Citrus Sinensis ID: 013441

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MASIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTR
ccccccccccccEEEccccccccccccccccHHHHcccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccEEEEEcccccEEEEcEEEEEEEEEEccccccEEEEccccccccccccccccccccccEEEccccccccHHHHHHHHHHcccccccEEEccccccccccccccccccccHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccc
ccHHHccccHcEEcccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEccccccccEHHHHHHHHHHHHHHHHcccEEEEcEcccccccccccHHHHHHHHHHHccccccEEcccEccccccEHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHccccccHHHHccHHHHHHHHHcccccEEEEccccccEEEEEEcccEEEEEEHHHccccEEEcccccEcHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHcccccEEEEEcccEcccccEccccccccEHHHHHHccccHHHHHHHHHcccEccccccccccHHHHHHHccHHHEcccccEccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcc
masivaatpwsrirtitklelappiflqssvyyckRRRFSVAAslstntnkvdgqvrvrfapsptgnlhvggARTALFNYLFARSKGGKFVLRIEdtdlerstkESEEAVLQDLSwlgldwdegpgvggdygpyrqsernSLYKQYADKLLEsghvyrcfcsNEELEKMKEIAklkqlppvytgkwatatDAEVQKELergtpytyrfrvpkggslkisdlIRGEVSWNLDTLGDFVImrsngqpvynfcvtvddATMAISHVIRAEEHLPNTLRQALIYKALgfsmpyfaHVSLilapdrsklskrhgatsvgqfremgylPQAMVNYLALlgwgdgtenEFFTLKQLVEKFTIERvnksgaifdstklrwmngqhlraipsnELTKLIGERwkstgilteskgpfVDEAIQLLKDgidlvpdsdKALSNllsyplrdtltr
masivaatpwsrirtitklelappiFLQSSVYYCKRRRFSVaaslstntnkvdgqvrVRFApsptgnlhvgGARTALFNYLFARSKGGKFVLRIEDTdlerstkeseEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKlkqlppvytgkwatatdaevqkelergtpytyrfrvpkggslkisdliRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIraeehlpnTLRQALIYKALGFSMPYFAHVSLILapdrsklskRHGATsvgqfremgyLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTiervnksgaifdstklrwmnGQHLRAIPSNELTKLIGERWKSTgilteskgpFVDEAIQLLKDGIDlvpdsdkalsnllsyplrdtltr
MASIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTR
***IVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED************AVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR*******GATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPD*******************
********PWSRIRTITKLELAPPIFL*****************************RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELE****************GKWATA************TPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDT***
MASIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTD***********VLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTR
****VAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNT**VDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLR*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MASIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q9FEA2 570 Glutamate--tRNA ligase, c yes no 0.986 0.766 0.829 0.0
Q43794 569 Glutamate--tRNA ligase, c N/A no 0.981 0.764 0.800 0.0
Q43768 560 Glutamate--tRNA ligase, c N/A no 0.911 0.721 0.796 0.0
Q3A9N9480 Glutamate--tRNA ligase OS yes no 0.810 0.747 0.551 1e-112
Q0AYF8 495 Glutamate--tRNA ligase 1 yes no 0.817 0.731 0.516 1e-110
A4XLI3482 Glutamate--tRNA ligase 2 yes no 0.821 0.755 0.509 1e-110
A4XHE0485 Glutamate--tRNA ligase 1 no no 0.826 0.754 0.508 1e-109
A5D5L8480 Glutamate--tRNA ligase OS yes no 0.731 0.675 0.586 1e-109
A4J0Y7482 Glutamate--tRNA ligase OS yes no 0.785 0.721 0.534 1e-109
B0TBU3 496 Glutamate--tRNA ligase OS yes no 0.783 0.699 0.527 1e-106
>sp|Q9FEA2|SYE_ARATH Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At5g64050 PE=1 SV=1 Back     alignment and function desciption
 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/445 (82%), Positives = 402/445 (90%), Gaps = 8/445 (1%)

Query: 1   MASIVAATPWSRIRTITKLELAPPIFL---QSSVYYCKRRRFSVAASLSTNTNKVDGQVR 57
           MAS+V  TPW R+R++ +L    P FL   QSS++YC RR F+V A  ST  N   G VR
Sbjct: 1   MASLVYGTPWLRVRSLPEL---APAFLRRRQSSLFYCSRRSFAVVAC-STPVNN-GGSVR 55

Query: 58  VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWL 117
           VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERST+ESE AVLQDLSWL
Sbjct: 56  VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEAAVLQDLSWL 115

Query: 118 GLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177
           GLDWDEGPGV GD+GPYRQSERN+LYKQYA+KLLESGHVYRCFCS+EEL KMKE AKLKQ
Sbjct: 116 GLDWDEGPGVSGDFGPYRQSERNALYKQYAEKLLESGHVYRCFCSSEELVKMKENAKLKQ 175

Query: 178 LPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFV 237
           LPPVYTGKWATA+DAE+++ELE+GTP+TYRFRVPK GSLKI+DLIRGEV WNLDTLGDFV
Sbjct: 176 LPPVYTGKWATASDAEIEQELEKGTPFTYRFRVPKEGSLKINDLIRGEVCWNLDTLGDFV 235

Query: 238 IMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLIL 297
           +MRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL F MP FAHVSLIL
Sbjct: 236 VMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALKFPMPQFAHVSLIL 295

Query: 298 APDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIER 357
           APDRSKLSKRHGATSVGQ+REMGYLPQ MVNYLALLGWGDGTENEFFTL+ LVEKF+IER
Sbjct: 296 APDRSKLSKRHGATSVGQYREMGYLPQGMVNYLALLGWGDGTENEFFTLEDLVEKFSIER 355

Query: 358 VNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKD 417
           VNKSGAIFDSTKLRWMNGQHLRA+P+ +LTKL+GERWKS GILTES+G FV+EA++LLKD
Sbjct: 356 VNKSGAIFDSTKLRWMNGQHLRALPNEKLTKLVGERWKSAGILTESEGSFVNEAVELLKD 415

Query: 418 GIDLVPDSDKALSNLLSYPLRDTLT 442
           GI+LV DSDK L NLLSYPL  TL 
Sbjct: 416 GIELVTDSDKVLLNLLSYPLHATLA 440
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7
>sp|Q43794|SYE_TOBAC Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q43768|SYE_HORVU Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|Q3A9N9|SYE_CARHZ Glutamate--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gltX PE=3 SV=1 Back     alignment and function description
>sp|Q0AYF8|SYE1_SYNWW Glutamate--tRNA ligase 1 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=gltX1 PE=3 SV=1 Back     alignment and function description
>sp|A4XLI3|SYE2_CALS8 Glutamate--tRNA ligase 2 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=gltX2 PE=3 SV=1 Back     alignment and function description
>sp|A4XHE0|SYE1_CALS8 Glutamate--tRNA ligase 1 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=gltX1 PE=3 SV=1 Back     alignment and function description
>sp|A5D5L8|SYE_PELTS Glutamate--tRNA ligase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=gltX PE=3 SV=1 Back     alignment and function description
>sp|A4J0Y7|SYE_DESRM Glutamate--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1) GN=gltX PE=3 SV=1 Back     alignment and function description
>sp|B0TBU3|SYE_HELMI Glutamate--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=gltX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
297797409 570 ATERS/ERS/OVA3 [Arabidopsis lyrata subsp 0.986 0.766 0.826 0.0
449454319 573 PREDICTED: glutamate--tRNA ligase, chlor 0.981 0.759 0.832 0.0
15237594 570 glutamyl-tRNA synthetase [Arabidopsis th 0.986 0.766 0.829 0.0
225428342 566 PREDICTED: glutamyl-tRNA synthetase, chl 0.986 0.772 0.846 0.0
224104805 574 predicted protein [Populus trichocarpa] 0.979 0.756 0.828 0.0
15809895 570 AT5g64050/MHJ24_3 [Arabidopsis thaliana] 0.986 0.766 0.826 0.0
147806055 555 hypothetical protein VITISV_039082 [Viti 0.986 0.787 0.841 0.0
255583454 577 glutamyl-tRNA synthetase 1, 2, putative 0.984 0.755 0.812 0.0
2500981 569 RecName: Full=Glutamate--tRNA ligase, ch 0.981 0.764 0.800 0.0
356520709 562 PREDICTED: glutamyl-tRNA synthetase, chl 0.972 0.766 0.824 0.0
>gi|297797409|ref|XP_002866589.1| ATERS/ERS/OVA3 [Arabidopsis lyrata subsp. lyrata] gi|297312424|gb|EFH42848.1| ATERS/ERS/OVA3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/445 (82%), Positives = 401/445 (90%), Gaps = 8/445 (1%)

Query: 1   MASIVAATPWSRIRTITKLELAPPIFL---QSSVYYCKRRRFSVAASLSTNTNKVDGQVR 57
           MAS+V  TPW R+R++ +L    P FL   QSS++YC RR F+V A  S   N   G VR
Sbjct: 1   MASLVYGTPWLRVRSLPEL---APAFLRRRQSSLFYCSRRSFAVVACSSPVNN--GGSVR 55

Query: 58  VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWL 117
           VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERST+ESE AVLQDLSWL
Sbjct: 56  VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEAAVLQDLSWL 115

Query: 118 GLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177
           GLDWDEGPGV GD+GPYRQSERN+LYKQYA+KLLESGHVYRCFCS+EEL KMKEIAKLKQ
Sbjct: 116 GLDWDEGPGVSGDFGPYRQSERNALYKQYAEKLLESGHVYRCFCSSEELVKMKEIAKLKQ 175

Query: 178 LPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFV 237
           LPPVYTGKWATA+D+E+++ELE+GTP+TYRFRVPK GSLKI+DLIRGEV WNLDTLGDFV
Sbjct: 176 LPPVYTGKWATASDSEIEQELEKGTPFTYRFRVPKEGSLKINDLIRGEVCWNLDTLGDFV 235

Query: 238 IMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLIL 297
           +MRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL F MP FAHVSLIL
Sbjct: 236 VMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPQFAHVSLIL 295

Query: 298 APDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIER 357
           APDRSKLSKRHGATSVGQ+REMGYLPQ MVNYLALLGWGDGTENEFFTL++LVEKF+IER
Sbjct: 296 APDRSKLSKRHGATSVGQYREMGYLPQGMVNYLALLGWGDGTENEFFTLEELVEKFSIER 355

Query: 358 VNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKD 417
           VNKSGAIFDSTKLRWMNGQHLRA+P  +L KL+GERWKS GILTES+G FVDEA++LLKD
Sbjct: 356 VNKSGAIFDSTKLRWMNGQHLRALPKEKLAKLVGERWKSAGILTESEGSFVDEAVELLKD 415

Query: 418 GIDLVPDSDKALSNLLSYPLRDTLT 442
           GI+LV DSDK L NLLSYPL  TL 
Sbjct: 416 GIELVTDSDKVLLNLLSYPLHATLA 440

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449454319|ref|XP_004144903.1| PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449473003|ref|XP_004153756.1| PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449517148|ref|XP_004165608.1| PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15237594|ref|NP_201210.1| glutamyl-tRNA synthetase [Arabidopsis thaliana] gi|30316183|sp|Q9FEA2.1|SYE_ARATH RecName: Full=Glutamate--tRNA ligase, chloroplastic/mitochondrial; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; Flags: Precursor gi|11078546|gb|AAG29098.1|AF241841_1 Glu-tRNA synthetase [Arabidopsis thaliana] gi|10176953|dbj|BAB10273.1| glutamate-tRNA ligase [Arabidopsis thaliana] gi|332010451|gb|AED97834.1| glutamyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225428342|ref|XP_002283154.1| PREDICTED: glutamyl-tRNA synthetase, chloroplastic/mitochondrial [Vitis vinifera] gi|297744457|emb|CBI37719.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104805|ref|XP_002313571.1| predicted protein [Populus trichocarpa] gi|222849979|gb|EEE87526.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15809895|gb|AAL06875.1| AT5g64050/MHJ24_3 [Arabidopsis thaliana] gi|17064968|gb|AAL32638.1| glutamate-tRNA ligase [Arabidopsis thaliana] gi|21387183|gb|AAM47995.1| glutamate-tRNA ligase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147806055|emb|CAN72214.1| hypothetical protein VITISV_039082 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255583454|ref|XP_002532486.1| glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis] gi|223527811|gb|EEF29910.1| glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|2500981|sp|Q43794.1|SYE_TOBAC RecName: Full=Glutamate--tRNA ligase, chloroplastic/mitochondrial; AltName: Full=Glutamyl-tRNA synthetase; Short=GluRS; Flags: Precursor gi|603867|emb|CAA58506.1| glutamate--tRNA ligase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356520709|ref|XP_003529003.1| PREDICTED: glutamyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2164381 570 ERS "glutamate tRNA synthetase 0.984 0.764 0.835 1.2e-198
TIGR_CMR|CHY_2340480 CHY_2340 "glutamyl-tRNA synthe 0.810 0.747 0.551 1.4e-105
TIGR_CMR|GSU_1219466 GSU_1219 "glutamyl-tRNA synthe 0.808 0.768 0.485 6.5e-90
TIGR_CMR|DET_1365484 DET_1365 "glutamyl-tRNA synthe 0.810 0.741 0.478 6.7e-88
TIGR_CMR|BA_0086485 BA_0086 "glutamyl-tRNA synthet 0.738 0.674 0.474 1.9e-83
GENEDB_PFALCIPARUM|MAL13P1.281 574 MAL13P1.281 "glutamate--tRNA l 0.891 0.688 0.386 2.2e-82
UNIPROTKB|Q8IDD3 574 MAL13P1.281 "Glutamate--tRNA l 0.891 0.688 0.386 2.2e-82
UNIPROTKB|P04805471 gltX "glutamyl-tRNA synthetase 0.781 0.734 0.448 1.2e-81
TIGR_CMR|VC_2214474 VC_2214 "glutamyl-tRNA synthet 0.785 0.734 0.441 8.5e-81
DICTYBASE|DDB_G0271906 584 mgluS "glutamate-tRNA ligase" 0.726 0.551 0.418 5.9e-78
TAIR|locus:2164381 ERS "glutamate tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1923 (682.0 bits), Expect = 1.2e-198, P = 1.2e-198
 Identities = 371/444 (83%), Positives = 403/444 (90%)

Query:     1 MASIVAATPWSRIRTITKLELAPPIFL---QSSVYYCKRRRFSVAASLSTNTNKVDGQVR 57
             MAS+V  TPW R+R++   ELAP  FL   QSS++YC RR F+V A  ST  N   G VR
Sbjct:     1 MASLVYGTPWLRVRSLP--ELAPA-FLRRRQSSLFYCSRRSFAVVAC-STPVNN-GGSVR 55

Query:    58 VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWL 117
             VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERST+ESE AVLQDLSWL
Sbjct:    56 VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEAAVLQDLSWL 115

Query:   118 GLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177
             GLDWDEGPGV GD+GPYRQSERN+LYKQYA+KLLESGHVYRCFCS+EEL KMKE AKLKQ
Sbjct:   116 GLDWDEGPGVSGDFGPYRQSERNALYKQYAEKLLESGHVYRCFCSSEELVKMKENAKLKQ 175

Query:   178 LPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFV 237
             LPPVYTGKWATA+DAE+++ELE+GTP+TYRFRVPK GSLKI+DLIRGEV WNLDTLGDFV
Sbjct:   176 LPPVYTGKWATASDAEIEQELEKGTPFTYRFRVPKEGSLKINDLIRGEVCWNLDTLGDFV 235

Query:   238 IMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLIL 297
             +MRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL F MP FAHVSLIL
Sbjct:   236 VMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALKFPMPQFAHVSLIL 295

Query:   298 APDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIER 357
             APDRSKLSKRHGATSVGQ+REMGYLPQ MVNYLALLGWGDGTENEFFTL+ LVEKF+IER
Sbjct:   296 APDRSKLSKRHGATSVGQYREMGYLPQGMVNYLALLGWGDGTENEFFTLEDLVEKFSIER 355

Query:   358 VNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKD 417
             VNKSGAIFDSTKLRWMNGQHLRA+P+ +LTKL+GERWKS GILTES+G FV+EA++LLKD
Sbjct:   356 VNKSGAIFDSTKLRWMNGQHLRALPNEKLTKLVGERWKSAGILTESEGSFVNEAVELLKD 415

Query:   418 GIDLVPDSDKALSNLLSYPLRDTL 441
             GI+LV DSDK L NLLSYPL  TL
Sbjct:   416 GIELVTDSDKVLLNLLSYPLHATL 439
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004818 "glutamate-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006424 "glutamyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA
GO:0043039 "tRNA aminoacylation" evidence=IEA;TAS
GO:0005739 "mitochondrion" evidence=IDA
GO:0007005 "mitochondrion organization" evidence=TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0009658 "chloroplast organization" evidence=TAS
GO:0048481 "ovule development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009570 "chloroplast stroma" evidence=IDA
TIGR_CMR|CHY_2340 CHY_2340 "glutamyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1219 GSU_1219 "glutamyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1365 DET_1365 "glutamyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0086 BA_0086 "glutamyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|MAL13P1.281 MAL13P1.281 "glutamate--tRNA ligase, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IDD3 MAL13P1.281 "Glutamate--tRNA ligase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|P04805 gltX "glutamyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2214 VC_2214 "glutamyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271906 mgluS "glutamate-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8EYM3SYE_LEPIN6, ., 1, ., 1, ., 1, 70.53330.70880.6026yesno
Q9FEA2SYE_ARATH6, ., 1, ., 1, ., 1, 70.82920.98640.7666yesno
Q250Q8SYE_DESHY6, ., 1, ., 1, ., 1, 70.52390.75390.6844yesno
A5IMM2SYE2_THEP16, ., 1, ., 1, ., 1, 70.52600.77420.7313yesno
O67271SYE_AQUAE6, ., 1, ., 1, ., 1, 70.54710.72000.6744yesno
Q43768SYE_HORVU6, ., 1, ., 1, ., 1, 70.79600.91190.7214N/Ano
B5YEP5SYE_DICT66, ., 1, ., 1, ., 1, 70.52530.73580.6834yesno
A8F597SYE1_THELT6, ., 1, ., 1, ., 1, 70.50870.76290.7191yesno
A4XLI3SYE2_CALS86, ., 1, ., 1, ., 1, 70.50950.82160.7551yesno
Q3A9N9SYE_CARHZ6, ., 1, ., 1, ., 1, 70.55120.81030.7479yesno
B0TBU3SYE_HELMI6, ., 1, ., 1, ., 1, 70.52730.78320.6995yesno
Q9X172SYE1_THEMA6, ., 1, ., 1, ., 1, 70.52600.77420.7313yesno
A5FPX2SYE_DEHSB6, ., 1, ., 1, ., 1, 70.50150.73580.6694yesno
Q0AYF8SYE1_SYNWW6, ., 1, ., 1, ., 1, 70.51650.81710.7313yesno
A6LJ42SYE1_THEM46, ., 1, ., 1, ., 1, 70.51650.74490.6976yesno
A5D5L8SYE_PELTS6, ., 1, ., 1, ., 1, 70.58640.73130.675yesno
Q72M46SYE_LEPIC6, ., 1, ., 1, ., 1, 70.53330.70880.6026yesno
Q3ZYP4SYE_DEHSC6, ., 1, ., 1, ., 1, 70.50890.73360.6673yesno
Q43794SYE_TOBAC6, ., 1, ., 1, ., 1, 70.80040.98190.7644N/Ano
B2V5J1SYE_SULSY6, ., 1, ., 1, ., 1, 70.53450.74710.6924yesno
B1LBX4SYE2_THESQ6, ., 1, ., 1, ., 1, 70.52310.77420.7313yesno
A7HKV0SYE1_FERNB6, ., 1, ., 1, ., 1, 70.51630.75390.7121yesno
A9BGT8SYE2_PETMO6, ., 1, ., 1, ., 1, 70.51880.74940.6803yesno
A4J0Y7SYE_DESRM6, ., 1, ., 1, ., 1, 70.53440.78550.7219yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.170.991
3rd Layer6.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
PLN02627 535 PLN02627, PLN02627, glutamyl-tRNA synthetase 0.0
PRK01406476 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed 0.0
TIGR00464470 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, ba 1e-169
COG0008472 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synth 1e-153
pfam00749314 pfam00749, tRNA-synt_1c, tRNA synthetases class I 1e-127
PRK12558445 PRK12558, PRK12558, glutamyl-tRNA synthetase; Prov 1e-103
PRK12410433 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthe 3e-97
PRK14895 513 PRK14895, gltX, glutamyl-tRNA synthetase; Provisio 2e-88
PRK05710299 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetas 9e-81
cd00808239 cd00808, GluRS_core, catalytic core domain of disc 5e-78
TIGR03838271 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA 8e-74
cd00808239 cd00808, GluRS_core, catalytic core domain of disc 3e-64
cd00418230 cd00418, GlxRS_core, catalytic core domain of glut 2e-49
PRK04156567 PRK04156, gltX, glutamyl-tRNA synthetase; Provisio 2e-47
cd00418230 cd00418, GlxRS_core, catalytic core domain of glut 9e-42
TIGR00463556 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, ar 1e-40
cd09287240 cd09287, GluRS_non_core, catalytic core domain of 1e-25
PTZ00402 601 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Prov 6e-18
cd00807238 cd00807, GlnRS_core, catalytic core domain of glut 1e-15
PRK14703 771 PRK14703, PRK14703, glutaminyl-tRNA synthetase/Yqe 3e-14
TIGR00440 522 TIGR00440, glnS, glutaminyl-tRNA synthetase 1e-13
PLN02907 722 PLN02907, PLN02907, glutamate-tRNA ligase 5e-13
PLN03233 523 PLN03233, PLN03233, putative glutamate-tRNA ligase 8e-13
PRK05347 554 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Pr 1e-11
cd09287240 cd09287, GluRS_non_core, catalytic core domain of 4e-11
PTZ00437 574 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Pr 3e-08
PLN02859 788 PLN02859, PLN02859, glutamine-tRNA ligase 1e-07
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase Back     alignment and domain information 
 Score =  852 bits (2202), Expect = 0.0
 Identities = 344/442 (77%), Positives = 379/442 (85%), Gaps = 10/442 (2%)

Query: 1   MASIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRF 60
             S+V  TP   IR +   ELAPP   +S      RRRFSV A+ +  +    G VRVRF
Sbjct: 1   AMSLVGGTP---IRLLP--ELAPPFLRRSRSS---RRRFSVRAAAAGESK--GGPVRVRF 50

Query: 61  APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLD 120
           APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDL RSTKESEEAVL+DL WLGLD
Sbjct: 51  APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLD 110

Query: 121 WDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPP 180
           WDEGP VGG+YGPYRQSERN++YKQYA+KLLESGHVY CFC++EELE MKE A+LK+LPP
Sbjct: 111 WDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPP 170

Query: 181 VYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMR 240
            YTGKWATA+D EVQ EL +GTPYTYRFRVPK GS+KI DLIRGEVSWN DTLGDFV++R
Sbjct: 171 RYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLR 230

Query: 241 SNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPD 300
           SNGQPVYNFCV VDDATM I+HVIRAEEHLPNTLRQALIYKALGF MP FAHVSLILAPD
Sbjct: 231 SNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPD 290

Query: 301 RSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNK 360
           RSKLSKRHGATSVGQFREMGYLP AMVNYLALLGW DGTENE FTL++LVEKF+I+R+NK
Sbjct: 291 RSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVEKFSIDRINK 350

Query: 361 SGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGID 420
           SGA+FDSTKL+WMNGQHLR +P  EL KL+GERWKS GIL ES G FV EA++LLKDGI+
Sbjct: 351 SGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERWKSAGILKESDGSFVKEAVELLKDGIE 410

Query: 421 LVPDSDKALSNLLSYPLRDTLT 442
           LV D+DK L NLLSYPL  TL+
Sbjct: 411 LVTDADKELLNLLSYPLAATLS 432

Length = 535
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), catalytic domain Back     alignment and domain information
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase Back     alignment and domain information
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
PLN02627 535 glutamyl-tRNA synthetase 100.0
KOG1149524 consensus Glutamyl-tRNA synthetase (mitochondrial) 100.0
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 100.0
PRK12558445 glutamyl-tRNA synthetase; Provisional 100.0
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 100.0
PRK14895513 gltX glutamyl-tRNA synthetase; Provisional 100.0
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 100.0
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 100.0
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 100.0
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 100.0
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 100.0
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 100.0
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 100.0
PLN03233 523 putative glutamate-tRNA ligase; Provisional 100.0
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 100.0
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 100.0
cd00808239 GluRS_core catalytic core domain of discriminating 100.0
PLN02859 788 glutamine-tRNA ligase 100.0
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 100.0
PLN02907 722 glutamate-tRNA ligase 100.0
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 100.0
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 100.0
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 100.0
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 100.0
cd09287240 GluRS_non_core catalytic core domain of non-discri 100.0
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 100.0
KOG1148 764 consensus Glutaminyl-tRNA synthetase [Translation, 100.0
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.91
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 99.88
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 99.86
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 99.86
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.84
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 99.82
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.82
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 99.82
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.82
PLN02946557 cysteine-tRNA ligase 99.8
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.8
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 99.77
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 99.67
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.66
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 99.6
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 99.57
PRK11893511 methionyl-tRNA synthetase; Reviewed 99.56
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 99.54
KOG2007 586 consensus Cysteinyl-tRNA synthetase [Translation, 99.54
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.53
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 99.49
PLN02610 801 probable methionyl-tRNA synthetase 99.49
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 99.48
cd00674353 LysRS_core_class_I catalytic core domain of class 99.47
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 99.45
PLN02286576 arginine-tRNA ligase 99.45
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 99.45
PRK12451562 arginyl-tRNA synthetase; Reviewed 99.44
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 99.44
PLN02224 616 methionine-tRNA ligase 99.43
PRK12267 648 methionyl-tRNA synthetase; Reviewed 99.41
PRK12268 556 methionyl-tRNA synthetase; Reviewed 99.34
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 99.33
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 99.3
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.3
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 99.3
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 99.23
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 99.23
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 99.21
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 99.19
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 99.11
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 99.1
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 99.07
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.07
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 98.96
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 98.94
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 98.87
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 98.87
PRK08560329 tyrosyl-tRNA synthetase; Validated 98.85
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 98.81
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 98.81
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 98.81
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 98.59
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 98.49
PLN02886389 aminoacyl-tRNA ligase 98.41
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 98.38
KOG0436 578 consensus Methionyl-tRNA synthetase [Translation, 98.29
PRK05912408 tyrosyl-tRNA synthetase; Validated 98.29
PLN02486383 aminoacyl-tRNA ligase 98.26
PRK13354410 tyrosyl-tRNA synthetase; Provisional 98.25
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 98.17
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 97.99
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 97.95
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 97.86
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 97.82
PLN02943 958 aminoacyl-tRNA ligase 97.79
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 97.79
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 97.78
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 97.78
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 97.77
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 97.68
PLN02563 963 aminoacyl-tRNA ligase 97.58
PLN02843 974 isoleucyl-tRNA synthetase 97.57
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 97.55
KOG2713347 consensus Mitochondrial tryptophanyl-tRNA syntheta 97.47
PLN02882 1159 aminoacyl-tRNA ligase 97.42
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 97.37
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 97.3
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 97.27
PF00133 601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 97.15
PLN02381 1066 valyl-tRNA synthetase 97.15
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 96.87
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 96.71
PLN02959 1084 aminoacyl-tRNA ligase 96.3
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 95.98
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 95.57
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 95.55
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 95.39
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 95.25
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 95.04
KOG1247 567 consensus Methionyl-tRNA synthetase [Translation, 95.04
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 94.72
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 94.71
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 94.3
PLN02843 974 isoleucyl-tRNA synthetase 94.13
PLN02882 1159 aminoacyl-tRNA ligase 93.79
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 93.64
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 93.08
PLN02943 958 aminoacyl-tRNA ligase 92.86
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 92.66
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 92.17
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 91.57
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 91.46
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 90.3
PLN02959 1084 aminoacyl-tRNA ligase 90.22
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 89.87
PLN02381 1066 valyl-tRNA synthetase 89.07
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 88.51
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 86.46
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 85.32
PRK00390805 leuS leucyl-tRNA synthetase; Validated 82.8
PLN02563963 aminoacyl-tRNA ligase 82.25
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 80.28
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=2e-125  Score=994.29  Aligned_cols=424  Identities=80%  Similarity=1.300  Sum_probs=401.6

Q ss_pred             cccccCCcceeeeccccccCCCeeeccccccccccceeeeecccccCCCCCCceEEEeCCCCCCcCChhhHHHHHHHHHH
Q 013441            3 SIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLF   82 (443)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~   82 (443)
                      ++++|||   +|++|+  ++++.++-+.+   .++.|+.....+..  ...++|||||||||||+|||||+||||+||++
T Consensus         3 ~~~~~~~---~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~   72 (535)
T PLN02627          3 SLVGGTP---IRLLPE--LAPPFLRRSRS---SRRRFSVRAAAAGE--SKGGPVRVRFAPSPTGNLHVGGARTALFNYLF   72 (535)
T ss_pred             hhhcCCc---ceeecc--ccccccccccc---cccceeeeeccccc--CCCCceEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            5789998   899998  78877776655   26788887775442  23678999999999999999999999999999


Q ss_pred             HHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCceeccccHHHHHHHHHHHHHcCCeeeecCC
Q 013441           83 ARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCS  162 (443)
Q Consensus        83 Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs  162 (443)
                      ||++||+|||||||||++|++++++++|+++|+||||+|||||++||+||||+||+|+++|+++|++|+++|+||+||||
T Consensus        73 Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs  152 (535)
T PLN02627         73 ARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCT  152 (535)
T ss_pred             HHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceeeeecccceeeecCCCCCCeEEEecC
Q 013441          163 NEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN  242 (443)
Q Consensus       163 ~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~VL~RsD  242 (443)
                      +++|+++|+.+...+.++.|+|+||+++.+|.++++.+|.+++||||+|.++.+.|+|+++|++++++.+++||||+|+|
T Consensus       153 ~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~D  232 (535)
T PLN02627        153 DEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSN  232 (535)
T ss_pred             hHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecC
Confidence            99999999988888889999999999999999998899999999999998889999999999999999999999999999


Q ss_pred             CccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeeceecCCCceecccCCCCChHHHHHCCCC
Q 013441          243 GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYL  322 (443)
Q Consensus       243 G~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlplil~~dg~KLSKR~g~~si~~~r~~G~~  322 (443)
                      |+||||||||||||+|+|||||||+||++|||+|++||+||||++|.|+|+|+|++++|+|||||+|+++|.+||++||+
T Consensus       233 G~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~~v~~~r~~G~~  312 (535)
T PLN02627        233 GQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGATSVGQFREMGYL  312 (535)
T ss_pred             CCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCCCccccccCCccHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCC
Q 013441          323 PQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTE  402 (443)
Q Consensus       323 peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~~~n~~~l~~~~~~~l~~~~~~~~~~~~~~~~  402 (443)
                      |+||+|||++|||++++++|+++++||++.|+++++++++++||.+||.|||++||++++.+++.+++.|++.+.|+...
T Consensus       313 PeAi~nyla~LGws~~~~~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l~~~~~~~~  392 (535)
T PLN02627        313 PDAMVNYLALLGWNDGTENEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERWKSAGILKE  392 (535)
T ss_pred             HHHHHHHHHHhCCCCCCCCCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCcc
Confidence            99999999999999887789999999999999999999999999999999999999999999999999999999887543


Q ss_pred             CCchHHHHHHHHHhhccccccchhhhccccccCc
Q 013441          403 SKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYP  436 (443)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  436 (443)
                      .+.+|+.+++.++|+|+++|.|+++.++|||.++
T Consensus       393 ~~~~~l~~~~~l~~~ri~~L~d~~~~~~~~f~~~  426 (535)
T PLN02627        393 SDGSFVKEAVELLKDGIELVTDADKELLNLLSYP  426 (535)
T ss_pred             ccHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCC
Confidence            3457899999999999999999999999999854

>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
2o5r_A481 Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec 1e-97
3al0_C592 Crystal Structure Of The Glutamine Transamidosome F 1e-93
3akz_B487 Crystal Structure Of Thermotoga Maritima Nondiscrim 2e-93
3afh_A488 Crystal Structure Of Thermotoga Maritima Nondiscrim 2e-93
4gri_A 512 Crystal Structure Of A Glutamyl-Trna Synthetase Glu 1e-90
2cfo_A 492 Non-discriminating Glutamyl-trna Synthetase From Th 6e-83
1j09_A468 Crystal Structure Of Thermus Thermophilus Glutamyl- 4e-81
1g59_A468 Glutamyl-Trna Synthetase Complexed With Trna(Glu). 2e-79
4g6z_A490 Crystal Structure Of A Glutamyl-Trna Synthetase Glu 6e-78
3pnv_A505 V369m Mutant Of Glutamyl-Trna Synthetase From Mycob 1e-72
2ja2_A 498 Mycobacterium Tuberculosis Glutamyl-Trna Synthetase 1e-72
3pny_A505 Structure Of Glutamyl-Trna Synthetase From Mycobact 1e-72
3aii_A553 Archaeal Non-Discriminating Glutamyl-Trna Synthetas 9e-32
1nzj_A298 Crystal Structure And Activity Studies Of Escherich 3e-27
2hz7_A 851 Crystal Structure Of The Glutaminyl-Trna Synthetase 3e-14
2rd2_A 556 Glutaminyl-Trna Synthetase Mutant C229r With Bound 2e-09
1euq_A 548 Crystal Structure Of Glutaminyl-Trna Synthetase Com 2e-08
1nyl_A 539 Unliganded Glutaminyl-Trna Synthetase Length = 539 2e-08
1qrs_A 553 Glutaminyl-Trna Synthetase Mutant D235n Complexed W 2e-08
1o0b_A 554 Crystal Structure Of L-Glutamine And Ampcpp Bound T 2e-08
1qrt_A 553 Glutaminyl-Trna Synthetase Mutant D235g Complexed W 2e-08
1gsg_P 553 Structure Of E.Coli Glutaminyl-Trna Synthetase Comp 2e-08
1qru_A 553 Glutaminyl-Trna Synthetase Mutant I129t Complexed W 2e-08
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351) From Thermotoga Maritima At 2.5 A Resolution Length = 481 Back     alignment and structure 
Iteration: 1

 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 177/346 (51%), Positives = 236/346 (68%), Gaps = 3/346 (0%)
Query: 56  VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
           VRVRFAPSPTG LHVGGARTALFN+LFAR + GKF+LRIEDTDLERS +E EE + + L 
Sbjct: 14  VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLR 73
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
           WLGL WDEGP VGGD+GPYRQSER  +Y+++A++L++ G  Y  +   EE+E+ +E    
Sbjct: 74  WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEXREKLLS 133
Query: 176 KQLPPVYTGKWATATDA-EVQKELE-RGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTL 233
           +   P Y+ +     D  E ++E E +G      F+ P+   + ++D+++GEV +    +
Sbjct: 134 EGKAPHYSQEXFEKFDTPERRREYEEKGLRPAVFFKXPRKDYV-LNDVVKGEVVFKTGAI 192
Query: 234 GDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293
           GDFVI RSNG P YNF   VDD    I+HVIR ++HL NTLRQ  +Y+A   + P FAHV
Sbjct: 193 GDFVIXRSNGLPTYNFACVVDDXLXEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHV 252
Query: 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353
           S IL PD  KLSKRHGATSV  FR+ GYLP+A+VNYLALLGW      E  TL++L+  F
Sbjct: 253 STILGPDGKKLSKRHGATSVEAFRDXGYLPEALVNYLALLGWSHPEGKELLTLEELISSF 312
Query: 354 TIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGI 399
           +++R++ + AIFD  KL+W NG +LR  P  +L +L    ++  GI
Sbjct: 313 SLDRLSPNPAIFDPQKLKWXNGYYLRNXPIEKLAELAKPFFEKAGI 358
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 592 Back     alignment and structure
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating Glutamyl- Trna Synthetase In Complex With Trnagln And A Glutamyl-Amp Analog Length = 487 Back     alignment and structure
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp Analog Length = 488 Back     alignment and structure
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound To Glutamic Acid And Zinc Length = 512 Back     alignment and structure
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From Thermosynechococcus Elongatus In Complex With Glu Length = 492 Back     alignment and structure
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna Synthetase Complexed With Atp And Glu Length = 468 Back     alignment and structure
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu). Length = 468 Back     alignment and structure
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From Burkholderia Thailandensis Bound To L-Glutamate Length = 490 Back     alignment and structure
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From Mycobacterium Tuberculosis Length = 505 Back     alignment and structure
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase Length = 498 Back     alignment and structure
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium Tuberculosis In Space Group P21 Length = 505 Back     alignment and structure
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Length = 553 Back     alignment and structure
>pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli Yadb Orf Length = 298 Back     alignment and structure
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From Deinococcus Radiodurans Length = 851 Back     alignment and structure
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog 5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine Length = 556 Back     alignment and structure
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed With A Trna- Gln Mutant And An Active-Site Inhibitor Length = 548 Back     alignment and structure
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase Length = 539 Back     alignment and structure
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With Glutamine Transfer Rna Length = 553 Back     alignment and structure
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To Glutamine Aminoacyl Trna Synthetase Length = 554 Back     alignment and structure
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With Glutamine Transfer Rna Length = 553 Back     alignment and structure
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed With Trnagln And Atp At 2.8 Angstroms Resolution Length = 553 Back     alignment and structure
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With Glutamine Transfer Rna Length = 553 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 0.0
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 0.0
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 0.0
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 0.0
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 0.0
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 0.0
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 0.0
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 1e-146
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 5e-36
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 7e-16
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 3e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 5e-09
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Length = 481 Back     alignment and structure
 Score =  627 bits (1619), Expect = 0.0
 Identities = 181/386 (46%), Positives = 258/386 (66%), Gaps = 7/386 (1%)

Query: 41  VAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLE 100
            +  +  + +     VRVRFAPSPTG LHVGGARTALFN+LFAR + GKF+LRIEDTDLE
Sbjct: 2   GSDKIHHHHHH---MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLE 58

Query: 101 RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCF 160
           RS +E EE +++ L WLGL WDEGP VGGD+GPYRQSER  +Y+++A++L++ G  Y  +
Sbjct: 59  RSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVY 118

Query: 161 CSNEELEKMKEIAKLKQLPPVYTGKWA--TATDAEVQKELERGTPYTYRFRVPKGGSLKI 218
              EE+E+M+E    +   P Y+ +      T    ++  E+G      F++P+   + +
Sbjct: 119 AYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYV-L 177

Query: 219 SDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQAL 278
           +D+++GEV +    +GDFVIMRSNG P YNF   VDD  M I+HVIR ++HL NTLRQ  
Sbjct: 178 NDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLA 237

Query: 279 IYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDG 338
           +Y+A   + P FAHVS IL PD  KLSKRHGATSV  FR+MGYLP+A+VNYLALLGW   
Sbjct: 238 LYEAFEKAPPVFAHVSTILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLGWSHP 297

Query: 339 TENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTG 398
              E  TL++L+  F+++R++ + AIFD  KL+WMNG +LR +P  +L +L    ++  G
Sbjct: 298 EGKELLTLEELISSFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIEKLAELAKPFFEKAG 357

Query: 399 ILTESKGPFVDEAIQLLKDGIDLVPD 424
           I       +  + +++ K+ ++++ +
Sbjct: 358 IKIID-EEYFKKVLEITKERVEVLSE 382
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Length = 498 Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Length = 468 Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Length = 490 Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Length = 492 Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 592 Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Length = 488 Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Length = 298 Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 553 Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Length = 553 Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Length = 523 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
4gri_A512 Glutamate--tRNA ligase; structural genomics, seatt 100.0
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 100.0
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 100.0
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 100.0
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 100.0
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 100.0
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 100.0
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 100.0
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 100.0
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 100.0
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 100.0
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 100.0
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 100.0
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.9
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 99.9
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 99.89
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 99.89
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 99.88
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 99.87
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 99.82
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 99.82
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 99.8
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 99.8
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 99.78
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 99.75
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 99.71
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 99.7
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 99.64
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 99.6
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 99.55
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 99.52
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 99.41
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 99.39
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 99.36
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 99.35
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 99.35
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 99.33
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 99.33
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 99.32
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 99.16
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 98.77
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 98.77
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 98.71
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 98.7
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 98.7
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 98.67
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 98.6
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 98.59
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 98.55
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 98.51
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 98.51
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 98.46
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 98.45
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 98.43
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 98.42
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 98.39
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 98.38
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 98.38
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 98.26
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 98.26
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 98.24
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 98.18
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 98.13
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 98.02
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 97.91
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 97.86
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 97.81
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 97.62
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 97.56
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 97.5
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 97.28
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 96.1
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 95.16
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 93.73
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 93.23
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 92.95
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 90.98
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 90.01
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 88.93
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
Probab=100.00  E-value=2.6e-116  Score=933.81  Aligned_cols=385  Identities=41%  Similarity=0.737  Sum_probs=369.7

Q ss_pred             CCceEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 013441           53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG  132 (443)
Q Consensus        53 ~~~vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~g  132 (443)
                      .++|||||||||||+||||||||||+||++||++||+|||||||||++|++++++++|++||+||||+|||||.+||+||
T Consensus        22 ~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~  101 (512)
T 4gri_A           22 MLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYA  101 (512)
T ss_dssp             --CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred             CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 013441          133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK  212 (443)
Q Consensus       133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~  212 (443)
                      ||+||+|+++|++++++|+++|+||+||||++|+++.|+.+...+.+|.|++.|++++.++..+...+|.++++|||+|.
T Consensus       102 py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~  181 (512)
T 4gri_A          102 PYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPL  181 (512)
T ss_dssp             CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCS
T ss_pred             CccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999998889999999999998


Q ss_pred             CCceeeeecccceeeecCC-CCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEE
Q 013441          213 GGSLKISDLIRGEVSWNLD-TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFA  291 (443)
Q Consensus       213 ~~~~~~~D~v~G~i~~~~~-~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~  291 (443)
                      ++.+.|+|.++|++.+... ..+|+||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||++|.|+
T Consensus       182 ~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~~~P~y~  261 (512)
T 4gri_A          182 EGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYC  261 (512)
T ss_dssp             SCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEE
T ss_pred             cCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCCCCCeEE
Confidence            8899999999999998765 457999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeceecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccccHHHHH
Q 013441          292 HVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLR  371 (443)
Q Consensus       292 Hlplil~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~fd~~kL~  371 (443)
                      |+|+|++.+|+|||||+|+.+|.+||++||+|+||+|||++|||++++++|+||++||++.|+++++++++++||++||.
T Consensus       262 H~pli~~~~g~kLSKR~~~~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~  341 (512)
T 4gri_A          262 HLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQFFSIEKINKSPAIFDYHKLD  341 (512)
T ss_dssp             EECCCBCTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHHCCGGGBCSSCCBCCHHHHH
T ss_pred             ecchhccccccccCcccccccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHHHHhcCCCCCCccccHHHHH
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHcCCCCCC----CchHHHHHHHHHhhccccccchhhhccccccCcc
Q 013441          372 WMNGQHLRAIPSNELTKLIGERWKSTGILTES----KGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPL  437 (443)
Q Consensus       372 ~~n~~~l~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  437 (443)
                      |||++||++++.+++.+++.|++++.|+....    +.+++.+++.++|+|++++.|+.+.+.|||..|.
T Consensus       342 ~~N~~~i~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~di~~~~~~ff~~~~  411 (512)
T 4gri_A          342 FFNSYYIREKKDEDLFNLLLPFFQKKGYVSKPSTLEENQKLKLLIPLIKSRIKKLSDALNMTKFFYEDIK  411 (512)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHHHHHTTCSSTTHHHHHTHHHHSCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHcCCcccccchhhHHHHHHHHHHHHhhcccHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999886432    2468999999999999999999999999998653
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d1j09a2305 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS 1e-108
d1nzja_286 c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB 6e-80
d1gtra2331 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (Gln 5e-75
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 2e-23
d1j09a1163 a.97.1.1 (A:306-468) C-terminal domain of glutamyl 2e-05
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  320 bits (820), Expect = e-108
 Identities = 134/310 (43%), Positives = 196/310 (63%), Gaps = 6/310 (1%)

Query: 56  VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
           V  R APSPTG+ HVG A  ALFNY +AR  GG+F++RIEDTD  R    +EE +L  L 
Sbjct: 2   VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61

Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
           WLGL +DEGP VGG +GPYRQSER  LY++YA++LL+ G  YR F + EELE++++    
Sbjct: 62  WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKE--- 118

Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
                 Y G+       E ++   RG P+  R +VP+ G+ ++ D +RG V ++   + D
Sbjct: 119 ---KGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175

Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
            V+++S+G P Y+    VDD  M ++ VIRAEE L +T    L+Y+A G+  P F H+ L
Sbjct: 176 VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235

Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTI 355
           +  PD++K+SKR   TS+  ++  G+LP+A+ NYL L+G+      E FTL++ ++ FT 
Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTW 295

Query: 356 ERVNKSGAIF 365
           ERV+  G +F
Sbjct: 296 ERVSLGGPVF 305
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Length = 286 Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 100.0
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 100.0
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 100.0
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.74
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.58
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.47
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.45
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.42
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.41
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.32
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.27
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.07
d1j09a1163 C-terminal domain of glutamyl-tRNA synthetase (Glu 99.0
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 98.95
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 98.24
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 98.08
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 98.01
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 97.97
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 97.91
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 97.9
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 92.79
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 88.37
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 82.48
d1irxa1204 C-terminal domain of class I lysyl-tRNA synthetase 81.66
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2e-94  Score=718.16  Aligned_cols=304  Identities=44%  Similarity=0.800  Sum_probs=294.3

Q ss_pred             eEEEeCCCCCCcCChhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcee
Q 013441           56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR  135 (443)
Q Consensus        56 vr~RFAPSPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~I~~dL~wLGl~wDegp~~gg~~gpy~  135 (443)
                      |+|||||||||+|||||+||||+||++||++||+|||||||||++|+.++++++|++||+||||+||++|..+|++++|+
T Consensus         2 vvtRfaPsPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRidDtD~~R~~~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~   81 (305)
T d1j09a2           2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR   81 (305)
T ss_dssp             CEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred             eEEecCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCchHHHHHHHHHHHHHhcCcccCCcCCCCCccee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCc
Q 013441          136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGS  215 (443)
Q Consensus       136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~  215 (443)
                      ||+|+++|++++++|+++|+||+|+||++++++.++..      +.|+++|++++.++.++++..|.++++||+++..+.
T Consensus        82 qS~r~~~y~~~~~~Li~~g~aY~C~cs~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~  155 (305)
T d1j09a2          82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK------GGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGT  155 (305)
T ss_dssp             GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHH------SSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred             eecchhHHHHHHHHHHHcCCeeeccccchhhhhhhhhc------cCCCCccccchhhhHHHHhhcCCcceEEEeccccCC
Confidence            99999999999999999999999999999998876542      459999999999998888889999999999998888


Q ss_pred             eeeeecccceeeecCCCCCCeEEEecCCccccchhhhhhcccCCcceEEecCCCCCCHHHHHHHHHHcCCCCCcEEEeec
Q 013441          216 LKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL  295 (443)
Q Consensus       216 ~~~~D~v~G~i~~~~~~~~D~VL~RsDG~PtY~fA~vVDD~~m~ITHVIRG~D~l~ntp~q~~ly~aLg~~~P~f~Hlpl  295 (443)
                      +.|+|.++|.+.+....++||||+|.||+|||||||||||++|||||||||+||++|||+|++|+++|||+.|.|+|+|+
T Consensus       156 ~~~~d~i~~~~~~~~~~~~D~vi~r~dg~p~Y~~A~vvDD~~~githviRG~Dl~~~t~~q~~l~~~Lg~~~p~~~h~~l  235 (305)
T d1j09a2         156 TEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL  235 (305)
T ss_dssp             EEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECC
T ss_pred             ccccchhhceeeeccccCCCeEEECCCCCeehHHHHHHHHHHccCccccccccceeccHHHHHHHHhhcCCCCceeeecc
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCceecccCCCCChHHHHHCCCCHHHHHHHHHHhCCCCCCCCcccCHHHHHhccccccccCCCccc
Q 013441          296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIF  365 (443)
Q Consensus       296 il~~dg~KLSKR~g~~si~~~r~~G~~peai~n~l~~LG~~~~~~~e~~s~~eli~~F~l~~v~~~~~~f  365 (443)
                      +++.+|+|||||+++.+|++||++||+||||+|||++|||+.++..|++|++|+++.|+++++++++++|
T Consensus       236 ~~~~~g~KLSKr~~~~tl~~lr~~G~~peai~~~l~~lG~~~~~~~~~~sl~e~i~~f~~~~v~k~~~~f  305 (305)
T d1j09a2         236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVF  305 (305)
T ss_dssp             CBCTTSCBCCTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHHCCGGGCCCSCCBC
T ss_pred             cccCccccccccCCccCHHHHHHcCCCHHHHHHHHHHhCCCCCCCcCcCCHHHHHHhCCHhhCCCCCCCC
Confidence            9999999999999999999999999999999999999999998888999999999999999999999987
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1irxa1 a.97.1.2 (A:320-523) C-terminal domain of class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure