMChl) reductase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 212/272 (77%), Positives = 233/272 (85%)

Query:   178 EVLAAKGVKPTL----SPNLNTLALVEA-AGVKRLLFCGVGCQVQVDNGTREGLDKFLKA 232
             E++ A GVK  L       +  L  VE    +++L   G  C   VDNGTR+GLDKFLKA
Sbjct:   194 ELIEASGVKRLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNC---VDNGTRDGLDKFLKA 250

Query:   233 ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALA 292
             AS EPETVLHYEFMQDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALA
Sbjct:   251 ASKEPETVLHYEFMQDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALA 310

Query:   293 DLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMET 352
             DLV+GYMGVPKY+G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ET
Sbjct:   311 DLVIGYMGVPKYSGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTET 370

Query:   353 VKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWG 412
             VKADD AK G+GP+QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WG
Sbjct:   371 VKADDAAKFGQGPAQPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWG 430

Query:   413 KKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK 444
             K+RA+ HMPSYAKKIVEMYN+NGQID+MLS K
Sbjct:   431 KQRANTHMPSYAKKIVEMYNKNGQIDKMLSKK 462
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0050454 "coenzyme F420 hydrogenase activity" evidence=ISS
GO:0015994 "chlorophyll metabolic process" evidence=IDA
GO:0033354 "chlorophyll cycle" evidence=IDA
GO:0090415 "7-hydroxymethyl chlorophyll a reductase activity" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GS60HCAR_ARATH1, ., 1, 7, ., 7, ., 20.83640.91660.8809yesno
Q7XTG7HCAR_ORYSJ1, ., 1, 7, ., 7, ., 20.77220.97070.9150yesno
P46015Y1601_NOSS1No assigned EC number0.50120.82200.9193yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020402001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (457 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019306001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)
  •     0.466
GSVIVG00021608001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (508 aa)
  •     0.446
GSVIVG00029773001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (142 aa)
  •     0.440
GSVIVG00036954001
SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (121 aa)
  •     0.432
GSVIVG00002190001
SubName- Full=Chromosome undetermined scaffold_127, whole genome shotgun sequence; (437 aa)
  ••    0.430
GSVIVG00024604001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (207 aa)
  •     0.429
GSVIVG00017440001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (113 aa)
  •     0.425
GSVIVG00035277001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (97 aa)
  •     0.422
GSVIVG00034898001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (285 aa)
  •     0.422
GSVIVG00028801001
SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (151 aa)
  •     0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
COG1035332 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, 5e-48
pfam04432162 pfam04432, FrhB_FdhB_C, Coenzyme F420 hydrogenase/ 3e-26
pfam0442282 pfam04422, FrhB_FdhB_N, Coenzyme F420 hydrogenase/ 4e-26
PRK09325282 PRK09325, PRK09325, coenzyme F420-reducing hydroge 2e-15
TIGR03289275 TIGR03289, frhB, coenzyme F420 hydrogenase, subuni 4e-13
PRK09326341 PRK09326, PRK09326, F420H2 dehydrogenase subunit F 4e-06
>gnl|CDD|223966 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion] Back     alignment and domain information 
 Score =  167 bits (424), Expect = 5e-48
 Identities = 82/314 (26%), Positives = 123/314 (39%), Gaps = 55/314 (17%)

Query: 59  YPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVH 118
                 C  C     Y I    +A   + + M    G            D  +  Y  V+
Sbjct: 4   AGLCTGCGTCAAVCPYAITERDEAPLLIEECMDNGHG---TCLKVCPEVD--EGKYGEVY 58

Query: 119 EELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEE 178
           E    +  +K  +GAQ  G+VT I    L+ G+++ VV V S  ++   P PV+A TPEE
Sbjct: 59  EA--RSTDSKLRKGAQDGGVVTAILAYALEEGLIDGVVVVGS-GEEEWKPIPVVATTPEE 115

Query: 179 VLAAKGVKPTLSPNLNTLALVEAA---GVKRLLFCGVGCQVQ------------------ 217
           +L   G K T+SPNL   AL EA    G++R+   G  CQ+Q                  
Sbjct: 116 LLETAGSKYTISPNL--SALKEAVRKYGLERVAVVGTPCQIQAVRKLQKFDLGLKHRREK 173

Query: 218 ---------VDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCL 268
                    ++N + EGL KFL+         +    ++  K  ++  DG  E       
Sbjct: 174 IVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEKMDIRKGKFVVELKDG--EVKEI--- 228

Query: 269 PANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLS 328
           P  +  +     C  C D+   LAD+ VG +G P             + VR E+G+E+L 
Sbjct: 229 PLKETEEYGPEGCRVCTDFVAELADISVGSVGSPDGW--------STVLVRTEKGEEILD 280

Query: 329 LV--KNLLEITPTI 340
                 LLE+    
Sbjct: 281 GAVEAGLLEVKEIE 294

Length = 332
>gnl|CDD|218086 pfam04432, FrhB_FdhB_C, Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Back     alignment and domain information
>gnl|CDD|218081 pfam04422, FrhB_FdhB_N, Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Back     alignment and domain information
>gnl|CDD|236466 PRK09325, PRK09325, coenzyme F420-reducing hydrogenase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|132332 TIGR03289, frhB, coenzyme F420 hydrogenase, subunit beta Back     alignment and domain information
>gnl|CDD|181779 PRK09326, PRK09326, F420H2 dehydrogenase subunit F; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 444
PRK09326341 F420H2 dehydrogenase subunit F; Provisional 100.0
COG1035332 FrhB Coenzyme F420-reducing hydrogenase, beta subu 100.0
TIGR03289275 frhB coenzyme F420 hydrogenase, subunit beta. This 100.0
PRK09325282 coenzyme F420-reducing hydrogenase subunit beta; V 100.0
PF04432161 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogena 99.92
PF0442282 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogena 99.85
COG1143172 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino 97.15
PF1469759 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE 97.15
PF1323752 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A. 96.3
PF1283724 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 96.28
COG1149284 MinD superfamily P-loop ATPase containing an inser 95.9
PF1279722 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 95.69
PF0003724 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T 95.63
PRK08318420 dihydropyrimidine dehydrogenase subunit B; Validat 95.13
TIGR02512374 Fe_only_hydrog hydrogenases, Fe-only. This model d 94.86
PRK06273165 ferredoxin; Provisional 94.55
PRK08348120 NADH-plastoquinone oxidoreductase subunit; Provisi 94.29
TIGR0293691 fdxN_nitrog ferredoxin III, nif-specific. Members 94.22
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 94.2
COG114491 Pyruvate:ferredoxin oxidoreductase and related 2-o 93.99
PF1280017 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 93.93
PF1283852 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014 93.72
PF1318755 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_ 93.72
PRK08222181 hydrogenase 4 subunit H; Validated 93.54
PRK05888164 NADH dehydrogenase subunit I; Provisional 93.43
CHL00014167 ndhI NADH dehydrogenase subunit I 93.38
TIGR02176 1165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 93.22
PRK09626103 oorD 2-oxoglutarate-acceptor oxidoreductase subuni 93.13
PF1469759 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE 93.11
TIGR01971122 NuoI NADH-quinone oxidoreductase, chain I. This mo 92.91
TIGR00403183 ndhI NADH-plastoquinone oxidoreductase subunit I p 92.85
COG114599 NapF Ferredoxin [Energy production and conversion] 92.77
PRK14028312 pyruvate ferredoxin oxidoreductase subunit gamma/d 92.74
PRK12387180 formate hydrogenlyase complex iron-sulfur subunit; 92.57
TIGR0217978 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta 92.34
TIGR02912314 sulfite_red_C sulfite reductase, subunit C. Member 92.28
PF1279815 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 92.2
COG114491 Pyruvate:ferredoxin oxidoreductase and related 2-o 91.91
CHL0006581 psaC photosystem I subunit VII 91.74
PLN0007181 photosystem I subunit VII; Provisional 91.68
COG1148622 HdrA Heterodisulfide reductase, subunit A and rela 91.46
PRK09624105 porD pyuvate ferredoxin oxidoreductase subunit del 91.43
PRK09625133 porD pyruvate flavodoxin oxidoreductase subunit de 91.34
TIGR00276282 iron-sulfur cluster binding protein, putative. Thi 91.02
PRK06991270 ferredoxin; Provisional 90.78
TIGR02745434 ccoG_rdxA_fixG cytochrome c oxidase accessory prot 90.64
PF1374669 Fer4_18: 4Fe-4S dicluster domain 90.59
PRK09477271 napH quinol dehydrogenase membrane component; Prov 90.56
PRK05113191 electron transport complex protein RnfB; Provision 90.49
PF1318755 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_ 90.45
PRK09623105 vorD 2-ketoisovalerate ferredoxin oxidoreductase s 90.42
TIGR02163255 napH_ ferredoxin-type protein, NapH/MauN family. M 90.13
TIGR00402101 napF ferredoxin-type protein NapF. The gene codes 89.96
PRK0265181 photosystem I subunit VII; Provisional 89.79
COG1245 591 Predicted ATPase, RNase L inhibitor (RLI) homolog 89.72
PF1318357 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_ 89.61
PRK10194163 ferredoxin-type protein; Provisional 89.48
COG2768354 Uncharacterized Fe-S center protein [General funct 89.46
TIGR02060132 aprB adenosine phosphosulphate reductase, beta sub 89.0
TIGR00314784 cdhA CO dehydrogenase/acetyl-CoA synthase complex, 88.93
COG1142165 HycB Fe-S-cluster-containing hydrogenase component 88.91
PRK1544995 ferredoxin-like protein FixX; Provisional 88.73
PF1324798 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX 88.43
COG114168 Fer Ferredoxin [Energy production and conversion] 88.29
PF1345965 Fer4_15: 4Fe-4S single cluster domain 88.15
PF1348467 Fer4_16: 4Fe-4S double cluster binding domain 88.04
TIGR01944165 rnfB electron transport complex, RnfABCDGE type, B 87.4
TIGR0304880 PS_I_psaC photosystem I iron-sulfur protein PsaC. 87.29
COG1139459 Uncharacterized conserved protein containing a fer 86.91
COG4231640 Indolepyruvate ferredoxin oxidoreductase, alpha an 86.87
TIGR02700234 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T 86.78
TIGR02486314 RDH reductive dehalogenase. This model represents 86.67
PRK05035695 electron transport complex protein RnfC; Provision 86.63
COG2878198 Predicted NADH:ubiquinone oxidoreductase, subunit 86.49
PRK09898208 hypothetical protein; Provisional 86.45
TIGR0293691 fdxN_nitrog ferredoxin III, nif-specific. Members 86.38
TIGR03478321 DMSO_red_II_bet DMSO reductase family type II enzy 86.29
COG114668 Ferredoxin [Energy production and conversion] 85.87
COG1149284 MinD superfamily P-loop ATPase containing an inser 85.82
TIGR03224411 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p 85.71
PF1337058 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 85.3
COG2221317 DsrA Dissimilatory sulfite reductase (desulfovirid 85.14
COG0437203 HybA Fe-S-cluster-containing hydrogenase component 85.05
TIGR03294228 FrhG coenzyme F420 hydrogenase, subunit gamma. Thi 84.76
PRK13795636 hypothetical protein; Provisional 84.63
COG1152772 CdhA CO dehydrogenase/acetyl-CoA synthase alpha su 83.84
PF1323752 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A. 83.73
PRK13984 604 putative oxidoreductase; Provisional 83.49
PRK07118280 ferredoxin; Validated 83.19
PRK07569234 bidirectional hydrogenase complex protein HoxU; Va 82.99
COG1600337 Uncharacterized Fe-S protein [Energy production an 82.97
COG1148622 HdrA Heterodisulfide reductase, subunit A and rela 82.95
PRK13409 590 putative ATPase RIL; Provisional 82.53
TIGR03149225 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S 82.43
TIGR01945435 rnfC electron transport complex, RnfABCDGE type, C 82.38
TIGR01582283 FDH-beta formate dehydrogenase, beta subunit, Fe-S 81.99
PRK08764135 ferredoxin; Provisional 81.98
cd01916731 ACS_1 Acetyl-CoA synthase (ACS), also known as ace 81.62
TIGR01660492 narH nitrate reductase, beta subunit. The Nitrate 81.11
PF1283852 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014 81.09
KOG3256212 consensus NADH:ubiquinone oxidoreductase, NDUFS8/2 81.06
TIGR00397213 mauM_napG MauM/NapG family ferredoxin-type protein 80.66
PRK12809 639 putative oxidoreductase Fe-S binding subunit; Revi 80.49
PRK14993244 tetrathionate reductase subunit B; Provisional 80.15
>PRK09326 F420H2 dehydrogenase subunit F; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-47  Score=390.44  Aligned_cols=257  Identities=25%  Similarity=0.389  Sum_probs=209.3

Q ss_pred             CCCCCCCccCCchhhcccccchhhhh---c----------------cCCCcccccccCccccccCCCCCCCCCCcCCcce
Q 013351           59 YPAKDHCSRCGLCDTYYIAHVKDACA---F----------------LGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHE  119 (444)
Q Consensus        59 ~~~~~lCtGCGaC~siCp~~~~~a~~---~----------------~~~Gc~~c~~vCp~~~~r~~~~~~~~e~~~G~~~  119 (444)
                      +++.+.|+|||+|.++||...+..-.   +                ...+|+.|.++||.++....       ..++.+.
T Consensus         8 vi~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~~~~-------~~i~~~~   80 (341)
T PRK09326          8 VIEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDGYIE-------DELANVR   80 (341)
T ss_pred             EECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCccccc-------ccccchh
Confidence            67788999999999999975322210   0                01247889999998654321       2355566


Q ss_pred             eeEEEeccCCcCCCCchhHHHHHHHHHHHcCCccEEEEEeecCCCCCCceeEEEcCHHHHhhhcCCcccccccHHHHHHH
Q 013351          120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV  199 (444)
Q Consensus       120 ~~yaa~skd~r~~SsSGGi~TaLa~~lLe~g~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~rGSKY~qS~~l~~l~~i  199 (444)
                      ..|++|+   +..|||||++|+|+.++|++|.||+|+.++.  ++.|+++|++++|+|||.+++||||++|++++.|+++
T Consensus        81 ~~yaa~~---~~~s~sGG~~t~l~~~~L~~g~Vd~V~~~~~--~~~~~~~~~~~~~~eel~~~~gSkY~~s~~~~~l~~~  155 (341)
T PRK09326         81 KFFGARS---NIGGQDGGVTSAILKSLLKQGEIDCAVGITR--NEKWETELVLLTSAEDVERTRGTKYTYDSVLSALREP  155 (341)
T ss_pred             heeeecc---ccccccccHHHHHHHHHHHcCCccEEEEecc--CCCccceeEEECCHHHHHHhcCCcccCcchHHHHHHH
Confidence            8899988   6789999999999999999999999997654  5679999999999999999999999999999999999


Q ss_pred             HHcCCcEEEEEeecccccc---------------------cCcchHHH-HHHHHH-hCCCCCCeEEEEEecCCEEEEEEe
Q 013351          200 EAAGVKRLLFCGVGCQVQV---------------------DNGTREGL-DKFLKA-ASSEPETVLHYEFMQDYKVHLKHL  256 (444)
Q Consensus       200 ~~~g~kkVlfvGtPCQI~~---------------------dn~~~~~l-~~~L~~-~~~~~~~V~~~~FR~~g~~~i~~~  256 (444)
                      ++.+ ++||||||||||+.                     +|+....+ .+|++. +++++++|.+++||+ +.+++.+.
T Consensus       156 ~~~~-~kVa~vG~PCqi~alr~~~~~~~~~~l~~Igl~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~r~-~~~~~~~~  233 (341)
T PRK09326        156 FEKY-DRIAVIGVPCQAHGARLIRENVNDKIVLIIGLLCMESFHHDVMLDKIIPEIMGVKIEDVVKMDFTK-GKFWAYTK  233 (341)
T ss_pred             HhcC-CeEEEEcCchhHHHHHHHHhhcccceEEEEccccCCCCChhHHHHHHHHHhcCCCHHHeeEEEEEC-CEEEEEEc
Confidence            8765 99999999999991                     23334333 567865 678889999999994 46778888


Q ss_pred             cCcEEEeecccccccccccccCcCCccccCCCCCCCceEEEecCCCCCCCCCcCCCCeEEEEeChHHHHHHHHhhcccee
Q 013351          257 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI  336 (444)
Q Consensus       257 dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~t~~~ADITvGd~G~~~~~G~S~~~~~q~VlVrTekG~~Ll~~~~~~le~  336 (444)
                      ||++..+++.     .++.++|++|+.|+|+++++||||+||+|.|.  |+|      +|||||+||++||+.+++.+++
T Consensus       234 ~g~~~~~~~~-----~~~~~~r~~C~~C~D~~~~~aDIsiGd~g~~~--G~s------~vivrt~kG~~l~~~a~~~~~~  300 (341)
T PRK09326        234 DGEVHSVPIK-----DVAKYARNPCHHCCDYTSVFADISVGSVGAPD--GWN------SVLIRTDIGEKYFKMVRDELEI  300 (341)
T ss_pred             CCcEEEeEHH-----HhhHhhcCCCccccccCCcccceeeeccCCCC--ceE------EEEEeChHHHHHHHHHHHhccc
Confidence            9987766543     34467999999999999999999999999885  999      9999999999999999988777


Q ss_pred             ccCCCC
Q 013351          337 TPTISS  342 (444)
Q Consensus       337 ~~~~~~  342 (444)
                      .+.+..
T Consensus       301 ~~~~~~  306 (341)
T PRK09326        301 MEDPKP  306 (341)
T ss_pred             cccCCC
Confidence            666543

>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta Back     alignment and domain information
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated Back     alignment and domain information
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1 Back     alignment and domain information
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1 Back     alignment and domain information
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion] Back     alignment and domain information
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B Back     alignment and domain information
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A Back     alignment and domain information
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] Back     alignment and domain information
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only Back     alignment and domain information
>PRK06273 ferredoxin; Provisional Back     alignment and domain information
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional Back     alignment and domain information
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion] Back     alignment and domain information
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J Back     alignment and domain information
>PRK08222 hydrogenase 4 subunit H; Validated Back     alignment and domain information
>PRK05888 NADH dehydrogenase subunit I; Provisional Back     alignment and domain information
>CHL00014 ndhI NADH dehydrogenase subunit I Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed Back     alignment and domain information
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B Back     alignment and domain information
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I Back     alignment and domain information
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein Back     alignment and domain information
>COG1145 NapF Ferredoxin [Energy production and conversion] Back     alignment and domain information
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional Back     alignment and domain information
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional Back     alignment and domain information
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>TIGR02912 sulfite_red_C sulfite reductase, subunit C Back     alignment and domain information
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion] Back     alignment and domain information
>CHL00065 psaC photosystem I subunit VII Back     alignment and domain information
>PLN00071 photosystem I subunit VII; Provisional Back     alignment and domain information
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] Back     alignment and domain information
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>TIGR00276 iron-sulfur cluster binding protein, putative Back     alignment and domain information
>PRK06991 ferredoxin; Provisional Back     alignment and domain information
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG Back     alignment and domain information
>PF13746 Fer4_18: 4Fe-4S dicluster domain Back     alignment and domain information
>PRK09477 napH quinol dehydrogenase membrane component; Provisional Back     alignment and domain information
>PRK05113 electron transport complex protein RnfB; Provisional Back     alignment and domain information
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J Back     alignment and domain information
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family Back     alignment and domain information
>TIGR00402 napF ferredoxin-type protein NapF Back     alignment and domain information
>PRK02651 photosystem I subunit VII; Provisional Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N Back     alignment and domain information
>PRK10194 ferredoxin-type protein; Provisional Back     alignment and domain information
>COG2768 Uncharacterized Fe-S center protein [General function prediction only] Back     alignment and domain information
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit Back     alignment and domain information
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit Back     alignment and domain information
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion] Back     alignment and domain information
>PRK15449 ferredoxin-like protein FixX; Provisional Back     alignment and domain information
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B Back     alignment and domain information
>COG1141 Fer Ferredoxin [Energy production and conversion] Back     alignment and domain information
>PF13459 Fer4_15: 4Fe-4S single cluster domain Back     alignment and domain information
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain Back     alignment and domain information
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit Back     alignment and domain information
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC Back     alignment and domain information
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion] Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family Back     alignment and domain information
>TIGR02486 RDH reductive dehalogenase Back     alignment and domain information
>PRK05035 electron transport complex protein RnfC; Provisional Back     alignment and domain information
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion] Back     alignment and domain information
>PRK09898 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific Back     alignment and domain information
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit Back     alignment and domain information
>COG1146 Ferredoxin [Energy production and conversion] Back     alignment and domain information
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] Back     alignment and domain information
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein Back     alignment and domain information
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A Back     alignment and domain information
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion] Back     alignment and domain information
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma Back     alignment and domain information
>PRK13795 hypothetical protein; Provisional Back     alignment and domain information
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion] Back     alignment and domain information
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A Back     alignment and domain information
>PRK13984 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK07118 ferredoxin; Validated Back     alignment and domain information
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated Back     alignment and domain information
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion] Back     alignment and domain information
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein Back     alignment and domain information
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit Back     alignment and domain information
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing Back     alignment and domain information
>PRK08764 ferredoxin; Provisional Back     alignment and domain information
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA Back     alignment and domain information
>TIGR01660 narH nitrate reductase, beta subunit Back     alignment and domain information
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein Back     alignment and domain information
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed Back     alignment and domain information
>PRK14993 tetrathionate reductase subunit B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 68/474 (14%), Positives = 140/474 (29%), Gaps = 138/474 (29%)

Query: 63  DHCSRCGLCDTYYIAHVKDA-CAFLGDGMSRI---EGLETVVHGRGRRKDSLDDTYLGVH 118
            +  +  +   +  A V +  C  + D    I   E ++ ++      KD++  T     
Sbjct: 15  QYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLR--- 66

Query: 119 EELLYARKTKPVEGAQ------------WTGIVTTIAIEMLKTGMVEAVVCVQSDP---- 162
             L +   +K  E  Q            +  +++ I  E  +  M+  +   Q D     
Sbjct: 67  --LFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 163 DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLN------------TLAL--VEAAGVKRLL 208
           +   +   V +R  +  L  +     L P  N             +AL    +  V+  +
Sbjct: 123 NQVFAKYNV-SR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 209 FCGV-----GCQVQVDNGTREGLDKFL----KAASSEPETVLHYEF-MQDYKVHLKHLDG 258
              +                E L K L       +S  +   + +  +   +  L+ L  
Sbjct: 181 DFKIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-- 237

Query: 259 HIEEVPYF-CLPANDLV--DVIAPSCYSCFDY-------TN--ALADLVVGYMGVP---- 302
            ++  PY  CL    LV  +V     ++ F+        T    + D +           
Sbjct: 238 -LKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 303 ----------------KYTGISMTQ--------HPQYITVRNERGKEMLSLVKNLL---- 334
                           KY               +P+ +++  E  ++ L+   N      
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 335 -EITPTISSG--------DRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVG 385
            ++T  I S          R+ F   +V    +A +   P+        ++I   + +V 
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI---PTILLSLIWFDVIKSDVMVVV 408

Query: 386 PKGLEFARYSL---DYHTIRNYLH----VNRAWGKKRADKHMPSYAKKIVEMYN 432
               +  +YSL           +       +   +     H     + IV+ YN
Sbjct: 409 N---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYN 454
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
2fgo_A82 Ferredoxin; allochromatium vinosum, [4Fe-4S] clust 95.31
1dax_A64 Ferredoxin I; electron transport, electron-transfe 95.29
1rgv_A80 Ferredoxin; electron transport; 2.90A {Thauera aro 95.28
1rof_A60 Ferredoxin; electron transport, iron-sulfur; NMR { 95.03
3i9v_9182 NADH-quinone oxidoreductase subunit 9; electron tr 94.93
1xer_A103 Ferredoxin; electron transport, iron-sulfur, dupli 94.83
3eun_A82 Ferredoxin; electron transport, [4Fe-4S] cluster, 94.82
1dwl_A59 Ferredoxin I; electron transfer, model, heteronucl 94.75
2zvs_A85 Uncharacterized ferredoxin-like protein YFHL; elec 94.71
2fdn_A55 Ferredoxin; electron transport, iron-sulfur, 4Fe-4 94.35
1jb0_C80 Photosystem I iron-sulfur center; membrane protein 94.29
1f2g_A58 Ferredoxin II; electron transport, FDII desulfovib 94.24
7fd1_A106 FD1, protein (7-Fe ferredoxin I); electron transpo 94.22
1hfe_L421 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg 93.96
1bc6_A77 7-Fe ferredoxin; electron transport, iron-sulfur; 93.31
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 93.23
3gyx_B166 Adenylylsulfate reductase; oxidoreductase; HET: FA 92.66
1h98_A78 Ferredoxin; electron transport, thermophilic, iron 92.63
2v2k_A105 Ferredoxin; iron, transport, iron-sulfur, mycobact 92.45
1jnr_B150 Adenylylsulfate reductase; oxidoreductase; HET: FA 92.44
1iqz_A81 Ferredoxin; iron-sulfer protein, ultlahigh resolut 91.34
1gte_A1025 Dihydropyrimidine dehydrogenase; electron transfer 91.22
2fdn_A55 Ferredoxin; electron transport, iron-sulfur, 4Fe-4 90.99
7fd1_A106 FD1, protein (7-Fe ferredoxin I); electron transpo 90.89
1bc6_A77 7-Fe ferredoxin; electron transport, iron-sulfur; 90.56
1h98_A78 Ferredoxin; electron transport, thermophilic, iron 90.22
1sj1_A66 Ferredoxin; thermostability, iron-sulfur cluster, 90.01
3c8y_A574 Iron hydrogenase 1; dithiomethylether, H-cluster, 88.35
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 87.67
2v2k_A105 Ferredoxin; iron, transport, iron-sulfur, mycobact 87.46
2h88_B252 Succinate dehydrogenase IP subunit; complex II, me 86.47
1kqf_B294 FDH-N beta S, formate dehydrogenase, nitrate-induc 86.4
2ivf_B352 Ethylbenzene dehydrogenase beta-subunit; anaerobic 86.37
2wdq_B238 Succinate dehydrogenase iron-sulfur subunit; succi 86.13
1xer_A103 Ferredoxin; electron transport, iron-sulfur, dupli 85.92
2bs2_B241 Quinol-fumarate reductase iron-sulfur subunit B; 2 85.82
1q16_B512 Respiratory nitrate reductase 1 beta chain; membra 85.72
1kf6_B243 Fumarate reductase iron-sulfur protein; respiratio 85.17
2vpz_B195 NRFC protein; oxidoreductase, molybdopterin guanin 84.29
1jb0_C80 Photosystem I iron-sulfur center; membrane protein 84.04
3i9v_9182 NADH-quinone oxidoreductase subunit 9; electron tr 82.38
3i9v_3 783 NADH-quinone oxidoreductase subunit 3; electron tr 82.26
3j16_B 608 RLI1P; ribosome recycling, translation, eukarya, r 81.66
1rgv_A80 Ferredoxin; electron transport; 2.90A {Thauera aro 81.5
1dwl_A59 Ferredoxin I; electron transfer, model, heteronucl 81.31
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} Back     alignment and structure
Probab=95.31  E-value=0.0053  Score=48.08  Aligned_cols=41  Identities=12%  Similarity=0.229  Sum_probs=27.3

Q ss_pred             CCCCCCCccCCchhhcccccchhh----hhccC---CCcc------cccccCcc
Q 013351           59 YPAKDHCSRCGLCDTYYIAHVKDA----CAFLG---DGMS------RIEGLETV   99 (444)
Q Consensus        59 ~~~~~lCtGCGaC~siCp~~~~~a----~~~~~---~Gc~------~c~~vCp~   99 (444)
                      ++..+.|++||.|..+||.+.+..    ..++.   .+|.      .|.++||.
T Consensus         2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~   55 (82)
T 2fgo_A            2 LKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPV   55 (82)
T ss_dssp             BCCCTTCCCCCTTGGGCTTCCEEECSSSEEECTTTCCTTTTTCSSCHHHHHCTT
T ss_pred             ceeCCCCCChhhHHHHCChhccCCCCCeEEEEchhCccCCCcCCCCHhHhhCCc
Confidence            466788999999999999753211    01111   2355      78889985
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Back     alignment and structure
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 Back     alignment and structure
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Back     alignment and structure
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* Back     alignment and structure
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Back     alignment and structure
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A Back     alignment and structure
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Back     alignment and structure
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli} Back     alignment and structure
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Back     alignment and structure
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* Back     alignment and structure
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Back     alignment and structure
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... Back     alignment and structure
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Back     alignment and structure
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Back     alignment and structure
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 Back     alignment and structure
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} Back     alignment and structure
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* Back     alignment and structure
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Back     alignment and structure
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... Back     alignment and structure
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A Back     alignment and structure
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 Back     alignment and structure
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Back     alignment and structure
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} Back     alignment and structure
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ... Back     alignment and structure
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* Back     alignment and structure
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} Back     alignment and structure
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B* Back     alignment and structure
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Back     alignment and structure
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B* Back     alignment and structure
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B* Back     alignment and structure
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B* Back     alignment and structure
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B* Back     alignment and structure
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* Back     alignment and structure
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* Back     alignment and structure
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 Back     alignment and structure
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
d1gtea5173 Dihydropyrimidine dehydrogenase, C-terminal domain 96.54
d1hfel285 Fe-only hydrogenase larger subunit, N-domain {Desu 96.48
d2fdna_55 Ferredoxin II {Clostridium acidurici [TaxId: 1556] 96.2
d1blua_80 Ferredoxin II {Chromatium vinosum [TaxId: 1049]} 96.06
d1vjwa_59 Ferredoxin A {Thermotoga maritima [TaxId: 2336]} 96.03
d2c42a5117 Pyruvate-ferredoxin oxidoreductase, PFOR, domain V 95.92
d1rgva_80 Ferredoxin II {Thauera aromatica [TaxId: 59405]} 95.83
d1xera_103 Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} 95.81
d1fxra_64 Ferredoxin I {Sulfate-reducing bacteria (Desulfovi 95.75
d1sj1a_66 Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI 95.74
d1jnrb_149 Adenylylsulfate reductase B subunit {Archaeon Arch 95.6
d1iqza_81 Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1 95.58
d2fug91154 NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus 95.49
d1bc6a_77 Ferredoxin {Bacillus schlegelii [TaxId: 1484]} 95.47
d1jb0c_80 Photosystem I iron-sulfur protein PsaC {Synechococ 95.45
d1dura_55 Ferredoxin II {Peptostreptococcus asaccharolyticus 95.34
d1fxda_58 Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} 95.02
d2fdna_55 Ferredoxin II {Clostridium acidurici [TaxId: 1556] 94.93
d1h98a_77 Ferredoxin {Thermus thermophilus [TaxId: 274]} 94.49
d1bc6a_77 Ferredoxin {Bacillus schlegelii [TaxId: 1484]} 94.26
d1h98a_77 Ferredoxin {Thermus thermophilus [TaxId: 274]} 94.01
d7fd1a_106 Ferredoxin {Azotobacter vinelandii [TaxId: 354]} 93.91
d3c8ya383 Fe-only hydrogenase, second domain {Clostridium pa 93.76
d7fd1a_106 Ferredoxin {Azotobacter vinelandii [TaxId: 354]} 93.05
d1dura_55 Ferredoxin II {Peptostreptococcus asaccharolyticus 92.81
d3c7bb165 DsrB insert domain {Archaeoglobus fulgidus [TaxId: 92.14
d2c42a5117 Pyruvate-ferredoxin oxidoreductase, PFOR, domain V 91.86
d1nekb1132 Succinate dehydogenase {Escherichia coli [TaxId: 5 91.05
d1xera_103 Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} 90.34
d1hfel285 Fe-only hydrogenase larger subunit, N-domain {Desu 90.19
d1vlfn2195 Transhydroxylase beta subunit, BthL, N-terminal do 89.72
d1gtea5173 Dihydropyrimidine dehydrogenase, C-terminal domain 89.48
d2fug91154 NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus 88.69
d2bs2b1133 Fumarate reductase {Wolinella succinogenes [TaxId: 88.65
d1jb0c_80 Photosystem I iron-sulfur protein PsaC {Synechococ 88.62
d1rgva_80 Ferredoxin II {Thauera aromatica [TaxId: 59405]} 87.37
d1kqfb1244 Formate dehydrogenase N, iron-sulfur (beta) subuni 85.26
d1y5ib1509 Respiratory nitrate reductase 1 beta chain {Escher 82.73
d2fug34151 NADH-quinone oxidoreductase chain 3, Nqo3, domain 82.26
d3c8ya383 Fe-only hydrogenase, second domain {Clostridium pa 81.6
d1blua_80 Ferredoxin II {Chromatium vinosum [TaxId: 1049]} 80.44
d2bs2b1133 Fumarate reductase {Wolinella succinogenes [TaxId: 80.01
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Dihydropyrimidine dehydrogenase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.54  E-value=0.00015  Score=64.19  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=32.5

Q ss_pred             CCCCCCCccCCchhhcccccchhhhhccC-----------CCcccccccCccc
Q 013351           59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETVV  100 (444)
Q Consensus        59 ~~~~~lCtGCGaC~siCp~~~~~a~~~~~-----------~Gc~~c~~vCp~~  100 (444)
                      +++.++|++||.|..+||...+.++.+..           .||+.|..+||..
T Consensus       103 ~id~~~Ci~C~~C~~~Cp~~ai~~i~~~~~~~~~v~~~~C~gCg~C~~vCP~~  155 (173)
T d1gtea5         103 VIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPII  155 (173)
T ss_dssp             EECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEECTTCCCCCHHHHHCSST
T ss_pred             EEEchhCCCchHHHHhhhhCCEEEEEecCCCceEechhhCCCcChhHhhCCCC
Confidence            47899999999999999976554443332           2589999999963
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} Back     information, alignment and structure
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} Back     information, alignment and structure
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} Back     information, alignment and structure
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Back     information, alignment and structure
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} Back     information, alignment and structure
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} Back     information, alignment and structure
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} Back     information, alignment and structure
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} Back     information, alignment and structure
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} Back     information, alignment and structure
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} Back     information, alignment and structure
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} Back     information, alignment and structure
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Back     information, alignment and structure
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} Back     information, alignment and structure
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Back     information, alignment and structure