Citrus Sinensis ID: 013415

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MNKTSQQREKRQRMEDDASNHMDLVLVDEFESSPSVKKMRENGHASPSSQSKDSVIEGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEEEccccccccccccccccccccHHHHcccccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccEEEEEcccHHHHHccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHcEEEEEEccccEEEEEEEcEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHcccccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHHHHHHccccEEEcEcHHHHcccccccccccccccccccEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEccccEEEEEccccEEEEEEccccccccccEEEEccccccccHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcc
MNKTSQQREKRQRMEDDASNHMDLVLVdefesspsvkkmrenghaspssqskdsviegtsntnfvtnaernslpclvkiydcpeselkLNEVFEFVGVltldsdvmadkndqdessygfiedelvhlppekvprlhclihrkldvndflhsspmmepkpqlVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGklslnltclskesvsvfgnQVRLSvqnllpftqcipltvnylntaslapkkdyqtnrlipgvlqladgshliidetqletgtlnstGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSegksnivpadlvipfqpssaasfevvpaETLEAWRWYLASVRslphsiesDMQKVVESDLVAARQAdrslggqdLSRLLTMGRlmsasfgetslSLEHWQMVKELERLRRERLK
mnktsqqrekrqrmeddasnhmdlVLVDEFESSPSVKKMrenghaspssqskdsvieGTSNTnfvtnaernslPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETqletgtlnstGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAArqadrslggqdlSRLLTMGRLMSASfgetslslehwqMVKELERLRRERLK
MNKTSQQREKRQRMEDDASNHMDLVLVDEFESSPSVKKMRENGHASPSSQSKDSVIEGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKelerlrrerlK
***************************************************************FVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVM**********YGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLH*****************SLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLP********************************LLTMGRL**********SLEHWQ**************
******************************************************************NAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDV********************HLPPEKVPRLHCLIHRKLDVNDFLHSSP******QLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPS********PAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQA*****GQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRER**
*****************ASNHMDLVLVDEFES************************EGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK
***********************************************************SNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRE***
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MNKTSQQREKRQRMEDDASNHMDLVLVDEFESSPSVKKMRENGHASPSSQSKDSVIEGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q501D5589 Mini-chromosome maintenan yes no 0.988 0.743 0.620 1e-155
B5DG51626 Mini-chromosome maintenan N/A no 0.925 0.654 0.345 5e-60
Q803A6631 Mini-chromosome maintenan yes no 0.846 0.594 0.368 2e-58
Q28DV7627 Mini-chromosome maintenan yes no 0.950 0.671 0.330 6e-58
Q5ZJV4633 Mini-chromosome maintenan yes no 0.846 0.592 0.352 2e-57
A5PJM5642 Mini-chromosome maintenan yes no 0.841 0.580 0.348 9e-55
Q9BTE3642 Mini-chromosome maintenan yes no 0.828 0.571 0.353 1e-54
B1H268642 Mini-chromosome maintenan yes no 0.841 0.580 0.353 1e-54
Q8R3C0642 Mini-chromosome maintenan yes no 0.839 0.579 0.350 8e-54
Q9VM60605 Mini-chromosome maintenan yes no 0.891 0.652 0.304 7e-52
>sp|Q501D5|MCMBP_ARATH Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  547 bits (1410), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/445 (62%), Positives = 342/445 (76%), Gaps = 7/445 (1%)

Query: 1   MNKTSQQREKRQRMEDDASNHMDLVLVDEFESSPSVKKMRENGHASPSSQSKDSVIEGTS 60
           ++ T Q REKR R++++ ++ MD   ++   +    KKM+     S +S+S+   +  TS
Sbjct: 150 LDLTGQNREKRVRVDEEMTDSMDSSTLEAGRNGSPFKKMKVGEATSSASESQ---VPQTS 206

Query: 61  NTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFI 120
                T+A+  SLPCLVKIYD PES+LKLN+V EF+GVLT D  VM D +  DE+S    
Sbjct: 207 GIPPATSAD--SLPCLVKIYDSPESDLKLNDVVEFLGVLTFDPIVMMDTDTLDENSDALS 264

Query: 121 EDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMM-EPK-PQLVKETRESLLRHLTSILG 178
           E E V +P  KVPRLHCLIHRKL+   FLH S ++ EPK PQ+ KE RESL+++LT +LG
Sbjct: 265 EAESVQMPSGKVPRLHCLIHRKLETQHFLHGSSLLPEPKSPQIFKEIRESLMKYLTGLLG 324

Query: 179 NDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ 238
           ND IAA  +LLHLLS+VH R+DNVAVGKLSLNL  L+KES+S+FG Q+  ++++LLPFTQ
Sbjct: 325 NDHIAAQFLLLHLLSKVHGRVDNVAVGKLSLNLIHLNKESMSIFGTQLSGALKSLLPFTQ 384

Query: 239 CIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARL 298
            IPLT+ YLNTAS  PKKDY  NRL+PGVLQ+ADG+HLI+DET+L+ GTLNS GVENA L
Sbjct: 385 SIPLTIEYLNTASFGPKKDYGINRLMPGVLQIADGTHLILDETELQPGTLNSVGVENANL 444

Query: 299 LKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAE 358
           LKNL+E QKVEY+F+YYKMEM  DVQMLI SEGKSNI+PADLV+P QPS   S EV+  E
Sbjct: 445 LKNLLECQKVEYDFQYYKMEMATDVQMLIFSEGKSNIMPADLVLPLQPSQVNSLEVITPE 504

Query: 359 TLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASF 418
           T E WR YLA+ +SL HSI  ++Q+VVE+DLVAARQ DRSLG QDLSRLLTM R+MS S+
Sbjct: 505 TAETWRCYLATCKSLSHSIGQELQQVVENDLVAARQTDRSLGSQDLSRLLTMARMMSVSY 564

Query: 419 GETSLSLEHWQMVKELERLRRERLK 443
           GET+LSLEHWQMV ELERLR+ERLK
Sbjct: 565 GETTLSLEHWQMVLELERLRKERLK 589
Associated component of the MCM complex that acts as a regulator of DNA replication. Binds to the MCM complex during late S phase and may act by promoting the disassembly of the MCM complex from chromatin. Required for sister chromatid cohesion.
Arabidopsis thaliana (taxid: 3702)
>sp|B5DG51|MCMBP_SALSA Mini-chromosome maintenance complex-binding protein OS=Salmo salar GN=mcmbp PE=2 SV=1 Back     alignment and function description
>sp|Q803A6|MCMBP_DANRE Mini-chromosome maintenance complex-binding protein OS=Danio rerio GN=mcmbp PE=2 SV=2 Back     alignment and function description
>sp|Q28DV7|MCMBP_XENTR Mini-chromosome maintenance complex-binding protein OS=Xenopus tropicalis GN=mcmbp PE=2 SV=2 Back     alignment and function description
>sp|Q5ZJV4|MCMBP_CHICK Mini-chromosome maintenance complex-binding protein OS=Gallus gallus GN=MCMBP PE=2 SV=2 Back     alignment and function description
>sp|A5PJM5|MCMBP_BOVIN Mini-chromosome maintenance complex-binding protein OS=Bos taurus GN=MCMBP PE=2 SV=1 Back     alignment and function description
>sp|Q9BTE3|MCMBP_HUMAN Mini-chromosome maintenance complex-binding protein OS=Homo sapiens GN=MCMBP PE=1 SV=2 Back     alignment and function description
>sp|B1H268|MCMBP_RAT Mini-chromosome maintenance complex-binding protein OS=Rattus norvegicus GN=Mcmbp PE=2 SV=1 Back     alignment and function description
>sp|Q8R3C0|MCMBP_MOUSE Mini-chromosome maintenance complex-binding protein OS=Mus musculus GN=Mcmbp PE=2 SV=1 Back     alignment and function description
>sp|Q9VM60|MCMBP_DROME Mini-chromosome maintenance complex-binding protein OS=Drosophila melanogaster GN=CG3430 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
255559657 579 conserved hypothetical protein [Ricinus 0.966 0.739 0.724 0.0
392938145 591 E2F target protein 1 [Beta vulgaris] 0.993 0.744 0.647 1e-169
225448645 596 PREDICTED: mini-chromosome maintenance c 0.968 0.719 0.685 1e-166
449441256 590 PREDICTED: mini-chromosome maintenance c 0.961 0.722 0.655 1e-162
356507512 590 PREDICTED: mini-chromosome maintenance c 0.968 0.727 0.653 1e-161
297736511 588 unnamed protein product [Vitis vinifera] 0.950 0.715 0.681 1e-160
449514732 590 PREDICTED: mini-chromosome maintenance c 0.961 0.722 0.651 1e-160
356516245 589 PREDICTED: mini-chromosome maintenance c 0.968 0.728 0.644 1e-156
42569805 589 E2F target protein 1 [Arabidopsis thalia 0.988 0.743 0.620 1e-153
297823993 589 hypothetical protein ARALYDRAFT_483112 [ 0.988 0.743 0.620 1e-153
>gi|255559657|ref|XP_002520848.1| conserved hypothetical protein [Ricinus communis] gi|223539979|gb|EEF41557.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/443 (72%), Positives = 374/443 (84%), Gaps = 15/443 (3%)

Query: 1   MNKTSQQREKRQRMEDDASNHMDLVLVDEFESSPSVKKMRENGHASPSSQSKDSVIEGTS 60
           MN TSQQR+KR RM+ +A++H D                RE+GH SP S S+D    G  
Sbjct: 150 MNWTSQQRDKRGRMDFEAADHKD--------------SHREDGHPSPYSDSQDCKTAGAC 195

Query: 61  NTNF-VTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGF 119
           ++   +++  +NS PCLVKIYD PESELKLN+VFEFVGVLTLDSD+  +K+D D+ S  F
Sbjct: 196 SSKIMLSDINKNSFPCLVKIYDSPESELKLNDVFEFVGVLTLDSDLAMEKDDHDDLSNDF 255

Query: 120 IEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGN 179
            +D  +HLPP KVPRLHC+IHRKL V DFLHSSP++EPKP  +K  RE+LLRHLT+ILGN
Sbjct: 256 GDDVSIHLPPNKVPRLHCIIHRKLAVADFLHSSPIIEPKPHFIKAMREALLRHLTAILGN 315

Query: 180 DGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQC 239
           DG+AA  MLLHLLSRVHAR+DNVAVGKLSLNLTCLSKES+S+FG Q+ ++V+NLLPFT C
Sbjct: 316 DGVAATFMLLHLLSRVHARVDNVAVGKLSLNLTCLSKESISIFGTQLSIAVKNLLPFTSC 375

Query: 240 IPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLL 299
           IPLTV YLN +SLAPKKDYQ+NRL+PGVLQLADGSHLIIDETQLETGTLNS GV+NARLL
Sbjct: 376 IPLTVEYLNRSSLAPKKDYQSNRLMPGVLQLADGSHLIIDETQLETGTLNSVGVDNARLL 435

Query: 300 KNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAET 359
           KNL+EFQKVEY+F YYKMEM ADVQ+LILSEGKSNI+PAD++IPFQPSSA+S EVV  ++
Sbjct: 436 KNLIEFQKVEYDFTYYKMEMAADVQLLILSEGKSNILPADIIIPFQPSSASSSEVVVTDS 495

Query: 360 LEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFG 419
           L AWRWYLA+VRSLPHSIES++QKV+E+DLVAARQADRSLG QD SRLLTMGRL+SASFG
Sbjct: 496 LNAWRWYLATVRSLPHSIESEIQKVIENDLVAARQADRSLGSQDFSRLLTMGRLISASFG 555

Query: 420 ETSLSLEHWQMVKELERLRRERL 442
           ETSLSLEHWQMVKELER RRERL
Sbjct: 556 ETSLSLEHWQMVKELERQRRERL 578

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|392938145|gb|AFM94012.1| E2F target protein 1 [Beta vulgaris] Back     alignment and taxonomy information
>gi|225448645|ref|XP_002274437.1| PREDICTED: mini-chromosome maintenance complex-binding protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441256|ref|XP_004138398.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356507512|ref|XP_003522508.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Glycine max] Back     alignment and taxonomy information
>gi|297736511|emb|CBI25382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449514732|ref|XP_004164464.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516245|ref|XP_003526806.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Glycine max] Back     alignment and taxonomy information
>gi|42569805|ref|NP_181587.2| E2F target protein 1 [Arabidopsis thaliana] gi|75276320|sp|Q501D5.1|MCMBP_ARATH RecName: Full=Mini-chromosome maintenance complex-binding protein; Short=MCM-BP; Short=MCM-binding protein; AltName: Full=Protein E2F TARGET GENE 1 gi|63003830|gb|AAY25444.1| At2g40550 [Arabidopsis thaliana] gi|330254753|gb|AEC09847.1| E2F target protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297823993|ref|XP_002879879.1| hypothetical protein ARALYDRAFT_483112 [Arabidopsis lyrata subsp. lyrata] gi|297325718|gb|EFH56138.1| hypothetical protein ARALYDRAFT_483112 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2061833589 ETG1 "E2F target gene 1" [Arab 0.961 0.723 0.616 2.9e-135
ZFIN|ZDB-GENE-030131-9676631 mcmbp "minichromosome maintena 0.952 0.668 0.347 1.7e-57
UNIPROTKB|B5DG51626 mcmbp "Mini-chromosome mainten 0.943 0.667 0.352 1.4e-55
UNIPROTKB|F1NXK0634 MCMBP "Mini-chromosome mainten 0.821 0.574 0.347 3e-53
UNIPROTKB|Q5ZJV4633 MCMBP "Mini-chromosome mainten 0.821 0.575 0.347 3e-53
UNIPROTKB|Q28DV7627 mcmbp "Mini-chromosome mainten 0.925 0.653 0.329 8e-53
UNIPROTKB|Q7ZYP6626 mcmbp "Mini-chromosome mainten 0.936 0.662 0.324 3.1e-51
FB|FBgn0031875605 CG3430 [Drosophila melanogaste 0.941 0.689 0.294 8.5e-49
RGD|1306730642 RGD1306730 "similar to cDNA se 0.862 0.595 0.339 6e-48
MGI|MGI:1920977642 Mcmbp "MCM (minichromosome mai 0.862 0.595 0.342 7.7e-48
TAIR|locus:2061833 ETG1 "E2F target gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 267/433 (61%), Positives = 332/433 (76%)

Query:     1 MNKTSQQREKRQRMEDDASNHMDLVLVDEFESSPSVKKMRENGHASPSSQSKDSVIEGTS 60
             ++ T Q REKR R++++ ++ MD   ++   +    KKM+  G A+  S + +S +  TS
Sbjct:   150 LDLTGQNREKRVRVDEEMTDSMDSSTLEAGRNGSPFKKMKV-GEAT--SSASESQVPQTS 206

Query:    61 NTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFI 120
                  T+A+  SLPCLVKIYD PES+LKLN+V EF+GVLT D  VM D +  DE+S    
Sbjct:   207 GIPPATSAD--SLPCLVKIYDSPESDLKLNDVVEFLGVLTFDPIVMMDTDTLDENSDALS 264

Query:   121 EDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMM-EPK-PQLVKETRESLLRHLTSILG 178
             E E V +P  KVPRLHCLIHRKL+   FLH S ++ EPK PQ+ KE RESL+++LT +LG
Sbjct:   265 EAESVQMPSGKVPRLHCLIHRKLETQHFLHGSSLLPEPKSPQIFKEIRESLMKYLTGLLG 324

Query:   179 NDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQ 238
             ND IAA  +LLHLLS+VH R+DNVAVGKLSLNL  L+KES+S+FG Q+  ++++LLPFTQ
Sbjct:   325 NDHIAAQFLLLHLLSKVHGRVDNVAVGKLSLNLIHLNKESMSIFGTQLSGALKSLLPFTQ 384

Query:   239 CIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARL 298
              IPLT+ YLNTAS  PKKDY  NRL+PGVLQ+ADG+HLI+DET+L+ GTLNS GVENA L
Sbjct:   385 SIPLTIEYLNTASFGPKKDYGINRLMPGVLQIADGTHLILDETELQPGTLNSVGVENANL 444

Query:   299 LKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAE 358
             LKNL+E QKVEY+F+YYKMEM  DVQMLI SEGKSNI+PADLV+P QPS   S EV+  E
Sbjct:   445 LKNLLECQKVEYDFQYYKMEMATDVQMLIFSEGKSNIMPADLVLPLQPSQVNSLEVITPE 504

Query:   359 TLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASF 418
             T E WR YLA+ +SL HSI  ++Q+VVE+DLVAARQ DRSLG QDLSRLLTM R+MS S+
Sbjct:   505 TAETWRCYLATCKSLSHSIGQELQQVVENDLVAARQTDRSLGSQDLSRLLTMARMMSVSY 564

Query:   419 GETSLSLEHWQMV 431
             GET+LSLEHWQMV
Sbjct:   565 GETTLSLEHWQMV 577
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006260 "DNA replication" evidence=RCA;IMP
GO:0043601 "nuclear replisome" evidence=IPI
GO:0006301 "postreplication repair" evidence=IMP
GO:0007062 "sister chromatid cohesion" evidence=IGI;IMP
GO:0042555 "MCM complex" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009555 "pollen development" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0051302 "regulation of cell division" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
ZFIN|ZDB-GENE-030131-9676 mcmbp "minichromosome maintenance complex binding protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B5DG51 mcmbp "Mini-chromosome maintenance complex-binding protein" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXK0 MCMBP "Mini-chromosome maintenance complex-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJV4 MCMBP "Mini-chromosome maintenance complex-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q28DV7 mcmbp "Mini-chromosome maintenance complex-binding protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZYP6 mcmbp "Mini-chromosome maintenance complex-binding protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
FB|FBgn0031875 CG3430 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1306730 RGD1306730 "similar to cDNA sequence BC025641" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1920977 Mcmbp "MCM (minichromosome maintenance deficient) binding protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q501D5MCMBP_ARATHNo assigned EC number0.62020.98870.7436yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
pfam13615102 pfam13615, Racemase_4, Putative alanine racemase 2e-38
>gnl|CDD|222265 pfam13615, Racemase_4, Putative alanine racemase Back     alignment and domain information 
 Score =  134 bits (339), Expect = 2e-38
 Identities = 52/102 (50%), Positives = 69/102 (67%)

Query: 170 LRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLS 229
           L +LT+ LG D +AA  +LLHLLSRV++R D + +GK SLNLT   KES S    ++   
Sbjct: 1   LNYLTNALGGDALAAEYLLLHLLSRVYSRTDGLPLGKFSLNLTGCPKESASTLAERLSSV 60

Query: 230 VQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA 271
           +Q L+P    +PLT+  LN+  L PKKDY+TNRL+ GVLQL 
Sbjct: 61  LQQLVPAVHYLPLTLENLNSLRLVPKKDYETNRLVSGVLQLP 102

This is a family of eukaryotic proteins which are putatively alanine racemase. Length = 102

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
KOG2545543 consensus Conserved membrane protein [Function unk 100.0
COG1241682 MCM2 Predicted ATPase involved in replication cont 100.0
KOG0482721 consensus DNA replication licensing factor, MCM7 c 100.0
KOG0480 764 consensus DNA replication licensing factor, MCM6 c 100.0
PF13615102 Racemase_4: Putative alanine racemase 99.98
PTZ00111 915 DNA replication licensing factor MCM4; Provisional 99.96
KOG0481729 consensus DNA replication licensing factor, MCM5 c 99.96
KOG0478804 consensus DNA replication licensing factor, MCM4 c 99.96
KOG0479 818 consensus DNA replication licensing factor, MCM3 c 99.95
smart00350509 MCM minichromosome maintenance proteins. 99.94
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 99.94
KOG0477854 consensus DNA replication licensing factor, MCM2 c 99.93
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 98.65
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.48
PRK13407334 bchI magnesium chelatase subunit I; Provisional 98.15
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 98.14
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 98.1
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 98.08
PRK09862506 putative ATP-dependent protease; Provisional 98.07
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 97.79
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 97.75
PRK13531 498 regulatory ATPase RavA; Provisional 97.66
PRK13765 637 ATP-dependent protease Lon; Provisional 96.94
CHL00181287 cbbX CbbX; Provisional 96.55
TIGR02902 531 spore_lonB ATP-dependent protease LonB. Members of 95.87
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 95.67
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 95.55
COG1067 647 LonB Predicted ATP-dependent protease [Posttransla 95.21
PF13654509 AAA_32: AAA domain; PDB: 3K1J_B. 94.76
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 93.86
COG0714329 MoxR-like ATPases [General function prediction onl 92.67
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 91.99
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 91.83
COG0606490 Predicted ATPase with chaperone activity [Posttran 91.59
PRK10787 784 DNA-binding ATP-dependent protease La; Provisional 90.69
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 89.65
TIGR02329526 propionate_PrpR propionate catabolism operon regul 89.39
PF1333596 Mg_chelatase_2: Magnesium chelatase, subunit ChlI 87.92
PRK11608326 pspF phage shock protein operon transcriptional ac 86.79
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 86.72
PRK15424538 propionate catabolism operon regulatory protein Pr 86.43
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 84.42
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 83.59
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 82.35
PRK05022509 anaerobic nitric oxide reductase transcription reg 80.67
>KOG2545 consensus Conserved membrane protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-96  Score=739.85  Aligned_cols=350  Identities=45%  Similarity=0.716  Sum_probs=318.1

Q ss_pred             cCCC-CCCcEEEEEEcCCCCCcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEEEEeecC
Q 013415           67 NAER-NSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDV  145 (443)
Q Consensus        67 n~P~-~~~~clVKvYd~~~~~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~~~~l~~  145 (443)
                      ++|+ ++.||+||||++++.++|+||+|||||||+++|.+...+..   ++....+.+..|             .+.++|
T Consensus       192 Plps~ds~aClVKvYe~~et~~qvnd~vdf~Gilsvdp~la~ld~l---d~~~~ae~qa~h-------------vq~lqh  255 (543)
T KOG2545|consen  192 PLPSNDSGACLVKVYEGMETKVQVNDAVDFIGILSVDPELASLDGL---DCLHMAEFQAYH-------------VQALQH  255 (543)
T ss_pred             CCCCCCCCceEEEEecCcccceehhhhhhhheeeecChhhhcCCCc---ccccHHHHHHHH-------------HhccCC
Confidence            3688 99999999999988789999999999999999988332211   111222222222             344444


Q ss_pred             CCcCCCCCCCCCCcchh-HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHH
Q 013415          146 NDFLHSSPMMEPKPQLV-KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGN  224 (443)
Q Consensus       146 ~~~~~~~~~~~~~~~~~-~~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~  224 (443)
                      .++.        .+.-+ .++|++|+.||+.+|+||.+|||||||||+|+||+|++++++|+|+|||+|||++  +.|+.
T Consensus       256 ~nPl--------lp~ilr~el~~~Llkylt~~Lg~d~iAAeyLllhLlStV~~R~d~l~iGkftlNL~ncpke--s~f~t  325 (543)
T KOG2545|consen  256 PNPL--------LPEILRKELRPKLLKYLTKVLGNDNIAAEYLLLHLLSTVYHRTDGLVIGKFTLNLTNCPKE--SIFVT  325 (543)
T ss_pred             CCcc--------chHHHHHHhhHHHHHHHHHhhcCchHHHHHHHHHHHHHhhccccceEeeeeEEeecCCCch--hHHHH
Confidence            3221        11222 5678999999999999999999999999999999999999999999999999976  69999


Q ss_pred             HHHHHHHhhcCceEEEeeehhhhhcCCCcccccCCCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHHHHHHHHH
Q 013415          225 QVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLME  304 (443)
Q Consensus       225 ~L~~~l~~L~P~s~~lpltl~~LN~~~l~P~kD~~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~aL~~li~  304 (443)
                      +|+++|+.|+|+++++|||+++||+++|.|+|||++|||.+|+||||+|||||||||.|++|+|+..||+|+++|++||+
T Consensus       326 qLy~iL~~Llpas~~~pmtie~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~  405 (543)
T KOG2545|consen  326 QLYSILRPLLPASVIQPMTIEELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLIS  405 (543)
T ss_pred             HHHHHHHHhchhhheeeeeHHhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCeeeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCCCCCCCChhhHHHHHHHHHHhccCCCcCChhHHHH
Q 013415          305 FQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKV  384 (443)
Q Consensus       305 ~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp~D~~vpl~~~~~~~~~~~~~~~L~~~R~Yl~~~r~~~~~i~ee~~~~  384 (443)
                      +|+|.|||+||+|++++||+|+|+|+|+| |+|+|+.++++|+....++.++++++++||.|++.+|.+.++|++|++++
T Consensus       406 ~Qkl~ydfqyyqme~~~nv~vlIlSeGrs-ilPADl~i~lqp~~v~~le~~tps~l~q~rcyltt~r~l~~nIsee~t~~  484 (543)
T KOG2545|consen  406 QQKLTYDFQYYQMEVHSNVRVLILSEGRS-ILPADLGIRLQPDSVDTLEFPTPSDLLQFRCYLTTMRNLRANISEEMTDY  484 (543)
T ss_pred             ccccceecceEEEEeccCceEEEeeCCcc-cCcccccccCCCCCCCccccCChhHHHHHHHHHHHHHhhccCccHHHHHH
Confidence            99999999999999999999999999999 99999999999998877888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhcC
Q 013415          385 VESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK  443 (443)
Q Consensus       385 Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a~~LE~~R~~Rl~  443 (443)
                      ||+|||+|||.|+.++++|||++|++||+++.|+|++++++|+|++|++||+.|+.|||
T Consensus       485 iq~dfV~mRq~n~~snaddLs~lLv~sRlls~S~G~ttlsre~wq~a~ele~lrr~rlq  543 (543)
T KOG2545|consen  485 IQSDFVSMRQYNKESNADDLSLLLVCSRLLSKSFGRTTLSREDWQAARELENLRRVRLQ  543 (543)
T ss_pred             HHHHHHHHHhhCcccchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999997

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] Back     alignment and domain information
>PF13615 Racemase_4: Putative alanine racemase Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 67/439 (15%), Positives = 134/439 (30%), Gaps = 122/439 (27%)

Query: 20  NHMDL--------------VLVDEFESSPSVKKMRENGHASPSSQSKDSVIEGTSNTNFV 65
           +HMD               V  D F  +   K +++   +  S +  D +I         
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-------- 56

Query: 66  TNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELV 125
               ++++   ++++    S+ +   V +FV              +    +Y F+   + 
Sbjct: 57  ---SKDAVSGTLRLFWTLLSKQE-EMVQKFVE-------------EVLRINYKFLMSPIK 99

Query: 126 HLP--PEKVPRLHCLIHRKL--DVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDG 181
                P  + R++     +L  D   F   +     + Q   + R++LL  L        
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLE-LRP---AKN 152

Query: 182 IAAHLMLLHLLSRVHARIDNVAVGKLSL-NLTCLSKESVSVFGNQVR-LSV--------- 230
           +    +L                GK  +    CLS +       ++  L++         
Sbjct: 153 VLIDGVL--------------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 231 ----QNLL-----PFTQCIPLTVNY-LNTASLAPK-KDYQTNRLIPGVLQLADGSHLIID 279
               Q LL      +T     + N  L   S+  + +    ++     L       L++ 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-------LVLL 251

Query: 280 ETQLETGTLNSTGVENARLL-----KNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKS- 333
             Q      N+  + + ++L     K + +F           + +      L   E KS 
Sbjct: 252 NVQ-NAKAWNAFNL-SCKILLTTRFKQVTDFLSAA---TTTHISLDHHSMTLTPDEVKSL 306

Query: 334 -----NIVPADL------VIPFQPSS-AASFEVVPAETLEAWRWYLASVRSLPHSIESDM 381
                +  P DL        P + S  A S     A T + W+        L   IES +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCD--KLTTIIESSL 363

Query: 382 QKVVESDLVAARQADRSLG 400
             +  ++    R+    L 
Sbjct: 364 NVLEPAEY---RKMFDRLS 379

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
3f8t_A506 Predicted ATPase involved in replication control, 99.9
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.79
3nbx_X 500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 98.21
2r44_A331 Uncharacterized protein; putative ATPase, structur 98.2
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 98.07
3k1j_A 604 LON protease, ATP-dependent protease LON; ATP-bind 97.92
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 95.44
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 94.93
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 93.51
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 92.93
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 91.07
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 90.42
2vl6_A268 SSO MCM N-TER, minichromosome maintenance protein 88.08
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 87.71
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 86.88
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 86.76
1ltl_A279 DNA replication initiator (CDC21/CDC54); HET: DNA; 86.18
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 86.14
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 84.72
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 84.04
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 83.83
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 80.9
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
Probab=99.90  E-value=5.4e-23  Score=215.26  Aligned_cols=303  Identities=17%  Similarity=0.155  Sum_probs=223.2

Q ss_pred             CCCCCCcEEEEEE--cCCCC------CcccCcEEEEEEEeecCcccccccCCCCCCccccchhhhccCCCCCcceEeEEE
Q 013415           68 AERNSLPCLVKIY--DCPES------ELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLI  139 (443)
Q Consensus        68 ~P~~~~~clVKvY--d~~~~------~lKlNdvve~vGILs~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlH~i~  139 (443)
                      +|.+..|..+.|+  |+..+      .+|+||.|+++||+...                               .|+|.+
T Consensus       128 ~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~-------------------------------~l~a~~  176 (506)
T 3f8t_A          128 VRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA-------------------------------TLDALE  176 (506)
T ss_dssp             EEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT-------------------------------EEEEEE
T ss_pred             CCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe-------------------------------EEEEEE
Confidence            6788888875555  66667      89999999999998542                               234443


Q ss_pred             EEeecCCCcCCCCCCCCCCcchhH--------HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeeeeeeeEe
Q 013415          140 HRKLDVNDFLHSSPMMEPKPQLVK--------ETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNL  211 (443)
Q Consensus       140 ~~~l~~~~~~~~~~~~~~~~~~~~--------~iR~~Ll~~La~~l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl  211 (443)
                      .++-..  +-..    .......+        ++.+.|...|++ +.|...++..|+|.|++++..     ..|++++.|
T Consensus       177 i~~~~~--~~~~----~~t~ed~~~i~~l~~~~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-----~rgdihVLL  244 (506)
T 3f8t_A          177 VHKKDP--IPEV----HPDPAELEEFRELADKDPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-----NSERLHVLL  244 (506)
T ss_dssp             EEEECS--SCCC----CCCHHHHHHHHHHHHSCHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-----GGGCCCEEE
T ss_pred             EEEcCc--cccC----CCCHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-----cCCceeEEE
Confidence            333111  1000    00111111        346789999999 999999999999999999754     679999999


Q ss_pred             ecCCCcchhhhHHHHHHHH-HhhcCceEEEeee---hhhhhcCCCcccccCCCC-cccccceEeeCCcEEEEecCCCCcC
Q 013415          212 TCLSKESVSVFGNQVRLSV-QNLLPFTQCIPLT---VNYLNTASLAPKKDYQTN-RLIPGVLQLADGSHLIIDETQLETG  286 (443)
Q Consensus       212 ~~~p~~~~~~~~~~L~~~l-~~L~P~s~~lplt---l~~LN~~~l~P~kD~~~~-~L~sG~LQLa~gT~lviDEt~L~~G  286 (443)
                      .|.|+    + +++|.+++ ..++|+..|.+..   ..+|+..    .++. +| .+++|.+.||+||.|++||..    
T Consensus       245 ~G~PG----t-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s----~r~~-tG~~~~~G~l~LAdgGvl~lDEIn----  310 (506)
T 3f8t_A          245 AGYPV----V-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV----LKED-RGWALRAGAAVLADGGILAVDHLE----  310 (506)
T ss_dssp             ESCHH----H-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE----EEES-SSEEEEECHHHHTTTSEEEEECCT----
T ss_pred             ECCCC----h-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE----EEcC-CCcccCCCeeEEcCCCeeehHhhh----
Confidence            99997    8 99999999 9999999998763   2345543    3443 44 789999999999999999995    


Q ss_pred             cccccchhHHHHHHHHHHhCeeeeeecccceeeeeccceEEeecCCCC----------ccc------CceeeeeccCCCC
Q 013415          287 TLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN----------IVP------ADLVIPFQPSSAA  350 (443)
Q Consensus       287 ~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~----------~lp------~D~~vpl~~~~~~  350 (443)
                         +..-+-..+|.++|++|+|... .   +.+|++..++.-..-...          -+|      ||+.+.+.+..+.
T Consensus       311 ---~~~~~~qsaLlEaMEe~~VtI~-G---~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~  383 (506)
T 3f8t_A          311 ---GAPEPHRWALMEAMDKGTVTVD-G---IALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRP  383 (506)
T ss_dssp             ---TCCHHHHHHHHHHHHHSEEEET-T---EEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC----
T ss_pred             ---hCCHHHHHHHHHHHhCCcEEEC-C---EEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCCh
Confidence               4445568999999999999877 2   266666655554432110          111      6777766544322


Q ss_pred             CC--CCC-ChhhHHHHHHHHHHhc--cCCCcCChhHHHHHHHHHHHHhhcC----------CCCCHHHHHHHHHHHHHHH
Q 013415          351 SF--EVV-PAETLEAWRWYLASVR--SLPHSIESDMQKVVESDLVAARQAD----------RSLGGQDLSRLLTMGRLMS  415 (443)
Q Consensus       351 ~~--~~~-~~~~L~~~R~Yl~~~r--~~~~~i~ee~~~~Iq~dFV~~Rq~~----------~~it~~~L~~~L~LaRllA  415 (443)
                      ..  +.. .....+.+|+|+.+||  ...+.+++++.++|.+.|+++|+..          -.+|.+.+..|+++|+++|
T Consensus       384 e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A  463 (506)
T 3f8t_A          384 GEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHA  463 (506)
T ss_dssp             ----------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             hHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHH
Confidence            21  111 1123578999999999  4589999999999999999999841          1589999999999999999


Q ss_pred             HHcCCCCCCHHHHHHHHHH
Q 013415          416 ASFGETSLSLEHWQMVKEL  434 (443)
Q Consensus       416 lS~G~~~lt~e~W~~a~~L  434 (443)
                      +.+|++.++.||.+.|++|
T Consensus       464 ~L~gR~~V~~eDV~~Ai~L  482 (506)
T 3f8t_A          464 RMRLSDDVEPEDVDIAAEL  482 (506)
T ss_dssp             HHTTCSEECHHHHHHHHHH
T ss_pred             HHcCcCCCCHHHHHHHHHH
Confidence            9999999999999999988
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 98.79
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 92.6
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 90.93
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 84.34
d1ltla_239 DNA replication initiator (cdc21/cdc54) N-terminal 82.81
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.79  E-value=1.5e-07  Score=91.04  Aligned_cols=231  Identities=15%  Similarity=0.068  Sum_probs=150.4

Q ss_pred             hcCcHHHHHHHHHHHhcccccccCceeeeeeeeEeecCCCcchhhhHHHHHHHHHhhcCceEEEeeehhhhhcCC-----
Q 013415          177 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTAS-----  251 (443)
Q Consensus       177 l~GD~laAeyLLL~L~S~V~~r~d~~~lG~~sLnl~~~p~~~~~~~~~~L~~~l~~L~P~s~~lpltl~~LN~~~-----  251 (443)
                      +.|-+.+...|++.+++.          |-=++.|.|.||    +.+++|.+.+..++|....+....  .+...     
T Consensus         9 I~Gq~~~kral~laa~~~----------~~h~vLl~G~pG----~GKT~lar~~~~iLp~~~~~~~~~--~~~~~~~~~~   72 (333)
T d1g8pa_           9 IVGQEDMKLALLLTAVDP----------GIGGVLVFGDRG----TGKSTAVRALAALLPEIEAVEGCP--VSSPNVEMIP   72 (333)
T ss_dssp             SCSCHHHHHHHHHHHHCG----------GGCCEEEECCGG----GCTTHHHHHHHHHSCCEEEETTCT--TCCSSGGGSC
T ss_pred             ccCcHHHHHHHHHHHhcc----------CCCeEEEECCCC----ccHHHHHHHHHHhCCCchhhccCc--cccCcccccc
Confidence            457888889888888742          112789999998    789999999999999876653210  00000     


Q ss_pred             -------------Ccccc-------------------cC--CCCcccccceEeeCCcEEEEecCCCCcCcccccchhHHH
Q 013415          252 -------------LAPKK-------------------DY--QTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENAR  297 (443)
Q Consensus       252 -------------l~P~k-------------------D~--~~~~L~sG~LQLa~gT~lviDEt~L~~G~L~~~Gv~N~~  297 (443)
                                   ..|..                   ..  .....++|.+-+|+||.++|||..       ...-+-+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~-------~~~~~~~~  145 (333)
T d1g8pa_          73 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECN-------LLEDHIVD  145 (333)
T ss_dssp             TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGG-------GSCHHHHH
T ss_pred             chhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHH-------HHHHHHHH
Confidence                         00100                   00  112577899999999999999995       33334589


Q ss_pred             HHHHHHHhCeeeeeecccceeeeeccceEEeecCCCCccc------CceeeeeccCCCCC--CC--------CCCh-hhH
Q 013415          298 LLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVP------ADLVIPFQPSSAAS--FE--------VVPA-ETL  360 (443)
Q Consensus       298 aL~~li~~Q~v~YdF~y~~~e~~~di~vliLS~gKS~~lp------~D~~vpl~~~~~~~--~~--------~~~~-~~L  360 (443)
                      +|.+.|+++++...=..+.+.+|++.-++.-+...-.-+|      +|+.+.+....+..  .+        ...+ ...
T Consensus       146 aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (333)
T d1g8pa_         146 LLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFL  225 (333)
T ss_dssp             HHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHHH
Confidence            9999999999998655667888888755554432111111      56666554322111  00        0000 001


Q ss_pred             -------HHHHHHHHHhc--cCCCcCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 013415          361 -------EAWRWYLASVR--SLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMV  431 (443)
Q Consensus       361 -------~~~R~Yl~~~r--~~~~~i~ee~~~~Iq~dFV~~Rq~~~~it~~~L~~~L~LaRllAlS~G~~~lt~e~W~~a  431 (443)
                             ..++..+..++  .....+++++...+.+.+++.+    ..+.+-.++++++||.+|...|++.++.+|.+.|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~----~~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a  301 (333)
T d1g8pa_         226 EEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG----SDGLRGELTLLRSARALAALEGATAVGRDHLKRV  301 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS----SCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence                   12233333332  2356788888877777666543    3478999999999999999999999999999998


Q ss_pred             HHH
Q 013415          432 KEL  434 (443)
Q Consensus       432 ~~L  434 (443)
                      ..|
T Consensus       302 ~~l  304 (333)
T d1g8pa_         302 ATM  304 (333)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure