Citrus Sinensis ID: 013449

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
ccHHHHHHHHHccccccccccEEEEEEEEEEEcccccHHHHHHHHHHccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccEEEEEEccccccccccEEEEccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccEEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccEEEEEEEEcccccccEEccccccccccccccccccccEEEEcccccccHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccccccccccccEEEEccHHHHHHHHHccEEcccccccc
ccHHHHHHHHcEEEccccccccEEEEEEcEEEEccccHHHHHHHHHcccccccccccccEEEEEccccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccEcccccccccEEEEEcccHHccccccEEEEccccHHHHHHHccEEEEccHHHHHHHHHcccEEEEccEEEEEEEEccccccccHHHHHHHHHHHHcccccEcEEEEEEcHHHHHccHHHHHHHHHHHHHHcEcEEEccccHHHHHHHcccccccccccccccccEEEEEEEEEHHHcccEEEccccccccEccccccccEEcEEEEEcccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHcccccccccHHHHHHHHccccccccccccHHcccccccHHHcccccEEEcccccccccccccccccEccccHHHHHHHHHHcccccHHHHHc
MTLTEKIFSrasekpqlspgdnvWVNVDILMthdvcgpgsfgifkkefgenakvwdrekiviipdhyiftsderanRNVDILRDFCMEQNIKYFYDIKdlgnfkanpdykgvCHIALaqeghcrpgevllgtdshtctagafgqfatgigntdagfvlgtgkvllkvpptlrfvldgempdyLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEaggkngvvpadgttfkyledktslpyepvysdekasflseyrfdiskleplvakphspdnralareckdvkidrvyigsctggktEDFLAAAKVFLAsgkkvkvptflvpatqkvwmdvytlpvpgsggktcSQIFeeagcdtpaspscgaclggpkdtyarmnepmvcvsttnrnfpgrmghkegqiylaspytAAASAltgyvtdprefle
MTLTEKIFsrasekpqlspgdNVWVNVDILMTHDVCGPGSFGIFKKEFgenakvwdrekiviipdhyiftsderanRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEplvakphspdnralareckdvkiDRVYIGSCTGGKTEDFLAAAKVFLasgkkvkvptflvpatqkvwMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
*********************NVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLV*********ALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV********
MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
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MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q94AR8509 3-isopropylmalate dehydra yes no 1.0 0.870 0.860 0.0
P81291424 Isopropylmalate/citramala yes no 0.939 0.981 0.431 3e-97
Q8TVF2418 3-isopropylmalate dehydra yes no 0.936 0.992 0.428 1e-91
O67078432 3-isopropylmalate dehydra yes no 0.943 0.967 0.388 6e-90
B0TCR2420 3-isopropylmalate dehydra yes no 0.934 0.985 0.393 8e-90
Q8TQZ3420 3-isopropylmalate dehydra yes no 0.932 0.983 0.410 3e-87
Q2LWJ2420 3-isopropylmalate dehydra yes no 0.941 0.992 0.396 7e-87
Q8PUG1420 3-isopropylmalate dehydra yes no 0.932 0.983 0.403 1e-86
B8CX22420 3-isopropylmalate dehydra yes no 0.939 0.990 0.396 2e-86
O27439419 3-isopropylmalate dehydra yes no 0.932 0.985 0.415 3e-86
>sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/443 (86%), Positives = 418/443 (94%)

Query: 1   MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
           MT+TEKI +RASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKVWD EKI
Sbjct: 67  MTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKVWDPEKI 126

Query: 61  VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
           V+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH+ALAQE
Sbjct: 127 VVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCHVALAQE 186

Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
           GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+LDGEMP
Sbjct: 187 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFILDGEMP 246

Query: 181 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240
            YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGKNGV+P 
Sbjct: 247 SYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGKNGVIPP 306

Query: 241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV 300
           D TT  Y+E++TS+P+EPVYSD  ASF+++YRFD+SKLEP+VAKPHSPDNRALARECKDV
Sbjct: 307 DATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALARECKDV 366

Query: 301 KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGK 360
           KIDRVYIGSCTGGKTEDF+AAAK+F A+G+KVKVPTFLVPATQKVWMDVY LPVPG+GGK
Sbjct: 367 KIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTFLVPATQKVWMDVYALPVPGAGGK 426

Query: 361 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYL 420
           TC+QIFEEAGCDTPASPSCGACLGGP DTYAR+NEP VCVSTTNRNFPGRMGHKEGQIYL
Sbjct: 427 TCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHKEGQIYL 486

Query: 421 ASPYTAAASALTGYVTDPREFLE 443
           ASPYTAAASALTG V DPREFL+
Sbjct: 487 ASPYTAAASALTGRVADPREFLQ 509
Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 3
>sp|P81291|LEUC_METJA Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=leuC PE=1 SV=1 Back     alignment and function description
>sp|Q8TVF2|LEUC1_METKA 3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=leuC1 PE=3 SV=1 Back     alignment and function description
>sp|O67078|LEUC_AQUAE 3-isopropylmalate dehydratase large subunit OS=Aquifex aeolicus (strain VF5) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|B0TCR2|LEUC_HELMI 3-isopropylmalate dehydratase large subunit OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|Q8TQZ3|LEUC2_METAC 3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=leuC2 PE=3 SV=1 Back     alignment and function description
>sp|Q2LWJ2|LEUC_SYNAS 3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|Q8PUG1|LEUC2_METMA 3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=leuC2 PE=3 SV=2 Back     alignment and function description
>sp|B8CX22|LEUC_HALOH 3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|O27439|LEUC1_METTH 3-isopropylmalate dehydratase large subunit 1 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=leuC1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
255574875510 3-isopropylmalate dehydratase, putative 1.0 0.868 0.927 0.0
225439231508 PREDICTED: 3-isopropylmalate dehydratase 1.0 0.872 0.930 0.0
224110650462 predicted protein [Populus trichocarpa] 1.0 0.958 0.932 0.0
356553399500 PREDICTED: 3-isopropylmalate dehydratase 0.997 0.884 0.925 0.0
356562389502 PREDICTED: 3-isopropylmalate dehydratase 1.0 0.882 0.923 0.0
225433279508 PREDICTED: 3-isopropylmalate dehydratase 0.997 0.870 0.923 0.0
296085913528 unnamed protein product [Vitis vinifera] 1.0 0.839 0.889 0.0
357439825505 3-isopropylmalate dehydratase [Medicago 1.0 0.877 0.900 0.0
242063896507 hypothetical protein SORBIDRAFT_04g00212 0.997 0.871 0.904 0.0
115443927514 Os02g0125100 [Oryza sativa Japonica Grou 0.997 0.859 0.891 0.0
>gi|255574875|ref|XP_002528344.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] gi|223532212|gb|EEF34016.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/443 (92%), Positives = 432/443 (97%)

Query: 1   MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
           MT+TEKI +RASEK QLSPG+NVWVNVD+LMTHDVCGPGS GIFK+EFG+NA VWDREKI
Sbjct: 68  MTMTEKILARASEKSQLSPGENVWVNVDVLMTHDVCGPGSIGIFKREFGQNATVWDREKI 127

Query: 61  VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
           VIIPDHYIFT+DERANRNVDILRDFC EQN+KYFYDIKDL NFK NPDYKGVCH+ALAQE
Sbjct: 128 VIIPDHYIFTTDERANRNVDILRDFCQEQNVKYFYDIKDLSNFKVNPDYKGVCHVALAQE 187

Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
           GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPTLRFV+DGEMP
Sbjct: 188 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMP 247

Query: 181 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240
           DYLLAKDLILQIIGEISV+GATYKSMEFVGTTVE L+MEERMTLCNMVVEAGGKNGV+P+
Sbjct: 248 DYLLAKDLILQIIGEISVSGATYKSMEFVGTTVESLNMEERMTLCNMVVEAGGKNGVIPS 307

Query: 241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV 300
           D TTFKYLEDKTS+P+EPVYSDEKA FLSEYRFD+SKLEPLVAKPHSPDN ALARECKDV
Sbjct: 308 DSTTFKYLEDKTSVPFEPVYSDEKARFLSEYRFDVSKLEPLVAKPHSPDNCALARECKDV 367

Query: 301 KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGK 360
           KIDRVYIGSCTGGKTEDF+AAAKVFLASGKKVKVPTFLVPATQKVWMDVY+LPVPGSGGK
Sbjct: 368 KIDRVYIGSCTGGKTEDFMAAAKVFLASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGK 427

Query: 361 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYL 420
           TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYL
Sbjct: 428 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYL 487

Query: 421 ASPYTAAASALTGYVTDPREFLE 443
           ASPYTAAASALTGYVTDPREFL+
Sbjct: 488 ASPYTAAASALTGYVTDPREFLQ 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439231|ref|XP_002271046.1| PREDICTED: 3-isopropylmalate dehydratase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110650|ref|XP_002315591.1| predicted protein [Populus trichocarpa] gi|222864631|gb|EEF01762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356553399|ref|XP_003545044.1| PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max] Back     alignment and taxonomy information
>gi|356562389|ref|XP_003549454.1| PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max] Back     alignment and taxonomy information
>gi|225433279|ref|XP_002285491.1| PREDICTED: 3-isopropylmalate dehydratase [Vitis vinifera] gi|296083736|emb|CBI23725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085913|emb|CBI31237.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357439825|ref|XP_003590190.1| 3-isopropylmalate dehydratase [Medicago truncatula] gi|355479238|gb|AES60441.1| 3-isopropylmalate dehydratase [Medicago truncatula] Back     alignment and taxonomy information
>gi|242063896|ref|XP_002453237.1| hypothetical protein SORBIDRAFT_04g002120 [Sorghum bicolor] gi|241933068|gb|EES06213.1| hypothetical protein SORBIDRAFT_04g002120 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|115443927|ref|NP_001045743.1| Os02g0125100 [Oryza sativa Japonica Group] gi|41053038|dbj|BAD07969.1| putative 3-isopropylmalate dehydratase large subunit [Oryza sativa Japonica Group] gi|113535274|dbj|BAF07657.1| Os02g0125100 [Oryza sativa Japonica Group] gi|215678837|dbj|BAG95274.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189963|gb|EEC72390.1| hypothetical protein OsI_05669 [Oryza sativa Indica Group] gi|222622087|gb|EEE56219.1| hypothetical protein OsJ_05201 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2142120509 IIL1 "isopropyl malate isomera 1.0 0.870 0.860 1.3e-217
TIGR_CMR|CHY_0522421 CHY_0522 "3-isopropylmalate de 0.932 0.980 0.396 1.7e-82
TIGR_CMR|DET_0828416 DET_0828 "3-isopropylmalate de 0.932 0.992 0.407 7.4e-82
UNIPROTKB|Q0QLE2420 dmdA "2,3-dimethylmalate dehyd 0.934 0.985 0.397 7.9e-78
TIGR_CMR|DET_0448417 DET_0448 "homoaconitate hydrat 0.927 0.985 0.391 1.2e-72
UNIPROTKB|Q3AD33417 leuC "3-isopropylmalate dehydr 0.927 0.985 0.380 3.2e-72
TIGR_CMR|CHY_1105417 CHY_1105 "3-isopropylmalate de 0.927 0.985 0.380 3.2e-72
TIGR_CMR|GSU_1903427 GSU_1903 "3-isopropylmalate de 0.923 0.957 0.392 1.3e-68
CGD|CAL0005750 776 LEU1 [Candida albicans (taxid: 0.575 0.328 0.329 2.4e-49
UNIPROTKB|Q9KP81467 leuC "3-isopropylmalate dehydr 0.629 0.597 0.294 8.8e-49
TAIR|locus:2142120 IIL1 "isopropyl malate isomerase large subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2102 (745.0 bits), Expect = 1.3e-217, P = 1.3e-217
 Identities = 381/443 (86%), Positives = 418/443 (94%)

Query:     1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
             MT+TEKI +RASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKVWD EKI
Sbjct:    67 MTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKVWDPEKI 126

Query:    61 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
             V+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH+ALAQE
Sbjct:   127 VVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCHVALAQE 186

Query:   121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
             GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+LDGEMP
Sbjct:   187 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFILDGEMP 246

Query:   181 DYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA 240
              YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGKNGV+P 
Sbjct:   247 SYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGKNGVIPP 306

Query:   241 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDV 300
             D TT  Y+E++TS+P+EPVYSD  ASF+++YRFD+SKLEP+VAKPHSPDNRALARECKDV
Sbjct:   307 DATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALARECKDV 366

Query:   301 KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGK 360
             KIDRVYIGSCTGGKTEDF+AAAK+F A+G+KVKVPTFLVPATQKVWMDVY LPVPG+GGK
Sbjct:   367 KIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTFLVPATQKVWMDVYALPVPGAGGK 426

Query:   361 TCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYL 420
             TC+QIFEEAGCDTPASPSCGACLGGP DTYAR+NEP VCVSTTNRNFPGRMGHKEGQIYL
Sbjct:   427 TCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHKEGQIYL 486

Query:   421 ASPYTAAASALTGYVTDPREFLE 443
             ASPYTAAASALTG V DPREFL+
Sbjct:   487 ASPYTAAASALTGRVADPREFLQ 509
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0016836 "hydro-lyase activity" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP
GO:0050486 "intramolecular transferase activity, transferring hydroxy groups" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0009536 "plastid" evidence=IDA
TIGR_CMR|CHY_0522 CHY_0522 "3-isopropylmalate dehydratase, large subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0828 DET_0828 "3-isopropylmalate dehydratase, large subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q0QLE2 dmdA "2,3-dimethylmalate dehydratase large subunit" [Eubacterium barkeri (taxid:1528)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0448 DET_0448 "homoaconitate hydratase family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AD33 leuC "3-isopropylmalate dehydratase large subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1105 CHY_1105 "3-isopropylmalate dehydratase, large subunit family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1903 GSU_1903 "3-isopropylmalate dehydratase, large subunit, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
CGD|CAL0005750 LEU1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP81 leuC "3-isopropylmalate dehydratase large subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B8FMM4LEUC_DESAA4, ., 2, ., 1, ., 3, 30.37330.92090.9737yesno
A8EQZ0LEUC_ARCB44, ., 2, ., 1, ., 3, 30.38830.93670.9741yesno
A6Q5L6LEUC_NITSB4, ., 2, ., 1, ., 3, 30.40130.93000.9786yesno
Q18AJ2LEUC_CLOD64, ., 2, ., 1, ., 3, 30.38970.93900.9788yesno
Q8PUG1LEUC2_METMA4, ., 2, ., 1, ., 3, 30.40350.93220.9833yesno
A3DHI4LEUC_CLOTH4, ., 2, ., 1, ., 3, 30.39720.93670.9904yesno
A0RMG7LEUC_CAMFF4, ., 2, ., 1, ., 3, 30.39410.92550.9738yesno
Q2RG98LEUC_MOOTA4, ., 2, ., 1, ., 3, 30.38870.94130.9904yesno
Q8U2A1LEUC1_PYRFU4, ., 2, ., 1, ., 3, 30.40040.94130.9834yesno
Q2LWJ2LEUC_SYNAS4, ., 2, ., 1, ., 3, 30.39680.94130.9928yesno
B2TIQ9LEUC_CLOBB4, ., 2, ., 1, ., 3, 30.39220.93220.9856yesno
B0K0Y2LEUC_THEPX4, ., 2, ., 1, ., 3, 30.38230.93000.9856yesno
B2UYH6LEUC_CLOBA4, ., 2, ., 1, ., 3, 30.39680.93220.9856yesno
A6LPX4LEUC_CLOB84, ., 2, ., 1, ., 3, 30.40580.93220.9856yesno
Q8RDK2LEUC_THETN4, ., 2, ., 1, ., 3, 30.38000.93000.9856yesno
Q8TVF2LEUC1_METKA4, ., 2, ., 1, ., 3, 30.42850.93670.9928yesno
A7H0L8LEUC_CAMC54, ., 2, ., 1, ., 3, 30.39230.93000.9786yesno
B9L6Y8LEUC_NAUPA4, ., 2, ., 1, ., 3, 30.38050.93000.9694yesno
O67078LEUC_AQUAE4, ., 2, ., 1, ., 3, 30.38830.94350.9675yesno
B9MLV4LEUC_CALBD4, ., 2, ., 1, ., 3, 30.38280.93670.9673yesno
B8CX22LEUC_HALOH4, ., 2, ., 1, ., 3, 30.39630.93900.9904yesno
A4XJ48LEUC_CALS84, ., 2, ., 1, ., 3, 30.39180.93670.9673yesno
O27439LEUC1_METTH4, ., 2, ., 1, ., 3, 30.41550.93220.9856yesno
B0KAH5LEUC_THEP34, ., 2, ., 1, ., 3, 30.38230.93000.9880yesno
Q726X4LEUC_DESVH4, ., 2, ., 1, ., 3, 30.37720.92550.9785yesno
Q97EE0LEUC_CLOAB4, ., 2, ., 1, ., 3, 30.37100.94350.9905yesno
A7ZFP0LEUC_CAMC14, ., 2, ., 1, ., 3, 30.38340.93000.9786yesno
P81291LEUC_METJA4, ., 2, ., 1, ., 3, 10.43170.93900.9811yesno
A1VAE7LEUC_DESVV4, ., 2, ., 1, ., 3, 30.37720.92550.9785yesno
B5YKE0LEUC_THEYD4, ., 2, ., 1, ., 3, 30.37690.93670.9857yesno
Q24XT4LEUC_DESHY4, ., 2, ., 1, ., 3, 30.38200.93900.9881yesno
B1H0A6LEUC_UNCTG4, ., 2, ., 1, ., 3, 30.39360.93670.9880yesno
O28316LEUC1_ARCFU4, ., 2, ., 1, ., 3, 30.39590.93000.9856yesno
Q9WZ24LEUC2_THEMA4, ., 2, ., 1, ., 3, 30.39410.93450.9928yesno
Q7M9Z9LEUC_WOLSU4, ., 2, ., 1, ., 3, 30.39460.93220.9786yesno
A6Q6J8LEUC_SULNB4, ., 2, ., 1, ., 3, 30.38660.93220.9694yesno
Q8TQZ3LEUC2_METAC4, ., 2, ., 1, ., 3, 30.41030.93220.9833yesno
A7IA28LEUC_METB64, ., 2, ., 1, ., 3, 30.37810.93000.9903yesno
B0TCR2LEUC_HELMI4, ., 2, ., 1, ., 3, 30.39360.93450.9857yesno
A9KT79LEUC_CLOPH4, ., 2, ., 1, ., 3, 30.38510.93900.9881yesno
Q9UZ07LEUC1_PYRAB4, ., 2, ., 1, ., 3, 30.38470.94130.9858yesno
Q94AR8LEUC_ARATH4, ., 2, ., 1, ., 3, 30.86001.00.8703yesno
Q30NZ0LEUC_SULDN4, ., 2, ., 1, ., 3, 30.38280.92550.9785yesno
Q9RTI6LEUC2_DEIRA4, ., 2, ., 1, ., 3, 30.36140.92090.9466yesno
A5MZ75LEUC_CLOK54, ., 2, ., 1, ., 3, 30.38000.94350.9952yesno
B4U7U5LEUC_HYDS04, ., 2, ., 1, ., 3, 30.37640.93000.9716yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.983
3rd Layer4.2.1.330.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
cd01583382 cd01583, IPMI, 3-isopropylmalate dehydratase catal 0.0
PRK00402418 PRK00402, PRK00402, 3-isopropylmalate dehydratase 0.0
COG0065423 COG0065, LeuC, 3-isopropylmalate dehydratase large 1e-166
TIGR01343412 TIGR01343, hacA_fam, homoaconitate hydratase famil 1e-148
TIGR02086412 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratas 1e-138
TIGR02083419 TIGR02083, LEU2, 3-isopropylmalate dehydratase, la 1e-122
PRK12466471 PRK12466, PRK12466, isopropylmalate isomerase larg 4e-93
PRK05478466 PRK05478, PRK05478, isopropylmalate isomerase larg 2e-82
cd01351389 cd01351, Aconitase, Aconitase catalytic domain; Ac 3e-76
PRK07229 646 PRK07229, PRK07229, aconitate hydratase; Validated 7e-72
TIGR00170465 TIGR00170, leuC, 3-isopropylmalate dehydratase, la 2e-66
pfam00330464 pfam00330, Aconitase, Aconitase family (aconitate 4e-65
cd01585380 cd01585, AcnA_Bact, Aconitase catalyzes the revers 1e-64
TIGR01342 658 TIGR01342, acon_putative, aconitate hydratase, put 9e-63
COG1048 861 COG1048, AcnA, Aconitase A [Energy production and 4e-53
TIGR00139 712 TIGR00139, h_aconitase, homoaconitase 5e-50
cd01582363 cd01582, Homoaconitase, Homoaconitase and other un 5e-48
cd01584412 cd01584, AcnA_Mitochondrial, Aconitase catalyzes t 4e-34
TIGR01340 745 TIGR01340, aconitase_mito, aconitate hydratase, mi 2e-32
PRK09238835 PRK09238, PRK09238, bifunctional aconitate hydrata 3e-24
COG1049852 COG1049, AcnB, Aconitase B [Energy production and 6e-22
cd01581436 cd01581, AcnB, Aconitate hydratase B catalyses the 1e-20
PTZ00092 898 PTZ00092, PTZ00092, aconitate hydratase-like prote 1e-19
TIGR01341 876 TIGR01341, aconitase_1, aconitate hydratase 1 8e-19
TIGR00117844 TIGR00117, acnB, aconitate hydratase 2 1e-18
PLN00094938 PLN00094, PLN00094, aconitate hydratase 2; Provisi 7e-18
cd01586404 cd01586, AcnA_IRP, Aconitase A catalytic domain 1e-15
PRK12881 889 PRK12881, acnA, aconitate hydratase; Provisional 6e-13
TIGR02333 858 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh 3e-12
PLN00070 936 PLN00070, PLN00070, aconitate hydratase 4e-12
PRK11413 751 PRK11413, PRK11413, putative hydratase; Provisiona 4e-11
PRK09277 888 PRK09277, PRK09277, aconitate hydratase; Validated 6e-07
COG1803142 COG1803, MgsA, Methylglyoxal synthase [Carbohydrat 0.004
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information 
 Score =  561 bits (1447), Expect = 0.0
 Identities = 186/407 (45%), Positives = 244/407 (59%), Gaps = 25/407 (6%)

Query: 29  ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCME 88
           + + HDV  P +F   ++   E  KVWD EKIV + DH + T D +A   V  LR F  E
Sbjct: 1   LHLVHDVTSPQAFEGLREAGRE--KVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKE 58

Query: 89  QNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 148
             I  F+D+            +G+CH+ L ++G   PG  ++G DSHTCT GAFG FATG
Sbjct: 59  FGIN-FFDV----------GRQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATG 107

Query: 149 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEF 208
           IG TD   VL TGK+  +VP T+R  ++G++P  + AKD+IL IIG+I V GATYK+MEF
Sbjct: 108 IGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEF 167

Query: 209 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFL 268
            G  +E LSMEERMTLCNM +EAG K G+V  D TTF+YL+ +    ++ + SDE A + 
Sbjct: 168 AGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAEYD 227

Query: 269 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLAS 328
                D S+LEP VA PHSPDN     E + +KID+V+IGSCT G+ ED  AAA++    
Sbjct: 228 KVVEIDASELEPQVAWPHSPDNVVPVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILKGR 287

Query: 329 GKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKD 388
                V   +VPA+Q+V+             +   +IF EAG +    P CGACLGG   
Sbjct: 288 KVADGVRLIVVPASQRVYKQAEK--------EGLIEIFIEAGAEVRP-PGCGACLGGHMG 338

Query: 389 TYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 435
               +     CVST+NRNF GRMG    +IYLASP TAAASA+TG +
Sbjct: 339 ---VLAPGERCVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382

Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. Length = 382
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein Back     alignment and domain information
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase) Back     alignment and domain information
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase Back     alignment and domain information
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial Back     alignment and domain information
>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1 Back     alignment and domain information
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2 Back     alignment and domain information
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional Back     alignment and domain information
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain Back     alignment and domain information
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase Back     alignment and domain information
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional Back     alignment and domain information
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|224716 COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
COG0065423 LeuC 3-isopropylmalate dehydratase large subunit [ 100.0
TIGR02083419 LEU2 3-isopropylmalate dehydratase, large subunit. 100.0
TIGR01343412 hacA_fam homoaconitate hydratase family protein. T 100.0
TIGR02086412 IPMI_arch 3-isopropylmalate dehydratase, large sub 100.0
PRK00402418 3-isopropylmalate dehydratase large subunit; Revie 100.0
PRK12466471 isopropylmalate isomerase large subunit; Provision 100.0
TIGR00170465 leuC 3-isopropylmalate dehydratase, large subunit. 100.0
PRK05478466 isopropylmalate isomerase large subunit; Validated 100.0
cd01583382 IPMI 3-isopropylmalate dehydratase catalyzes the i 100.0
TIGR00139 712 h_aconitase homoaconitase. Homoaconitase, aconitas 100.0
cd01585380 AcnA_Bact Aconitase catalyzes the reversible isome 100.0
TIGR01342 658 acon_putative aconitate hydratase, putative, Aquif 100.0
cd01581436 AcnB Aconitate hydratase B catalyses the formation 100.0
PRK07229 646 aconitate hydratase; Validated 100.0
PF00330465 Aconitase: Aconitase family (aconitate hydratase); 100.0
TIGR01340 745 aconitase_mito aconitate hydratase, mitochondrial. 100.0
cd01584412 AcnA_Mitochondrial Aconitase catalyzes the reversi 100.0
PRK11413 751 putative hydratase; Provisional 100.0
cd01582363 Homoaconitase Homoaconitase and other uncharacteri 100.0
PRK09238835 bifunctional aconitate hydratase 2/2-methylisocitr 100.0
TIGR00117844 acnB aconitate hydratase 2. Aconitate hydratase (a 100.0
PLN00094938 aconitate hydratase 2; Provisional 100.0
cd01351389 Aconitase Aconitase catalytic domain; Aconitase ca 100.0
PRK09277 888 aconitate hydratase; Validated 100.0
PRK12881 889 acnA aconitate hydratase; Provisional 100.0
TIGR01341 876 aconitase_1 aconitate hydratase 1. This model repr 100.0
PLN00070 936 aconitate hydratase 100.0
PTZ00092 898 aconitate hydratase-like protein; Provisional 100.0
TIGR02333 858 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe 100.0
cd01586404 AcnA_IRP Aconitase A catalytic domain. Aconitase A 100.0
COG1048 861 AcnA Aconitase A [Energy production and conversion 100.0
KOG0453 778 consensus Aconitase/homoaconitase (aconitase super 100.0
KOG0452 892 consensus RNA-binding translational regulator IRP 100.0
COG1049852 AcnB Aconitase B [Energy production and conversion 100.0
KOG0454502 consensus 3-isopropylmalate dehydratase (aconitase 100.0
KOG0454 502 consensus 3-isopropylmalate dehydratase (aconitase 99.9
COG1679403 Predicted aconitase [General function prediction o 96.95
PF04412400 DUF521: Protein of unknown function (DUF521); Inte 95.52
cd01355389 AcnX Putative Aconitase X catalytic domain. Putati 84.27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-147  Score=1106.91  Aligned_cols=415  Identities=43%  Similarity=0.688  Sum_probs=401.7

Q ss_pred             CCHHHHHHHhhcCCCCCCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHHHHHHHH
Q 013449            1 MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVD   80 (443)
Q Consensus         1 ~Tl~EKIl~~~~~~~~v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~~~~~~~   80 (443)
                      |||+||||++|++++.+.|||.+.+++|++|.||.|+|++++.|++ .|.  +||+|+|+++++||++|+++.+.+++++
T Consensus         3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr~-~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~~~   79 (423)
T COG0065           3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLRE-AGR--KVRDPEKTVATFDHNVPTPDIKAAEQQK   79 (423)
T ss_pred             ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHHH-hCC--cccCccceEEEecCCCCCccHHHHHHHH
Confidence            7999999999999998999999999999999999999999999965 774  9999999999999999999999999999


Q ss_pred             HHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccccCCChhHHHHHhcc
Q 013449           81 ILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGT  160 (443)
Q Consensus        81 ~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala~GvG~td~a~~l~t  160 (443)
                      .+|+||+++||.+||+.++          +|||||+++|+|+++||++|||+||||||+|||||||+|+|+||++.+|+|
T Consensus        80 ~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vlat  149 (423)
T COG0065          80 ELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLAT  149 (423)
T ss_pred             HHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHHHh
Confidence            9999999999999998874          799999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhhhhhhcCceeeeccC
Q 013449          161 GKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPA  240 (443)
Q Consensus       161 g~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~NMa~E~GA~~~~f~~  240 (443)
                      |++||++||+++|+++|+|++|||||||||+||+++|.+|++|+++||+|+.+++|||++|||||||++|+|||+|+|+|
T Consensus       150 g~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii~p  229 (423)
T COG0065         150 GKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAP  229 (423)
T ss_pred             CceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceeeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHhhhcCC--CCCccccCCCCCcccEEEEEECCCcceeeecCCCCCcccccccccC--ceeeeEEEeccCCCChH
Q 013449          241 DGTTFKYLEDKTS--LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--VKIDRVYIGSCTGGKTE  316 (443)
Q Consensus       241 D~~t~~yl~~r~~--~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~~--~~Id~a~IGSCTng~~e  316 (443)
                      |++|++||+.+..  ..|+.+.+|+||+|+++++||+|+|||+||||++|+|+++++|+.+  ++|||||||||||||+|
T Consensus       230 De~T~~Y~k~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~i~iDqVFIGSCTNgRie  309 (423)
T COG0065         230 DETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDPIKIDQVFIGSCTNGRIE  309 (423)
T ss_pred             cHhHHHHHHHHhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCceeeceEEEeccCCccHH
Confidence            9999999997654  7789999999999999999999999999999999999999999999  99999999999999999


Q ss_pred             HHHHHHHHHHhCCCccc--ccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHHHcCccccCCCCCccccCCCCCccccCC
Q 013449          317 DFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMN  394 (443)
Q Consensus       317 Dl~~aA~iL~~~g~kv~--v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~~aGa~~~~~pgCg~C~G~~~~~~g~l~  394 (443)
                      |||+||+|||  |+|++  ||++|+|+|++||+||+++|        ++++|++|||.| ..||||||+|+|   +|+|+
T Consensus       310 DLr~AA~Ilk--grkva~~Vr~iVvP~S~~V~~qA~~eG--------l~~if~~AG~~~-~~pgCg~CLg~~---~gvL~  375 (423)
T COG0065         310 DLRAAAEILK--GRKVAPGVRAIVVPGSRRVKEQAEKEG--------LDKIFIEAGFEW-REPGCGPCLGMH---PGVLG  375 (423)
T ss_pred             HHHHHHHHhc--cCccCCCceEEEecCcHHHHHHHHHcc--------HHHHHHhcCcEE-cCCCCccccccC---CCcCC
Confidence            9999999999  77886  99999999999999999975        699999999999 589999999994   67999


Q ss_pred             CCcEEEeecCCCCCCCCCCCCCceEecCHHHHHHHHhcCccCCccccc
Q 013449          395 EPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL  442 (443)
Q Consensus       395 ~gev~vsT~NRNF~GR~G~~~~~~yLaSP~tvaAsAl~G~I~dp~~~~  442 (443)
                      +||+|+|||||||+||||++.+++||+||+++||||++|+|+|||+++
T Consensus       376 ~gE~c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~dpr~~~  423 (423)
T COG0065         376 PGERCASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIVDPRELL  423 (423)
T ss_pred             CCCEEeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEecChhhcC
Confidence            999999999999999999999999999999999999999999999874

>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>TIGR01343 hacA_fam homoaconitate hydratase family protein Back     alignment and domain information
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>PRK12466 isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PRK05478 isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information
>TIGR00139 h_aconitase homoaconitase Back     alignment and domain information
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle Back     alignment and domain information
>PRK07229 aconitate hydratase; Validated Back     alignment and domain information
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4 Back     alignment and domain information
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial Back     alignment and domain information
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK11413 putative hydratase; Provisional Back     alignment and domain information
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>TIGR00117 acnB aconitate hydratase 2 Back     alignment and domain information
>PLN00094 aconitate hydratase 2; Provisional Back     alignment and domain information
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK09277 aconitate hydratase; Validated Back     alignment and domain information
>PRK12881 acnA aconitate hydratase; Provisional Back     alignment and domain information
>TIGR01341 aconitase_1 aconitate hydratase 1 Back     alignment and domain information
>PLN00070 aconitate hydratase Back     alignment and domain information
>PTZ00092 aconitate hydratase-like protein; Provisional Back     alignment and domain information
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>cd01586 AcnA_IRP Aconitase A catalytic domain Back     alignment and domain information
>COG1048 AcnA Aconitase A [Energy production and conversion] Back     alignment and domain information
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism] Back     alignment and domain information
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1049 AcnB Aconitase B [Energy production and conversion] Back     alignment and domain information
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] Back     alignment and domain information
>COG1679 Predicted aconitase [General function prediction only] Back     alignment and domain information
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins Back     alignment and domain information
>cd01355 AcnX Putative Aconitase X catalytic domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
1ami_A 754 Steric And Conformational Features Of The Aconitase 3e-21
1nis_A 754 Crystal Structure Of Aconitase With Trans-Aconitate 3e-21
1aco_A 754 Crystal Structure Of Aconitase With Transaconitate 3e-21
5acn_A 754 Structure Of Activated Aconitase. Formation Of The 4e-21
1c97_A 753 S642a:isocitrate Complex Of Aconitase Length = 753 4e-21
1b0m_A 753 Aconitase R644q:fluorocitrate Complex Length = 753 4e-21
1c96_A 753 S642a:citrate Complex Of Aconitase Length = 753 4e-21
1b0j_A 754 Crystal Structure Of Aconitase With Isocitrate Leng 4e-21
2b3x_A 888 Structure Of An Orthorhombic Crystal Form Of Human 3e-15
3snp_A 908 Crystal Structure Analysis Of Iron Regulatory Prote 2e-10
1l5j_A865 Crystal Structure Of E. Coli Aconitase B. Length = 8e-08
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase Mechanism Length = 754 Back     alignment and structure 
Iteration: 1

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 30/343 (8%)
Query: 111 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 170
           G+ H  +  E +  PG +L+GTDSHT   G  G    G+G  DA  V+      LK P  
Sbjct: 144 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 202
Query: 171 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 230
           +   L G +  +   KD+IL++ G ++V G T   +E+ G  V+ +S     T+CNM  E
Sbjct: 203 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 262
Query: 231 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 282
            G    V P +    KYL      D  +L  E    +  D    +      ++S+L+P +
Sbjct: 263 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHI 322
Query: 283 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDF---LAAAKVFLASGKK 331
             P +PD             +E   + I    IGSCT    ED     A AK  LA G K
Sbjct: 323 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLK 382
Query: 332 VKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYA 391
            K    + P ++++   +             +Q+  + G    A+ +CG C+G       
Sbjct: 383 CKSQFTITPGSEQIRATIER--------DGYAQVLRDVGGIVLAN-ACGPCIGQWDRKDI 433
Query: 392 RMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTG 433
           +  E    V++ NRNF GR   + E   ++ SP    A A+ G
Sbjct: 434 KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG 476
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And Nitrocitrate Bound Length = 754 Back     alignment and structure
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound Length = 754 Back     alignment and structure
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The (4fe-4s) Cluster In The Crystal Length = 754 Back     alignment and structure
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex Length = 753 Back     alignment and structure
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate Length = 754 Back     alignment and structure
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888 Back     alignment and structure
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire Rna Length = 908 Back     alignment and structure
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B. Length = 865 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 1e-115
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 1e-65
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 Back     alignment and structure
 Score =  356 bits (914), Expect = e-115
 Identities = 97/488 (19%), Positives = 159/488 (32%), Gaps = 86/488 (17%)

Query: 1   MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
            +L +K+  RA     + PG      +  + + D  GP +    K         +  + +
Sbjct: 382 FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDL---ACLGFSADLV 438

Query: 61  VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
           +    H               L DF M +                     GV H  L   
Sbjct: 439 MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRP------------GDGVIHSWL--N 484

Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
               P  V  G DSHT         +   G+    F   TG + L +P ++     G+M 
Sbjct: 485 RMLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 541

Query: 181 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 230
             +  +DL+  I       G            +         +  L +E+   L +   E
Sbjct: 542 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 601

Query: 231 AGGKNGVVPADG-TTFKYLEDKTSL---------------------------PYEPVYSD 262
                  +  +     +YL     L                             E + +D
Sbjct: 602 RSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEAD 661

Query: 263 EKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 321
             A + +    D++ + EP++  P+ PD+       +  KID V+IGSC       F AA
Sbjct: 662 ADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNI-GHFRAA 720

Query: 322 AKVFLASGKKV--KVPTFLVPATQKVWMDV----YTLPVPGSGGKTCSQIFEEAGCDTPA 375
            K+      K       ++ P T+     +    Y              +F ++G     
Sbjct: 721 GKLL--DAHKGQLPTRLWVAPPTRMDAAQLTEEGYY------------SVFGKSGARI-E 765

Query: 376 SPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYV 435
            P C  C+G      AR+ +    VST+ RNFP R+G     ++LAS   AA +AL G +
Sbjct: 766 IPGCSLCMGN----QARVADGATVVSTSTRNFPNRLG-TGANVFLASAELAAVAALIGKL 820

Query: 436 TDPREFLE 443
             P E+  
Sbjct: 821 PTPEEYQT 828
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Length = 753 Back     alignment and structure
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 100.0
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 100.0
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 100.0
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Back     alignment and structure
Probab=100.00  E-value=7.4e-123  Score=1009.65  Aligned_cols=414  Identities=26%  Similarity=0.386  Sum_probs=379.6

Q ss_pred             CCHHHHHHHhhcCCCC----CCCCCeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCC-----
Q 013449            1 MTLTEKIFSRASEKPQ----LSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS-----   71 (443)
Q Consensus         1 ~Tl~EKIl~~~~~~~~----v~~Gd~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~-----   71 (443)
                      |||+||||++|+++..    +++||++.+++|++++||+|+|+++..|+. +|. .++++|+++  ++||++|+.     
T Consensus        35 ~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-~G~-~~v~~P~~~--~~DH~v~~~~~~~~  110 (753)
T 1c96_A           35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SGL-PKVAVPSTI--HCDHLIEAQLGGEK  110 (753)
T ss_dssp             CCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-HTC-SSCSSCEEE--ECCSSCCBSSCHHH
T ss_pred             CCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHH-hCC-CCCCCCCce--ecCCCCCCCCCccc
Confidence            7999999999998752    367899999999999999999999999965 674 579999874  799999987     


Q ss_pred             c-----HHHHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccc
Q 013449           72 D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA  146 (443)
Q Consensus        72 ~-----~~~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala  146 (443)
                      +     +...++++++|+||+++||. ||+           |++|||||+++|. ++.||+++||+||||||+||||+||
T Consensus       111 d~~~~~~~n~e~~~~l~~~a~~~gi~-~~~-----------pg~GI~Hqv~~E~-~~~Pg~~ivGtDSHT~t~GalG~la  177 (753)
T 1c96_A          111 DLRRAKDINQEVYNFLATAGAKYGVG-FWR-----------PGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLGGIC  177 (753)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHTCE-EEC-----------TTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGTCEE
T ss_pred             chhhhhhhHHHHHHHHHHHHHHCCCE-EEC-----------CCCCeeCeEeccc-ccCCCcEEecCCCCCCccchhhhhe
Confidence            2     23447789999999999994 554           5799999998886 9999999999999999999999999


Q ss_pred             cCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhh
Q 013449          147 TGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCN  226 (443)
Q Consensus       147 ~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~N  226 (443)
                      ||||++|++.+|+++++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++||+|||+||||++||+++||||||
T Consensus       178 ~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~TI~N  257 (753)
T 1c96_A          178 IGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICN  257 (753)
T ss_dssp             EECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHHHHH
T ss_pred             eccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccCCcchhhhhhc
Confidence            99999999999998888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCceeeeccCChhHHHHhhhcCCC--------CCccccCCCCCcccEEEEEECCCcceeeecCCCCCccccccccc
Q 013449          227 MVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK  298 (443)
Q Consensus       227 Ma~E~GA~~~~f~~D~~t~~yl~~r~~~--------~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~  298 (443)
                      |++|+||++|+||+|++|++||+.+++.        .|+.+.+|+||.|+++++||||+|+|+||+|++|+|++|++|+.
T Consensus       258 Ma~E~GA~~gifp~De~T~~YL~~~gr~~~~~~~~~y~~~l~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~e~~  337 (753)
T 1c96_A          258 MGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVG  337 (753)
T ss_dssp             HGGGGTCSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHH
T ss_pred             cchhhCcccccccCcHHHHHHHHhcCCcHHHHHHHHHHhhccCCCCCceeEEEEEEccccceeecCCCCCcceeEhHHhh
Confidence            9999999999999999999999998872        23678899999999999999999999999999999999999999


Q ss_pred             Cc--------eeeeEEEeccCCCChHHHHHHHHHHHh---CCCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHH
Q 013449          299 DV--------KIDRVYIGSCTGGKTEDFLAAAKVFLA---SGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFE  367 (443)
Q Consensus       299 ~~--------~Id~a~IGSCTng~~eDl~~aA~iL~~---~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~  367 (443)
                      +.        +||+||||||||+|+|||++||.|||+   +|++.+||++|+|+|++|+.++.++|        ++++|.
T Consensus       338 ~~~~~~~~~~~Vd~~~IGSCTN~~~~Dl~~AA~ilkga~~~~v~~~V~~~v~PgS~~V~~~~~~~G--------l~~~l~  409 (753)
T 1c96_A          338 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDG--------YAQVLR  409 (753)
T ss_dssp             HHHHHHTCCCBEEEEEEBTTTBCSHHHHHHHHHHHHHHHTTTCCCSSEEEECCSBHHHHHHHHHTT--------HHHHHH
T ss_pred             hhHhhcCCccceEEEEEecCCCCCHHHHHHHHHHhccHhhcCCCCCceEEEeCCCHHHHHHHHHcC--------cHHHHH
Confidence            88        999999999999999999999999997   66677799999999999999999975        799999


Q ss_pred             HcCccccCCCCCccccCCCCCccccCCCCcEEEeecCCCCCCCC-CCCCCceEecCHHHHHHHHhcCccC-Cccc
Q 013449          368 EAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRM-GHKEGQIYLASPYTAAASALTGYVT-DPRE  440 (443)
Q Consensus       368 ~aGa~~~~~pgCg~C~G~~~~~~g~l~~gev~vsT~NRNF~GR~-G~~~~~~yLaSP~tvaAsAl~G~I~-dp~~  440 (443)
                      +|||.| .+||||+|+|++.+..+..+++++|+||+||||+||| |++.+++|||||++||||||+|+|+ ||+.
T Consensus       410 ~aG~~i-~~~gCg~CiG~~~~~~~~~~~~~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~  483 (753)
T 1c96_A          410 DVGGIV-LANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPET  483 (753)
T ss_dssp             HTTEEE-CCSSCGGGGTCBCCCSSCTTCCEEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTT
T ss_pred             HcCcEE-ecCCceeeecCCCCcccccCCcceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCccc
Confidence            999999 6999999999976432345667789999999999999 5778899999999999999999999 7763
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Back     alignment and structure
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d1l5ja3490 c.83.1.1 (A:373-862) Aconitase B, C-terminal domai 1e-108
d2b3ya2629 c.83.1.1 (A:2-630) Iron-responsive element binding 8e-79
d1acoa2527 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain 2e-78
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 490 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Aconitase B, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  327 bits (839), Expect = e-108
 Identities = 94/482 (19%), Positives = 158/482 (32%), Gaps = 74/482 (15%)

Query: 1   MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 60
            +L +K+  RA     + PG      +  + + D  GP +    K         +  + +
Sbjct: 10  FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKD---LACLGFSADLV 66

Query: 61  VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 120
           +    H               L DF M +                     GV H  L   
Sbjct: 67  MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLR------------PGDGVIHSWL--N 112

Query: 121 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 180
               P  V  G DSHT             G+    F   TG + L +P ++     G+M 
Sbjct: 113 RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 169

Query: 181 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 230
             +  +DL+  I       G            +         +  L +E+   L +   E
Sbjct: 170 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 229

Query: 231 AGGKNGVVPA-DGTTFKYLEDKTSLPY---------------------------EPVYSD 262
                  +        +YL     L                             E + +D
Sbjct: 230 RSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEAD 289

Query: 263 EKASFLSEYRFDISKLEP-LVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 321
             A + +    D++ ++  ++  P+ PD+       +  KID V+IGSC       F AA
Sbjct: 290 ADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCM-TNIGHFRAA 348

Query: 322 AKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGA 381
            K+  A   ++    ++ P T+     +          +    +F ++G      P C  
Sbjct: 349 GKLLDAHKGQLPTRLWVAPPTRMDAAQLTE--------EGYYSVFGKSGARI-EIPGCSL 399

Query: 382 CLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 441
           C+G      AR+ +    VST+ RNFP R+G     ++LAS   AA +AL G +  P E+
Sbjct: 400 CMGNQ----ARVADGATVVSTSTRNFPNRLG-TGANVFLASAELAAVAALIGKLPTPEEY 454

Query: 442 LE 443
             
Sbjct: 455 QT 456
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 629 Back     information, alignment and structure
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 527 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d1acoa2527 Aconitase A, N-terminal domain {Cow (Bos taurus) [ 100.0
d1l5ja3490 Aconitase B, C-terminal domain {Escherichia coli [ 100.0
d2b3ya2629 Iron-responsive element binding protein 1, N-termi 100.0
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Aconitase A, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-123  Score=983.93  Aligned_cols=411  Identities=26%  Similarity=0.387  Sum_probs=369.2

Q ss_pred             CCHHHHHHHhhcCC---CCCCCC-CeEEEeeeEEEEcCCChHHHHHHHHHHhCCCCcccCCCcEEEeecCCCCCCcHH--
Q 013449            1 MTLTEKIFSRASEK---PQLSPG-DNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDER--   74 (443)
Q Consensus         1 ~Tl~EKIl~~~~~~---~~v~~G-d~v~~~vD~~~~hD~t~p~~~~~~~~~~g~~~~v~~p~~v~~~~DH~v~~~~~~--   74 (443)
                      |||+||||++|..+   ..+.+| ++|.++||++++||.|+|+++..|++ +|. .++++|.++  ++||++|+....  
T Consensus        35 ~TL~EKI~~~Hl~~~~~~~~~~g~~~v~~~vDrv~~hD~T~~~a~~~l~~-~g~-~~~~~p~~v--~~DH~v~~~~~~~~  110 (527)
T d1acoa2          35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SGL-PKVAVPSTI--HCDHLIEAQLGGEK  110 (527)
T ss_dssp             CCHHHHHHHTTBSCTTTCCCCTTTSEEEECCSEEEEEHHHHHHHHHHHHH-HTC-SSCSSCEEE--ECCSSCCBSSCHHH
T ss_pred             cCHHHHHHHHHhcccccCcccCCCceEEEecCEEEEEccchHHHHHHHHH-cCC-CCCCCCCCE--EeCCCcCCcccccc
Confidence            79999999999632   224444 68999999999999999999999975 674 689999876  459999885211  


Q ss_pred             --------HHHHHHHHHHHHHHcCcceeecccccCCcccCCCCCeeeeeeecccceecCCceEEcCCCCccCCCcccccc
Q 013449           75 --------ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA  146 (443)
Q Consensus        75 --------~~~~~~~~r~f~~~~gi~~f~~~~~~~~~~~~ppg~GI~Hq~l~e~~~~~PG~~vvg~DSHT~t~GalGala  146 (443)
                              ..+.+++++.+++++|+. ||+           |++|||||++.|+ +++||++|+|+||||||+||||+||
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~-----------pg~GI~H~v~~E~-~~~PG~~ivg~DSHT~t~GalGala  177 (527)
T d1acoa2         111 DLRRAKDINQEVYNFLATAGAKYGVG-FWR-----------PGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLGGIC  177 (527)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHTCE-EEC-----------TTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGTCEE
T ss_pred             chhHHHHHHHHHHHHHHHhhhhhccc-eee-----------cCCceEEEEcccc-cccCCeEEecCCCCcccccccccee
Confidence                    123456788889999885 444           5689999988885 9999999999999999999999999


Q ss_pred             cCCChhHHHHHhccceEEeecCCEEEEEEEeeCCCCCChHHHHHHHHHHhhccCCCceEEEEeccccccCChhhHhhHhh
Q 013449          147 TGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCN  226 (443)
Q Consensus       147 ~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~akDviL~i~~~l~~~g~~~~~vEF~G~~v~~Ls~~~R~ti~N  226 (443)
                      ||||++|++.+|+||++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++|++|||+|+++++||+++||||||
T Consensus       178 ~GvG~te~~~~~~t~~~~~~vPetv~v~l~G~l~~gvtakDviL~i~~~l~~~g~~g~~vEf~G~~i~~Ls~~~R~Ti~N  257 (527)
T d1acoa2         178 IGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICN  257 (527)
T ss_dssp             EECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHCTTTTBTEEEEEESGGGGGSCHHHHHHHHH
T ss_pred             ccCcHHHHHHHHhCCceeecCCcEEEEEEecCCCCCccHHHHHHHHHHHHhhcCCCceeEEEeccccceeccccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCceeeeccCChhHHHHhhhcCC--------CCCccccCCCCCcccEEEEEECCCcceeeecCCCCCccccccccc
Q 013449          227 MVVEAGGKNGVVPADGTTFKYLEDKTS--------LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECK  298 (443)
Q Consensus       227 Ma~E~GA~~~~f~~D~~t~~yl~~r~~--------~~~~~l~~D~~a~Y~~~i~iDls~leP~Va~P~~p~n~~~v~e~~  298 (443)
                      |++|+||++||||+|++|++||+.+++        ..|+.+++|+||.|+++++||||+|||+||+|++|||++|++++.
T Consensus       258 Ma~E~GA~~gif~~D~~t~~yl~~~gr~~~~~~~~~~~~~l~~D~~A~Y~~~ieiDls~ieP~Va~P~~Pd~~~pv~e~~  337 (527)
T d1acoa2         258 MGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEVG  337 (527)
T ss_dssp             HGGGGTBSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHH
T ss_pred             ccccccceeeEEeccHHHHHHHhhcCccchhhcchhhhhhcccccCCccceEEEEEhHhchhheecCCCCcceeeechhh
Confidence            999999999999999999999998876        235678899999999999999999999999999999999998876


Q ss_pred             C--------ceeeeEEEeccCCCChHHHHHHHHHHH---hCCCcccccEEEeCCcHHHHHHHhcCCCCCCCCchHHHHHH
Q 013449          299 D--------VKIDRVYIGSCTGGKTEDFLAAAKVFL---ASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFE  367 (443)
Q Consensus       299 ~--------~~Id~a~IGSCTng~~eDl~~aA~iL~---~~g~kv~v~~~v~P~S~~v~~~a~~~g~~g~~~~~~~~~l~  367 (443)
                      +        .+||+||||||||||+|||++||+|||   ++|++++||++|+|+|++|+.++.++|        ++++|.
T Consensus       338 ~~~~~~~~~~~Id~afIGSCTN~r~~Dl~~AA~ilk~~~~~g~~~~v~~~v~PgS~~V~~~~~~~G--------l~~~l~  409 (527)
T d1acoa2         338 SVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDG--------YAQVLR  409 (527)
T ss_dssp             HHHHHHTCCCBEEEEEECSTTSCSHHHHHHHHHHHHHHHHTTCCCSSEEEECCSBHHHHHHHHHTT--------HHHHHH
T ss_pred             hhhhhhccCceeeEeeeccccCCCchHHHHHHHHHhhHhhcCCccccceEEecCcHHHHHHHHHCc--------hHHHHH
Confidence            5        489999999999999999999999998   457778899999999999999999975        799999


Q ss_pred             HcCccccCCCCCccccCCCCCccccCCCCc--EEEeecCCCCCCCCC-CCCCceEecCHHHHHHHHhcCccC-Ccc
Q 013449          368 EAGCDTPASPSCGACLGGPKDTYARMNEPM--VCVSTTNRNFPGRMG-HKEGQIYLASPYTAAASALTGYVT-DPR  439 (443)
Q Consensus       368 ~aGa~~~~~pgCg~C~G~~~~~~g~l~~ge--v~vsT~NRNF~GR~G-~~~~~~yLaSP~tvaAsAl~G~I~-dp~  439 (443)
                      +|||.| .+||||+|+|++..  +.+.+||  +||||+||||+|||| ++.+++|||||+|||||||+|+|+ ||+
T Consensus       410 ~aG~~i-~~pgCg~CiG~~~~--~~~~~ge~~~~vsTsNRNF~GR~G~~~~a~~yLaSP~~vaA~Ai~G~It~dp~  482 (527)
T d1acoa2         410 DVGGIV-LANACGPCIGQWDR--KDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPE  482 (527)
T ss_dssp             HTTEEE-CCSSCGGGGTCBCC--CSSCTTCCEEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBSSCCTT
T ss_pred             HcCcEE-ccCcchhhccCCcc--cccccCcCceEEEcCCCCCCcCCCCCCCcceEeCCHHHHHHHHhhceeecCCC
Confidence            999999 69999999997432  3456665  799999999999998 556789999999999999999999 997
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure