Citrus Sinensis ID: 013464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MDADSKAARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSRFLQIV
Secondary Structure (PSIPRED)
cccccccccccEEcccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHccccccEEEEccccccccccccccHHHHHHHccccccccccccccccEEEEccHHHHHcccccHHHHHHHHcccHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccEEEEEEEEEEEccccEEEEccccccccccccEEEEEEcccccHHcccccccccHHHHHcccccccccccccccccccccEEEEccccccEEEEEEEEcccccEEcccccccEEEEEEEcEEEEEEcccEEEEccccEEEEEccccEEEEEcccEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccccccccccHHHHHHHHHcccccccccccEEcEEEEcccccccEEEEcccccccccccccccccccccccccccHHHHHHHcHHHHcHHHHHHHcccccEEEEEEEEcccccEEEcccHHHHHHHHHHccccccccccccEEEEEcccEEEEEEEccHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHccccccHHHHHHHHHHHccccHEHHHHHHHEEEEEccccEEEEcccccEEEEEEEEEEEEEcccccEEEEcccccccHHHHHHHcccccccHHHcccccccccEEEcccccccEEEEEEEEccccEEEEccccccEEEEEEEcEEEEEEcccEEEEcccEEEEEccccEEEEEEcccEEEEEEEEcHHHHccc
Coil and Loop (DISEMBL)
MDADSKAARRLLRLTCSvqkydwgrtgsdslvsklyglnsgkrtdidkpyaefwmgthesgpsflakkggaggVAGAVvngssanggcgeiVSLKSWILknpnvlgdkvlhrwgcdlpFLFKVLSVAKALSIQAHPDKELAKTLHKLLpnvykddnhkpEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRlhkesqvrpltEKEQLVLRLEKQYPADIGVIAAFFFNYvklnpgqalylganephayisgeciecmatsdnvvragltpkhrdVQTLCSMLTykqgfpeilkgfplspyitrylppfdefevdccilpkgtssvfpavsgpsiflvtdgegsmltashndavaegdvlfapanteinittsSKLQLYRAGVNSRFLQIV
Flexible Loop (DISEMBL)
MDADSKAARRLLRltcsvqkydwgrtgsdslvsklyglnsgkrtdIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLksrlhkesqvrpltekeqLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEInittssklqlyragvnsrflqiv
Low Complexity Region (SEG)
MDADSKAARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLakkggaggvagavvngssanggCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSRFLQIV
Disordered region (IsUnstruct)
*********RLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQ***EKAKFVLQSIFTNL*********************************LVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSRF****
Disordered Region (DISOPRED)
*************LTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAK*********************GEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAK*****LPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSRFLQIV
Disordered Region (DISEMBL)
********RRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSRFLQIV
Disordered Region (DISPRO)
*******ARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKK**********************IVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSRFLQIV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDADSKAARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSRFLQIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q9M884	432	Mannose-6-phosphate isome	yes	no	0.916	0.937	0.650	1e-162
Q9FZH5	441	Mannose-6-phosphate isome	no	no	0.943	0.945	0.617	1e-158
Q54PA0	452	Probable mannose-6-phosph	yes	no	0.923	0.902	0.404	2e-78
O43014	412	Mannose-6-phosphate isome	yes	no	0.889	0.953	0.386	1e-76
P34948	441	Mannose-6-phosphate isome	N/A	no	0.916	0.918	0.391	1e-75
Q3SZI0	423	Mannose-6-phosphate isome	yes	no	0.914	0.955	0.395	2e-74
Q76IQ2	429	Mannose-6-phosphate isome	yes	no	0.911	0.939	0.389	2e-74
Q8HXX2	423	Mannose-6-phosphate isome	N/A	no	0.916	0.957	0.396	3e-74
P34949	423	Mannose-6-phosphate isome	yes	no	0.916	0.957	0.394	4e-74
Q9GP38	433	Probable mannose-6-phosph	N/A	no	0.909	0.928	0.377	5e-74

>sp|Q9M884|MPI1_ARATH Mannose-6-phosphate isomerase 1 OS=Arabidopsis thaliana GN=PMI1 PE=1 SV=1

 Score =  572 bits (1475), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/424 (65%), Positives = 329/424 (77%), Gaps = 19/424 (4%)

Query: 16  CSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVA 75
           CSV+ YDWG+ GSDSLV ++Y  NS    D  +PYAE WMGTHESGPS+L    G+ GV 
Sbjct: 25  CSVKDYDWGKIGSDSLVYRVYAANSDYEIDPTRPYAELWMGTHESGPSYLEDADGSNGV- 83

Query: 76  GAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAH 135
                            +L+SWI +NP  LG++VL +WGCDLPFLFKVLSVA+ LSIQAH
Sbjct: 84  -----------------TLRSWITENPKSLGNRVLEKWGCDLPFLFKVLSVARPLSIQAH 126

Query: 136 PDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVG 195
           PDK+LAK +HK  PN+YKDDNHKPEMALA T+FEALC FI LQELKSV++ +PEI ELVG
Sbjct: 127 PDKKLAKKMHKAHPNLYKDDNHKPEMALAYTQFEALCGFIPLQELKSVIRAIPEIEELVG 186

Query: 196 SEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTE 255
           SEEAN+V  +   D EEK K V+++IFT LM+A  + T K  +KLK RLH ESQ R LT+
Sbjct: 187 SEEANQVFCITEHD-EEKVKSVVRTIFTLLMSADADTTKKIVSKLKRRLHMESQERQLTD 245

Query: 256 KEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNV 315
           KE+LVL+LEKQYP DIGVI+AFFFNYVKLNPG+ALYLGANEPHAY+ GEC+E MATSDNV
Sbjct: 246 KERLVLKLEKQYPNDIGVISAFFFNYVKLNPGEALYLGANEPHAYLFGECLEVMATSDNV 305

Query: 316 VRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTS 375
           VRAGLT K  D+QTLCSML+YK G+PEILKG  + PYITRYLPPF+EFEVD C LP G S
Sbjct: 306 VRAGLTSKPLDIQTLCSMLSYKLGYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGAS 365

Query: 376 SVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVN 435
           +VFP+V GPS+ LV  GEG M T +  D ++ GDVLF PA+TEI++ +SS L+LYRAG+N
Sbjct: 366 TVFPSVPGPSLLLVLQGEGRMSTEASADGISMGDVLFVPADTEIHLRSSSDLKLYRAGIN 425

Query: 436 SRFL 439
           SRFL
Sbjct: 426 SRFL 429

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions. Involved in the ascorbic acid (AsA) biosynthesis. Required during the endosperm development.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 8

>sp|Q9FZH5|MPI2_ARATH Mannose-6-phosphate isomerase 2 OS=Arabidopsis thaliana GN=PMI2 PE=1 SV=1

 Score =  559 bits (1441), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/431 (61%), Positives = 336/431 (77%), Gaps = 14/431 (3%)

Query: 13  RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAG 72
           RL C V+ Y+WG+ G +SLV++L   N+G+R D + PYAEFWMGTHESGPS +    G G
Sbjct: 24  RLRCFVKNYEWGKLGPESLVARLQEANTGQRVDSEIPYAEFWMGTHESGPSHVEFGSGHG 83

Query: 73  GVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSI 132
                       +  C  +V+LKSW+L NPN+LG KV+ +WGCDLPFLFKVLSV KALSI
Sbjct: 84  -----------VSDKC--MVTLKSWVLDNPNLLGSKVVDKWGCDLPFLFKVLSVTKALSI 130

Query: 133 QAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVE 192
           QAHP+K LA+ LH+  P +Y+D+NHKPE+ALA+T F+ALC F++L+ELK V+ NVPEI E
Sbjct: 131 QAHPNKALAEKLHREDPLLYRDNNHKPEIALAVTPFQALCGFVTLKELKEVITNVPEITE 190

Query: 193 LVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRP 252
           LVGS+ A+++ +V   D +E+ K V++ IFT LM+AS   T +  +++K+RL  E++ R 
Sbjct: 191 LVGSKAADQIFNVHEHDEDERIKSVVRLIFTQLMSASNNETKQVVSRMKNRLLLETKHRE 250

Query: 253 LTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATS 312
           L+EKE+LVL LEKQY  DIGVI+AFFFNYVKLNPG+ALYL ANEPHAYISG+C+ECMA S
Sbjct: 251 LSEKEKLVLELEKQYTGDIGVISAFFFNYVKLNPGEALYLDANEPHAYISGDCVECMAAS 310

Query: 313 DNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPK 372
           DNVVRAGLTPKHRDVQTLCSMLTYK G+PEILKGFPL+PY+TRYLPPFDEFEVD C LP+
Sbjct: 311 DNVVRAGLTPKHRDVQTLCSMLTYKLGYPEILKGFPLTPYVTRYLPPFDEFEVDHCDLPR 370

Query: 373 GTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSK-LQLYR 431
           G S+VFPAV GPS++LV +G+G + T S    V  GDVLF PA+ EI++T  S  ++LYR
Sbjct: 371 GKSTVFPAVPGPSVYLVIEGKGQLRTGSSKVLVNRGDVLFVPADIEIHVTGESDVMKLYR 430

Query: 432 AGVNSRFLQIV 442
           AGV+SRF Q +
Sbjct: 431 AGVSSRFFQTL 441

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

>sp|Q54PA0|MPI_DICDI Probable mannose-6-phosphate isomerase OS=Dictyostelium discoideum GN=mpi PE=3 SV=1

 Score =  293 bits (750), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 182/450 (40%), Positives = 254/450 (56%), Gaps = 42/450 (9%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDK---PYAEFWMGTHESGPSFLAK 67
           ++ L C  Q Y+WG+ GS+S V+KL    + + +DI K   PYAE WMG H S PS +  
Sbjct: 21  IVLLKCVSQNYEWGKYGSNSTVAKLLKGYAKECSDIIKETIPYAELWMGDHVSAPSKVEY 80

Query: 68  KGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVA 127
           K     +   +    +      E     +    + ++ G+ V  R+G D PFLFKVLS+ 
Sbjct: 81  KNKELKLREYI---DTVQKEINE--KSSTSSSSSSSIRGEIVEKRFGNDFPFLFKVLSIR 135

Query: 128 KALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNV 187
            ALSIQAHPD +LA+ L K  PN+YKD  HKPE+A+A T FEALCSF  L E++S +  +
Sbjct: 136 TALSIQAHPDSQLAQVLFKKYPNIYKDPYHKPEIAIATTPFEALCSFRPLSEIQSFIDTI 195

Query: 188 PEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKE 247
           PE    + +        +++ D +E     L+SI T+L+ A   + +    +L +RL+ E
Sbjct: 196 PEFKNSLPNN------LIKLDDCKE----YLKSIVTSLLKADGLLISNNLKELNNRLN-E 244

Query: 248 SQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIE 307
            +     + ++LVL+L  QYP D+GV  A+  NY+ L PG+AL+LGA EPHAYISG+C+E
Sbjct: 245 KREEERDDLDRLVLKLYSQYPGDVGVFFAYILNYIVLKPGEALFLGAGEPHAYISGDCVE 304

Query: 308 CMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEIL-----KGFPLSPYITRYLPPFDE 362
           CMA SDNVVRAGLTPK +DV TL  MLTY+ G P+++         L+ Y   Y PP DE
Sbjct: 305 CMAPSDNVVRAGLTPKLKDVDTLGDMLTYRTGRPDLVVPQQRPDLSLTNYRC-YQPPVDE 363

Query: 363 FEV------DCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAE---GDVLFA 413
           F+V      DCC      SS      GPSI LV  G  S+   S+   +     G +LF 
Sbjct: 364 FQVEYYHLDDCCKNINVYSS-----KGPSIVLVYSGNLSIENKSNQSTLNNLHTGSILFV 418

Query: 414 PANTE---INITTSSKLQLYRAGVNSRFLQ 440
           PANT+   I   +S  + +Y A V++R   
Sbjct: 419 PANTDYQFIQSDSSIPVSIYVASVSNRIFN 448

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

>sp|O43014|MPI_SCHPO Mannose-6-phosphate isomerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmi40 PE=3 SV=1

 Score =  287 bits (734), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 169/437 (38%), Positives = 242/437 (55%), Gaps = 44/437 (10%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGG 70
           + RL C V+ Y WG+ G +SL +KL     G   D + PYAE WMG+H SGPSF+ + G 
Sbjct: 1   MYRLKCDVKSYGWGKVGHESLAAKLAEAGYGFEVDPNTPYAELWMGSHPSGPSFVMQTGK 60

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKAL 130
                              E+++        P  +G+KV  ++G  LPFLFKVLS+ K L
Sbjct: 61  P----------------LSELLT--------PETVGEKVYKKYGKQLPFLFKVLSINKVL 96

Query: 131 SIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEI 190
           SIQAHPDK L K LHK  P  YKDDNHKPEMA+A+TEF+ALC F  +++++  L ++  +
Sbjct: 97  SIQAHPDKPLGKQLHKTNPKEYKDDNHKPEMAVALTEFDALCGFRPVKQIEQFLDSIAPL 156

Query: 191 VELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQV 250
            E VG EEA R     ++  E KA   L+++F  LM    +   + T +L      ++  
Sbjct: 157 REFVG-EEAVRQFKGTVKQDERKA---LETLFNELMHKDEKRIQEFTPQLVQLAKSDANN 212

Query: 251 RPLTEK-----EQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGEC 305
              TE        L++ L  Q+P DIG+    F NYV+L+PG+A++L A +PHAY+SG  
Sbjct: 213 FGGTEYGGKAFSDLIIHLNSQFPDDIGLFVTPFLNYVRLHPGEAVFLRALDPHAYVSGNI 272

Query: 306 IECMATSDNVVRAGLTPKHRDVQTLCSMLTYK--QGFPEILKGFPL-----SPYITRYLP 358
           IECMA SDNV+R G TPK +D++TL + LTY+      ++ +  P      S     Y P
Sbjct: 273 IECMAASDNVIRLGFTPKFKDIETLVNNLTYQTADAKSQLTQPVPFAKACGSGKTLLYDP 332

Query: 359 PFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHND--AVAEGDVLFAPAN 416
           P +EF +    +  G       ++GPSI LVT+G G +L     D  +++ G V F  AN
Sbjct: 333 PIEEFSILQTKVSPGQKQCIRGINGPSILLVTEGSG-ILNGDKGDVASISPGFVYFISAN 391

Query: 417 TEINIT-TSSKLQLYRA 432
             + I+ TS  + +Y+A
Sbjct: 392 FPLTISATSEPVVVYQA 408

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

>sp|P34948|MPI_CANAL Mannose-6-phosphate isomerase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PMI1 PE=1 SV=2

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 182/465 (39%), Positives = 241/465 (51%), Gaps = 60/465 (12%)

Query: 7   AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDID--KPYAEFWMGTHESGPSF 64
           ++ +L R+ C  Q YDWG+ GS S V++    NS     ID  KPYAE WMGTH S PS 
Sbjct: 2   SSEKLFRIQCGYQNYDWGKIGSSSAVAQFVH-NSDPSITIDETKPYAELWMGTHPSVPS- 59

Query: 65  LAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLF 121
                         +N  +          L+  +   P   LG+ ++ ++G   +LPFLF
Sbjct: 60  ----------KAIDLNNQT----------LRDLVTAKPQEYLGESIITKFGSSKELPFLF 99

Query: 122 KVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELK 181
           KVLS+ K LSIQAHPDK+L   LH   P  Y DDNHKPEMA+A+T+FE  C F  L +L 
Sbjct: 100 KVLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLA 159

Query: 182 SVLQNVPEIVELVGSEEANRVL-------HVEMQDGEEKAKFVLQSIFTNLMTASMEMTT 234
             L  VPE+ E++G E  +  +        V  QD     K +LQ +F  LM    ++  
Sbjct: 160 KTLATVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRK-LLQKVFGKLMNTDDDVIK 218

Query: 235 KATTKLKSRLHKESQVRPLTEKE--QLVLRLEKQYPADIGVI-AAFFFNYVKLNPGQALY 291
           + T KL  R  +E QV    +    +L+ RL KQ+P DIG+       N+V LN G+A++
Sbjct: 219 QQTAKLLERTDREPQVFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMF 278

Query: 292 LGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTY------KQGFPEILK 345
           L A +PHAYISG+ IECMA SDNVVRAG TPK +DV+ L  MLTY      KQ  P  L+
Sbjct: 279 LQAKDPHAYISGDIIECMAASDNVVRAGFTPKFKDVKNLVEMLTYSYESVEKQKMP--LQ 336

Query: 346 GFPLSP----YITRYLPPFDEFEVDCCIL--PKGTSSVFPAVSGPSIFLVTDGEGSMLTA 399
            FP S         Y PP  EF V   I    KG   V   ++GPSI + T+G+G++   
Sbjct: 337 EFPRSKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQIT 396

Query: 400 ---SHNDAVAEGDVLFAPANTEINITTSSKLQ-----LYRAGVNS 436
              S    +  G V F    + I +T  S  Q      YRA V +
Sbjct: 397 GDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVEA 441

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3SZI0|MPI_BOVIN Mannose-6-phosphate isomerase OS=Bos taurus GN=MPI PE=2 SV=3

 Score =  280 bits (716), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 239/440 (54%), Gaps = 36/440 (8%)

Query: 7   AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDI--DKPYAEFWMGTHESGPSF 64
           AA+R+  L+C VQ+Y WG+ GS+S V++L   +S     I  D+PYAE WMGTH  G   
Sbjct: 2   AAQRVFPLSCVVQQYAWGKMGSNSEVARLLA-SSDPLAQISEDRPYAELWMGTHPRG--- 57

Query: 65  LAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVL 124
                        +++   +    G+      WI  N + LG KV   +   LPFLFKVL
Sbjct: 58  ----------DAKILDNRISQKTLGQ------WIADNQDSLGSKVKDTFNGKLPFLFKVL 101

Query: 125 SVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVL 184
           SV  ALSIQAHP+KELA+ LH   P  Y D NHKPEMA+A+T F+ LC F  ++E+ + L
Sbjct: 102 SVETALSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFL 161

Query: 185 QNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRL 244
             VPE   L+G   A ++     QD E      L+S F++LM +  ++  +    L  R+
Sbjct: 162 TKVPEFQFLIGDNAAAQLKQSLSQDSEAVTS-ALRSCFSHLMKSEKKVVVEQLNLLVKRI 220

Query: 245 HKESQVRPLTEK--EQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYIS 302
            ++       E    +L+L+L +QYP DIG  A +F N + L PG+A++L AN PHAY+ 
Sbjct: 221 SQQVAAGNNMEDICGELLLQLHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLK 280

Query: 303 GECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLS-----PYITRYL 357
           G+C+ECMA SDN VRAGLTPK  DV TLC ML+Y    P   + FP +     PY++ Y 
Sbjct: 281 GDCVECMACSDNTVRAGLTPKFIDVPTLCEMLSYTPS-PSQDRLFPPARSPEDPYLSIYD 339

Query: 358 PPFDEFEVDCCILPKG-TSSVFPAVSGPSIFLVTDG--EGSMLTASHNDAVAEGDVLFAP 414
           PP  +F V    +P   T     A+   SI LV  G    S  TA     +  G VLF  
Sbjct: 340 PPVPDFTVMKVEVPGSVTEYKVLALDSASILLVVQGTVTASSPTAQAAIPLKRGGVLFIG 399

Query: 415 ANTEIN--ITTSSKLQLYRA 432
           AN  ++  +T    L ++RA
Sbjct: 400 ANESVSLKLTVPKDLLMFRA 419

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

>sp|Q76IQ2|MPI_CANGA Mannose-6-phosphate isomerase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=PMI1 PE=3 SV=1

 Score =  280 bits (715), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 175/449 (38%), Positives = 236/449 (52%), Gaps = 46/449 (10%)

Query: 10  RLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDID--KPYAEFWMGTHESGPSFLAK 67
           R  RL    Q+YDWG+ GS S V+K +  +S     ID  KPYAE WMGTH   PS    
Sbjct: 5   RFFRLDAGYQQYDWGKIGSSSAVAK-FAAHSDPSVKIDETKPYAELWMGTHSKLPS---- 59

Query: 68  KGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLFKVL 124
                      VN  +         +L   + KN   ++G+ V++++    +LPFLFKVL
Sbjct: 60  -----------VNHETK-------ATLNDILAKNSQELIGEDVINKFKSTNELPFLFKVL 101

Query: 125 SVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVL 184
           S+ K LSIQAHPDKEL K LH   P  Y DDNHKPEMA+AITEFE  C F  L+E+   L
Sbjct: 102 SIEKVLSIQAHPDKELGKKLHMEDPKNYPDDNHKPEMAVAITEFEGFCGFKPLEEIADEL 161

Query: 185 QNVPEIVELVGSEEANRVLHVEMQDGEEKA-------KFVLQSIFTNLMTASMEMTTKAT 237
           + +PE  ++VG E AN  +    + G E +       K +LQ +F  +MTA  ++  K  
Sbjct: 162 ETIPEFRDVVGDEVANEFIQ-NYKTGVENSSSACANNKKLLQKVFEKVMTAPCDILEKNA 220

Query: 238 TKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVI-AAFFFNYVKLNPGQALYLGANE 296
             +  R ++       ++  +LV+RL +Q+P D+G+       N+ KL PGQAL+L A +
Sbjct: 221 DGMAKRANENPSSFKSSDLPELVVRLNRQFPKDVGLFCGCLMLNHCKLQPGQALFLEAKD 280

Query: 297 PHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPE----ILKGFPLS-- 350
           PHAYI G+ IECMA SDNVVRAG TPK +DV+ L  MLTY+    E      + FP +  
Sbjct: 281 PHAYICGDIIECMAASDNVVRAGFTPKFKDVKNLVEMLTYRYDPVEKQVMSAEEFPRAGG 340

Query: 351 -PYITRYLPPFDEFEV-DCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEG 408
                 Y PP  EF V +     K   +    + GPSI + T GEG +           G
Sbjct: 341 DGATIMYNPPIAEFSVLETTFKNKTGKATVEGLKGPSIVITTAGEGYISADGQKLKAEPG 400

Query: 409 DVLFAPANTEINITTSSK-LQLYRAGVNS 436
            V F  AN  + + T+ K    YRA V +
Sbjct: 401 FVFFIGANVPVELETTDKDFTTYRAFVEA 429

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8HXX2|MPI_MACFA Mannose-6-phosphate isomerase OS=Macaca fascicularis GN=MPI PE=2 SV=3

 Score =  279 bits (713), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 174/439 (39%), Positives = 236/439 (53%), Gaps = 34/439 (7%)

Query: 7   AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDI--DKPYAEFWMGTHESGPSF 64
           AA R+  L+C+VQ+Y WG+ G +S V++L   +S     I  DKPYAE WMGTH  G   
Sbjct: 2   AAPRVFPLSCAVQQYAWGKMGYNSEVARLLA-SSDPLAQIAEDKPYAELWMGTHPRGD-- 58

Query: 65  LAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVL 124
                     A    NG S         +L  WI +N + LG KV   +  +LPFLFKVL
Sbjct: 59  ----------AKIFDNGISQK-------TLGQWIAENQDSLGSKVKDTFNGNLPFLFKVL 101

Query: 125 SVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVL 184
           SV   LSIQAHP+KELA+ LH   P  Y D NHKPEMA+A+T F+ LC F  ++E+ + L
Sbjct: 102 SVETPLSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFL 161

Query: 185 QNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRL 244
           + VPE   L+G E A  +      D +  A   LQS F++LM +  ++  +    L  R+
Sbjct: 162 KKVPEFQFLIGDEAATHLKQTMSHDSQAVAS-ALQSCFSHLMKSEKKVVAEQLNLLVKRI 220

Query: 245 HKESQVRPLTEK--EQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYIS 302
            ++       E    +L+L+L +QYP DIG  A +F N + L PG+A++L AN PHAY+ 
Sbjct: 221 SQQVAAGNNMEDIFGELLLQLHQQYPGDIGCFAIYFLNLLNLKPGEAMFLEANVPHAYLK 280

Query: 303 GECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPL----SPYITRYLP 358
           G+C+ECMA SDN VRAGLTPK  DV TLC ML+Y     +     P      PY++ Y P
Sbjct: 281 GDCVECMACSDNTVRAGLTPKFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDP 340

Query: 359 PFDEFEVDCCILPKG-TSSVFPAVSGPSIFLVTDGE--GSMLTASHNDAVAEGDVLFAPA 415
           P  +F +    +P   T     A+   SI LV  G    S  T      +  G VLF  A
Sbjct: 341 PVPDFAIMKMEVPGSVTEYKVLALDSASILLVVQGTVIASTPTTQTPIPLQRGGVLFIGA 400

Query: 416 NTEIN--ITTSSKLQLYRA 432
           N  ++  +T    L ++RA
Sbjct: 401 NESVSLKLTEPKDLLIFRA 419

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Macaca fascicularis (taxid: 9541)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

>sp|P34949|MPI_HUMAN Mannose-6-phosphate isomerase OS=Homo sapiens GN=MPI PE=1 SV=2

 Score =  278 bits (712), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 173/439 (39%), Positives = 238/439 (54%), Gaps = 34/439 (7%)

Query: 7   AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDI--DKPYAEFWMGTHESGPSF 64
           AA R+  L+C+VQ+Y WG+ GS+S V++L   +S     I  DKPYAE WMGTH  G   
Sbjct: 2   AAPRVFPLSCAVQQYAWGKMGSNSEVARLLA-SSDPLAQIAEDKPYAELWMGTHPRGD-- 58

Query: 65  LAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVL 124
                     A  + N  S         +L  WI +N + LG KV   +  +LPFLFKVL
Sbjct: 59  ----------AKILDNRISQK-------TLSQWIAENQDSLGSKVKDTFNGNLPFLFKVL 101

Query: 125 SVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVL 184
           SV   LSIQAHP+KELA+ LH   P  Y D NHKPEMA+A+T F+ LC F  ++E+ + L
Sbjct: 102 SVETPLSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFL 161

Query: 185 QNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRL 244
           + VPE   L+G E A  +      D +  A   LQS F++LM +  ++  +    L  R+
Sbjct: 162 KKVPEFQFLIGDEAATHLKQTMSHDSQAVAS-SLQSCFSHLMKSEKKVVVEQLNLLVKRI 220

Query: 245 HKESQVRPLTEK--EQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYIS 302
            +++      E    +L+L+L +QYP DIG  A +F N + L PG+A++L AN PHAY+ 
Sbjct: 221 SQQAAAGNNMEDIFGELLLQLHQQYPGDIGCFAIYFLNLLTLKPGEAMFLEANVPHAYLK 280

Query: 303 GECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPL----SPYITRYLP 358
           G+C+ECMA SDN VRAGLTPK  DV TLC ML+Y     +     P      PY++ Y P
Sbjct: 281 GDCVECMACSDNTVRAGLTPKFIDVPTLCEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDP 340

Query: 359 PFDEFEVDCCILPKG-TSSVFPAVSGPSIFLVTDGE--GSMLTASHNDAVAEGDVLFAPA 415
           P  +F +    +P   T     A+   SI L+  G    S  T      +  G VLF  A
Sbjct: 341 PVPDFTIMKTEVPGSVTEYKVLALDSASILLMVQGTVIASTPTTQTPIPLQRGGVLFIGA 400

Query: 416 NTEIN--ITTSSKLQLYRA 432
           N  ++  +T    L ++RA
Sbjct: 401 NESVSLKLTEPKDLLIFRA 419

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9GP38|MPI_ECHMU Probable mannose-6-phosphate isomerase OS=Echinococcus multilocularis GN=PMIH PE=2 SV=1

 Score =  278 bits (711), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 244/458 (53%), Gaps = 56/458 (12%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKR-TDIDKPYAEFWMGTHESGPSFLAKKG 69
           +LRL C+ Q+YDWG+ G +S+V KL   +     + +D PYAE WMGTH SG S L    
Sbjct: 1   MLRLKCASQRYDWGKVGVNSIVYKLQVASENPDISHVDLPYAELWMGTHPSGSSCLWDNP 60

Query: 70  GAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKA 129
                                 V+L + I +NP  LG   L  +G  LPFLFKVLSVAKA
Sbjct: 61  H---------------------VTLAAHIQENPASLGKPSLIYFGRRLPFLFKVLSVAKA 99

Query: 130 LSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPE 189
           LSIQAHPDK++A  LH   P++YKD +HKPEMA+A+T+FEAL  F  L ++ + +Q  PE
Sbjct: 100 LSIQAHPDKKMAVRLHAEQPDLYKDGSHKPEMAIALTDFEALLGFRPLNQILAFIQAFPE 159

Query: 190 IVEL----VGSEEANRVLHVE---------MQDGEEKAKFVLQSIFTNLMTASMEMTTKA 236
           + EL    + S E  R +            M+   EK +  ++S+     T S  +    
Sbjct: 160 LAELTTLELPSPEEKRDVQPPSIKQLYSNLMRSSPEKVESTIKSLLNRFTTGSKSVCDPP 219

Query: 237 TTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANE 296
            + L   L +E  V+ L +   L LRL + +P D+G ++ FF NY++L  G+A++L AN 
Sbjct: 220 LSILGVDLQEE-DVQALVD---LFLRLTQAFPGDVGCLSIFFLNYIRLKSGEAIFLKANT 275

Query: 297 PHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKG------FPLS 350
           PHAY+SG+C+ECMA SDNVVRAGLTPK +DV+ L  ML Y      +  G       P  
Sbjct: 276 PHAYLSGDCVECMANSDNVVRAGLTPKFKDVERLLEMLDYTPLTDSLRLGATQPIPTPEG 335

Query: 351 PYITRYLPPFDEFEVDCCILPKGTSSV-FPAVSGPSIFLVTDGEGSMLTASHNDAVAE-- 407
             +  ++PP  EF VD       +     P+V   SI L   G+G++   S  +A ++  
Sbjct: 336 ISMKSFIPPVSEFAVDVIQFDAESRGFSLPSVPTASILLFLHGQGTITCPSTGEACSQET 395

Query: 408 ----GDVLFAPANTEINITTSS----KLQLYRAGVNSR 437
               G V F PA+  +N+ +       L  +RA VN +
Sbjct: 396 KFGPGFVYFVPADMIVNLVSKEDRKGSLHAFRAYVNRK 433

Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.

Echinococcus multilocularis (taxid: 6211)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
224079321	440	predicted protein [Populus trichocarpa]	0.952	0.956	0.726	0.0
225452055	420	PREDICTED: mannose-6-phosphate isomerase	0.929	0.978	0.714	0.0
147841344	455	hypothetical protein VITISV_011365 [Viti	0.929	0.903	0.712	0.0
60617303	428	phosphomannose isomerase [Cyamopsis tetr	0.943	0.974	0.668	1e-170
356569059	421	PREDICTED: mannose-6-phosphate isomerase	0.934	0.980	0.677	1e-168
356527492	421	PREDICTED: mannose-6-phosphate isomerase	0.934	0.980	0.679	1e-168
356545795	437	PREDICTED: mannose-6-phosphate isomerase	0.945	0.956	0.640	1e-163
296087268	365	unnamed protein product [Vitis vinifera]	0.825	1.0	0.727	1e-161
297832896	432	hypothetical protein ARALYDRAFT_477494 [	0.916	0.937	0.650	1e-161
15232927	432	mannose-6-phosphate isomerase [Arabidops	0.916	0.937	0.650	1e-161

>gi|224079321|ref|XP_002305820.1| predicted protein [Populus trichocarpa] gi|222848784|gb|EEE86331.1| predicted protein [Populus trichocarpa]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/435 (72%), Positives = 360/435 (82%), Gaps = 14/435 (3%)

Query: 11  LLRLTCSVQKYDWGRTGSD-SLVSKLYGLNSGKRTDIDK--PYAEFWMGTHESGPSFLAK 67
           L RL CSVQ YDWG+ G++ S V++LY LNSG   +++K  P+AEFWMGTH SGPSF+ +
Sbjct: 15  LKRLRCSVQNYDWGKKGTEGSEVARLYELNSGSDIELEKKKPFAEFWMGTHGSGPSFVVE 74

Query: 68  KGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVA 127
            G        V NG S   G    + LK WILKNPNVLGD VL +WGCDLPFLFKVLSVA
Sbjct: 75  SG--------VENGDSIGSGS---MGLKEWILKNPNVLGDGVLDKWGCDLPFLFKVLSVA 123

Query: 128 KALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNV 187
           KALSIQAHPDKELAK LHKL PN YKDDNHKPEMALAITEFEALC FIS+ ELK VL++V
Sbjct: 124 KALSIQAHPDKELAKVLHKLQPNRYKDDNHKPEMALAITEFEALCGFISIGELKGVLRDV 183

Query: 188 PEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKE 247
           PEIVE+VGS EAN+VL +  QD EEK K VL+S FT LM+AS E+T +A +KLKSRL+ E
Sbjct: 184 PEIVEVVGSAEANQVLQIHEQDHEEKVKSVLRSAFTQLMSASQEITAEAISKLKSRLYME 243

Query: 248 SQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIE 307
           S++R LT KEQLVL+LEKQYPADIGVI+AFF NYVKLN G+ALYLGANEPHAY+ GECIE
Sbjct: 244 SKIRQLTGKEQLVLQLEKQYPADIGVISAFFLNYVKLNSGEALYLGANEPHAYLYGECIE 303

Query: 308 CMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDC 367
           CMATSDNVVRAGLTPK RD+QTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVD 
Sbjct: 304 CMATSDNVVRAGLTPKLRDIQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDR 363

Query: 368 CILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKL 427
           CILP+G S+VFPA+ GPSIFLV  G+G+M T S  D V EGDVLFAPAN+EI+++T+S+L
Sbjct: 364 CILPRGASTVFPAIPGPSIFLVMVGDGAMCTGSSKDVVMEGDVLFAPANSEISVSTASEL 423

Query: 428 QLYRAGVNSRFLQIV 442
            LYRAGVNSRF Q +
Sbjct: 424 HLYRAGVNSRFFQTL 438

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452055|ref|XP_002283926.1| PREDICTED: mannose-6-phosphate isomerase [Vitis vinifera]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/431 (71%), Positives = 352/431 (81%), Gaps = 20/431 (4%)

Query: 9   RRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKK 68
           +RL RL CSVQ YDWGR GS+S V++L+ +NSG    +DKPYAE WMGTHESGPSFL   
Sbjct: 10  KRLRRLRCSVQNYDWGRLGSESTVARLFSMNSGAEVQLDKPYAELWMGTHESGPSFLI-- 67

Query: 69  GGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAK 128
                             G G+  +LKSWI +NPNVLGD+V+ +WG DLPFLFKVLSVAK
Sbjct: 68  ------------------GEGKSRTLKSWISENPNVLGDEVVEKWGSDLPFLFKVLSVAK 109

Query: 129 ALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVP 188
           ALSIQAHPDKELA+TLHKL P+VYKDDNHKPEMALAITEF+ALC F+SL ELK VL++VP
Sbjct: 110 ALSIQAHPDKELARTLHKLQPHVYKDDNHKPEMALAITEFQALCGFVSLGELKIVLKDVP 169

Query: 189 EIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKES 248
           EIVE+VGS +AN+VL V  +DG+EK K VLQSIFT LM+A+ EM +K  TKLK RL  ES
Sbjct: 170 EIVEVVGSADANQVLDVSEEDGKEKVKSVLQSIFTQLMSANKEMVSKIITKLKIRLQMES 229

Query: 249 QVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIEC 308
           QVR LT+KEQLVLRLEKQYP D+GVI+AFFFNYVKLNPG+ALYLGANEPHAY+ GECIEC
Sbjct: 230 QVRQLTDKEQLVLRLEKQYPGDVGVISAFFFNYVKLNPGEALYLGANEPHAYLYGECIEC 289

Query: 309 MATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCC 368
           MATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEIL+G PL+PY  RYLPPFDEFEVDCC
Sbjct: 290 MATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILQGVPLNPYTRRYLPPFDEFEVDCC 349

Query: 369 ILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQ 428
            LPKG S++FPAV GPSIF+VT GEG+    +  + V EGDVLFAPA+TEI+  TS++L 
Sbjct: 350 SLPKGASAMFPAVEGPSIFVVTVGEGTAHVGACEEQVGEGDVLFAPADTEISFGTSTQLN 409

Query: 429 LYRAGVNSRFL 439
           LYRAGVNSR  
Sbjct: 410 LYRAGVNSRLF 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841344|emb|CAN60179.1| hypothetical protein VITISV_011365 [Vitis vinifera]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/431 (71%), Positives = 352/431 (81%), Gaps = 20/431 (4%)

Query: 9   RRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKK 68
           +RL RL CSVQ YDWGR GS+S V++L+ +NSG    +DKPYAE WMGTHESGPSFL   
Sbjct: 45  KRLRRLRCSVQNYDWGRLGSESTVARLFSMNSGAEVQLDKPYAELWMGTHESGPSFLI-- 102

Query: 69  GGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAK 128
                             G G+  +LKSWI +NPNVLGD+V+ +WG DLPFLFKVLSVAK
Sbjct: 103 ------------------GEGKSRTLKSWISENPNVLGDEVVEKWGSDLPFLFKVLSVAK 144

Query: 129 ALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVP 188
           ALSIQAHPDKELA+TLHKL P+VYKDDNHKPEMALAITEF+ALC F+SL ELK VL++VP
Sbjct: 145 ALSIQAHPDKELARTLHKLQPHVYKDDNHKPEMALAITEFQALCGFVSLXELKIVLKDVP 204

Query: 189 EIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKES 248
           EIVE+VGS +AN+VL V  +DG+EK K VLQSIFT LM+A+ EM +K  TKLK RL  ES
Sbjct: 205 EIVEVVGSADANQVLDVSEEDGKEKVKSVLQSIFTQLMSANKEMVSKIITKLKIRLQMES 264

Query: 249 QVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIEC 308
           Q+R LT+KEQLVLRLEKQYP D+GVI+AFFFNYVKLNPG+ALYLGANEPHAY+ GECIEC
Sbjct: 265 QMRQLTDKEQLVLRLEKQYPGDVGVISAFFFNYVKLNPGEALYLGANEPHAYLYGECIEC 324

Query: 309 MATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCC 368
           MATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEIL+G PL+PY  RYLPPFDEFEVDCC
Sbjct: 325 MATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILQGVPLNPYTRRYLPPFDEFEVDCC 384

Query: 369 ILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQ 428
            LPKG S++FPAV GPSIF+VT GEG+    +  + V EGDVLFAPA+TEI+  TS++L 
Sbjct: 385 SLPKGASAMFPAVEGPSIFVVTVGEGTAHVGACEEQVGEGDVLFAPADTEISFGTSTQLN 444

Query: 429 LYRAGVNSRFL 439
           LYRAGVNSR  
Sbjct: 445 LYRAGVNSRLF 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60617303|gb|AAX31279.1| phosphomannose isomerase [Cyamopsis tetragonoloba]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 293/438 (66%), Positives = 343/438 (78%), Gaps = 21/438 (4%)

Query: 5   SKAARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSF 64
           +K  + L RL CSV+ YDWG  G  S V++LY LNSG +   D+PYAE WMGTH+S PSF
Sbjct: 8   TKQHQHLQRLHCSVKNYDWGLPGRISNVARLYALNSGSQFHPDEPYAELWMGTHDSEPSF 67

Query: 65  LAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVL 124
           L   G                    + V+LK+WI +NP+VLG+KVL +WGCDLPFLFKVL
Sbjct: 68  LVSNGA-------------------QRVTLKAWISQNPDVLGEKVLQKWGCDLPFLFKVL 108

Query: 125 SVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVL 184
           SV KALSIQAHPDKELA+TLHKL PN+YKD NHKPEMALA+T+FEALC FI+ +ELK+VL
Sbjct: 109 SVGKALSIQAHPDKELARTLHKLQPNLYKDGNHKPEMALAMTDFEALCGFITPKELKAVL 168

Query: 185 QNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRL 244
             VPE+VELVG+  AN +L    QDGEEK K VLQ++FT+LM+AS E  T A  +LKSRL
Sbjct: 169 HTVPEVVELVGAANANLILQTRDQDGEEKVKPVLQTVFTHLMSASKEKVTDAVNRLKSRL 228

Query: 245 HKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGE 304
           HKES+VR LT+KEQLVLRLEKQYPAD+GVIAAFF N VKL+PG+AL+LGANEPHAY+ GE
Sbjct: 229 HKESEVRQLTDKEQLVLRLEKQYPADVGVIAAFFLNLVKLSPGEALFLGANEPHAYLHGE 288

Query: 305 CIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFE 364
           CIECMATSDNVVRAGL+PKHRDVQTLCSMLTYKQG PEIL G PL+PY+ +Y PPF EFE
Sbjct: 289 CIECMATSDNVVRAGLSPKHRDVQTLCSMLTYKQGSPEILPGVPLNPYVKKYTPPFKEFE 348

Query: 365 VDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--SHNDAVAEGDVLFAPANTEINIT 422
           +D CILP+G + VFPAV GPSIFLVT GEG M T   S    V+EGDVLFA A TEI++T
Sbjct: 349 IDRCILPQGKTVVFPAVPGPSIFLVTVGEGVMNTGSPSKEQVVSEGDVLFAAAYTEISVT 408

Query: 423 TSSKLQLYRAGVNSRFLQ 440
           ++S+L LYR GVNSRF Q
Sbjct: 409 SASELHLYRTGVNSRFFQ 426

Source: Cyamopsis tetragonoloba

Species: Cyamopsis tetragonoloba

Genus: Cyamopsis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569059|ref|XP_003552724.1| PREDICTED: mannose-6-phosphate isomerase-like [Glycine max]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/431 (67%), Positives = 340/431 (78%), Gaps = 18/431 (4%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGG 70
           L RL CSV+ YDWG  G  S V++L+ LNS      + PYAE WMGTH+SGPSFLA   G
Sbjct: 6   LQRLHCSVKNYDWGLPGRVSEVARLHALNSASEFHAEDPYAELWMGTHDSGPSFLASSNG 65

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKAL 130
                       + NG     VSLK+WI +NP+VLG KVLH+WG DLPFLFKVLSV KAL
Sbjct: 66  ------------NENG-----VSLKAWISENPDVLGHKVLHKWGSDLPFLFKVLSVGKAL 108

Query: 131 SIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEI 190
           SIQAHPDKELA+TLHKL P++YKD NHKPEMALA+T FEALC FI+L+ELK VL  VPEI
Sbjct: 109 SIQAHPDKELARTLHKLHPDLYKDGNHKPEMALALTNFEALCGFITLKELKGVLHTVPEI 168

Query: 191 VELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQV 250
           VELVG+   N VL    QDGEEK K VLQ++FT+LM+AS +  T A  +LKSRL KES+V
Sbjct: 169 VELVGATNTNLVLQTNDQDGEEKVKPVLQAVFTDLMSASKDRVTDAVNRLKSRLLKESEV 228

Query: 251 RPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMA 310
           R LT+KEQLVLRLEKQYPAD+GVIAAFF N+VKLNPG+AL+LGANEPHAY+SGEC+ECMA
Sbjct: 229 RQLTDKEQLVLRLEKQYPADVGVIAAFFLNHVKLNPGEALFLGANEPHAYLSGECVECMA 288

Query: 311 TSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCIL 370
           TSDNVVRAGLTPKHRDVQTLCSMLTYKQG PEIL+G  ++PY+ +Y PPF+EFE+D CIL
Sbjct: 289 TSDNVVRAGLTPKHRDVQTLCSMLTYKQGSPEILRGVSVNPYVNKYTPPFEEFEIDRCIL 348

Query: 371 PKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITTSSKLQL 429
           P+G + VFPAV GPSIFLVT GEG+M T       V EGDVLFA ANTEI++T++S+L L
Sbjct: 349 PQGETVVFPAVPGPSIFLVTVGEGTMNTGLPKGHVVTEGDVLFAAANTEISVTSASELNL 408

Query: 430 YRAGVNSRFLQ 440
           YR GVNS+F Q
Sbjct: 409 YRTGVNSKFFQ 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527492|ref|XP_003532343.1| PREDICTED: mannose-6-phosphate isomerase-like [Glycine max]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/431 (67%), Positives = 340/431 (78%), Gaps = 18/431 (4%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGG 70
           L RL CSV+ YDWG  G  S V++L+ LNS  +   + P+AE WMGTH+SGPSFLA    
Sbjct: 6   LQRLHCSVKNYDWGLPGHVSEVARLHALNSASQLHAEDPFAELWMGTHDSGPSFLA---- 61

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKAL 130
                      SS   G G  VSLK+WI +NP+VLGDKVLH+WG DLPFLFKVLSV KAL
Sbjct: 62  -----------SSNRNGNG--VSLKAWISENPDVLGDKVLHKWGSDLPFLFKVLSVGKAL 108

Query: 131 SIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEI 190
           SIQAHPDKELA+TLHKL P++YKD NHKPEMALAIT FEALC FI+L+ELK VL  VPEI
Sbjct: 109 SIQAHPDKELARTLHKLHPDLYKDANHKPEMALAITSFEALCGFITLKELKGVLHTVPEI 168

Query: 191 VELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQV 250
           VELVG+   N VL    QDGEEK K VLQ++FT+LM+A  +  T A  +LKSRL KES+V
Sbjct: 169 VELVGATNTNLVLQTNDQDGEEKVKPVLQAVFTDLMSACKDRVTDAVNRLKSRLLKESEV 228

Query: 251 RPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMA 310
           R LT+KEQLVL+LEKQYPAD+GVIAAFF N+VKLNPG+AL+LGANEPHAY+SGEC+ECMA
Sbjct: 229 RQLTDKEQLVLQLEKQYPADVGVIAAFFLNHVKLNPGEALFLGANEPHAYLSGECVECMA 288

Query: 311 TSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCIL 370
           TSDNVVRAGLTPKHRDVQTLCSMLTYKQG PEIL G  ++PY+ +Y PPF+EFE+D CIL
Sbjct: 289 TSDNVVRAGLTPKHRDVQTLCSMLTYKQGSPEILHGVSVNPYVNKYTPPFEEFEIDRCIL 348

Query: 371 PKGTSSVFPAVSGPSIFLVTDGEGSMLTAS-HNDAVAEGDVLFAPANTEINITTSSKLQL 429
           P+G + VFPAV GPSIFLVT GEG+M T S     V EGDVLFA ANTEI +T++S+L L
Sbjct: 349 PQGETVVFPAVPGPSIFLVTVGEGTMNTGSPKGHVVTEGDVLFAAANTEIRVTSASELHL 408

Query: 430 YRAGVNSRFLQ 440
           YR GVNS+F Q
Sbjct: 409 YRTGVNSKFFQ 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545795|ref|XP_003541320.1| PREDICTED: mannose-6-phosphate isomerase-like [Glycine max]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/442 (64%), Positives = 344/442 (77%), Gaps = 24/442 (5%)

Query: 4   DSKAARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGK----RTDIDKPYAEFWMGTHE 59
           ++  + ++  L CSV+ Y+WG+   DSLV+KL+ +NSG     + D D+PYAE WMG+H 
Sbjct: 13  ENNNSNKVQGLHCSVKNYEWGKPCRDSLVAKLFSMNSGSLQSSQLDEDQPYAELWMGSHV 72

Query: 60  SGPSFLAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPF 119
           SGPSF+            V +GS         V+LKSW+L+NPNVLG KV+ +WG DLPF
Sbjct: 73  SGPSFI------------VFDGSQQR------VTLKSWLLENPNVLGPKVVEKWGGDLPF 114

Query: 120 LFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQE 179
           LFKVLSV KALSIQAHPDKELA+TLHKL P+VYKD NHKPEMALA+TEFEALC F++L+E
Sbjct: 115 LFKVLSVDKALSIQAHPDKELARTLHKLHPDVYKDGNHKPEMALAVTEFEALCGFVTLKE 174

Query: 180 LKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTK 239
           LK+VL  VPE+VELV +E  N VL +  +DGEEK K +L+S+FT++M+A  E    A  +
Sbjct: 175 LKAVL-TVPEVVELVVAENVNSVLQITDEDGEEKVKPILKSLFTDIMSAGKERVAGAVDR 233

Query: 240 LKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHA 299
           L+SRLHKESQVR LTEKEQLVLRLEKQYP+D+GVIAAFF N+VKL PG+AL+LGANEPHA
Sbjct: 234 LRSRLHKESQVRQLTEKEQLVLRLEKQYPSDVGVIAAFFLNHVKLAPGEALFLGANEPHA 293

Query: 300 YISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPP 359
           YI GECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQG PEIL+G P++ Y+ +Y+PP
Sbjct: 294 YICGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGSPEILRGVPINQYVNKYIPP 353

Query: 360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHND-AVAEGDVLFAPANTE 418
           F+EFE+DCCILP+G   VFPAV GPSIFLVT GEG M T S     + EG VLF  ANTE
Sbjct: 354 FEEFEIDCCILPQGEKVVFPAVPGPSIFLVTVGEGMMTTESPKGYPITEGHVLFVAANTE 413

Query: 419 INITTSSKLQLYRAGVNSRFLQ 440
           I ++++ +L L+R GVNSRF Q
Sbjct: 414 ITVSSAPQLHLFRTGVNSRFFQ 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087268|emb|CBI33642.3| unnamed protein product [Vitis vinifera]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/385 (72%), Positives = 317/385 (82%), Gaps = 20/385 (5%)

Query: 55  MGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWG 114
           MGTHESGPSFL                     G G+  +LKSWI +NPNVLGD+V+ +WG
Sbjct: 1   MGTHESGPSFLI--------------------GEGKSRTLKSWISENPNVLGDEVVEKWG 40

Query: 115 CDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSF 174
            DLPFLFKVLSVAKALSIQAHPDKELA+TLHKL P+VYKDDNHKPEMALAITEF+ALC F
Sbjct: 41  SDLPFLFKVLSVAKALSIQAHPDKELARTLHKLQPHVYKDDNHKPEMALAITEFQALCGF 100

Query: 175 ISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTT 234
           +SL ELK VL++VPEIVE+VGS +AN+VL V  +DG+EK K VLQSIFT LM+A+ EM +
Sbjct: 101 VSLGELKIVLKDVPEIVEVVGSADANQVLDVSEEDGKEKVKSVLQSIFTQLMSANKEMVS 160

Query: 235 KATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGA 294
           K  TKLK RL  ESQVR LT+KEQLVLRLEKQYP D+GVI+AFFFNYVKLNPG+ALYLGA
Sbjct: 161 KIITKLKIRLQMESQVRQLTDKEQLVLRLEKQYPGDVGVISAFFFNYVKLNPGEALYLGA 220

Query: 295 NEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYIT 354
           NEPHAY+ GECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEIL+G PL+PY  
Sbjct: 221 NEPHAYLYGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILQGVPLNPYTR 280

Query: 355 RYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAP 414
           RYLPPFDEFEVDCC LPKG S++FPAV GPSIF+VT GEG+    +  + V EGDVLFAP
Sbjct: 281 RYLPPFDEFEVDCCSLPKGASAMFPAVEGPSIFVVTVGEGTAHVGACEEQVGEGDVLFAP 340

Query: 415 ANTEINITTSSKLQLYRAGVNSRFL 439
           A+TEI+  TS++L LYRAGVNSR  
Sbjct: 341 ADTEISFGTSTQLNLYRAGVNSRLF 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832896|ref|XP_002884330.1| hypothetical protein ARALYDRAFT_477494 [Arabidopsis lyrata subsp. lyrata] gi|297330170|gb|EFH60589.1| hypothetical protein ARALYDRAFT_477494 [Arabidopsis lyrata subsp. lyrata]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/424 (65%), Positives = 329/424 (77%), Gaps = 19/424 (4%)

Query: 16  CSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVA 75
           CSV+ YDWG+ GSDSLV ++Y  NS  + D  +PYAE WMGTHESGPS+L    G+ GV 
Sbjct: 25  CSVKDYDWGKIGSDSLVYRVYAANSDDQIDPTRPYAELWMGTHESGPSYLEDADGSNGV- 83

Query: 76  GAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAH 135
                            +L+SWI +NP  LGD+VL +WGCDLPFLFKVLSVA+ LSIQAH
Sbjct: 84  -----------------TLRSWITENPKSLGDRVLEKWGCDLPFLFKVLSVARPLSIQAH 126

Query: 136 PDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVG 195
           PDK+LAK +HK  PN+YKDDNHKPEMALA T+FEALC FI LQELKSV+Q +PEI ELVG
Sbjct: 127 PDKKLAKKMHKAHPNLYKDDNHKPEMALAYTQFEALCGFIPLQELKSVIQAIPEIEELVG 186

Query: 196 SEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTE 255
           SEEAN+V  +   D EEK K V+++IFT LM+A  + T K  +KLK RLH +SQ R LT+
Sbjct: 187 SEEANQVFCISEHD-EEKVKSVVRTIFTLLMSADPDTTKKIVSKLKRRLHMDSQERQLTD 245

Query: 256 KEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNV 315
           KE+LVL+LEKQYP DIGVI+AFFFNYVKLNPG+ALYLGANEPHAY+ GEC+E MATSDNV
Sbjct: 246 KERLVLKLEKQYPNDIGVISAFFFNYVKLNPGEALYLGANEPHAYLFGECLEVMATSDNV 305

Query: 316 VRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTS 375
           VRAGLT K  D+QTLCSML+YK G+PEILKG  + PYITRYLPPF+EFEVD C LP   S
Sbjct: 306 VRAGLTSKPLDIQTLCSMLSYKLGYPEILKGSRIRPYITRYLPPFEEFEVDLCDLPSAAS 365

Query: 376 SVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVN 435
           +VFP+V GPS+ LV  GEG M T +  D ++ GDVLF PA+TEI++ +SS L+LYRAG+N
Sbjct: 366 TVFPSVPGPSLLLVLQGEGRMSTEASADGISMGDVLFVPADTEIHLRSSSDLKLYRAGIN 425

Query: 436 SRFL 439
           SRFL
Sbjct: 426 SRFL 429

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232927|ref|NP_186906.1| mannose-6-phosphate isomerase [Arabidopsis thaliana] gi|75336067|sp|Q9M884.1|MPI1_ARATH RecName: Full=Mannose-6-phosphate isomerase 1; AltName: Full=Phosphohexomutase 1; AltName: Full=Phosphomannose isomerase 1; Short=PMI1; AltName: Full=Protein MATERNAL EFFECT EMBRYO ARREST 31 gi|6957720|gb|AAF32464.1| putative mannose-6-phosphate isomerase [Arabidopsis thaliana] gi|17979416|gb|AAL49850.1| putative mannose-6-phosphate isomerase [Arabidopsis thaliana] gi|20465985|gb|AAM20214.1| putative mannose-6-phosphate isomerase [Arabidopsis thaliana] gi|332640310|gb|AEE73831.1| mannose-6-phosphate isomerase [Arabidopsis thaliana]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/424 (65%), Positives = 329/424 (77%), Gaps = 19/424 (4%)

Query: 16  CSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVA 75
           CSV+ YDWG+ GSDSLV ++Y  NS    D  +PYAE WMGTHESGPS+L    G+ GV 
Sbjct: 25  CSVKDYDWGKIGSDSLVYRVYAANSDYEIDPTRPYAELWMGTHESGPSYLEDADGSNGV- 83

Query: 76  GAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAH 135
                            +L+SWI +NP  LG++VL +WGCDLPFLFKVLSVA+ LSIQAH
Sbjct: 84  -----------------TLRSWITENPKSLGNRVLEKWGCDLPFLFKVLSVARPLSIQAH 126

Query: 136 PDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVG 195
           PDK+LAK +HK  PN+YKDDNHKPEMALA T+FEALC FI LQELKSV++ +PEI ELVG
Sbjct: 127 PDKKLAKKMHKAHPNLYKDDNHKPEMALAYTQFEALCGFIPLQELKSVIRAIPEIEELVG 186

Query: 196 SEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTE 255
           SEEAN+V  +   D EEK K V+++IFT LM+A  + T K  +KLK RLH ESQ R LT+
Sbjct: 187 SEEANQVFCITEHD-EEKVKSVVRTIFTLLMSADADTTKKIVSKLKRRLHMESQERQLTD 245

Query: 256 KEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNV 315
           KE+LVL+LEKQYP DIGVI+AFFFNYVKLNPG+ALYLGANEPHAY+ GEC+E MATSDNV
Sbjct: 246 KERLVLKLEKQYPNDIGVISAFFFNYVKLNPGEALYLGANEPHAYLFGECLEVMATSDNV 305

Query: 316 VRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTS 375
           VRAGLT K  D+QTLCSML+YK G+PEILKG  + PYITRYLPPF+EFEVD C LP G S
Sbjct: 306 VRAGLTSKPLDIQTLCSMLSYKLGYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGAS 365

Query: 376 SVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVN 435
           +VFP+V GPS+ LV  GEG M T +  D ++ GDVLF PA+TEI++ +SS L+LYRAG+N
Sbjct: 366 TVFPSVPGPSLLLVLQGEGRMSTEASADGISMGDVLFVPADTEIHLRSSSDLKLYRAGIN 425

Query: 436 SRFL 439
           SRFL
Sbjct: 426 SRFL 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2076864	432	MEE31 "MATERNAL EFFECT EMBRYO	0.785	0.803	0.695	3.6e-148
TAIR|locus:2019748	441	DIN9 "DARK INDUCIBLE 9" [Arabi	0.938	0.941	0.615	8.9e-141
ZFIN|ZDB-GENE-050904-6	450	mpi "mannose phosphate isomera	0.760	0.746	0.424	9.6e-76
POMBASE|SPBC2G2.16	412	SPBC2G2.16 "mannose-6-phosphat	0.744	0.798	0.404	2.9e-74
ASPGD|ASPL0000061020	461	manA [Emericella nidulans (tax	0.477	0.457	0.375	2.9e-73
DICTYBASE|DDB_G0284685	452	mpi "mannose-6-phosphate isome	0.918	0.898	0.417	7.5e-73
UNIPROTKB|P34949	423	MPI "Mannose-6-phosphate isome	0.766	0.801	0.401	2.3e-72
UNIPROTKB|F1SJ30	423	MPI "Uncharacterized protein"	0.762	0.796	0.405	3.7e-72
UNIPROTKB|Q3SZI0	423	MPI "Mannose-6-phosphate isome	0.764	0.799	0.414	4.7e-72
UNIPROTKB|F1P6B2	567	MPI "Mannose-6-phosphate isome	0.762	0.594	0.413	8.6e-71

TAIR|locus:2076864 MEE31 "MATERNAL EFFECT EMBRYO ARREST 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 1264 (450.0 bits), Expect = 3.6e-148, Sum P(2) = 3.6e-148
 Identities = 242/348 (69%), Positives = 288/348 (82%)

Query:    92 VSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNV 151
             V+L+SWI +NP  LG++VL +WGCDLPFLFKVLSVA+ LSIQAHPDK+LAK +HK  PN+
Sbjct:    83 VTLRSWITENPKSLGNRVLEKWGCDLPFLFKVLSVARPLSIQAHPDKKLAKKMHKAHPNL 142

Query:   152 YKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGE 211
             YKDDNHKPEMALA T+FEALC FI LQELKSV++ +PEI ELVGSEEAN+V  +   D E
Sbjct:   143 YKDDNHKPEMALAYTQFEALCGFIPLQELKSVIRAIPEIEELVGSEEANQVFCITEHD-E 201

Query:   212 EKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADI 271
             EK K V+++IFT LM+A  + T K  +KLK RLH ESQ R LT+KE+LVL+LEKQYP DI
Sbjct:   202 EKVKSVVRTIFTLLMSADADTTKKIVSKLKRRLHMESQERQLTDKERLVLKLEKQYPNDI 261

Query:   272 GVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLC 331
             GVI+AFFFNYVKLNPG+ALYLGANEPHAY+ GEC+E MATSDNVVRAGLT K  D+QTLC
Sbjct:   262 GVISAFFFNYVKLNPGEALYLGANEPHAYLFGECLEVMATSDNVVRAGLTSKPLDIQTLC 321

Query:   332 SMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTD 391
             SML+YK G+PEILKG  + PYITRYLPPF+EFEVD C LP G S+VFP+V GPS+ LV  
Sbjct:   322 SMLSYKLGYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGASTVFPSVPGPSLLLVLQ 381

Query:   392 GEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSRFL 439
             GEG M T +  D ++ GDVLF PA+TEI++ +SS L+LYRAG+NSRFL
Sbjct:   382 GEGRMSTEASADGISMGDVLFVPADTEIHLRSSSDLKLYRAGINSRFL 429

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0032025 "response to cobalt ion" evidence=IEP

GO:0033591 "response to L-ascorbic acid" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2019748 DIN9 "DARK INDUCIBLE 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 264/429 (61%), Positives = 332/429 (77%)

Query:    13 RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXX 72
             RL C V+ Y+WG+ G +SLV++L   N+G+R D + PYAEFWMGTHESGPS +       
Sbjct:    24 RLRCFVKNYEWGKLGPESLVARLQEANTGQRVDSEIPYAEFWMGTHESGPSHVEFGSGHG 83

Query:    73 XXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSI 132
                            C  +V+LKSW+L NPN+LG KV+ +WGCDLPFLFKVLSV KALSI
Sbjct:    84 VSDK-----------C--MVTLKSWVLDNPNLLGSKVVDKWGCDLPFLFKVLSVTKALSI 130

Query:   133 QAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVE 192
             QAHP+K LA+ LH+  P +Y+D+NHKPE+ALA+T F+ALC F++L+ELK V+ NVPEI E
Sbjct:   131 QAHPNKALAEKLHREDPLLYRDNNHKPEIALAVTPFQALCGFVTLKELKEVITNVPEITE 190

Query:   193 LVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRP 252
             LVGS+ A+++ +V   D +E+ K V++ IFT LM+AS   T +  +++K+RL  E++ R 
Sbjct:   191 LVGSKAADQIFNVHEHDEDERIKSVVRLIFTQLMSASNNETKQVVSRMKNRLLLETKHRE 250

Query:   253 LTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATS 312
             L+EKE+LVL LEKQY  DIGVI+AFFFNYVKLNPG+ALYL ANEPHAYISG+C+ECMA S
Sbjct:   251 LSEKEKLVLELEKQYTGDIGVISAFFFNYVKLNPGEALYLDANEPHAYISGDCVECMAAS 310

Query:   313 DNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPK 372
             DNVVRAGLTPKHRDVQTLCSMLTYK G+PEILKGFPL+PY+TRYLPPFDEFEVD C LP+
Sbjct:   311 DNVVRAGLTPKHRDVQTLCSMLTYKLGYPEILKGFPLTPYVTRYLPPFDEFEVDHCDLPR 370

Query:   373 GTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSK-LQLYR 431
             G S+VFPAV GPS++LV +G+G + T S    V  GDVLF PA+ EI++T  S  ++LYR
Sbjct:   371 GKSTVFPAVPGPSVYLVIEGKGQLRTGSSKVLVNRGDVLFVPADIEIHVTGESDVMKLYR 430

Query:   432 AGVNSRFLQ 440
             AGV+SRF Q
Sbjct:   431 AGVSSRFFQ 439

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009646 "response to absence of light" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP

GO:0033591 "response to L-ascorbic acid" evidence=IEP

GO:0046680 "response to DDT" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

ZFIN|ZDB-GENE-050904-6 mpi "mannose phosphate isomerase" [Danio rerio (taxid:7955)]

 Score = 664 (238.8 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
 Identities = 150/353 (42%), Positives = 201/353 (56%)

Query:    93 SLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVY 152
             +L  WI   P  LG KV   +   LPFLFKVLSV  ALSIQAHP++ELA  LH   P  Y
Sbjct:    98 TLGQWIADFPGCLGSKVKDTFHGQLPFLFKVLSVNTALSIQAHPNRELAARLHAQFPEHY 157

Query:   153 KDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGE- 211
              D+NHKPEMA+A+T+FE LC F  ++E+   L+NVPE   LVG+E +  +   +  DG  
Sbjct:   158 PDNNHKPEMAIALTQFEGLCGFRPMEEILGFLKNVPEFRALVGNEASEEL---QSADGNP 214

Query:   212 EKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKE--QLVLRLEKQYPA 269
              +    L+  FT +M    ++       L  R+ +E      T     +L+LRL  QYP 
Sbjct:   215 HRTSLALKKCFTRMMNCEKKLFVDQLNMLVKRISEEEAAGKDTSGSNGELLLRLHSQYPG 274

Query:   270 DIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQT 329
             DIG  + +F N + L PG+A++LGANEPHAY+SG+C+ECMA SDN VRAGLTPK+ DV T
Sbjct:   275 DIGCFSIYFLNRIVLQPGEAMFLGANEPHAYLSGDCVECMACSDNTVRAGLTPKYIDVDT 334

Query:   330 LCSMLTYKQGFPEILKGFPL-----SPYITRYLPPFDEFEVDCCILPKGTSS-VFPAVSG 383
             LC ML Y    P   K FP       P +  Y PP  +F V    +P  T      A+  
Sbjct:   335 LCEMLNYCPA-PVSAKIFPCVRDNADPCVYLYDPPVPDFTVMRIQVPSSTQQYTVSALDS 393

Query:   384 PSIFLVTDGEGSMLTASH-ND-AVAEGDVLFAPANTEINI--TTSSKLQLYRA 432
               I LV DGE    +A+  +D  +  G VLF  AN  +++  T+S+ + ++RA
Sbjct:   394 AGILLVIDGEAVATSAAALSDITLKRGSVLFISANESVSLQLTSSTGMTMFRA 446

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA;IDA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0001889 "liver development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0090171 "chondrocyte morphogenesis" evidence=IGI

GO:0016853 "isomerase activity" evidence=IEA

POMBASE|SPBC2G2.16 SPBC2G2.16 "mannose-6-phosphate isomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 615 (221.5 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
 Identities = 141/349 (40%), Positives = 202/349 (57%)

Query:    99 LKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHK 158
             L  P  +G+KV  ++G  LPFLFKVLS+ K LSIQAHPDK L K LHK  P  YKDDNHK
Sbjct:    65 LLTPETVGEKVYKKYGKQLPFLFKVLSINKVLSIQAHPDKPLGKQLHKTNPKEYKDDNHK 124

Query:   159 PEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVL 218
             PEMA+A+TEF+ALC F  +++++  L ++  + E VG EEA R     ++  E KA   L
Sbjct:   125 PEMAVALTEFDALCGFRPVKQIEQFLDSIAPLREFVG-EEAVRQFKGTVKQDERKA---L 180

Query:   219 QSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEK-----EQLVLRLEKQYPADIGV 273
             +++F  LM    +   + T +L      ++     TE        L++ L  Q+P DIG+
Sbjct:   181 ETLFNELMHKDEKRIQEFTPQLVQLAKSDANNFGGTEYGGKAFSDLIIHLNSQFPDDIGL 240

Query:   274 IAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSM 333
                 F NYV+L+PG+A++L A +PHAY+SG  IECMA SDNV+R G TPK +D++TL + 
Sbjct:   241 FVTPFLNYVRLHPGEAVFLRALDPHAYVSGNIIECMAASDNVIRLGFTPKFKDIETLVNN 300

Query:   334 LTYK--QGFPEILKGFPL-----SPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSI 386
             LTY+      ++ +  P      S     Y PP +EF +    +  G       ++GPSI
Sbjct:   301 LTYQTADAKSQLTQPVPFAKACGSGKTLLYDPPIEEFSILQTKVSPGQKQCIRGINGPSI 360

Query:   387 FLVTDGEGSMLTASHND--AVAEGDVLFAPANTEINIT-TSSKLQLYRA 432
              LVT+G G +L     D  +++ G V F  AN  + I+ TS  + +Y+A
Sbjct:   361 LLVTEGSG-ILNGDKGDVASISPGFVYFISANFPLTISATSEPVVVYQA 408

GO:0000032 "cell wall mannoprotein biosynthetic process" evidence=ISO

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006486 "protein glycosylation" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=ISO

ASPGD|ASPL0000061020 manA [Emericella nidulans (taxid:162425)]

 Score = 345 (126.5 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
 Identities = 90/240 (37%), Positives = 127/240 (52%)

Query:   208 QDGEE--KAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQV------RPLT----- 254
             +D E+  K K  L+++FT+LM ++ E   +A  +L +      +        P T     
Sbjct:   187 EDPEQTKKNKVALRTLFTSLMQSASENIEQAARELVAAAQSSPETFASLVNAPDTNPTNA 246

Query:   255 -EKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSD 313
              E   +++RL +Q+P DIG+   FF N+V+L PG+A++L A++ HAYISG+ IECMA+SD
Sbjct:   247 AELASIIIRLNEQFPNDIGLFVFFFLNFVRLEPGEAMFLKADDIHAYISGDIIECMASSD 306

Query:   314 NVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLS-PYITR-------------YLPP 359
             NVVRAG TPK +DV TL  MLTY     +  K  P   PY                Y PP
Sbjct:   307 NVVRAGFTPKFKDVDTLTEMLTYSYAPIDEQKLQPTDYPYTVLNAAAYSSASDSLLYDPP 366

Query:   360 FDEFEVDCCILPK-GTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE 418
              +EF V    L + G  + F  ++GPSI + T G G +      + V EG V F  AN E
Sbjct:   367 IEEFSVVKTSLRRTGAKATFDPLTGPSILICTGGTGKISVGHKTEEVKEGYVFFVGANAE 426

GO:0006013 "mannose metabolic process" evidence=IEA;RCA

GO:0030448 "hyphal growth" evidence=IMP

GO:0006486 "protein glycosylation" evidence=ISS

GO:0000032 "cell wall mannoprotein biosynthetic process" evidence=ISS

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=ISS;RCA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA

DICTYBASE|DDB_G0284685 mpi "mannose-6-phosphate isomerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 186/446 (41%), Positives = 257/446 (57%)

Query:    11 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDK---PYAEFWMGTHESGPSFLXX 67
             ++ L C  Q Y+WG+ GS+S V+KL    + + +DI K   PYAE WMG H S PS +  
Sbjct:    21 IVLLKCVSQNYEWGKYGSNSTVAKLLKGYAKECSDIIKETIPYAELWMGDHVSAPSKVEY 80

Query:    68 XXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVA 127
                                   E  S  S    + ++ G+ V  R+G D PFLFKVLS+ 
Sbjct:    81 KNKELKLREYIDTVQKEI---NEKSSTSS--SSSSSIRGEIVEKRFGNDFPFLFKVLSIR 135

Query:   128 KALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNV 187
              ALSIQAHPD +LA+ L K  PN+YKD  HKPE+A+A T FEALCSF  L E++S +  +
Sbjct:   136 TALSIQAHPDSQLAQVLFKKYPNIYKDPYHKPEIAIATTPFEALCSFRPLSEIQSFIDTI 195

Query:   188 PEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKE 247
             PE    +     N +  +++ D +E     L+SI T+L+ A   + +    +L +RL+ E
Sbjct:   196 PEFKNSL----PNNL--IKLDDCKE----YLKSIVTSLLKADGLLISNNLKELNNRLN-E 244

Query:   248 SQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIE 307
              +     + ++LVL+L  QYP D+GV  A+  NY+ L PG+AL+LGA EPHAYISG+C+E
Sbjct:   245 KREEERDDLDRLVLKLYSQYPGDVGVFFAYILNYIVLKPGEALFLGAGEPHAYISGDCVE 304

Query:   308 CMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEIL--KGFP-LSPYITR-YLPPFDEF 363
             CMA SDNVVRAGLTPK +DV TL  MLTY+ G P+++  +  P LS    R Y PP DEF
Sbjct:   305 CMAPSDNVVRAGLTPKLKDVDTLGDMLTYRTGRPDLVVPQQRPDLSLTNYRCYQPPVDEF 364

Query:   364 EV------DCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAE---GDVLFAP 414
             +V      DCC   K  + V+ +  GPSI LV  G  S+   S+   +     G +LF P
Sbjct:   365 QVEYYHLDDCC---KNIN-VYSS-KGPSIVLVYSGNLSIENKSNQSTLNNLHTGSILFVP 419

Query:   415 ANTE---INITTSSKLQLYRAGVNSR 437
             ANT+   I   +S  + +Y A V++R
Sbjct:   420 ANTDYQFIQSDSSIPVSIYVASVSNR 445

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA;ISS

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P34949 MPI "Mannose-6-phosphate isomerase" [Homo sapiens (taxid:9606)]

 Score = 612 (220.5 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
 Identities = 141/351 (40%), Positives = 196/351 (55%)

Query:    93 SLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVY 152
             +L  WI +N + LG KV   +  +LPFLFKVLSV   LSIQAHP+KELA+ LH   P  Y
Sbjct:    70 TLSQWIAENQDSLGSKVKDTFNGNLPFLFKVLSVETPLSIQAHPNKELAEKLHLQAPQHY 129

Query:   153 KDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEE 212
              D NHKPEMA+A+T F+ LC F  ++E+ + L+ VPE   L+G E A  +      D + 
Sbjct:   130 PDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQFLIGDEAATHLKQTMSHDSQA 189

Query:   213 KAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEK--EQLVLRLEKQYPAD 270
              A   LQS F++LM +  ++  +    L  R+ +++      E    +L+L+L +QYP D
Sbjct:   190 VASS-LQSCFSHLMKSEKKVVVEQLNLLVKRISQQAAAGNNMEDIFGELLLQLHQQYPGD 248

Query:   271 IGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTL 330
             IG  A +F N + L PG+A++L AN PHAY+ G+C+ECMA SDN VRAGLTPK  DV TL
Sbjct:   249 IGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVPTL 308

Query:   331 CSMLTYKQGFPEILKGFPL----SPYITRYLPPFDEFEVDCCILPKG-TSSVFPAVSGPS 385
             C ML+Y     +     P      PY++ Y PP  +F +    +P   T     A+   S
Sbjct:   309 CEMLSYTPSSSKDRLFLPTRSQEDPYLSIYDPPVPDFTIMKTEVPGSVTEYKVLALDSAS 368

Query:   386 IFLVTDGE--GSMLTASHNDAVAEGDVLFAPANTEINI--TTSSKLQLYRA 432
             I L+  G    S  T      +  G VLF  AN  +++  T    L ++RA
Sbjct:   369 ILLMVQGTVIASTPTTQTPIPLQRGGVLFIGANESVSLKLTEPKDLLIFRA 419

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SJ30 MPI "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 606 (218.4 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 143/353 (40%), Positives = 198/353 (56%)

Query:    93 SLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVY 152
             +L  WI +N   LG KV   +   LPFLFKVLSV  ALSIQAHP+KELA+ LH   P  Y
Sbjct:    70 TLGQWIAENQECLGSKVKDTFSGKLPFLFKVLSVETALSIQAHPNKELAEKLHLQAPQHY 129

Query:   153 KDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEE 212
              D NHKPE+A+A+T F+ LC F  ++E+ + L  VPE   L+G   A ++      D + 
Sbjct:   130 PDANHKPEIAIALTSFQGLCGFRPVEEIVTFLTKVPEFQFLIGDSAATQLKQSISHDSQA 189

Query:   213 KAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEK--EQLVLRLEKQYPAD 270
              A   L+S F++LM +  ++  +    L  R+ ++       E    +L+L+L +QYP D
Sbjct:   190 VAS-ALRSCFSHLMNSEKKVVVEQLNLLVKRISQQVAAGNNMEDICGELLLQLHQQYPGD 248

Query:   271 IGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTL 330
             IG  A +F N + L PG+A++L AN PHAY+ G+C+ECMA SDN VRAGLTPK  DV TL
Sbjct:   249 IGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVSTL 308

Query:   331 CSMLTYKQGFPEILKGFPLS-----PYITRYLPPFDEFEVDCCILPKGTSSVFP--AVSG 383
             C ML+Y    P   + FP +     PY+  Y PP  +F V    +P G+   +   A+  
Sbjct:   309 CEMLSYTPS-PSQDRLFPPTQSQEDPYLVIYDPPVPDFTVMKMEVP-GSVPEYKVLALDS 366

Query:   384 PSIFLVTDGE--GSMLTASHNDAVAEGDVLFAPANTEINI--TTSSKLQLYRA 432
              SI L+  G    S  TA     +  G VLF  AN  +++  T    L ++RA
Sbjct:   367 ASILLMVQGTVTASTPTAQATIPLQRGGVLFIGANESVSLKLTMPEDLLMFRA 419

GO:0005737 "cytoplasm" evidence=IEA

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|Q3SZI0 MPI "Mannose-6-phosphate isomerase" [Bos taurus (taxid:9913)]

 Score = 612 (220.5 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 146/352 (41%), Positives = 197/352 (55%)

Query:    93 SLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVY 152
             +L  WI  N + LG KV   +   LPFLFKVLSV  ALSIQAHP+KELA+ LH   P  Y
Sbjct:    70 TLGQWIADNQDSLGSKVKDTFNGKLPFLFKVLSVETALSIQAHPNKELAEKLHLQAPQHY 129

Query:   153 KDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEE 212
              D NHKPEMA+A+T F+ LC F  ++E+ + L  VPE   L+G   A ++     QD E 
Sbjct:   130 PDANHKPEMAIALTPFQGLCGFRPVEEIVTFLTKVPEFQFLIGDNAAAQLKQSLSQDSEA 189

Query:   213 KAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEK--EQLVLRLEKQYPAD 270
                  L+S F++LM +  ++  +    L  R+ ++       E    +L+L+L +QYP D
Sbjct:   190 VTS-ALRSCFSHLMKSEKKVVVEQLNLLVKRISQQVAAGNNMEDICGELLLQLHQQYPGD 248

Query:   271 IGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTL 330
             IG  A +F N + L PG+A++L AN PHAY+ G+C+ECMA SDN VRAGLTPK  DV TL
Sbjct:   249 IGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVPTL 308

Query:   331 CSMLTYKQGFPEILKGFPLS-----PYITRYLPPFDEFEVDCCILPKG-TSSVFPAVSGP 384
             C ML+Y    P   + FP +     PY++ Y PP  +F V    +P   T     A+   
Sbjct:   309 CEMLSYTPS-PSQDRLFPPARSPEDPYLSIYDPPVPDFTVMKVEVPGSVTEYKVLALDSA 367

Query:   385 SIFLVTDGE--GSMLTASHNDAVAEGDVLFAPANTEINI--TTSSKLQLYRA 432
             SI LV  G    S  TA     +  G VLF  AN  +++  T    L ++RA
Sbjct:   368 SILLVVQGTVTASSPTAQAAIPLKRGGVLFIGANESVSLKLTVPKDLLMFRA 419

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|F1P6B2 MPI "Mannose-6-phosphate isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 609 (219.4 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
 Identities = 145/351 (41%), Positives = 195/351 (55%)

Query:    93 SLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVY 152
             +L  WI +N + LG KV   +   LPFLFKVLSV  ALSIQAHP+KELA+ LH   P  Y
Sbjct:   216 TLGQWIAENQDCLGSKVKDMFHGKLPFLFKVLSVETALSIQAHPNKELAEKLHLQAPQHY 275

Query:   153 KDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEE 212
              D NHKPEMA+A+T F+ LC F  ++E+ + L  VPE   L+G + A ++      D   
Sbjct:   276 PDANHKPEMAVALTSFQGLCGFRPVEEILTFLTKVPEFQFLIGDKAATQLKQSMGGDSRS 335

Query:   213 KAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEK--EQLVLRLEKQYPAD 270
              A   LQS F++LM +  ++  +    L  R+ ++       E    +L+L+L +QYP D
Sbjct:   336 MAS-ALQSCFSHLMKSEKKVVVEQLNLLVKRISQQVAAGNNMEDIYGELLLQLHQQYPGD 394

Query:   271 IGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTL 330
             IG  A +F N + L PG+A++L AN PHAY+ G+C+ECMA SDN VRAGLTPK  DV TL
Sbjct:   395 IGCFAIYFLNLLTLKPGEAMFLEANVPHAYLKGDCVECMACSDNTVRAGLTPKFIDVPTL 454

Query:   331 CSMLTYKQGFPEILKGFPL----SPYITRYLPPFDEFEVDCCILPKGTSSV-FPAVSGPS 385
             C ML+Y      +    P      PY+  Y PP  +F V    +P   +     AV   S
Sbjct:   455 CEMLSYTPSKDRLF--LPARSQEDPYLYIYDPPVPDFTVMKMQVPGSVAEYNVLAVDSAS 512

Query:   386 IFLVTDGE--GSMLTASHNDAVAEGDVLFAPANTEINITTS--SKLQLYRA 432
             I LV  G    S  TA     +  G VLF  AN  +++  +  S L L+RA
Sbjct:   513 ILLVVQGRVTASTPTAQTPIPLQRGGVLFIGANERVSLKLAVPSDLLLFRA 563

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA

GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54PA0	MPI_DICDI	5, ., 3, ., 1, ., 8	0.4044	0.9230	0.9026	yes	no
Q75AB5	MPI_ASHGO	5, ., 3, ., 1, ., 8	0.3870	0.9072	0.9347	yes	no
Q76IQ2	MPI_CANGA	5, ., 3, ., 1, ., 8	0.3897	0.9117	0.9393	yes	no
Q9M884	MPI1_ARATH	5, ., 3, ., 1, ., 8	0.6509	0.9162	0.9375	yes	no
P34650	MPI_CAEEL	5, ., 3, ., 1, ., 8	0.3577	0.8642	0.9182	yes	no
O43014	MPI_SCHPO	5, ., 3, ., 1, ., 8	0.3867	0.8891	0.9538	yes	no
P34949	MPI_HUMAN	5, ., 3, ., 1, ., 8	0.3940	0.9162	0.9574	yes	no
Q9HFU4	MPI_CRYNJ	5, ., 3, ., 1, ., 8	0.3903	0.9049	0.9216	yes	no
Q3SZI0	MPI_BOVIN	5, ., 3, ., 1, ., 8	0.3954	0.9140	0.9550	yes	no
Q66WM4	MPI_ASPFU	5, ., 3, ., 1, ., 8	0.3982	0.8914	0.8621	yes	no
P29951	MPI_EMENI	5, ., 3, ., 1, ., 8	0.3914	0.8800	0.8438	yes	no
P29952	MPI_YEAST	5, ., 3, ., 1, ., 8	0.3794	0.9140	0.9417	yes	no
Q68FX1	MPI_RAT	5, ., 3, ., 1, ., 8	0.3900	0.9117	0.9527	yes	no
Q924M7	MPI_MOUSE	5, ., 3, ., 1, ., 8	0.3823	0.9095	0.9503	yes	no
Q83KZ1	MANA_SHIFL	5, ., 3, ., 1, ., 8	0.3178	0.8416	0.9514	yes	no
A5A6K3	MPI_PANTR	5, ., 3, ., 1, ., 8	0.3940	0.9162	0.9574	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.1.8	0.824
3rd Layer	5.3.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
PLN02288	394	PLN02288, PLN02288, mannose-6-phosphate isomerase	0.0
pfam01238	373	pfam01238, PMI_typeI, Phosphomannose isomerase typ	1e-112
PRK15131	389	PRK15131, PRK15131, mannose-6-phosphate isomerase;	2e-56
COG1482	312	COG1482, ManA, Phosphomannose isomerase [Carbohydr	4e-29
COG1482	312	COG1482, ManA, Phosphomannose isomerase [Carbohydr	4e-26
TIGR00218	303	TIGR00218, manA, mannose-6-phosphate isomerase, cl	4e-22
TIGR00218	303	TIGR00218, manA, mannose-6-phosphate isomerase, cl	1e-11

>gnl|CDD|215162 PLN02288, PLN02288, mannose-6-phosphate isomerase

 Score =  711 bits (1836), Expect = 0.0
 Identities = 276/413 (66%), Positives = 318/413 (76%), Gaps = 21/413 (5%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGG 70
           +LRL C+VQ YDWGR GS+S V++L   NSG   D DKPYAE WMGTH SGPSF+   G 
Sbjct: 1   MLRLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATGK 60

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKAL 130
                                V LK WI +NP  LGD+V+ RWG DLPFLFKVLSVAKAL
Sbjct: 61  GS-------------------VLLKEWIAENPAALGDRVVERWGGDLPFLFKVLSVAKAL 101

Query: 131 SIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEI 190
           SIQAHPDK+LA+ LH   PNVYKDDNHKPEMALA+TEFEALC F+++QELK+VL+ VPE+
Sbjct: 102 SIQAHPDKKLAEKLHAEQPNVYKDDNHKPEMALALTEFEALCGFVTIQELKAVLRTVPEL 161

Query: 191 VELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQV 250
            ELVGSE A+++L +   DGEE  K VL+S FT LMTAS ++ T+A +KLK+RLH ESQ 
Sbjct: 162 RELVGSEAADQLLALPEHDGEEDVKSVLRSAFTALMTASKDVVTEAVSKLKARLHAESQA 221

Query: 251 RPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMA 310
           R LT+KE+LVLRLEKQYP D+GV++AFF NYVKLNPG+ALYLGANEPHAY+SGECIECMA
Sbjct: 222 RELTDKEELVLRLEKQYPGDVGVLSAFFLNYVKLNPGEALYLGANEPHAYLSGECIECMA 281

Query: 311 TSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCIL 370
           TSDNVVRAGLTPK RDVQTLCSMLTYKQGFPEIL G P+ PY TRYLPPFDEFEVD C +
Sbjct: 282 TSDNVVRAGLTPKFRDVQTLCSMLTYKQGFPEILTGVPVDPYTTRYLPPFDEFEVDHCDV 341

Query: 371 PKGTSSVFPAVSGPSIFLVTDGEGSMLTASHND--AVAEGDVLFAPANTEINI 421
           P G S VFPAV GPS+FLV +GEG + T S  D  A   GDV F PA TEI++
Sbjct: 342 PPGASVVFPAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEIHV 394

Length = 394

>gnl|CDD|216382 pfam01238, PMI_typeI, Phosphomannose isomerase type I

 Score =  334 bits (859), Expect = e-112
 Identities = 173/399 (43%), Positives = 223/399 (55%), Gaps = 35/399 (8%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGG 70
           L RL C VQ Y WG+ GS+S ++KL+   S    D DKPYAE WMGTH  GPS       
Sbjct: 1   LFRLQCGVQNYAWGKIGSNSALAKLFA-YSIPSIDEDKPYAELWMGTHPKGPS------- 52

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKAL 130
                  V+NG   +      V+L     +   + G     R+G +LPFLFKVLSV K L
Sbjct: 53  ------KVLNGQLRD------VTLSELSAELGELFGK----RFGGNLPFLFKVLSVEKPL 96

Query: 131 SIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPEI 190
           SIQ HPDKEL + LH   P  Y DDNHKPE+A+A+T FE LC F  L E+   L++VPE+
Sbjct: 97  SIQVHPDKELGEILHAADPKNYPDDNHKPELAIALTPFEGLCGFRPLSEIVEFLKDVPEL 156

Query: 191 VELVGSEEA----NRVLHVEMQDGE-EKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLH 245
            E++G E A      V  +   D +      VLQ  F++LM +  E        L  R  
Sbjct: 157 AEIIGGETARSFEELVQLIASGDPDALLNIKVLQGDFSSLMNSGTEHIKIQGALLLERQQ 216

Query: 246 KESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGEC 305
                  + +  +L+ RL +QYP DIG+    F N+VKLNPG+A++L AN+PHAY+SG+ 
Sbjct: 217 SSPATYNVYDLPELIDRLNEQYPDDIGLF-RLFLNHVKLNPGEAMFLKANDPHAYLSGDI 275

Query: 306 IECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYI---TRYLPPFDE 362
           +ECMA SDNVVRAGLTPK  DV  L  MLTYK    +  K     PY+     Y PP DE
Sbjct: 276 VECMADSDNVVRAGLTPKFIDVPELVEMLTYKYDPSDEQKLQQTEPYLDGSVLYDPPIDE 335

Query: 363 FEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASH 401
           F V    L KG  ++ P  + PSI + T+G G+ + ASH
Sbjct: 336 FAVLQTKLKKGDHTILPL-TSPSILICTEGTGT-IIASH 372

This is a family of Phosphomannose isomerase type I enzymes (EC 5.3.1.8). Length = 373

>gnl|CDD|185085 PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional

 Score =  190 bits (486), Expect = 2e-56
 Identities = 119/336 (35%), Positives = 168/336 (50%), Gaps = 65/336 (19%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGG 70
           + ++  SVQ Y WG   S + +++LYG+ +      ++P AE WMG H    S       
Sbjct: 1   MQKMINSVQNYAWG---SKTALTELYGIANPD----NQPMAELWMGAHPKSSSR------ 47

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNP-NVLGDKVLHRWGCDLPFLFKVLSVAKA 129
                  V + +      G+IVSL+  I  +   +LG+ V  R+G +LPFLFKVL  A+ 
Sbjct: 48  -------VQDAN------GDIVSLRDVIESDKSALLGEAVAKRFG-ELPFLFKVLCAAQP 93

Query: 130 LSIQAHPDKELAKT-----------LHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQ 178
           LSIQ HP+K  A+            L     N YKD NHKPE+  A+T F A+ +F    
Sbjct: 94  LSIQVHPNKRAAEIGFAKENAAGIPLDAAERN-YKDPNHKPELVFALTPFLAMNAFREFS 152

Query: 179 ELKSVLQNV----PEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTT 234
           E+ S+LQ V    P I   +   +A R                L  +F +L+    E  +
Sbjct: 153 EIVSLLQPVAGAHPAIAHFLQQPDAER----------------LSELFASLLNMQGEEKS 196

Query: 235 KATTKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGA 294
           +A   LKS L   SQ     E  Q +  + + YP D G+ +    N VKLNPG+A++L A
Sbjct: 197 RALAVLKSAL--NSQ---QGEPWQTIRLISEFYPDDSGLFSPLLLNVVKLNPGEAMFLFA 251

Query: 295 NEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTL 330
             PHAY+ G  +E MA SDNV+RAGLTPK+ D+  L
Sbjct: 252 ETPHAYLQGVALEVMANSDNVLRAGLTPKYIDIPEL 287

Length = 389

>gnl|CDD|224399 COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]

 Score =  115 bits (291), Expect = 4e-29
 Identities = 55/196 (28%), Positives = 77/196 (39%), Gaps = 44/196 (22%)

Query: 12  LRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGA 71
           L LT  +Q+Y WG T     ++ L+G +        +P  E W G H +GPS +A   G 
Sbjct: 4   LFLTPVLQEYIWGGT----ALADLFGYD-----PPSEPIGELWAGAHPNGPSTVANGPGQ 54

Query: 72  GGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALS 131
           G                    SL   I     +LG+K   R+    P LFK+L     LS
Sbjct: 55  G-------------------KSLSELIADPRELLGNKSFDRF----PLLFKILDANDPLS 91

Query: 132 IQAHPDKELAKTLHKLLPNV-----YKDDNHKPEMALAITEFEALCSFISLQELKSVLQN 186
           IQ HP  E A+   + +        YKD NHKPE+   +T           +     L+ 
Sbjct: 92  IQVHPSDEYAEEGEEGILGKTECWYYKDANHKPELIYGLTP-------AKSKPAIEELKE 144

Query: 187 VPEIVELVGSEEANRV 202
           + +   L      NRV
Sbjct: 145 MIDRGGLFDPLLLNRV 160

Length = 312

>gnl|CDD|224399 COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]

 Score =  107 bits (269), Expect = 4e-26
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 4/169 (2%)

Query: 265 KQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKH 324
           K+     G+      N VKL PG+A +L A  PHAY+ G  +E M  SDN  R   T ++
Sbjct: 143 KEMIDRGGLFDPLLLNRVKLKPGEAFFLPAGTPHAYLKGLVLEVMQNSDNTYRVYDTDRY 202

Query: 325 RDVQTLCSMLTYKQGFPEILKGFP-LSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSG 383
            D+  L  +  +K      L   P        Y  P ++F +       GT+  F     
Sbjct: 203 DDIGELRELHLFKAKDVITLPTQPRKQGAELTYPVPNEDFALY-KWDISGTAE-FIKQES 260

Query: 384 PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRA 432
            SI LV +GEG+++       + +G+  F PAN     T   + +    
Sbjct: 261 FSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDG-PYTIEGEGEEAIV 308

Length = 312

>gnl|CDD|232879 TIGR00218, manA, mannose-6-phosphate isomerase, class I

 Score = 95.6 bits (238), Expect = 4e-22
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 5/141 (3%)

Query: 280 NYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQG 339
           N +KL PG   Y+ +  PHAY  G  +E M  SDNV RAG T K+ D++ L  +LT+   
Sbjct: 152 NRIKLKPGDFFYVRSGTPHAYKGGLVLEVMQNSDNVYRAGDTDKYLDIEKLVEVLTFPHV 211

Query: 340 FPEILKGFPLSPYI-TRYLPPFDEFEVDCCILPKGTSSV-FPAVSGPSIFLVTDGEGSML 397
               LKG          +  P + F V        +    F       I  V +G G + 
Sbjct: 212 PEFHLKGQKQKFGAEILFNVPTENFSV---YKWDISGKAEFKQQQSALILSVLEGSGRIK 268

Query: 398 TASHNDAVAEGDVLFAPANTE 418
           +      + +G+  F PA+  
Sbjct: 269 SGGKTLPLKKGESFFIPAHLG 289

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc [Energy metabolism, Sugars]. Length = 303

>gnl|CDD|232879 TIGR00218, manA, mannose-6-phosphate isomerase, class I

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 35/125 (28%)

Query: 19  QKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMG-THESGPSFLAKKGGAGGVAGA 77
            + DWG T     ++ L+G      +   +   E W G  H  GPS +            
Sbjct: 12  VERDWGGTA----LADLFGY-----SIPSQQTGECWAGSAHPKGPSTVLN---------- 52

Query: 78  VVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPD 137
                      G+ VSL     K+  +LG     R     PFL KVL  AK LSIQ HPD
Sbjct: 53  -----------GKGVSLIDLWEKHRELLGRADEKR----FPFLVKVLDAAKPLSIQVHPD 97

Query: 138 KELAK 142
            + A+
Sbjct: 98  DKYAE 102

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc [Energy metabolism, Sugars]. Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	100.0
PLN02288	394	mannose-6-phosphate isomerase	100.0
PRK15131	389	mannose-6-phosphate isomerase; Provisional	100.0
PF01238	373	PMI_typeI: Phosphomannose isomerase type I; InterP	100.0
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	100.0
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	100.0
PRK11171	266	hypothetical protein; Provisional	98.13
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	97.94
PRK13290	125	ectC L-ectoine synthase; Reviewed	97.8
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	97.7
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	97.62
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	97.62
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	97.2
COG1917	131	Uncharacterized conserved protein, contains double	96.87
COG4297	163	Uncharacterized protein containing double-stranded	96.72
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	96.71
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	96.56
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	96.53
smart00835	146	Cupin_1 Cupin. This family represents the conserve	96.46
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	96.36
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	96.33
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	96.21
PRK11171	266	hypothetical protein; Provisional	96.05
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	95.85
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	95.84
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	95.77
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	95.33
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	94.86
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	94.26
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	94.1
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	93.58
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	93.39
COG3718	270	IolB Uncharacterized enzyme involved in inositol m	93.37
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	93.34
PF14525	172	AraC_binding_2: AraC-binding-like domain	93.0
PF12852	186	Cupin_6: Cupin	92.91
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	92.46
PRK13501	290	transcriptional activator RhaR; Provisional	92.39
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	92.33
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	91.93
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	91.81
PRK04190	191	glucose-6-phosphate isomerase; Provisional	91.58
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	91.45
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	91.34
PRK13500	312	transcriptional activator RhaR; Provisional	90.95
COG3257	264	GlxB Uncharacterized protein, possibly involved in	90.92
PRK13502	282	transcriptional activator RhaR; Provisional	89.81
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	89.77
COG3837	161	Uncharacterized conserved protein, contains double	89.68
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	88.38
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	87.91
COG1917	131	Uncharacterized conserved protein, contains double	87.71
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	86.9
PLN00212	493	glutelin; Provisional	86.52
PRK10579	94	hypothetical protein; Provisional	86.2
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	86.15
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	86.13
PRK13290	125	ectC L-ectoine synthase; Reviewed	85.84
PRK13503	278	transcriptional activator RhaS; Provisional	85.76
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	85.74
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	85.47
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	85.12
COG3450	116	Predicted enzyme of the cupin superfamily [General	84.89
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	83.27
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	83.25
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	82.34
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	82.03
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	81.86
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	81.85
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	81.42
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	80.93

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.6e-109  Score=809.64  Aligned_cols=406  Identities=53%  Similarity=0.895  Sum_probs=372.7

Q ss_pred             cEEeeccccccccCCCCCchHHHHHh-cCCCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCC
Q 013464           11 LLRLTCSVQKYDWGRTGSDSLVSKLY-GLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCG   89 (442)
Q Consensus        11 ~~~l~p~~~~y~WG~~~~~sll~~l~-~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~   89 (442)
                      |+||+|.+|+|.||+.|++|++++|+ ..+++++|+.++||||+||||||+|||.|..++                    
T Consensus         1 l~rL~c~Vk~Y~WGk~G~~S~varlaaa~d~~~~id~~~PYAElWMGTH~~Gps~v~~~~--------------------   60 (411)
T KOG2757|consen    1 LFRLKCHVKQYAWGKKGSESLVARLAAAGDPSFQIDQDKPYAELWMGTHPSGPSHVKETG--------------------   60 (411)
T ss_pred             CceeeeeeeeccccccCcHHHHHHHHHcCCCccccCCCCchHHhhcccCCCccHhhhhcc--------------------
Confidence            68999999999999999999999999 555789999999999999999999999998754                    


Q ss_pred             ccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccchh
Q 013464           90 EIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFE  169 (442)
Q Consensus        90 ~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~f~  169 (442)
                        .+|++|+++||+++|+++.++||.+|||||||||++++|||||||||++|+++|.++|.+|||+||||||+||||+|+
T Consensus        61 --~tL~~~l~~nP~~lg~~v~~k~~~~LpFLFKVLSI~k~LSIQaHP~K~lak~LH~~dP~~YpDdNHKPEmAiAlT~Fe  138 (411)
T KOG2757|consen   61 --ETLSQWLAKNPELLGNKVADKFGCDLPFLFKVLSINKPLSIQAHPNKELAKKLHKTDPKHYPDDNHKPEMAIALTPFE  138 (411)
T ss_pred             --ccHHHHHhhChhhhcchhHhhcCCCCceeeeEeeecceeeeeecCCHHHHHHHhhhCcccCCCCCCCchheeecchHh
Confidence              499999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccC
Q 013464          170 ALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQ  249 (442)
Q Consensus       170 al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~~~~  249 (442)
                      +||||||.+||..+|++.|+++.++|.++..++....+- .++..+..|+.+|+.+|..+++.+++.+.+|+++++.+.+
T Consensus       139 ~LcGFrp~~eI~~~l~~~pe~~~LvGeEa~~q~~~~~~~-e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~  217 (411)
T KOG2757|consen  139 ALCGFRPLEEIKQFLDTIPELRELVGEEAARQLKDLTSH-EDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNELN  217 (411)
T ss_pred             hhhCccCHHHHHHHHHhChHHHHHhhHHHHHHHHhhccc-hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999887776554331 2356788999999999999999999999999999987555


Q ss_pred             CCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCCCChhH
Q 013464          250 VRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQT  329 (442)
Q Consensus       250 ~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~~dv~~  329 (442)
                      .....+..++|++|++|||+|+|+|+++|||++.|+|||++|+.|+.||||++|+|||||+|||||+|+|+|||++|+++
T Consensus       218 ~~~~~d~~eli~~l~kqfP~DIGvfs~~FlN~~~L~PGEA~yL~AnepHAYlsGdcvECMA~SDNvIRAGlTPK~~Dv~t  297 (411)
T KOG2757|consen  218 GFNLTDLEELILKLNKQFPGDIGVFSPFFLNYVRLNPGEAIYLEANEPHAYLSGDCVECMACSDNVIRAGLTPKYIDVDT  297 (411)
T ss_pred             ccCcccHHHHHHHHHhhCCCcceeeeHhhhhheecCCCceeeecCCCcceeecCceeEEecccCceeeccCCCccccHHH
Confidence            33345588999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccCCC--ccccccccCCCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC-CcEEEeC
Q 013464          330 LCSMLTYKQGF--PEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVA  406 (442)
Q Consensus       330 ll~~l~~~~~~--~~~~~~~~~~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~l~  406 (442)
                      |++||+|+...  +..+.....++++.+|.||+++|+|.+++++.++++.++..++++|++|++|+|++..+ +..+.++
T Consensus       298 L~smL~Y~~~~~~p~~~~~~~~~~~~~~Y~Ppi~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t~~~~~v~  377 (411)
T KOG2757|consen  298 LCSMLTYKLTEQQPKLFPRSRLDGYVLLYDPPIEEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDTDSKILVN  377 (411)
T ss_pred             HHhHhcccccccccccCCccCCCCceeEeCCCCcceeEEEeecCCCceEEeecCCCceEEEEEecceEEecCCCCceeec
Confidence            99999999874  33333334457799999999999999999999988888889999999999999999987 7889999


Q ss_pred             cccEEEEcCCCcEEEEec-CcEEEEEEEcCCCcc
Q 013464          407 EGDVLFAPANTEINITTS-SKLQLYRAGVNSRFL  439 (442)
Q Consensus       407 ~G~~~~Ipa~~~~~i~~~-~~~~~~~a~~~~~~~  439 (442)
                      +|+++||||+..+++.++ ..+.+|||++++||+
T Consensus       378 rG~V~fI~a~~~i~~~~~sd~~~~yrAf~~~r~~  411 (411)
T KOG2757|consen  378 RGDVLFIPANHPIHLSSSSDPFLGYRAFSNSRFL  411 (411)
T ss_pred             cCcEEEEcCCCCceeeccCcceeeeeccccccCC
Confidence            999999999999988874 449999999999864

>PLN02288 mannose-6-phosphate isomerase

Probab=100.00  E-value=3e-102  Score=793.08  Aligned_cols=391  Identities=70%  Similarity=1.151  Sum_probs=344.1

Q ss_pred             cEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCCc
Q 013464           11 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGE   90 (442)
Q Consensus        11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~~   90 (442)
                      |++|+|.+|+|.||+++.+|+|++|++...++++++++||||+|||+||++||.|.+++                   +.
T Consensus         1 m~~L~~~vq~YaWG~~~~~s~ia~l~~~~~~~~~~~~~p~aElW~g~hp~~pS~v~~~~-------------------~~   61 (394)
T PLN02288          1 MLRLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATG-------------------KG   61 (394)
T ss_pred             CeeeeCCccccCCCCCChHHHHHHHhcccCCCcCCCCCcEEEEEeeECCCCCeEEeCCC-------------------CC
Confidence            68999999999999999889999999643345677889999999999999999997654                   24


Q ss_pred             cccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccchhh
Q 013464           91 IVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEA  170 (442)
Q Consensus        91 ~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~f~a  170 (442)
                      +++|.++|++||++||....++||++||||+||||++++||||||||+++|+++|+.+|++|||+||||||+||||+|+|
T Consensus        62 ~~~L~~~i~~~~~~lG~~~~~~~~~~lP~L~KvL~a~~~LSIQvHPd~~~A~~~~~~~P~~Y~D~nHKPEm~iALt~F~a  141 (394)
T PLN02288         62 SVLLKEWIAENPAALGDRVVERWGGDLPFLFKVLSVAKALSIQAHPDKKLAEKLHAEQPNVYKDDNHKPEMALALTEFEA  141 (394)
T ss_pred             CCcHHHHHHhChhhhCchhhhhccccCceEEEEeecCCCCceeeCCCHHHHHHhcccCccccCCCCCCceeEEEcChHHH
Confidence            68999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccCC
Q 013464          171 LCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQV  250 (442)
Q Consensus       171 l~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~~~~~  250 (442)
                      ||||||.+||..+|+..|+++.++|.....++........+...++.||++|+.+|+++.+++.+++++|++++......
T Consensus       142 l~GFRp~~ei~~~l~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~f~~lm~~~~~~~~~~~~~l~~~~~~~~~~  221 (394)
T PLN02288        142 LCGFVTIQELKAVLRTVPELRELVGSEAADQLLALPEHDGEEDVKSVLRSAFTALMTASKDVVTEAVSKLKARLHAESQA  221 (394)
T ss_pred             hcCCCCHHHHHHHHHhChHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999997654444433221112236789999999999999999999999999999753221


Q ss_pred             CCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCCCChhHh
Q 013464          251 RPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTL  330 (442)
Q Consensus       251 ~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~~dv~~l  330 (442)
                      .......++++||+++||+|+|+|+++|||++.|+|||+||+|||++|||++|+|||||+|||||+|+|||||++|++++
T Consensus       222 ~~~~~~~~l~~~L~~~yP~D~G~~~~llLN~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVlRaGLTpK~~Dv~~L  301 (394)
T PLN02288        222 RELTDKEELVLRLEKQYPGDVGVLSAFFLNYVKLNPGEALYLGANEPHAYLSGECIECMATSDNVVRAGLTPKFRDVQTL  301 (394)
T ss_pred             cccchHHHHHHHHHHHCCCCCeeEhhhhhceEecCCCCEEEecCCCCceecCCCeEEeeecCCceeeecCCCccccHHHH
Confidence            12333678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccCCCccccccccCCCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcE--EEeCcc
Q 013464          331 CSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHN--DAVAEG  408 (442)
Q Consensus       331 l~~l~~~~~~~~~~~~~~~~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~--~~l~~G  408 (442)
                      ++|++|++.++..+.+.+...+...|.+|+++|.|.+++++++....+...++++|++|++|++++..+++.  ..+++|
T Consensus       302 ~~~l~f~~~~~~~~~~~~~~~~~~~y~~P~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G  381 (394)
T PLN02288        302 CSMLTYKQGFPEILTGVPVDPYTTRYLPPFDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRG  381 (394)
T ss_pred             HhhccCccCCcccccccccCCCceEECCCCcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEecCCccceEEEece
Confidence            999999988877665555445566899999999999999987765555556899999999999999876665  679999


Q ss_pred             cEEEEcCCCcEE
Q 013464          409 DVLFAPANTEIN  420 (442)
Q Consensus       409 ~~~~Ipa~~~~~  420 (442)
                      +++||||+..+.
T Consensus       382 ~~~fv~a~~~~~  393 (394)
T PLN02288        382 DVFFVPAGTEIH  393 (394)
T ss_pred             eEEEEeCCCccc
Confidence            999999987654

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=100.00  E-value=4.2e-96  Score=750.35  Aligned_cols=375  Identities=33%  Similarity=0.540  Sum_probs=326.9

Q ss_pred             cEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCCc
Q 013464           11 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCGE   90 (442)
Q Consensus        11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~~   90 (442)
                      |++|+|.+|+|+||++   |.|++++|.    +.++++||||+|||+||++||.|.+++                   ++
T Consensus         1 ~~~l~~~~q~y~WG~~---s~l~~l~g~----~~~~~~p~aE~W~gaHp~~pS~v~~~~-------------------~~   54 (389)
T PRK15131          1 MQKMINSVQNYAWGSK---TALTELYGI----ANPDNQPMAELWMGAHPKSSSRVQDAN-------------------GD   54 (389)
T ss_pred             CeeeeccccccCCCCH---HHHHHHhCC----CCCCCCceeEEEEEECCCCCeEEeCCC-------------------CC
Confidence            6899999999999986   589999853    345668999999999999999997643                   24


Q ss_pred             cccHHHHHhhCCC-cCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCC----------CCCCCCCCCc
Q 013464           91 IVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLP----------NVYKDDNHKP  159 (442)
Q Consensus        91 ~~~L~~li~~~p~-~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~----------~~Y~D~n~Kp  159 (442)
                      +++|+++|++||+ +||....++|| +|||||||||++++||||||||+++|+++|..++          |||+|+||||
T Consensus        55 ~~~L~~~i~~~~~~~LG~~~~~~f~-~lP~L~KiL~a~~~LSIQvHPd~~~A~~~f~~e~~~gip~~~~~r~Y~D~nhKp  133 (389)
T PRK15131         55 IVSLRDVIESDKSALLGEAVAKRFG-ELPFLFKVLCAAQPLSIQVHPNKRAAEIGFAKENAAGIPLDAAERNYKDPNHKP  133 (389)
T ss_pred             CCcHHHHHHhCHHHHcCcchhhhcC-CCceEeeeeccCCCceeEeCCCHHHHHHHhhhcccccCccccchhccCCCCCCc
Confidence            7899999999998 99999889997 7999999999999999999999999999986643          9999999999


Q ss_pred             eeEEEccchhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013464          160 EMALAITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTK  239 (442)
Q Consensus       160 E~w~aLt~f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~  239 (442)
                      |||||||+|+|||||||.+||..+|++.|++..++.....            ..+++.||.+|..+|+++++++++++++
T Consensus       134 Em~~aLt~F~al~GfRp~~ei~~~l~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~l~~~~~~~~~~~~~~  201 (389)
T PRK15131        134 ELVFALTPFLAMNAFREFSEIVSLLQPVAGAHPAIAHFLQ------------QPDAERLSELFASLLNMQGEEKSRALAV  201 (389)
T ss_pred             eEEEEcchhHHhcCCCcHHHHHHHHHhcchhhHHHHHHhc------------CccHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999999999999999998877765543211            1367889999999999999999999999


Q ss_pred             HHHHhhhccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcC
Q 013464          240 LKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAG  319 (442)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~g  319 (442)
                      +.+++....+  .   ...++.||+++||+|+|+|++++||+++|+|||+||||||++|||++|+++|||||||||||+|
T Consensus       202 l~~~~~~~~~--~---~~~~i~~l~~~~p~D~G~~~~llLN~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~RaG  276 (389)
T PRK15131        202 LKSALNSQQG--E---PWQTIRLISEFYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG  276 (389)
T ss_pred             HHHHHHhccc--c---hHHHHHHHHHHCCCCchheehhheeEEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEecC
Confidence            9999974312  1   3468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHhhccccccCCCccccccccCC-CcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe
Q 013464          320 LTPKHRDVQTLCSMLTYKQGFPEILKGFPLS-PYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT  398 (442)
Q Consensus       320 lt~k~~dv~~ll~~l~~~~~~~~~~~~~~~~-~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~  398 (442)
                      +|+|++|++++++|++|+..++..+...+.. +....|.+|+++|++.++++.++ ...+. .++++|++|++|+++|..
T Consensus       277 lT~K~idv~~ll~~l~f~~~~~~~~~~~~~~~~~~~~~~~p~~~F~~~~~~l~~~-~~~~~-~~~~~Illv~~G~~~i~~  354 (389)
T PRK15131        277 LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDQ-PTTLS-QQSAAILFCVEGEAVLWK  354 (389)
T ss_pred             CCCCcccHHHHHhhcCCCCCCchhccccccccCCeEEECCCCCCcEEEEEEECCc-eEEec-CCCcEEEEEEcceEEEEe
Confidence            9999999999999999998877643333322 45678999999999999999653 23333 478999999999999998


Q ss_pred             CCcEEEeCcccEEEEcCCCc-EEEEecCcEEEEEEE
Q 013464          399 ASHNDAVAEGDVLFAPANTE-INITTSSKLQLYRAG  433 (442)
Q Consensus       399 ~~~~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~  433 (442)
                      +++++.|++|+++||||+.+ +++.+  ..++++++
T Consensus       355 ~~~~~~l~~G~~~fipa~~~~~~~~g--~~~~~~~~  388 (389)
T PRK15131        355 GEQQLTLKPGESAFIAANESPVTVSG--HGRLARVY  388 (389)
T ss_pred             CCeEEEECCCCEEEEeCCCccEEEec--ccEEEEEe
Confidence            88889999999999999987 88864  56677765

>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=100.00  E-value=2.4e-85  Score=670.46  Aligned_cols=362  Identities=46%  Similarity=0.752  Sum_probs=281.3

Q ss_pred             cEEeeccccccccCCCCCchHHHHHhcC-CCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCC
Q 013464           11 LLRLTCSVQKYDWGRTGSDSLVSKLYGL-NSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCG   89 (442)
Q Consensus        11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~-~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~   89 (442)
                      |+||+|.+|+|+||+.|+++.|+++++. .++  +++++||||+|||+||++||.|.+++                   +
T Consensus         1 ~~~l~~~~~~y~WG~~Gs~~~l~~l~~~~~~~--~~~~~p~aE~W~g~hp~~ps~v~~~~-------------------l   59 (373)
T PF01238_consen    1 MFKLKPAVQNYIWGKKGSNSRLARLLGKPDPS--IDEDKPYAELWMGAHPNGPSVVANGG-------------------L   59 (373)
T ss_dssp             EEEEEEEEEE-TTBEECCCSHHHHHHHHH-TT----TTSCEEEEEES--TTS-EEEECTT-------------------H
T ss_pred             CeeeecCcccCccCCCCcccHHHHHhcCCCCc--cccCCccCCEEEEECCCCceEeecCc-------------------c
Confidence            6899999999999977778899999954 232  55679999999999999999998753                   1


Q ss_pred             ccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccchh
Q 013464           90 EIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFE  169 (442)
Q Consensus        90 ~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~f~  169 (442)
                      .+.+|.++++.+++    ....+||.+|||||||||++++||||||||+++|+++|...|++|+|+||||||+||||+|+
T Consensus        60 ~~~~~~~~~~~~~~----~~~~~~~~~lP~L~KvL~~~~~LSiQvHPd~~~A~~l~~~~p~~Y~D~NhKPEm~iALT~F~  135 (373)
T PF01238_consen   60 QGKILSDPIAELGE----KFGERFGDRLPFLFKVLDAAKPLSIQVHPDKEQAEKLHDADPRNYKDDNHKPEMAIALTPFE  135 (373)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHTTSS-SEEEEEEEESS---EEE---HHHHHHCTCCTTCCCHCSCTTTEEEEESS-EE
T ss_pred             ccchhhhhHhhhhH----HhhhccccccchhhhhhccCCCcccccCCCHHHHhhhhhcCcccccchhcCCceEEeccchh
Confidence            35567776666655    44456788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhh---hccccchh--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 013464          170 ALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHV---EMQDGEEK--AKFVLQSIFTNLMTASMEMTTKATTKLKSRL  244 (442)
Q Consensus       170 al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~---~~~~~~~~--~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~  244 (442)
                      +||||||.+||..+|+..|++..+++.....++...   ......+.  .+..|+.+|+.+|+.+.+.+...+..|.+++
T Consensus       136 al~GFRp~~eI~~~l~~~~el~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~l~~a~~~~~~~~~~~L~~~~  215 (373)
T PF01238_consen  136 ALCGFRPLEEIAEFLKDAPELAELLGGEEAESLEELLSAIEEGDPDELLERPVLKGDFSALMPAGTEHAIEALAALVERQ  215 (373)
T ss_dssp             EEEEE--HHHHHHHCCCCHHHHHHHCCCHHCCHHHHHHHHCTTSHHHHHCCCHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             hcccccchhhhhhhcccChhHHHHhhhhhhhhHHHHhhhhhccChhhhhhHHHhhhhhhhccccchHHHHHHHHHHHHhh
Confidence            999999999999999999999999988754433222   11111011  1346999999999999999999999999888


Q ss_pred             hhccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCC
Q 013464          245 HKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKH  324 (442)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~  324 (442)
                      +.........+..+++.||+++||+|+|+|+ +|||++.|+|||++|+|||++|||++|+|||||+|||||+|+|||+|+
T Consensus       216 ~~~~~~~~~~d~~~~~~~l~~~yP~D~G~~~-llLN~v~L~pGeaifl~a~~~HAYl~G~~vE~MA~SDNVlRaGLTpK~  294 (373)
T PF01238_consen  216 QNSDSTYRSYDLARLILRLNEQYPGDVGIFA-LLLNYVELQPGEAIFLPAGEPHAYLSGDCVECMANSDNVLRAGLTPKH  294 (373)
T ss_dssp             CC-HCCCHCC-HHHHHHHHHCCSTTTTCHCH-CCEEEEEE-TT-EEEEHTTHHEEEEEEEEEEEEESSEEEEECCSCSSE
T ss_pred             hcccccccccccchhhhhhhhhccccCCcEE-EEEEEEEecCCceEEecCCCccccccccceeccccccceeccCCccce
Confidence            7533211122367899999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             CChhHhhccccccCCCccccccccC---CCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC
Q 013464          325 RDVQTLCSMLTYKQGFPEILKGFPL---SPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA  399 (442)
Q Consensus       325 ~dv~~ll~~l~~~~~~~~~~~~~~~---~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~  399 (442)
                      +|++++++|++|+..++......+.   ...+..|.||+++|.+.+++++.+.... .+.++++|++|++|+++|..+
T Consensus       295 iDv~~L~~~l~y~~~~~~~~~~~~~~~~~~~~~~y~pp~~eF~l~~~~l~~g~~~~-~~~~~~~Illv~~G~~~i~~~  371 (373)
T PF01238_consen  295 IDVPELLEMLTYKPKPPEPAILPPDAPYDSGSVLYGPPVDEFALSRIDLKKGESFI-LPLDGPSILLVTEGSATIIVS  371 (373)
T ss_dssp             EEHHHHHHC-EEEEEEGGGCCE--ECCEEECEEEEEESSSSEEEEEEECCTTEEEE-E-TTS-EEEEEEEEEEEEEET
T ss_pred             eEHhHheeeeEeeccCCcceeecCccccCCceEEECCCCCeEEEEEEEECCCCeEE-CCCCCceEEEEeCCEEEEEeC
Confidence            9999999999997655433222222   2346789999999999999999776644 456899999999999999864

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.6e-69  Score=529.32  Aligned_cols=294  Identities=32%  Similarity=0.503  Sum_probs=242.8

Q ss_pred             ccEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCCC
Q 013464           10 RLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGCG   89 (442)
Q Consensus        10 ~~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~   89 (442)
                      .|++|+|.+|+|+||+.    +|++++|.    ++ .++|+||+|+++||++||.|.+++                   +
T Consensus         2 ~~~~l~~~l~~~~WGg~----~L~~lfg~----~~-~~~~~gE~W~~AHp~~~S~v~~~~-------------------~   53 (312)
T COG1482           2 EMLFLTPVLQEYIWGGT----ALADLFGY----DP-PSEPIGELWAGAHPNGPSTVANGP-------------------G   53 (312)
T ss_pred             cceecchhheeechhHH----HHHHHhCC----CC-CCCceEeEEEEecCCCCeeEEecC-------------------c
Confidence            58999999999999975    59999953    43 468999999999999999999875                   3


Q ss_pred             ccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCc-----CCCCCCCCCCCceeEEE
Q 013464           90 EIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKL-----LPNVYKDDNHKPEMALA  164 (442)
Q Consensus        90 ~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~-----~~~~Y~D~n~KpE~w~a  164 (442)
                      ++++|++++++++++||+...    .+||||+|||||+++|||||||||++|+++++.     +.|+|+|+||||||.|+
T Consensus        54 ~~~~L~el~~~~~ellG~~~~----~~FplL~KiLdA~~~LSiQVHP~d~~A~~~~~g~~gkte~w~y~D~~~k~Eli~g  129 (312)
T COG1482          54 QGKSLSELIADPRELLGNKSF----DRFPLLFKILDANDPLSIQVHPSDEYAEEGEEGILGKTECWYYKDANHKPELIYG  129 (312)
T ss_pred             CCcCHHHHHhCcHhhcCCcch----hhccceeeeeccCCcceEEECCCHHHHhhcccCccCCCcceeecCCCCCceEEEE
Confidence            689999999944459999854    468899999999999999999999999987543     35999999999999999


Q ss_pred             ccchhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 013464          165 ITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRL  244 (442)
Q Consensus       165 Lt~f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~  244 (442)
                      +|+.                ...|                         .               -+++++.++.     
T Consensus       130 ~~~~----------------~~~~-------------------------~---------------~e~l~~~i~~-----  148 (312)
T COG1482         130 LTPA----------------KSKP-------------------------A---------------IEELKEMIDR-----  148 (312)
T ss_pred             Echh----------------hcch-------------------------h---------------HHHHHHhhhh-----
Confidence            8650                0000                         0               1222221110     


Q ss_pred             hhccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCC
Q 013464          245 HKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKH  324 (442)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~  324 (442)
                                                .|+|.+.+||+++|+|||+|||||||||||++|.++|||||||||||+|+|+|+
T Consensus       149 --------------------------~~~~d~~lLn~v~lkpGe~~fl~Agt~HA~~~G~~lEvmqnSDntyR~yd~~r~  202 (312)
T COG1482         149 --------------------------GGLFDPLLLNRVKLKPGEAFFLPAGTPHAYLKGLVLEVMQNSDNTYRVYDTDRY  202 (312)
T ss_pred             --------------------------ccccchhhhcEEecCCCCEEEecCCCceeeccceEEEEEecCccEEEccccccc
Confidence                                      244446899999999999999999999999999779999999999999999999


Q ss_pred             CChhHhhccccccCCCccccccccC-CCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEE
Q 013464          325 RDVQTLCSMLTYKQGFPEILKGFPL-SPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHND  403 (442)
Q Consensus       325 ~dv~~ll~~l~~~~~~~~~~~~~~~-~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~  403 (442)
                      .|+.++.+++.|...+...+...+. ++....|.+|+++|++.++.+.+...  .....+++|++|++|++++..+++.+
T Consensus       203 ~d~~~lr~l~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~F~l~~~~i~~~~~--~~~~~~~~il~v~eG~~~l~~~~~~~  280 (312)
T COG1482         203 DDIGELRELHLFKAKDVITLPTQPRKQGAELTYPVPNEDFALYKWDISGTAE--FIKQESFSILLVLEGEGTLIGGGQTL  280 (312)
T ss_pred             ccchhHHhhhhccccchhhcCCcccccCceEEEeccccceEEEEEeccChhh--hccCCCcEEEEEEcCeEEEecCCEEE
Confidence            9999999999999887665433332 35567888899999999999975322  22456999999999999999999999


Q ss_pred             EeCcccEEEEcCCCc-EEEEec
Q 013464          404 AVAEGDVLFAPANTE-INITTS  424 (442)
Q Consensus       404 ~l~~G~~~~Ipa~~~-~~i~~~  424 (442)
                      .|++|+++||||..+ +++++.
T Consensus       281 ~l~~G~s~~ipa~~~~~~i~g~  302 (312)
T COG1482         281 KLKKGESFFIPANDGPYTIEGE  302 (312)
T ss_pred             EEcCCcEEEEEcCCCcEEEEec
Confidence            999999999999976 999873

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=100.00  E-value=4.7e-65  Score=508.29  Aligned_cols=299  Identities=29%  Similarity=0.398  Sum_probs=243.9

Q ss_pred             cEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeee-ecCCCCeEEecCCCCCccccccccCCCCCCCCC
Q 013464           11 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMG-THESGPSFLAKKGGAGGVAGAVVNGSSANGGCG   89 (442)
Q Consensus        11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g-~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~~   89 (442)
                      +++|+|++++|+|||.    .|++++|.    +.+ ++++||+|++ +||+++|+|.+++                   +
T Consensus         1 ~~~~~p~~~~~~WGG~----~l~~~~g~----~~~-~~~~aE~W~~s~hp~~~S~v~~g~-------------------~   52 (302)
T TIGR00218         1 PLFIFPVFKERDWGGT----ALADLFGY----SIP-SQQTGECWAGSAHPKGPSTVLNGP-------------------Y   52 (302)
T ss_pred             CccccccccccCccHH----HHHHHhCC----CCC-CCCccceEEEEecCCCceEEecCC-------------------c
Confidence            5789999999999984    69998853    333 3689999995 9999999997653                   2


Q ss_pred             ccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccchh
Q 013464           90 EIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFE  169 (442)
Q Consensus        90 ~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~f~  169 (442)
                      ++++|.++|+++|++||+...+    +||||+|+||++++|||||||||++|++++..       +.||+|+||+     
T Consensus        53 ~g~~L~~~i~~~~~llG~~~~~----~~P~L~KiLda~~~LSIQVHPdD~~a~~~~~~-------~~gk~e~w~i-----  116 (302)
T TIGR00218        53 KGVSLIDLWEKHRELLGRADGD----RFPFLFKVLDAAKPLSIQVHPDDDYAELHEEG-------ELGKTECWYI-----  116 (302)
T ss_pred             CCCCHHHHHHhCHHhhCCcccc----cCceEEEEecCCCCceeEECCChHHHHhcccc-------ccccEEEEEe-----
Confidence            4789999999999999987642    59999999999999999999999999987532       3799999998     


Q ss_pred             hhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccC
Q 013464          170 ALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKESQ  249 (442)
Q Consensus       170 al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~~~~  249 (442)
                                    +++.++++.++|....                             .++++.+++            
T Consensus       117 --------------~~~~~~~~~~~g~~~~-----------------------------~~~~~~~~i------------  141 (302)
T TIGR00218       117 --------------IDCDEAAEIIKGHLKN-----------------------------SKEELWTMI------------  141 (302)
T ss_pred             --------------ecCCccHHhhhcchhc-----------------------------ChHHHHHHH------------
Confidence                          5777888888886532                             122222111            


Q ss_pred             CCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCCCChhH
Q 013464          250 VRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQT  329 (442)
Q Consensus       250 ~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~~dv~~  329 (442)
                                          |.|.|. .+||+++|+|||+|||||||+|||..|.++|||||||||||+|+|+|++|+++
T Consensus       142 --------------------~~g~~~-~~ln~v~v~~Gd~i~ipaGt~HA~~g~~~~Eiq~~SD~t~R~~d~~r~l~ve~  200 (302)
T TIGR00218       142 --------------------EDGLFK-LLLNRIKLKPGDFFYVPSGTPHAYKGGLVLEVMQNSDNVYRAGDTDKYLDIEK  200 (302)
T ss_pred             --------------------hcCcHH-HHhcccccCCCCEEEeCCCCcccccCceEEEEEcCCCcEEEeeccCcccCHHH
Confidence                                124444 89999999999999999999999977788999999999999999999999999


Q ss_pred             hhccccccCCCccccccccCC-CcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcc
Q 013464          330 LCSMLTYKQGFPEILKGFPLS-PYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEG  408 (442)
Q Consensus       330 ll~~l~~~~~~~~~~~~~~~~-~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G  408 (442)
                      +++|++|+..++......+.. +....|.+++++|++.++++.+..  .....++++|++|++|+++|.++++++.+++|
T Consensus       201 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~--~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G  278 (302)
T TIGR00218       201 LVEVLTFPHVPEFHLKGQPQKFGAEILFMVPTEYFSVYKWDISGKA--EFIQQQSALILSVLEGSGRIKSGGKTLPLKKG  278 (302)
T ss_pred             HHhhccCCCCCccccccccccCCcEEEEcCCCCCeEEEEEEeCCce--eeccCCCcEEEEEEcceEEEEECCEEEEEecc
Confidence            999999988776543333332 335678888999999999997543  23345789999999999999988889999999


Q ss_pred             cEEEEcCCCc-EEEEecCcEEEEEEE
Q 013464          409 DVLFAPANTE-INITTSSKLQLYRAG  433 (442)
Q Consensus       409 ~~~~Ipa~~~-~~i~~~~~~~~~~a~  433 (442)
                      +++||||+.+ +++.+  +.+++.++
T Consensus       279 ~~~~ipa~~~~~~i~g--~~~~~~~~  302 (302)
T TIGR00218       279 ESFFIPAHLGPFTIEG--ECEAIVSH  302 (302)
T ss_pred             cEEEEccCCccEEEEe--eEEEEEEC
Confidence            9999999996 99975  56666653

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PRK11171 hypothetical protein; Provisional

Probab=98.13  E-value=9.8e-05  Score=72.88  Aligned_cols=63  Identities=17%  Similarity=0.166  Sum_probs=53.5

Q ss_pred             CceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          361 DEFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      ..|.+.++++++|..+... ....-.++.|++|++++..+++.+.|.+||+++++++....+.+
T Consensus       182 ~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N  245 (266)
T PRK11171        182 FDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYA  245 (266)
T ss_pred             CCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEEC
Confidence            3479999999988765442 34456899999999999999999999999999999999877776

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=97.94  E-value=0.00013  Score=71.78  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=53.8

Q ss_pred             CceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464          361 DEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLY  430 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~  430 (442)
                      .+|.+..+++.+|...-. ..+.-...+.+++|+|.+..+++...+++||+++|||++.-.+.+  +++++.+
T Consensus       177 ~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l  249 (260)
T TIGR03214       177 FDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYL  249 (260)
T ss_pred             CCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence            478899999988865421 222335789999999999999999999999999999999855554  4445443

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=97.80  E-value=0.00043  Score=60.68  Aligned_cols=83  Identities=10%  Similarity=0.043  Sum_probs=64.7

Q ss_pred             ECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEE-e-CCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEE
Q 013464          356 YLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSML-T-ASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAG  433 (442)
Q Consensus       356 y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~-~-~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~  433 (442)
                      +..+...|.+.++.+.+|............+++|++|++++. . +++++.|++||++++|++..-.+++.+++.++.+.
T Consensus        28 ~~~~~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v~  107 (125)
T PRK13290         28 LKDDGMGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCVF  107 (125)
T ss_pred             EecCCCCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEEE
Confidence            344567799999999887543222223357999999999998 6 49999999999999999998778776788888887


Q ss_pred             cCCCc
Q 013464          434 VNSRF  438 (442)
Q Consensus       434 ~~~~~  438 (442)
                      .|..|
T Consensus       108 tP~~~  112 (125)
T PRK13290        108 NPPLT  112 (125)
T ss_pred             CCCCC
Confidence            76543

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.70  E-value=0.00038  Score=60.98  Aligned_cols=77  Identities=17%  Similarity=0.274  Sum_probs=61.9

Q ss_pred             CCceEEEEEEeCCCCeeeccC-CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec--CcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPA-VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS--SKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~-~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~--~~~~~~~a~~~~  436 (442)
                      .+.|.+.++.+..+..+.+.. .....+++|++|+|++..+++...|+.||+++||+++.-++++.  .++.++....|.
T Consensus        33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~  112 (127)
T COG0662          33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPP  112 (127)
T ss_pred             CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCC
Confidence            467999999998776543322 23688999999999999999999999999999999999888874  456777766554

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=97.62  E-value=0.0025  Score=65.77  Aligned_cols=76  Identities=12%  Similarity=0.108  Sum_probs=55.6

Q ss_pred             CCceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEe-----CCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLT-----ASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR  431 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~-----~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~  431 (442)
                      ...|++.++++..|.....-.+ ..-.++.|++|++++..     ++++..+++||+++||++..-.+++  +++++++.
T Consensus       242 ~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~  321 (367)
T TIGR03404       242 SKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLE  321 (367)
T ss_pred             cceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEE
Confidence            4568888999987754322112 24579999999998874     2457899999999999999866665  45777777


Q ss_pred             EEcC
Q 013464          432 AGVN  435 (442)
Q Consensus       432 a~~~  435 (442)
                      ++-.
T Consensus       322 if~s  325 (367)
T TIGR03404       322 VFKA  325 (367)
T ss_pred             EECC
Confidence            7644

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=97.62  E-value=0.00049  Score=53.02  Aligned_cols=65  Identities=20%  Similarity=0.368  Sum_probs=47.8

Q ss_pred             EEeCCCCeeeccCCCCe-EEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          368 CILPKGTSSVFPAVSGP-SIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       368 i~~~~~~~~~~~~~~~~-~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      +++.+|........... .+++|++|++++..+++...+++||++++|++....+.+  ++++.++..
T Consensus         3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V   70 (71)
T PF07883_consen    3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV   70 (71)
T ss_dssp             EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred             EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            44555544322223334 899999999999999999999999999999999866665  455555544

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=97.20  E-value=0.003  Score=57.20  Aligned_cols=77  Identities=13%  Similarity=0.233  Sum_probs=63.5

Q ss_pred             CCceEEEEEEeCCCCeeeccC-CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPA-VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~-~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      .+.|.+.++.+.+|..+.+-. ......++|++|.+.+..++....+.+|++++||++..-++.+  +.++.++..-.+.
T Consensus        60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G~  139 (151)
T PF01050_consen   60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTGE  139 (151)
T ss_pred             cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecCC
Confidence            567999999999987655432 2457789999999999999999999999999999999988876  4577877766554

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.87  E-value=0.007  Score=52.89  Aligned_cols=65  Identities=17%  Similarity=0.316  Sum_probs=52.9

Q ss_pred             CCCceEEEEEEeCCCCeeeccCCC-CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          359 PFDEFEVDCCILPKGTSSVFPAVS-GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       359 p~~~F~l~~i~~~~~~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      +...+.+..+.+.+|.....-..+ +..+++|++|.+++..+++...++.||+++||++..-.+.+
T Consensus        39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a  104 (131)
T COG1917          39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKA  104 (131)
T ss_pred             CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeecc
Confidence            467788889999888655433444 67999999999999988999999999999999998744433

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=96.72  E-value=0.0039  Score=54.79  Aligned_cols=56  Identities=23%  Similarity=0.343  Sum_probs=48.9

Q ss_pred             CCeEEEEEEcCcEEEEeC---CcEEEeCcccEEEEcCCCc-EEEEecCcEEEEEEEcCCC
Q 013464          382 SGPSIFLVTDGEGSMLTA---SHNDAVAEGDVLFAPANTE-INITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       382 ~~~~il~v~~G~~~i~~~---~~~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~~~~~  437 (442)
                      ....++.|+.|++.|.-+   |..+.++.||+++|||+++ +++.+|.+++++-||.+-.
T Consensus        63 ~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~sS~DF~VvGaYp~G~  122 (163)
T COG4297          63 GAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLHSSADFQVVGAYPPGQ  122 (163)
T ss_pred             CcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccccccCCCCeEEEcccCCcc
Confidence            456799999999999754   5699999999999999999 9999889999999987643

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=96.71  E-value=0.005  Score=55.61  Aligned_cols=70  Identities=16%  Similarity=0.265  Sum_probs=50.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~  437 (442)
                      -.|+++.-.+      .. ....-.+-+|++|+.+|..+|+.+..++||++|||.+..+++.+.+.++++-+..|..
T Consensus        80 Gf~~le~~~f------~w-tl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yPa~  149 (152)
T PF06249_consen   80 GFMELEKTSF------PW-TLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYPAN  149 (152)
T ss_dssp             EEEEEEEEEE------EE-E-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEESTT
T ss_pred             EEEEEeCCCc------cE-EeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecCCCEEEEEEECCCc
Confidence            4466665433      21 2345678999999999999999999999999999999999997755666666555543

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=96.56  E-value=0.076  Score=56.80  Aligned_cols=77  Identities=13%  Similarity=0.202  Sum_probs=61.7

Q ss_pred             CCceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      ...|.+.++++.+|...... ...+-.+++|++|++++.-+++++.|.+||+++||++..-++++  +.+++++.+..+.
T Consensus       382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~  461 (478)
T PRK15460        382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGS  461 (478)
T ss_pred             CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence            56799999999887533211 22455899999999999999999999999999999999877776  5678887776553

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=96.53  E-value=0.05  Score=44.45  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=51.0

Q ss_pred             EECCCCCceEEEEEEeCCCCeee-ccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464          355 RYLPPFDEFEVDCCILPKGTSSV-FPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR  431 (442)
Q Consensus       355 ~y~~p~~~F~l~~i~~~~~~~~~-~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~  431 (442)
                      .+..  +.|+.-.++++++..-. -...+...++.|++|.+.++-.+.+..+.+|++++||++..+.|++  ..++.++-
T Consensus         6 ~f~~--~~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF   83 (85)
T PF11699_consen    6 LFDT--PFFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF   83 (85)
T ss_dssp             E--T--TS-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred             EcCC--CCceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence            4444  37999999997664322 1234567899999999999999999999999999999999999987  44455543

>smart00835 Cupin_1 Cupin

Probab=96.46  E-value=0.032  Score=49.78  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=53.6

Q ss_pred             CCceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeCCc------EEEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTASH------NDAVAEGDVLFAPANTEINITT--SSKLQLY  430 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~~~------~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~  430 (442)
                      ...+.+.++++.++.......+ ....+++|++|++++...++      ...+++||+++||++....+.+  +.++.++
T Consensus        27 ~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l  106 (146)
T smart00835       27 GLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV  106 (146)
T ss_pred             cCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEE
Confidence            4579999999987764332222 35789999999999976443      7899999999999998755554  4566666


Q ss_pred             E
Q 013464          431 R  431 (442)
Q Consensus       431 ~  431 (442)
                      .
T Consensus       107 ~  107 (146)
T smart00835      107 A  107 (146)
T ss_pred             E
Confidence            4

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=96.36  E-value=0.017  Score=49.01  Aligned_cols=59  Identities=20%  Similarity=0.307  Sum_probs=41.7

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecC--cEEEEEEEcCCCcc
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSS--KLQLYRAGVNSRFL  439 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~--~~~~~~a~~~~~~~  439 (442)
                      .+.+.|.+|++|++++..+++.+.+++|+.++||++....+....  +...+..+.+.+++
T Consensus        21 h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~~~~~   81 (136)
T PF02311_consen   21 HDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFSPDFL   81 (136)
T ss_dssp             T-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GG
T ss_pred             CCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEECHHHH
Confidence            567999999999999999999999999999999999986665533  67777777766654

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=96.33  E-value=0.04  Score=51.14  Aligned_cols=57  Identities=12%  Similarity=0.125  Sum_probs=47.5

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCCC
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNSR  437 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~~  437 (442)
                      +.+..+++|++|++++..+++.+.|+.||++++|++..-.+.+  +.+++++.+..|..
T Consensus       126 h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~~  184 (185)
T PRK09943        126 HQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPTT  184 (185)
T ss_pred             cCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCCC
Confidence            4668999999999999999999999999999999998855654  45677777766543

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=96.21  E-value=0.045  Score=53.91  Aligned_cols=71  Identities=13%  Similarity=0.259  Sum_probs=54.6

Q ss_pred             CceEEEEEEeCCCCeeec-cCCCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVF-PAVSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR  431 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~-~~~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~  431 (442)
                      ..|.+..+++.++..... ....+ -..++|++|++++..++++..|+.||++++|++...++.+  +.+++++.
T Consensus        56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~  130 (260)
T TIGR03214        56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKWTLANAQAEDARFFL  130 (260)
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence            579999999977532211 11233 5799999999999999999999999999999999988876  34555544

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=96.05  E-value=0.071  Score=52.66  Aligned_cols=74  Identities=15%  Similarity=0.247  Sum_probs=57.3

Q ss_pred             CCceEEEEEEeCCCCeeeccCC--CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAV--SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAG  433 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~--~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~  433 (442)
                      ...|.+.++++.++........  .+-.+++|++|++++..++++..|..||++++|++...++.+  +..++++.+.
T Consensus        58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~  135 (266)
T PRK11171         58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR  135 (266)
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            5679999999987643221111  346789999999999999999999999999999999877765  4566666553

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=95.85  E-value=0.24  Score=52.94  Aligned_cols=77  Identities=13%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             CCceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      .+.|.+.++++.+|...... ....-.+++|++|++++..++++..|++||++++|++..-++.+  +.+++++.+..+.
T Consensus       373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~  452 (468)
T TIGR01479       373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS  452 (468)
T ss_pred             CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence            46799999999887643211 12344567999999999999999999999999999999877775  5678888877654

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=95.84  E-value=0.12  Score=45.09  Aligned_cols=78  Identities=10%  Similarity=0.083  Sum_probs=63.1

Q ss_pred             CCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464          359 PFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--ASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS  436 (442)
Q Consensus       359 p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~  436 (442)
                      +---|++....+.+|....+.-.+-...+.|++|+|+|+.  .|+...+++|..+.+-....-.+++..++.++.+|.|+
T Consensus        31 DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCVFnPp  110 (126)
T PF06339_consen   31 DGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDMRLVCVFNPP  110 (126)
T ss_pred             CCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCEEEEEEcCCC
Confidence            4456999998888776544444566888999999999986  57899999999999999988778876688888888764

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=95.77  E-value=0.061  Score=42.56  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe-CCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT-ASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      ..-|..-..+..++. ..... ..-..+.|++|+++|+. +|+...+++||++++|++...+...
T Consensus         4 ~g~~~~g~w~~~pg~-~~~~~-~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v   66 (74)
T PF05899_consen    4 DGVFSAGVWECTPGK-FPWPY-PEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEV   66 (74)
T ss_dssp             CTSEEEEEEEEECEE-EEEEE-SSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred             CCCEEEEEEEECCce-eEeeC-CCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEE
Confidence            344666666665543 22221 23677899999999998 6779999999999999998765543

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=95.33  E-value=0.072  Score=51.21  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~  437 (442)
                      .+...+.+|++|+.++..+++++.+++||++|||.+..+++...+..+++....|..
T Consensus       173 l~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~~Pa~  229 (233)
T PRK15457        173 LNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVAWPAN  229 (233)
T ss_pred             ccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEEEecCc
Confidence            456889999999999999999999999999999999986775444566655555554

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=94.86  E-value=0.11  Score=51.19  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             EEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCC-cEEEeCcc--------cEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464          367 CCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTAS-HNDAVAEG--------DVLFAPANTEINITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       367 ~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~-~~~~l~~G--------~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~  437 (442)
                      .+++..++++.....+.=..+++++|.++++.++ +...+..-        ++++||.+..+++.++.+++++++..+..
T Consensus        31 ~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sapa~  110 (261)
T PF04962_consen   31 VLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSAPAH  110 (261)
T ss_dssp             CEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEEE-S
T ss_pred             EEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEccccC
Confidence            3444456555444333445677889999999987 67777777        99999999999998877899998876544

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=94.26  E-value=0.42  Score=42.41  Aligned_cols=73  Identities=16%  Similarity=0.193  Sum_probs=47.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEE--eC-C-------cEEE--eCcccEEEEcCCCcEEEEec--Cc
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSML--TA-S-------HNDA--VAEGDVLFAPANTEINITTS--SK  426 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~--~~-~-------~~~~--l~~G~~~~Ipa~~~~~i~~~--~~  426 (442)
                      ..+.+..+.++++.....--++...+++|++|++++.  .. +       ....  +++||+++||++....+.+.  .+
T Consensus        32 ~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~  111 (144)
T PF00190_consen   32 NGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDE  111 (144)
T ss_dssp             TTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSS
T ss_pred             cceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCC
Confidence            4567777776666432211136899999999999964  22 2       2344  99999999999998667664  34


Q ss_pred             EEEEEEE
Q 013464          427 LQLYRAG  433 (442)
Q Consensus       427 ~~~~~a~  433 (442)
                      ...+.++
T Consensus       112 ~~~~~~f  118 (144)
T PF00190_consen  112 ALVLIIF  118 (144)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            4444443

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=94.10  E-value=0.071  Score=46.59  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=25.0

Q ss_pred             eeECCCCCEEEecCCCceeee-cCc--E--EEEeecC
Q 013464          281 YVKLNPGQALYLGANEPHAYI-SGE--C--IECMATS  312 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~-~G~--~--vEim~~S  312 (442)
                      .+.|++||++|||+|++|-+- .|.  +  +||++..
T Consensus        76 ~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~  112 (127)
T COG0662          76 EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPP  112 (127)
T ss_pred             EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCC
Confidence            456999999999999999864 344  3  5887764

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=93.58  E-value=0.27  Score=50.17  Aligned_cols=55  Identities=15%  Similarity=0.220  Sum_probs=43.3

Q ss_pred             CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464          382 SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       382 ~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~  437 (442)
                      ...+|+.|++|+|+..-+++.+.+++||+|.||+-..++..++++.. +..+.+.|
T Consensus       269 T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f~vPsW~~~~h~a~~da~-Lf~~~D~P  323 (335)
T TIGR02272       269 TDATVFCVVEGRGQVRIGDAVFRFSPKDVFVVPSWHPVRFEASDDAV-LFSFSDRP  323 (335)
T ss_pred             cccEEEEEEeCeEEEEECCEEEEecCCCEEEECCCCcEecccCCCeE-EEEecCHH
Confidence            34789999999999999999999999999999998777776654543 33334443

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=93.39  E-value=0.33  Score=43.63  Aligned_cols=48  Identities=21%  Similarity=0.346  Sum_probs=39.7

Q ss_pred             eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEE
Q 013464          384 PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYR  431 (442)
Q Consensus       384 ~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~  431 (442)
                      -.+-+|++|...+..++.+...++||.+|||.+..+++...+.++.+-
T Consensus       119 De~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst~gea~fly  166 (176)
T COG4766         119 DEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFLY  166 (176)
T ss_pred             cceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEeccceEEEEE
Confidence            456789999999999999999999999999999988886644454433

>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]

Probab=93.37  E-value=0.6  Score=44.91  Aligned_cols=73  Identities=12%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             eEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCc-------EEE---eCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          363 FEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASH-------NDA---VAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~-------~~~---l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      |.+.++  ..|+++.....+.=.|++++.|.+++...+.       +..   =++-++++||++...++++..++++..|
T Consensus        31 F~~~~L--~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAvC  108 (270)
T COG3718          31 FRLLRL--AAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAVC  108 (270)
T ss_pred             EEEEEc--cCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEEE
Confidence            666555  4676666555567789999999999986532       222   3355999999999999988778899998


Q ss_pred             EcCCC
Q 013464          433 GVNSR  437 (442)
Q Consensus       433 ~~~~~  437 (442)
                      +.|..
T Consensus       109 ~AP~~  113 (270)
T COG3718         109 SAPGK  113 (270)
T ss_pred             eCCCC
Confidence            87753

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=93.34  E-value=0.051  Score=46.80  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=18.8

Q ss_pred             cceeeECCCCCEEEecCCCcee
Q 013464          278 FFNYVKLNPGQALYLGANEPHA  299 (442)
Q Consensus       278 ~Ln~v~l~pGd~i~ipaGt~HA  299 (442)
                      +=.+..+.|||+||||||+||-
T Consensus        86 LE~ha~~~pGDf~YiPpgVPHq  107 (142)
T COG4101          86 LEEHAEVGPGDFFYIPPGVPHQ  107 (142)
T ss_pred             eeeeEEecCCCeEEcCCCCCCc
Confidence            3346679999999999999996

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=93.00  E-value=1.3  Score=39.37  Aligned_cols=78  Identities=10%  Similarity=0.067  Sum_probs=58.1

Q ss_pred             CCceEEEEEEeCCCCeeeccC-CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPA-VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~-~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~  437 (442)
                      .....+.++.......+.... .+.+.+.+.++|.+.++.++....+.+|+.++++++..+++..+++.+.+...+|..
T Consensus        31 lg~~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~ip~~  109 (172)
T PF14525_consen   31 LGGLRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRIPRA  109 (172)
T ss_pred             eCCEEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEECCCccEEEEEECHH
Confidence            445677777665443333333 346889999999999999999999999999999999988887665666666555543

>PF12852 Cupin_6: Cupin

Probab=92.91  E-value=0.55  Score=43.33  Aligned_cols=55  Identities=20%  Similarity=0.271  Sum_probs=42.2

Q ss_pred             EeCCCCeeeccCCCCeEEEEEEcCcEEEEeC--CcEEEeCcccEEEEcCCCcEEEEe
Q 013464          369 ILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--SHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       369 ~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      ++.+.+.+..+......+.+|++|++.+..+  ++.+.|+.||.+++|.+....+..
T Consensus        21 ~~~~~W~~~~~~~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~   77 (186)
T PF12852_consen   21 ELCGPWGLRFPGSPGASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSS   77 (186)
T ss_pred             EEeCCcEEeccCCCceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence            3344455554444468899999999999854  478999999999999999877753

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=92.46  E-value=1.4  Score=39.57  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC---------CcEEEeCcccEEEEcCCCcEEEEe---cCcE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA---------SHNDAVAEGDVLFAPANTEINITT---SSKL  427 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~---------~~~~~l~~G~~~~Ipa~~~~~i~~---~~~~  427 (442)
                      .+++.++.-++.+|..--.-....=.+++|++|+|++.-.         .+++.+.++++|.||.+..-++.+   .+++
T Consensus        41 mkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDl  120 (167)
T PF02041_consen   41 MKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDL  120 (167)
T ss_dssp             -SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-E
T ss_pred             ceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcce
Confidence            5789999999977643222223455799999999999532         237889999999999999866655   2578


Q ss_pred             EEEEEEcCCC
Q 013464          428 QLYRAGVNSR  437 (442)
Q Consensus       428 ~~~~a~~~~~  437 (442)
                      +++++....|
T Consensus       121 qvlViiSrpP  130 (167)
T PF02041_consen  121 QVLVIISRPP  130 (167)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEecCCC
Confidence            8887766554

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=92.39  E-value=0.62  Score=45.99  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=38.0

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      ++.+.|+++++|++++..++..+.+.+|+.+|||++.-..+..
T Consensus        36 H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~   78 (290)
T PRK13501         36 HQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYES   78 (290)
T ss_pred             ccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCcccccc
Confidence            4678999999999999999999999999999999998754443

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=92.33  E-value=1.1  Score=46.39  Aligned_cols=75  Identities=12%  Similarity=0.067  Sum_probs=52.2

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe---CCcEE--EeCcccEEEEcCCCcEEEEe-cCcEEEEEEEc
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT---ASHND--AVAEGDVLFAPANTEINITT-SSKLQLYRAGV  434 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~---~~~~~--~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~  434 (442)
                      ..++..++++..+.....-.+....+++|++|++++..   +++.+  .|++||++++|++..-.+++ +...+++.++-
T Consensus        65 ~~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~  144 (367)
T TIGR03404        65 TAIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFD  144 (367)
T ss_pred             ccccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            35788888887664333222456789999999999875   34555  49999999999998755554 34566555444


Q ss_pred             C
Q 013464          435 N  435 (442)
Q Consensus       435 ~  435 (442)
                      +
T Consensus       145 ~  145 (367)
T TIGR03404       145 D  145 (367)
T ss_pred             C
Confidence            3

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=91.93  E-value=1.7  Score=40.26  Aligned_cols=65  Identities=15%  Similarity=0.263  Sum_probs=46.6

Q ss_pred             EEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CC--cEEEeCcccEEEEcCCCcEE
Q 013464          353 ITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--AS--HNDAVAEGDVLFAPANTEIN  420 (442)
Q Consensus       353 ~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~--~~~~l~~G~~~~Ipa~~~~~  420 (442)
                      ..+|..  .+|.+..+..++. ...+-...+...+.+++|+.+|..  ++  ..+.|+.||.++||+++.-+
T Consensus        27 ~~l~~~--~d~~VmvvgGpn~-r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHs   95 (177)
T PRK13264         27 KQIWQD--SDFIVMVVGGPNA-RTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHS   95 (177)
T ss_pred             eeeEcC--CCEEEEEEccCCc-ccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcC
Confidence            445652  4788887654432 222223467889999999999876  55  48999999999999998733

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=91.81  E-value=1.6  Score=39.89  Aligned_cols=66  Identities=20%  Similarity=0.272  Sum_probs=45.0

Q ss_pred             EEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CCc--EEEeCcccEEEEcCCCcEEE
Q 013464          353 ITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--ASH--NDAVAEGDVLFAPANTEINI  421 (442)
Q Consensus       353 ~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~~--~~~l~~G~~~~Ipa~~~~~i  421 (442)
                      ..+|.  ..+|.+..+.-+ +....+-...+..++.+++|+..|..  +++  .+.|+.||.++||+++..+.
T Consensus        21 ~~l~~--~~~~~v~~vgGp-n~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP   90 (159)
T TIGR03037        21 QQIWQ--DSEFMVTVVGGP-NARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSP   90 (159)
T ss_pred             eEeec--CCcEEEEEeCCC-CCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCccc
Confidence            34564  346777765322 22222223457899999999999943  343  89999999999999987443

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=91.58  E-value=2.7  Score=39.52  Aligned_cols=52  Identities=17%  Similarity=0.223  Sum_probs=39.3

Q ss_pred             CCeEEEEEEcCcEEEEeCCc-----EEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464          382 SGPSIFLVTDGEGSMLTASH-----NDAVAEGDVLFAPANTEINITT--SSKLQLYRAG  433 (442)
Q Consensus       382 ~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~  433 (442)
                      +.+.++.|++|++.+..++.     ...+++||.++||++..-++.+  +.++.++..+
T Consensus        96 ~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~  154 (191)
T PRK04190         96 DRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACY  154 (191)
T ss_pred             CCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEE
Confidence            45789999999999865422     6899999999999999855554  4566665543

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=91.45  E-value=0.11  Score=39.61  Aligned_cols=21  Identities=38%  Similarity=0.724  Sum_probs=19.5

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.+++||++++|+|+.|++.
T Consensus        38 ~~~l~~Gd~~~i~~~~~H~~~   58 (71)
T PF07883_consen   38 RVELKPGDAIYIPPGVPHQVR   58 (71)
T ss_dssp             EEEEETTEEEEEETTSEEEEE
T ss_pred             EeEccCCEEEEECCCCeEEEE
Confidence            678999999999999999975

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=91.34  E-value=0.58  Score=46.41  Aligned_cols=53  Identities=9%  Similarity=0.240  Sum_probs=44.2

Q ss_pred             EEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc-EEEEe---cCcEEEEEEEcCCC
Q 013464          385 SIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE-INITT---SSKLQLYRAGVNSR  437 (442)
Q Consensus       385 ~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~-~~i~~---~~~~~~~~a~~~~~  437 (442)
                      ..++.+.|.++|+.+++++.+.+.|+++||.+.+ +++.+   ..+++++++..|..
T Consensus        76 ~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA~  132 (276)
T PRK00924         76 LGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPAH  132 (276)
T ss_pred             EEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccccC
Confidence            4678889999999999999999999999999987 77753   24578998887653

>PRK13500 transcriptional activator RhaR; Provisional

Probab=90.95  E-value=1.1  Score=45.00  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEE
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQL  429 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~  429 (442)
                      ++.+.|++|++|++++..++..+.+.+|+.++|+++.-..+....+..+
T Consensus        66 H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~~~  114 (312)
T PRK13500         66 HDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVL  114 (312)
T ss_pred             cceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccccCCceE
Confidence            4568999999999999999999999999999999998754544333333

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=90.92  E-value=0.99  Score=43.03  Aligned_cols=40  Identities=18%  Similarity=0.380  Sum_probs=37.3

Q ss_pred             eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          384 PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       384 ~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      -..++|++|+.++..+|++..|+.|.-+|+|++.+.++++
T Consensus        84 e~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~~~N  123 (264)
T COG3257          84 ETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWTLRN  123 (264)
T ss_pred             eEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcceEee
Confidence            4689999999999999999999999999999999988885

>PRK13502 transcriptional activator RhaR; Provisional

Probab=89.81  E-value=1.1  Score=43.93  Aligned_cols=43  Identities=16%  Similarity=0.249  Sum_probs=37.5

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      .+.+.+++|++|++++..+++++.+++|+.++||++....+..
T Consensus        36 h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~   78 (282)
T PRK13502         36 HEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTS   78 (282)
T ss_pred             cceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccc
Confidence            4568999999999999999999999999999999998644443

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=89.77  E-value=1.5  Score=41.73  Aligned_cols=56  Identities=29%  Similarity=0.447  Sum_probs=41.9

Q ss_pred             CCCeEEEEEEcCcEEEEeC---Cc--EEEeCcccEEEEcCCCc-EEEE-ecCcEEEEEEEcCC
Q 013464          381 VSGPSIFLVTDGEGSMLTA---SH--NDAVAEGDVLFAPANTE-INIT-TSSKLQLYRAGVNS  436 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~---~~--~~~l~~G~~~~Ipa~~~-~~i~-~~~~~~~~~a~~~~  436 (442)
                      .+.+.|..|++|++.+...   |+  +..+++||+++||.+-+ +++. +++++.++..|++.
T Consensus       101 ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~  163 (209)
T COG2140         101 ADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD  163 (209)
T ss_pred             CCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC
Confidence            3456799999999988642   33  67788899999999998 5553 36677777777654

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=89.68  E-value=2.7  Score=38.14  Aligned_cols=65  Identities=18%  Similarity=0.276  Sum_probs=48.0

Q ss_pred             CCceEEEEEEeCCCCeeec--cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc--EEEEec
Q 013464          360 FDEFEVDCCILPKGTSSVF--PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE--INITTS  424 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~--~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~--~~i~~~  424 (442)
                      .+.|-+.-..|++|..-..  .....=..+.||+|++++..++.++.|+.||++=.||+.+  -.+.+.
T Consensus        39 l~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN~  107 (161)
T COG3837          39 LKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLINR  107 (161)
T ss_pred             hhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEeec
Confidence            4668888888876632111  1123356788999999999999999999999999999954  556553

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=88.38  E-value=2.5  Score=41.78  Aligned_cols=56  Identities=11%  Similarity=0.040  Sum_probs=43.8

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS  436 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~  436 (442)
                      .+.+.++++++|.+.+..++..+.+.+|+.++++++..+.+...+....+...++.
T Consensus        69 ~~~~~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~~~~l~i~~  124 (302)
T PRK09685         69 DAHFFTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQGLSEQISLLLPR  124 (302)
T ss_pred             CCcEEEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCCCceeEEEEccH
Confidence            34577888999999999999999999999999999887777654455555444443

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=87.91  E-value=1.5  Score=42.96  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=35.4

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE  418 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~  418 (442)
                      ++.+.|++|++|++++..+++.+.+++|+.++||++.-
T Consensus        41 H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~   78 (278)
T PRK10296         41 HDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSH   78 (278)
T ss_pred             cccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCc
Confidence            46799999999999999999999999999999999985

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=87.71  E-value=0.38  Score=41.82  Aligned_cols=22  Identities=14%  Similarity=0.240  Sum_probs=19.2

Q ss_pred             eeeECCCCCEEEecCCCceeee
Q 013464          280 NYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ....+++||++++|||++|++.
T Consensus        82 ~~~~l~~Gd~i~ip~g~~H~~~  103 (131)
T COG1917          82 EKKELKAGDVIIIPPGVVHGLK  103 (131)
T ss_pred             CceEecCCCEEEECCCCeeeec
Confidence            3456999999999999999985

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=86.90  E-value=1.1  Score=43.80  Aligned_cols=40  Identities=10%  Similarity=0.123  Sum_probs=35.6

Q ss_pred             CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEE
Q 013464          383 GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINIT  422 (442)
Q Consensus       383 ~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~  422 (442)
                      .+.+++|++|.+++..++..+.+++|+.++||++....+.
T Consensus        44 ~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~   83 (287)
T TIGR02297        44 YYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFV   83 (287)
T ss_pred             ceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccc
Confidence            4899999999999999999999999999999999864443

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PLN00212 glutelin; Provisional

Probab=86.52  E-value=4  Score=43.89  Aligned_cols=67  Identities=16%  Similarity=0.149  Sum_probs=45.5

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC--C----------------------------cEEEeCccc
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--S----------------------------HNDAVAEGD  409 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~----------------------------~~~~l~~G~  409 (442)
                      |.-..+.|+++.++.-.-....+.+.+++|++|+|.+..-  |                            +...+++||
T Consensus        77 caGv~~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GD  156 (493)
T PLN00212         77 CTGVFVIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGD  156 (493)
T ss_pred             ccceEEEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCC
Confidence            3344577788866543221224679999999999887421  1                            125899999


Q ss_pred             EEEEcCCCcEEEEecCc
Q 013464          410 VLFAPANTEINITTSSK  426 (442)
Q Consensus       410 ~~~Ipa~~~~~i~~~~~  426 (442)
                      ++.|||+...-+.++++
T Consensus       157 ViaiPaG~~hw~yN~Gd  173 (493)
T PLN00212        157 VVALPAGVAHWFYNDGD  173 (493)
T ss_pred             EEEECCCCeEEEEeCCC
Confidence            99999999866666444

>PRK10579 hypothetical protein; Provisional

Probab=86.20  E-value=5.4  Score=33.19  Aligned_cols=48  Identities=19%  Similarity=0.363  Sum_probs=39.0

Q ss_pred             eeccCCCCeEEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEec
Q 013464          376 SVFPAVSGPSIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITTS  424 (442)
Q Consensus       376 ~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~~  424 (442)
                      +.+.+ +.+.+..|++|+.++.-.+  +...++.|++|-|||+..+.++..
T Consensus        35 y~F~T-~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~   84 (94)
T PRK10579         35 YTFST-AEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVA   84 (94)
T ss_pred             EEEcC-CCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEEC
Confidence            45543 6789999999999997543  468999999999999999888753

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=86.15  E-value=3.3  Score=33.68  Aligned_cols=67  Identities=21%  Similarity=0.105  Sum_probs=46.3

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      ...+..+++.+|..+......+..-++||+|+..-.  +  ..+.+|+-+..|++...+..+++++.+++.
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~--~--~~~~~G~~~~~p~g~~h~~~s~~gc~~~vk   89 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHPGGEEILVLEGELSDG--D--GRYGAGDWLRLPPGSSHTPRSDEGCLILVK   89 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEET--T--CEEETTEEEEE-TTEEEEEEESSCEEEEEE
T ss_pred             cCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEEC--C--ccCCCCeEEEeCCCCccccCcCCCEEEEEE
Confidence            467777778777655433356677889999987753  2  356999999999999877766666777654

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=86.13  E-value=0.88  Score=41.20  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=24.6

Q ss_pred             eECCCCCEEEecCCCceeeec-C--cE--EEEeecC
Q 013464          282 VKLNPGQALYLGANEPHAYIS-G--EC--IECMATS  312 (442)
Q Consensus       282 v~l~pGd~i~ipaGt~HAy~~-G--~~--vEim~~S  312 (442)
                      ..+++||++|||+|+.|.+.. |  .+  +|||.-.
T Consensus       104 ~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G~  139 (151)
T PF01050_consen  104 FTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTGE  139 (151)
T ss_pred             EEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecCC
Confidence            458999999999999999863 3  33  6888753

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=85.84  E-value=0.65  Score=40.64  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ...|+|||++|+|+|.+|++..
T Consensus        76 ~~~L~aGD~i~~~~~~~H~~~N   97 (125)
T PRK13290         76 VHPIRPGTMYALDKHDRHYLRA   97 (125)
T ss_pred             EEEeCCCeEEEECCCCcEEEEc
Confidence            4679999999999999999875

>PRK13503 transcriptional activator RhaS; Provisional

Probab=85.76  E-value=2.1  Score=41.61  Aligned_cols=42  Identities=17%  Similarity=0.178  Sum_probs=37.0

Q ss_pred             CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEE
Q 013464          380 AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINI  421 (442)
Q Consensus       380 ~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i  421 (442)
                      .++.+.|++|++|.+++..++..+.+++|+.++||++....+
T Consensus        32 ~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~   73 (278)
T PRK13503         32 HHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLY   73 (278)
T ss_pred             ccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchh
Confidence            356799999999999999999999999999999999876433

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=85.74  E-value=0.89  Score=37.99  Aligned_cols=29  Identities=17%  Similarity=0.290  Sum_probs=19.9

Q ss_pred             cceeeECCCCCEEEecCCCceeee-cCcEE
Q 013464          278 FFNYVKLNPGQALYLGANEPHAYI-SGECI  306 (442)
Q Consensus       278 ~Ln~v~l~pGd~i~ipaGt~HAy~-~G~~v  306 (442)
                      =..++.-+|||+|+||||+.|+.. .|.++
T Consensus        79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i  108 (114)
T PF02373_consen   79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNI  108 (114)
T ss_dssp             --EEEEEETT-EEEE-TT-EEEEEESSSEE
T ss_pred             ccccceECCCCEEEECCCceEEEEeCCceE
Confidence            456888999999999999999944 66664

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=85.47  E-value=5.2  Score=42.14  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCC-eeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEE
Q 013464          363 FEVDCCILPKGT-SSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAG  433 (442)
Q Consensus       363 F~l~~i~~~~~~-~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~  433 (442)
                      ..+..+..+.+- ...+.+.++-.++++-+|+++|.++=..+.+++||.++||.++.+++...++.+.|+.-
T Consensus       125 ~ai~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E  196 (424)
T PF04209_consen  125 VAIHVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE  196 (424)
T ss_dssp             EEEEEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred             cEEEEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence            444445444332 12233567888899999999999987889999999999999999888776788887764

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=85.12  E-value=0.66  Score=39.08  Aligned_cols=24  Identities=25%  Similarity=0.596  Sum_probs=16.4

Q ss_pred             eeeECCCCCEEEecCCCceeeecC
Q 013464          280 NYVKLNPGQALYLGANEPHAYISG  303 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~G  303 (442)
                      ....++|||.+++|+|++|++..-
T Consensus        41 ~~~~l~~g~~~li~p~~~H~~~~~   64 (136)
T PF02311_consen   41 QEYPLKPGDLFLIPPGQPHSYYPD   64 (136)
T ss_dssp             EEEEE-TT-EEEE-TTS-EEEEE-
T ss_pred             EEEEEECCEEEEecCCccEEEecC
Confidence            457899999999999999998643

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=84.89  E-value=4.8  Score=34.84  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             ECCCCCceEEEEEEeCCCC-eeeccCCCCeEEEEEEcCcEEEEe-CCcEEEeCcccEEEEcCCCcEEE
Q 013464          356 YLPPFDEFEVDCCILPKGT-SSVFPAVSGPSIFLVTDGEGSMLT-ASHNDAVAEGDVLFAPANTEINI  421 (442)
Q Consensus       356 y~~p~~~F~l~~i~~~~~~-~~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~Ipa~~~~~i  421 (442)
                      +..+..-+..-..+...|. ...   .+....+-+|+|.++++. +|+.+.++.||++++|++...+.
T Consensus        38 ~~~~dg~~~~GiWe~TpG~~r~~---y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W  102 (116)
T COG3450          38 YGAPDGQVETGIWECTPGKFRVT---YDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTW  102 (116)
T ss_pred             eeCCCCCeeEeEEEecCccceEE---cccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEE
Confidence            3333444555555554442 222   234677789999999986 47789999999999999986433

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=83.27  E-value=6.8  Score=32.62  Aligned_cols=48  Identities=21%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             eeccCCCCeEEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEec
Q 013464          376 SVFPAVSGPSIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITTS  424 (442)
Q Consensus       376 ~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~~  424 (442)
                      +.+.+ ..+.+..|++|+.++.-.+  +......|++|-|||+..+.++-.
T Consensus        35 Y~F~T-~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~   84 (94)
T PF06865_consen   35 YTFGT-SAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVK   84 (94)
T ss_dssp             EEEEE-SS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEES
T ss_pred             EEEcC-CCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEEC
Confidence            44443 5789999999999997643  478899999999999999888764

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=83.25  E-value=1.8  Score=46.25  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=29.6

Q ss_pred             eeeECCCCCEEEecCCCceeee---cCcE--EEEeecC----CceEEc
Q 013464          280 NYVKLNPGQALYLGANEPHAYI---SGEC--IECMATS----DNVVRA  318 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~---~G~~--vEim~~S----Dnt~R~  318 (442)
                      ..+.|++||++|+|+|++|.+.   ...+  +||+..+    |-++|.
T Consensus       415 ~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~~~~~~d~vr~  462 (468)
T TIGR01479       415 ETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGSYLGEDDIIRF  462 (468)
T ss_pred             EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCCCcEEEe
Confidence            4578999999999999999887   2344  5777644    666675

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=82.34  E-value=0.96  Score=41.28  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             eeeECCCCCEEEecCCCceeeec
Q 013464          280 NYVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ..++|++||.++||+|++|+-.+
T Consensus        70 ~~v~L~eGd~flvP~gvpHsP~r   92 (159)
T TIGR03037        70 EDVPIREGDIFLLPPHVPHSPQR   92 (159)
T ss_pred             EEEEECCCCEEEeCCCCCccccc
Confidence            46889999999999999999754

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=82.03  E-value=1.8  Score=46.34  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             eeECCCCCEEEecCCCceeee---cCcE--EEEeecC----CceEEcC
Q 013464          281 YVKLNPGQALYLGANEPHAYI---SGEC--IECMATS----DNVVRAG  319 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~---~G~~--vEim~~S----Dnt~R~g  319 (442)
                      .+.|.|||++++|+|++|.|-   ...+  |||+.-+    |-.+|..
T Consensus       425 ~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~yl~edDivr~~  472 (478)
T PRK15460        425 IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFA  472 (478)
T ss_pred             EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCCCcEEEee
Confidence            478999999999999999765   3445  5887765    6667753

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=81.86  E-value=0.78  Score=46.46  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=15.7

Q ss_pred             ceeeECCCCCEEEecCCCceeee
Q 013464          279 FNYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       279 Ln~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .-.+.|+|||.+|||.|++|.-.
T Consensus       175 ~~~~~L~pGD~LYlPrG~~H~~~  197 (319)
T PF08007_consen  175 VEEVVLEPGDVLYLPRGWWHQAV  197 (319)
T ss_dssp             SEEEEE-TT-EEEE-TT-EEEEE
T ss_pred             eEEEEECCCCEEEECCCccCCCC
Confidence            33678999999999999999844

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=81.85  E-value=5.9  Score=33.20  Aligned_cols=63  Identities=17%  Similarity=0.259  Sum_probs=41.1

Q ss_pred             EEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec-CcEEEEE
Q 013464          367 CCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS-SKLQLYR  431 (442)
Q Consensus       367 ~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~-~~~~~~~  431 (442)
                      -++++++.++.++ +.+.-..+.|++|++++..  +...+..|+.+++..+..+++++. .+.+++.
T Consensus         3 di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~--~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~ll   67 (104)
T PF05726_consen    3 DIKLEPGASFTLPLPPGHNAFIYVLEGSVEVGG--EEDPLEAGQLVVLEDGDEIELTAGEEGARFLL   67 (104)
T ss_dssp             EEEE-TT-EEEEEEETT-EEEEEEEESEEEETT--TTEEEETTEEEEE-SECEEEEEESSSSEEEEE
T ss_pred             EEEECCCCEEEeecCCCCEEEEEEEECcEEECC--CcceECCCcEEEECCCceEEEEECCCCcEEEE
Confidence            3556666555443 2345678899999988754  336799999999996667888875 5566554

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=81.42  E-value=7.3  Score=36.40  Aligned_cols=76  Identities=21%  Similarity=0.242  Sum_probs=39.9

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe---CC----c--EEEeCcccEEEEcCCCc-EEEEecCcEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT---AS----H--NDAVAEGDVLFAPANTE-INITTSSKLQL  429 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~---~~----~--~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~  429 (442)
                      ..+|...+=++.+...   ...+.+.++.|++|+|.+--   ++    +  .+.+++|+.++||++.. .+|..+..--+
T Consensus        63 G~E~~~T~GH~H~~~~---~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~  139 (182)
T PF06560_consen   63 GGEYFMTKGHYHPISP---CGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLV  139 (182)
T ss_dssp             TTEE-B---BB-SS-------TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EE
T ss_pred             CCccccCCCccCCccc---cCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCCcEE
Confidence            3556555555433221   12467999999999999852   23    2  47799999999999998 77765433344


Q ss_pred             EEEEcCCCc
Q 013464          430 YRAGVNSRF  438 (442)
Q Consensus       430 ~~a~~~~~~  438 (442)
                      +.+.++.+|
T Consensus       140 ~~~~~~~~~  148 (182)
T PF06560_consen  140 FAAWVPRDA  148 (182)
T ss_dssp             EEEEEETT-
T ss_pred             EEEEEecCC
Confidence            445555554

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=80.93  E-value=1.3  Score=40.97  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             eeeECCCCCEEEecCCCceeeec
Q 013464          280 NYVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ..+.|++||++++|++++|.|-.
T Consensus       146 ~~~~l~~Gd~~~~~~~~~H~~~n  168 (185)
T PRK09943        146 QDYHLVAGQSYAINTGIPHSFSN  168 (185)
T ss_pred             EEEEecCCCEEEEcCCCCeeeeC
Confidence            55679999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	442
1pmi_A	440	Candida Albicans Phosphomannose Isomerase Length =		2e-76
2wfp_A	394	Crystal Structure Of Mannose 6-Phosphate Isomerase		5e-43
3h1m_A	393	Crystal Structure Of Mannose 6-Phosphate Isomerase		5e-43

>pdb|1PMI|A Chain A, Candida Albicans Phosphomannose Isomerase Length = 440

Iteration: 1
 Score =  283 bits (723), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/465 (38%), Positives = 239/465 (51%), Gaps = 60/465 (12%)
Query: 7   AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDID--KPYAEFWMGTHESGPSF 64
           ++ +L R+ C  Q YDWG+ GS S V++    NS     ID  KPYAE WMGTH S PS 
Sbjct: 1   SSEKLFRIQCGYQNYDWGKIGSSSAVAQFVH-NSDPSITIDETKPYAELWMGTHPSVPSK 59
Query: 65  LXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLF 121
                                       +L+  +   P   LG+ ++ ++G   +LPFLF
Sbjct: 60  AIDLNNQ---------------------TLRDLVTAKPQEYLGESIITKFGSSKELPFLF 98
Query: 122 KVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELK 181
           KVLS+ K LSIQAHPDK+L   LH   P  Y DDNHKPEMA+A+T+FE  C F  L +L 
Sbjct: 99  KVLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLA 158
Query: 182 SVLQNVPEIVELVGSEEANRVL-------HVEMQDGEEKAKFVLQSIFTNLMTASMEMTT 234
             L  VPE+ E++G E  +  +        V  QD     K +LQ +F  LM    ++  
Sbjct: 159 KTLATVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRK-LLQKVFGKLMNTDDDVIK 217
Query: 235 KATTKLKSRLHKESQVRPLTEKE--QLVLRLEKQYPADIGVI-AAFFFNYVKLNPGQALY 291
           + T KL  R  +E QV    +    +L+ RL KQ+P DIG+       N+V LN G+A++
Sbjct: 218 QQTAKLLERTDREPQVFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMF 277
Query: 292 LGANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTY------KQGFPEILK 345
           L A +PHAYISG+ IECMA SDNVVRAG TPK +DV+ L  MLTY      KQ  P  L+
Sbjct: 278 LQAKDPHAYISGDIIECMAASDNVVRAGFTPKFKDVKNLVEMLTYSYESVEKQKMP--LQ 335
Query: 346 GFPLSP----YITRYLPPFDEFEVDCCIL--PKGTSSVFPAVSGPSIFLVTDGEGSMLTA 399
            FP S         Y PP  EF V   I    KG   V   ++GPSI + T+G+G++   
Sbjct: 336 EFPRSKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQIT 395
Query: 400 ---SHNDAVAEGDVLFAPANTEINITTSSKLQ-----LYRAGVNS 436
              S    +  G V F    + I +T  S  Q      YRA V +
Sbjct: 396 GDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVEA 440

>pdb|2WFP|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Apo Form) From Salmonella Typhimurium Length = 394

Iteration: 1
 Score =  172 bits (435), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 172/336 (51%), Gaps = 55/336 (16%)
Query: 13  RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXX 72
           +L  SVQ Y WG   S + +++LYG+ + ++    +P AE WMG H    S +       
Sbjct: 6   KLINSVQNYAWG---SKTALTELYGIANPQQ----QPMAELWMGAHPKSSSRITTAN--- 55
Query: 73  XXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALS 131
                           GE VSL+  I KN   +LG+ V +R+G +LPFLFKVL  A+ LS
Sbjct: 56  ----------------GETVSLRDAIEKNKTAMLGEAVANRFG-ELPFLFKVLCAAQPLS 98
Query: 132 IQAHPDKE-----LAKTLHKLLP-----NVYKDDNHKPEMALAITEFEALCSFISLQELK 181
           IQ HP+K       AK     +P       YKD NHKPE+  A+T F A+ +F    ++ 
Sbjct: 99  IQVHPNKRNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIV 158
Query: 182 SVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLK 241
           S+LQ V       G+  A  + H       E+    L  +F +L+    E  ++A   LK
Sbjct: 159 SLLQPV------AGAHSA--IAHFLQVPNAER----LSQLFASLLNMQGEEKSRALAVLK 206
Query: 242 SRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYI 301
           + L+ +       E  Q +  + + YP D G+ +    N VKLNPG+A++L A  PHAY+
Sbjct: 207 AALNSQQ-----GEPWQTIRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYL 261
Query: 302 SGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYK 337
            G  +E MA SDNV+RAGLTPK+ D+  L + + ++
Sbjct: 262 QGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFE 297

>pdb|3H1M|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Holo; Zinc Bound) Length = 393

Iteration: 1
 Score =  172 bits (435), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 172/336 (51%), Gaps = 55/336 (16%)
Query: 13  RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXX 72
           +L  SVQ Y WG   S + +++LYG+ + ++    +P AE WMG H    S +       
Sbjct: 5   KLINSVQNYAWG---SKTALTELYGIANPQQ----QPMAELWMGAHPKSSSRITTAN--- 54
Query: 73  XXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALS 131
                           GE VSL+  I KN   +LG+ V +R+G +LPFLFKVL  A+ LS
Sbjct: 55  ----------------GETVSLRDAIEKNKTAMLGEAVANRFG-ELPFLFKVLCAAQPLS 97
Query: 132 IQAHPDKE-----LAKTLHKLLP-----NVYKDDNHKPEMALAITEFEALCSFISLQELK 181
           IQ HP+K       AK     +P       YKD NHKPE+  A+T F A+ +F    ++ 
Sbjct: 98  IQVHPNKRNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIV 157
Query: 182 SVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLK 241
           S+LQ V       G+  A  + H       E+    L  +F +L+    E  ++A   LK
Sbjct: 158 SLLQPV------AGAHSA--IAHFLQVPNAER----LSQLFASLLNMQGEEKSRALAVLK 205
Query: 242 SRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYI 301
           + L+ +       E  Q +  + + YP D G+ +    N VKLNPG+A++L A  PHAY+
Sbjct: 206 AALNSQQ-----GEPWQTIRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYL 260
Query: 302 SGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYK 337
            G  +E MA SDNV+RAGLTPK+ D+  L + + ++
Sbjct: 261 QGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFE 296
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	1e-122
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	1e-104
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	8e-11
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	9e-09
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	2e-10
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	6e-08
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	5e-04
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	8e-04

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3 Length = 440

 Score =  362 bits (930), Expect = e-122
 Identities = 168/461 (36%), Positives = 230/461 (49%), Gaps = 52/461 (11%)

Query: 7   AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGL-NSGKRTDIDKPYAEFWMGTHESGPSFL 65
           ++ +L R+ C  Q YDWG+ GS S V++     +     D  KPYAE WMGTH S PS  
Sbjct: 1   SSEKLFRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKA 60

Query: 66  AKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLFK 122
                                      +L+  +   P   LG+ ++ ++G   +LPFLFK
Sbjct: 61  IDLNN---------------------QTLRDLVTAKPQEYLGESIITKFGSSKELPFLFK 99

Query: 123 VLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKS 182
           VLS+ K LSIQAHPDK+L   LH   P  Y DDNHKPEMA+A+T+FE  C F  L +L  
Sbjct: 100 VLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAK 159

Query: 183 VLQNVPEIVELVGSEEANRVLHVEMQDGEEKA------KFVLQSIFTNLMTASMEMTTKA 236
            L  VPE+ E++G E  +  +       E  +      + +LQ +F  LM    ++  + 
Sbjct: 160 TLATVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQ 219

Query: 237 TTKLKSRLHKESQVRPLTEKE--QLVLRLEKQYPADIGVIAA-FFFNYVKLNPGQALYLG 293
           T KL  R  +E QV    +    +L+ RL KQ+P DIG+       N+V LN G+A++L 
Sbjct: 220 TAKLLERTDREPQVFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQ 279

Query: 294 ANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPL---- 349
           A +PHAYISG+ IECMA SDNVVRAG TPK +DV+ L  MLTY     E  K        
Sbjct: 280 AKDPHAYISGDIIECMAASDNVVRAGFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPR 339

Query: 350 ----SPYITRYLPPFDEFEVDCCILP--KGTSSVFPAVSGPSIFLVTDGEGSMLTASHND 403
               +     Y PP  EF V   I    KG   V   ++GPSI + T+G+G++     + 
Sbjct: 340 SKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDS 399

Query: 404 ---AVAEGDVLFAPANTEINITTSSK-----LQLYRAGVNS 436
               +  G V F    + I +T  S         YRA V +
Sbjct: 400 TKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVEA 440

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A* Length = 394

 Score =  313 bits (802), Expect = e-104
 Identities = 127/434 (29%), Positives = 190/434 (43%), Gaps = 59/434 (13%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKKGG 70
           + +L  SVQ Y WG   S + +++LYG+         +P AE WMG H    S +     
Sbjct: 4   MQKLINSVQNYAWG---SKTALTELYGIA----NPQQQPMAELWMGAHPKSSSRIT---- 52

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKA 129
                             GE VSL+  I KN   +LG+ V +R+G +LPFLFKVL  A+ 
Sbjct: 53  ---------------TANGETVSLRDAIEKNKTAMLGEAVANRFG-ELPFLFKVLCAAQP 96

Query: 130 LSIQAHPDKELAKTLH----------KLLPNVYKDDNHKPEMALAITEFEALCSFISLQE 179
           LSIQ HP+K  ++                   YKD NHKPE+  A+T F A+ +F    +
Sbjct: 97  LSIQVHPNKRNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSD 156

Query: 180 LKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTK 239
           + S+LQ V      +        L V   +        L  +F +L+    E  ++A   
Sbjct: 157 IVSLLQPVAGAHSAIA-----HFLQVPNAER-------LSQLFASLLNMQGEEKSRALAV 204

Query: 240 LKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHA 299
           LK+ L+         E  Q +  + + YP D G+ +    N VKLNPG+A++L A  PHA
Sbjct: 205 LKAALN-----SQQGEPWQTIRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHA 259

Query: 300 YISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSP-YITRYLP 358
           Y+ G  +E MA SDNV+RAGLTPK+ D+  L + + ++      L   P+       +  
Sbjct: 260 YLQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFEPKPAGELLTAPVKSGAELDFPI 319

Query: 359 PFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE 418
           P D+F      L              +I    +GE  +        +  G+  F  A+  
Sbjct: 320 PVDDFAFSLHDLALQ--ETSIGQHSAAILFCVEGEAVLRKDEQRLVLKPGESAFIGADES 377

Query: 419 INITTSSKLQLYRA 432
             +  S   +L R 
Sbjct: 378 -PVNASGTGRLARV 390

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 5e-12
 Identities = 65/459 (14%), Positives = 128/459 (27%), Gaps = 151/459 (32%)

Query: 4   DSKAARRLLRLTCSVQK--------------YDWGRTGSDSLVSKLYGLNSGKRTDIDKP 49
                 RL     S Q+              Y +       L+S +        + + + 
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-------LMSPIKTEQRQ-PSMMTRM 111

Query: 50  YAEFWMGTHESGPSF-----------------LAKKGGAGGVAGAVVNGSSANGGCGEIV 92
           Y E     +     F                 L +   A  V   +++G     G G   
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGV---LGSG--- 162

Query: 93  SLKSWILKNPNVLGDKVLHRWGCDLPFLFKV--LSVAKALSIQAHPDKELAKTLHKLLPN 150
             K+W+  +  V     +          FK+  L++    S +   +  L K L+++ PN
Sbjct: 163 --KTWVALD--VCLSYKVQC-----KMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPN 212

Query: 151 VYKDDNHKPEMALAITEF-EALCSFISLQELKS---VLQNV--PEIVELVGSEEANRVLH 204
                +H   + L I      L   +  +  ++   VL NV   +               
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN------------ 260

Query: 205 VEMQDGEEKAKFVLQS--IFTNLMTASMEMTTKATTKLKSRLHKESQVRPLTEKEQLVLR 262
                      F L    + T   T   ++T   +    + +  +     LT  E   L 
Sbjct: 261 ----------AFNLSCKILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306

Query: 263 LEKQYPADIGVIAAFFFNYVKLN----PGQALYLGANEP--HAYISGECIECMATSDNVV 316
                             Y+       P + L      P   + I+    + +AT DN  
Sbjct: 307 ---------------LLKYLDCRPQDLPREVL---TTNPRRLSIIAESIRDGLATWDNW- 347

Query: 317 RAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKG--- 373
                 KH +   L +++   +    +L+     P   R +     F+    + P     
Sbjct: 348 ------KHVNCDKLTTII---ESSLNVLE-----PAEYRKM-----FD-RLSVFPPSAHI 387

Query: 374 TSSVFPAVSGPSIF---LVTDGEGSMLTASHNDAVAEGD 409
            + +       S+    ++      ++   H  ++ E  
Sbjct: 388 PTILL------SLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3 Length = 300

 Score = 61.9 bits (150), Expect = 8e-11
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 42/166 (25%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFW-MGTHESGPSFLAKKG 69
           + +   ++ +  WG    + + + L G              E W    H S PS      
Sbjct: 8   IFQAQENLVERPWG---GEWI-ALLKGFRQS-------GIGESWEFSAHTSRPST----- 51

Query: 70  GAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAK 128
                   V+         G+ +S+     K+ + +LG           P L +++  A 
Sbjct: 52  --------VLVK-------GQQLSMIELFSKHRDELLGRAA--EKFSKFPILVRLIDAAS 94

Query: 129 ALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSF 174
              +  HP  + A++L        + +       L   + +A   F
Sbjct: 95  PTQVHVHPSDKAAESLG-------EAEGGVESAWLVFNKGKAYAGF 133

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3 Length = 300

 Score = 55.7 bits (134), Expect = 9e-09
 Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 19/168 (11%)

Query: 251 RPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMA 310
           +   + E+L  +L+++             N  +  P     +    PHA      +E  +
Sbjct: 134 KEDVKIEELEEKLKEEDFDFKT-----LLNTFETTPYDTFVIRPGIPHAGEGLRVLEVSS 188

Query: 311 TSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCIL 370
            S             D + +  +L  K+     +KG          +   + F ++   +
Sbjct: 189 NSTLAYF----FNENDWEKVKKVLNTKKVEEFEVKGKK-------GMAETENFGLEVVDV 237

Query: 371 PKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE 418
               ++        +I    +G    L       +  G     PA+T+
Sbjct: 238 T--GTAEIKTGGVMNILYAAEGYFI-LRGKETADLHRGYSCLVPASTD 282

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3 Length = 319

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 31/187 (16%), Positives = 49/187 (26%), Gaps = 20/187 (10%)

Query: 256 KEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGE-CIECMATSDN 314
           K +LV  +                  +K+ PG   Y+ +   HA   G   +E    SD 
Sbjct: 141 KTELVTMINSGDWEG-------LLRRIKIKPGDFYYVPSGTLHALCKGALVLETQQNSDA 193

Query: 315 VVRA------GLTPKHR--DVQTLCSMLTYKQGFPEILKGFPLSPYITR-YLPPFDEFEV 365
             R             R        +  T       I +       IT       + F V
Sbjct: 194 TYRVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGYIDESTESRKGITIKTFVQGEYFSV 253

Query: 366 DCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSS 425
               +     +         I  V +G G +        + +GD    PA    + T   
Sbjct: 254 YKWDING--EAEMAQDESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMP-DFTIKG 310

Query: 426 KLQLYRA 432
              L  +
Sbjct: 311 TCTLIVS 317

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3 Length = 319

 Score = 53.1 bits (127), Expect = 6e-08
 Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 33/135 (24%)

Query: 12  LRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWM-GTHESGPSFLAKKGG 70
           + LT   ++  WG T     +   +G +        +   E W    H  GPS +A    
Sbjct: 9   IFLTPVFKEKIWGGT----ALRDRFGYSIP-----SESTGECWAISAHPKGPSTVA---- 55

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKAL 130
                           G  +  +L     ++  V G       G   P L K+L V +  
Sbjct: 56  ---------------NGPYKGKTLIELWEEHREVFGG----VEGDRFPLLTKLLDVKEDT 96

Query: 131 SIQAHPDKELAKTLH 145
           SI+ HPD   A    
Sbjct: 97  SIKVHPDDYYAGENE 111

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 370 LPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQL 429
           L  GT +      G ++F V +G G+++       + +GD+   P+    ++   ++  L
Sbjct: 286 LRAGTETATRNEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQAETQFDL 345

Query: 430 YRA 432
           +R 
Sbjct: 346 FRF 348

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 369 ILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQ 428
           +LPKG +S     +  +I+ V +G G ++  +   + +  D+   P    ++  T+    
Sbjct: 274 LLPKGFASRVARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVPTWHGVSFQTTQDSV 333

Query: 429 LYRA 432
           L+  
Sbjct: 334 LFSF 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	100.0
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	100.0
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	100.0
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	100.0
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.9
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.43
1sef_A	274	Conserved hypothetical protein; structural genomic	98.2
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.13
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.11
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.0
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	97.99
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	97.92
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	97.88
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	97.88
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	97.86
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	97.85
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	97.82
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.79
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	97.79
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	97.76
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	97.73
1v70_A	105	Probable antibiotics synthesis protein; structural	97.71
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	97.7
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	97.67
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	97.66
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.6
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	97.57
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	97.46
3h8u_A	125	Uncharacterized conserved protein with double-STR	97.43
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	97.42
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	97.39
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	97.36
4i4a_A	128	Similar to unknown protein; structural genomics, P	97.35
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	97.34
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	97.32
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	97.3
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	97.28
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	97.27
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	97.22
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	97.2
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	97.18
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	97.17
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	97.16
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	97.16
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	97.11
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	97.09
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	97.05
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	96.98
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	96.93
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	96.93
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	96.91
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	96.91
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	96.86
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	96.74
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	96.73
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	96.71
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	96.69
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	96.65
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	96.59
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	96.58
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	96.5
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	96.46
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	96.44
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	96.43
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	96.33
1sfn_A	246	Conserved hypothetical protein; structural genomic	96.3
3bcw_A	123	Uncharacterized protein; structural genomics, join	96.18
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	96.15
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	96.13
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	96.07
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	95.95
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	95.88
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	95.82
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	95.8
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	95.74
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	95.72
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	95.71
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	95.62
1sef_A	274	Conserved hypothetical protein; structural genomic	95.48
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	95.31
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	95.25
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	95.12
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	95.04
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	94.91
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	94.89
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	94.76
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	94.61
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	94.58
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	94.57
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	94.5
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	94.29
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	94.0
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	93.87
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	93.86
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	93.02
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	92.79
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	92.55
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	92.36
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	92.12
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	92.09
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	91.81
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	91.79
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	91.47
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	91.27
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	91.21
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	91.14
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	90.82
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	90.8
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	90.74
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	90.67
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	90.52
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	90.21
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	90.11
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	90.03
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	90.0
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	89.92
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	89.82
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	89.73
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	89.55
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	89.51
1v70_A	105	Probable antibiotics synthesis protein; structural	89.35
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	88.81
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	88.66
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	88.5
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	88.37
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	88.3
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	88.12
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	88.06
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	88.0
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	87.99
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	87.83
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	87.69
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	87.35
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	87.29
3h8u_A	125	Uncharacterized conserved protein with double-STR	86.98
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	86.92
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	86.52
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	86.5
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	86.48
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	86.39
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	86.18
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	86.08
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	85.98
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	85.12
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	85.04
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	84.72
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	84.6
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	84.55
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	84.54
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	84.48
3bcw_A	123	Uncharacterized protein; structural genomics, join	84.45
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	84.39
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	84.38
4i4a_A	128	Similar to unknown protein; structural genomics, P	84.34
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	84.2
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	84.12
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	84.07
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	83.83
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	83.78
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	83.46
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	83.32
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	82.88
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	82.8
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	82.05
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	81.89
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	81.78
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	81.57
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	81.52
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	81.02

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=100.00  E-value=1.2e-95  Score=757.38  Aligned_cols=405  Identities=41%  Similarity=0.704  Sum_probs=347.1

Q ss_pred             ccEEeeccccccccCCCCCchHHHHHhcC-CCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCCC
Q 013464           10 RLLRLTCSVQKYDWGRTGSDSLVSKLYGL-NSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGC   88 (442)
Q Consensus        10 ~~~~l~p~~~~y~WG~~~~~sll~~l~~~-~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~   88 (442)
                      +|++|+|.+|+|+|||+|+.+++++|.+. ++++++++++||||+|||+||++||+|.++                    
T Consensus         4 ~~~~l~p~~~~~~WGg~Gs~~l~~~l~~~~~~~~~~~~~~~~aE~W~g~hp~~~S~v~~~--------------------   63 (440)
T 1pmi_A            4 KLFRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDL--------------------   63 (440)
T ss_dssp             SEEEEEECEECCTTBEEGGGSHHHHHHHHHCTTSCCCTTSEECEEEESCCTTSCEEETTT--------------------
T ss_pred             ccEEeecccCcCCCCCCchHHHHHHHhcCCCccccCCCCCCEEEEEEEecCCCCeEEeCC--------------------
Confidence            69999999999999999877899898742 334667667899999999999999999752                    


Q ss_pred             CccccHHHHHhhCCC-cCCchhhhhcCC--CCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEc
Q 013464           89 GEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAI  165 (442)
Q Consensus        89 ~~~~~L~~li~~~p~-~lG~~~~~~~g~--~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aL  165 (442)
                       .|.+|.++|+++|. +||+...++||.  +||||+||||++++|||||||||++|+++|+++|+||||+||||||||||
T Consensus        64 -~G~~L~~~i~~~~~~llG~~~~~~fg~~~~~P~L~K~Lda~~~LSiQvHPd~~~A~~~~~~~p~~YkD~ngKpE~~y~L  142 (440)
T 1pmi_A           64 -NNQTLRDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAV  142 (440)
T ss_dssp             -TTEEHHHHHHHCHHHHTCHHHHHHHCCSSSCSEEEEEEEESSCCCEEECCCHHHHHHHHHHCTTTCCSSCCCCEEEEES
T ss_pred             -CCCCHHHHHHhChHhhcCchhhhhcCCcccCcEEEhhhccCCCCceeeCcCHHHHHHhhcccccccCCCCCCcEEEEEc
Confidence             25799999999976 999999999998  89999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhc---cccc---hhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013464          166 TEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEM---QDGE---EKAKFVLQSIFTNLMTASMEMTTKATTK  239 (442)
Q Consensus       166 t~f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~---~~~~---~~~~~~L~~~f~~~~~~~~e~~~~~i~~  239 (442)
                      +.|++|||||+.+||...|+..|+++.++|.....+|.....   .+.+   ..+++.||++|+.+|++++++++++|++
T Consensus       143 ~~~~~~~Gf~~~~ei~~~l~~~pel~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~lm~~~~~~~~~~v~~  222 (440)
T 1pmi_A          143 TDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAK  222 (440)
T ss_dssp             SCEEEEEEECCHHHHHHHHHHCHHHHHHHCHHHHHHHHHHCCCSCCTTSHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             cchhhhhcCCcHHHHHHHHhhchhhhhhhchhhhhhhhhhcccccccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999765544432111   0110   2468999999999999999999999999


Q ss_pred             HHHHhhhccCC--CCcchHHHHHHHHHhhCCCCcccch-hhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceE
Q 013464          240 LKSRLHKESQV--RPLTEKEQLVLRLEKQYPADIGVIA-AFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVV  316 (442)
Q Consensus       240 l~~~~~~~~~~--~~~~~~~~~~~~l~~~yp~D~G~~~-~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~  316 (442)
                      |++++......  .......++++||+++||+|+|+|+ ++|||+++|+|||+||||||+||||++|+||||||||||||
T Consensus       223 l~~~~~~~~~~~~~~~~~~~~~i~~L~~~yP~D~G~~~~~~lLN~v~L~pGea~flpAg~~HAYl~G~~vE~Ma~SDNV~  302 (440)
T 1pmi_A          223 LLERTDREPQVFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNVV  302 (440)
T ss_dssp             HHHHHHHCHHHHHTTCTTHHHHHHHHHHHSTTCTHHHHTTTTEEEEEECTTCEEEECTTCCEEEEEEEEEEEEESCCCCE
T ss_pred             HHHHHHhhccccccccchHHHHHHHHHHHCCCCccceehhhhcceEecCCCCEEecCCCCccccCCCcEEEEeccCCcEE
Confidence            98888641000  0001257899999999999999999 99999999999999999999999999999999999999999


Q ss_pred             EcCCCCCCCChhHhhccccccCCCccc--cccccCC-----C-cEEEECCCCCceEEEEEEeCC--CCeeeccCCCCeEE
Q 013464          317 RAGLTPKHRDVQTLCSMLTYKQGFPEI--LKGFPLS-----P-YITRYLPPFDEFEVDCCILPK--GTSSVFPAVSGPSI  386 (442)
Q Consensus       317 R~glt~k~~dv~~ll~~l~~~~~~~~~--~~~~~~~-----~-~~~~y~~p~~~F~l~~i~~~~--~~~~~~~~~~~~~i  386 (442)
                      |+|+|||++|++++++|++|++.++..  +.+.+..     + ....|.+|+++|++.++++.+  +....+....+++|
T Consensus       303 RaGlTpK~~Dv~~Ll~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~y~~P~~eF~v~~~~~~~~~~~~~~~~~~~~~~i  382 (440)
T 1pmi_A          303 RAGFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPSI  382 (440)
T ss_dssp             EEESCSSCCCHHHHHHHCCCCCCCGGGGBCCCBCCTTEEESCSEEEEECCSSSSCEEEEEECCTTTCCEEEECCCSSCEE
T ss_pred             ecCCCccccCHHHHHHhccccCCCcccccccceeccccccCCcceEEECCCCCeEEEEEEEecCCCCceeEEecCCCcEE
Confidence            999999999999999999998876654  2333221     2 367899999999999999973  43444445689999


Q ss_pred             EEEEcCcEEEEeCCc-E--EEeCcccEEEEcCCCcEEEEec-----CcEEEEEEEcC
Q 013464          387 FLVTDGEGSMLTASH-N--DAVAEGDVLFAPANTEINITTS-----SKLQLYRAGVN  435 (442)
Q Consensus       387 l~v~~G~~~i~~~~~-~--~~l~~G~~~~Ipa~~~~~i~~~-----~~~~~~~a~~~  435 (442)
                      ++|++|+++|..++. .  ..|++|+++||||+..+++++.     +.+++|+|++.
T Consensus       383 llv~~G~g~i~~~~~~~~~~~l~~G~~~fvpa~~~~~i~g~~~~~~~~~~~~~a~~~  439 (440)
T 1pmi_A          383 VIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVE  439 (440)
T ss_dssp             EEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCEEEEEECC
T ss_pred             EEEEeCeEEEEeCCcccceEEeccCCEEEEeCCCcEEEEEecccCCCcEEEEEEEec
Confidence            999999999988654 3  8999999999999966999873     46999999986

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=100.00  E-value=8.2e-96  Score=750.50  Aligned_cols=374  Identities=33%  Similarity=0.513  Sum_probs=325.0

Q ss_pred             cEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeeeeeecCCCCeEEecC-CCCCccccccccCCCCCCCCC
Q 013464           11 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLAKK-GGAGGVAGAVVNGSSANGGCG   89 (442)
Q Consensus        11 ~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~-~~~~~~~~~~~~~~~~~~~~~   89 (442)
                      |++|+|.+|+|+||++.   +++++++.    +.++++||||+|||+||++||+|.++ |                    
T Consensus         4 ~~~l~~~~~~y~WG~~~---~l~~l~g~----~~~~~~p~aE~W~gaHp~gpS~v~~~~G--------------------   56 (394)
T 2wfp_A            4 MQKLINSVQNYAWGSKT---ALTELYGI----ANPQQQPMAELWMGAHPKSSSRITTANG--------------------   56 (394)
T ss_dssp             EEECBCEEECCTTBBSS---HHHHHHCC----CCTTCCCBCEEEESCCTTSCCEECC-----------------------
T ss_pred             cEEcccccCCCCCCChh---HHHHHhCC----CCCCCCCeeEEEEEecCCCceEeecCCC--------------------
Confidence            89999999999999864   78998853    33457899999999999999999763 2                    


Q ss_pred             ccccHHHHHhhCCC-cCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcC----------CCCCCCCCCC
Q 013464           90 EIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLL----------PNVYKDDNHK  158 (442)
Q Consensus        90 ~~~~L~~li~~~p~-~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~----------~~~Y~D~n~K  158 (442)
                      ++++|.++|++||+ +||+...++||. |||||||||++++|||||||||++|+++|+.+          ||||||+|||
T Consensus        57 ~~~~L~~li~~~p~~~LG~~~~~~fg~-lP~L~KvLda~~~LSIQvHPd~~~A~~~f~~e~~~Gi~~~~~~~~Y~D~nhK  135 (394)
T 2wfp_A           57 ETVSLRDAIEKNKTAMLGEAVANRFGE-LPFLFKVLCAAQPLSIQVHPNKRNSEIGFAKENAAGIPMDAAERNYKDPNHK  135 (394)
T ss_dssp             --EEHHHHHHHCHHHHHCHHHHHHTSS-CCCEEEEEEESSCCCCEECCCHHHHHHHHHHHHHTTCCTTSTTCCBCCSSCC
T ss_pred             CccCHHHHHHhCHHHhcCcchhhhcCC-CcEEEeeeccCCCcccccCcCHHHHHHHhhhhhcccccccccccccCCCCCC
Confidence            36799999999999 999999999997 99999999999999999999999999988654          8999999999


Q ss_pred             ceeEEEccchhhhcCCCcHHHHHHHhccCcchhhhh-cchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 013464          159 PEMALAITEFEALCSFISLQELKSVLQNVPEIVELV-GSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKAT  237 (442)
Q Consensus       159 pE~w~aLt~f~al~GFr~~~ei~~~L~a~p~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i  237 (442)
                      ||||||||+|+|||||||.+||..+|++.|+++.++ |+...             .+++.||++|+.+|+.+.++.++++
T Consensus       136 pE~~yaLt~f~al~GFr~~~ei~~~l~~~p~~~~l~~~~~~~-------------~~~~~l~~~f~~~~~~~~~~~~~~~  202 (394)
T 2wfp_A          136 PELVFALTPFLAMNAFREFSDIVSLLQPVAGAHSAIAHFLQV-------------PNAERLSQLFASLLNMQGEEKSRAL  202 (394)
T ss_dssp             CEEEEESSCEEEEEEECCHHHHHHHHGGGGGGCHHHHHHHHS-------------CSHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             cEEEEEccchhhhcCCCCHHHHHHHhhcChhHHHHHHHhhcC-------------ccHHHHHHHHHHHHcCCcccHHHHH
Confidence            999999999999999999999999999999997544 43221             2578999999999999999999999


Q ss_pred             HHHHHHhhhccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEE
Q 013464          238 TKLKSRLHKESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVR  317 (442)
Q Consensus       238 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R  317 (442)
                      +.|.+++.....  .   ...++.+|++|||+|+|+|++++||+++|+|||+|||||||+|||++|+++|||||||||||
T Consensus       203 ~~l~~~~~~~~~--~---~~~~i~~l~~~yp~D~G~~~~~lLn~v~l~pGd~~fipAG~~HAy~~G~~~Eima~SDnv~R  277 (394)
T 2wfp_A          203 AVLKAALNSQQG--E---PWQTIRVISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLR  277 (394)
T ss_dssp             HHHHHHHHHCCS--T---THHHHHHHHHHCTTCGGGGHHHHEEEEEECTTCEEEECTTCCEEEEEEEEEEEECSSCBCEE
T ss_pred             HHHHHHHhcccc--c---hHHHHHHHHHHCCCCchhhHHhhheEEECCCCCEEEcCCCCceEcCCCcEEEEeccCCcEEE
Confidence            998887764211  2   45789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCChhHhhccccccCCCc--cccccccCCCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEE
Q 013464          318 AGLTPKHRDVQTLCSMLTYKQGFP--EILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGS  395 (442)
Q Consensus       318 ~glt~k~~dv~~ll~~l~~~~~~~--~~~~~~~~~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~  395 (442)
                      +|+|||++|++++++|++|+..++  ..+.+.+ .+....|.+|+++|++.+++++++ ...+ ..++++|++|++|+++
T Consensus       278 ~gltpk~~dv~~ll~vl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~F~v~~~~l~~~-~~~~-~~~~~~il~v~~G~~~  354 (394)
T 2wfp_A          278 AGLTPKYIDIPELVANVKFEPKPAGELLTAPVK-SGAELDFPIPVDDFAFSLHDLALQ-ETSI-GQHSAAILFCVEGEAV  354 (394)
T ss_dssp             CSSCSSCCCHHHHHHTCCCCBCCGGGSSCCCEE-ETTEEECCCSSSSCEEEEEECCSS-CEEE-CCSSCEEEEEEEEEEE
T ss_pred             cCCcCCccCHHHHhhhccccCCCcccccccccc-CCceEEEeCCCCEEEEEEEEEcCC-eEEe-cCCCcEEEEEEeceEE
Confidence            999999999999999999988763  2222222 245678989999999999999754 3343 4678999999999999


Q ss_pred             EEeCCcEEEeCcccEEEEcCCCc-EEEEecCcEEEEEEEcC
Q 013464          396 MLTASHNDAVAEGDVLFAPANTE-INITTSSKLQLYRAGVN  435 (442)
Q Consensus       396 i~~~~~~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~~~  435 (442)
                      |..+++++.|++|+++||||+.+ +++++  .++++++++.
T Consensus       355 l~~~~~~~~l~~G~~~fvpa~~~~~~i~g--~~~~~~~~~~  393 (394)
T 2wfp_A          355 LRKDEQRLVLKPGESAFIGADESPVNASG--TGRLARVYNK  393 (394)
T ss_dssp             EEETTEEEEECTTCEEEECGGGCCEEEEE--EEEEEEEECC
T ss_pred             EEECCeEEEEccCcEEEEeCCCceEEEEe--eeEEEEEEec
Confidence            99888889999999999999964 99976  6899999864

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=100.00  E-value=2.3e-72  Score=558.10  Aligned_cols=290  Identities=17%  Similarity=0.259  Sum_probs=241.8

Q ss_pred             ccEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeee-eeecCCCCeEEecCCCCCccccccccCCCCCCCC
Q 013464           10 RLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFW-MGTHESGPSFLAKKGGAGGVAGAVVNGSSANGGC   88 (442)
Q Consensus        10 ~~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W-~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~~   88 (442)
                      .|++|+|.+|+|+|||++    |++++|       ++++|+||+| ||+||++||+|..+|                   
T Consensus         7 ~~~~l~p~~~~~~WGG~~----l~~~~g-------~~~~~~aE~W~~~ahp~g~S~v~~~G-------------------   56 (300)
T 1zx5_A            7 FIFQAQENLVERPWGGEW----IALLKG-------FRQSGIGESWEFSAHTSRPSTVLVKG-------------------   56 (300)
T ss_dssp             CBEESSCCEEECTTCCSH----HHHHTT-------SCCSCEEEEEESCCCTTSCCEEEETT-------------------
T ss_pred             eeEEeecccccCCCChHH----HHHHhC-------CCCCceeEEEEeecccCCceEEeCCC-------------------
Confidence            699999999999999864    777774       2467999999 799999999994333                   


Q ss_pred             CccccHHHHHhhCCC-cCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccc
Q 013464           89 GEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITE  167 (442)
Q Consensus        89 ~~~~~L~~li~~~p~-~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~  167 (442)
                       .+.+|.++|++||+ +||++ .++|| +||||+||||++++|||||||||++|++++       +|+||||||||||++
T Consensus        57 -~g~~L~~li~~~~~~llG~~-~~~~~-~~P~L~KiLda~~~LSiQVHPd~~~A~~~e-------~~~~gKpE~~y~L~~  126 (300)
T 1zx5_A           57 -QQLSMIELFSKHRDELLGRA-AEKFS-KFPILVRLIDAASPTQVHVHPSDKAAESLG-------EAEGGVESAWLVFNK  126 (300)
T ss_dssp             -EEEEHHHHHHHHHHHHHBTT-TTTCS-SCCEEEEEEEECSCCCCEECCCHHHHHHTT-------CSSCCCCEEEEECSS
T ss_pred             -CCCCHHHHHHhChHHHcCcc-hhccC-CCCeEEEeecCCCCCCeeECcChHHHHHhc-------CCCCCCcEEEEEccc
Confidence             25799999999997 99998 77887 799999999999999999999999999976       346999999999999


Q ss_pred             hhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhc
Q 013464          168 FEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKE  247 (442)
Q Consensus       168 f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~~  247 (442)
                      |+++||||+..+                                                  +++++++       +++ 
T Consensus       127 ~~~~~Gf~~~~~--------------------------------------------------~~~~~~~-------l~~-  148 (300)
T 1zx5_A          127 GKAYAGFKEDVK--------------------------------------------------IEELEEK-------LKE-  148 (300)
T ss_dssp             CEEEEEESSCCC--------------------------------------------------HHHHHHH-------HTS-
T ss_pred             HHHhhCCCCCCC--------------------------------------------------HHHHHHH-------HHh-
Confidence            999999998532                                                  2222222       211 


Q ss_pred             cCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCceEEcCCCCCCCCh
Q 013464          248 SQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNVVRAGLTPKHRDV  327 (442)
Q Consensus       248 ~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R~glt~k~~dv  327 (442)
                       +  +++ +                   ..+||+++|+|||++||||||+|||++|+++||||||||||    |||++|+
T Consensus       149 -~--~~~-~-------------------~~lLn~v~l~pGd~~~ipaGt~HA~~~G~~~Eiqa~SD~t~----~pr~l~v  201 (300)
T 1zx5_A          149 -E--DFD-F-------------------KTLLNTFETTPYDTFVIRPGIPHAGEGLRVLEVSSNSTLAY----FFNENDW  201 (300)
T ss_dssp             -S--SCC-G-------------------GGGEEEEECCTTCEEEECTTCCEEEESEEEEEEEESCCCCE----ESSTTTH
T ss_pred             -C--chh-H-------------------HHHhceeECCCCCEEEcCCCCceEcCCCCeeeecccCCcee----ecccCCH
Confidence             2  210 1                   38999999999999999999999999999999999999999    9999999


Q ss_pred             hHhhccccccCCCccccccccCCCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCe-EEEEEEcCcEEEEeCCcEEEeC
Q 013464          328 QTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGP-SIFLVTDGEGSMLTASHNDAVA  406 (442)
Q Consensus       328 ~~ll~~l~~~~~~~~~~~~~~~~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~-~il~v~~G~~~i~~~~~~~~l~  406 (442)
                      +++++|++|+..++....       ...|.+|+++|++.++++++..  .+.. +++ +|++|++| ++|..+++...++
T Consensus       202 ~~~~~vl~~~~~~~~~~~-------~~~~~~~~~~F~v~~~~~~~~~--~~~~-~~~~~il~v~~G-~~i~~~~~~~~l~  270 (300)
T 1zx5_A          202 EKVKKVLNTKKVEEFEVK-------GKKGMAETENFGLEVVDVTGTA--EIKT-GGVMNILYAAEG-YFILRGKETADLH  270 (300)
T ss_dssp             HHHHHHCCCSBCCGGGTB-------CBTTEEECSSEEEEEEEEEEEE--EEEC-CSBCEEEEEEES-CEEEESSSEEEEC
T ss_pred             HHHHhhccccCCCccccc-------eeEEcCCCCeEEEEEEEECCce--EEec-CCceEEEEEccc-EEEEeCCeEEEEc
Confidence            999999999877653221       1223456899999999997533  3345 889 99999999 9999877889999


Q ss_pred             cccEEEEcCCCc-EEEEecCcEEEEEEEcCC
Q 013464          407 EGDVLFAPANTE-INITTSSKLQLYRAGVNS  436 (442)
Q Consensus       407 ~G~~~~Ipa~~~-~~i~~~~~~~~~~a~~~~  436 (442)
                      +|+++||||+.+ ++++++ +++++++|+.+
T Consensus       271 ~G~~~~ipa~~~~~~i~g~-~~~~~~a~~~~  300 (300)
T 1zx5_A          271 RGYSCLVPASTDSFTVESE-RGKIVRIYLKV  300 (300)
T ss_dssp             TTCEEEECTTCCEEEEEEE-EEEEEEEEECC
T ss_pred             cceEEEEeCCCceEEEEeC-ceEEEEEEEcC
Confidence            999999999986 999752 68999999764

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=100.00  E-value=6.5e-71  Score=552.48  Aligned_cols=302  Identities=20%  Similarity=0.225  Sum_probs=249.1

Q ss_pred             cccEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeee-eeecCCCCeEEecCCCCCccccccccCCCCCCC
Q 013464            9 RRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFW-MGTHESGPSFLAKKGGAGGVAGAVVNGSSANGG   87 (442)
Q Consensus         9 ~~~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W-~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~   87 (442)
                      ..|++|+|.+|+|+|||++    ++++++    ++++ ++|+||+| ||+||++||+|.++.                  
T Consensus         6 ~~~~~l~p~~~~~~WGg~~----l~~~~g----~~~~-~~~~aE~W~~~ahp~g~S~v~~g~------------------   58 (319)
T 1qwr_A            6 QSPIFLTPVFKEKIWGGTA----LRDRFG----YSIP-SESTGECWAISAHPKGPSTVANGP------------------   58 (319)
T ss_dssp             CSCEEEECEEEEEEEEESH----HHHHHC----CCCS-SSSEEEEEEECCCTTSCCEECSST------------------
T ss_pred             CccEEeccccCCCCCChHH----HHHHhC----CCCC-CCCcceEEEeecccCCCeEEeCCc------------------
Confidence            5799999999999999864    778774    3444 67999999 899999999998543                  


Q ss_pred             CCccccHHHHHhhCCCcCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEccc
Q 013464           88 CGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITE  167 (442)
Q Consensus        88 ~~~~~~L~~li~~~p~~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt~  167 (442)
                       +++++|.++|+++|++||+..    +.+||||+||||++++|||||||||++|+++++       |+||||||||||+.
T Consensus        59 -~~g~~L~~li~~~~~llG~~~----~~~~P~L~KiLda~~~LSiQvHPd~~~A~~~e~-------~~~gKpE~~y~L~~  126 (319)
T 1qwr_A           59 -YKGKTLIELWEEHREVFGGVE----GDRFPLLTKLLDVKEDTSIKVHPDDYYAGENEE-------GELGKTECWYIIDC  126 (319)
T ss_dssp             -TTTCBHHHHHHHCGGGGTTCC----CSSCCEEEEEEEESSCCCEEECCCHHHHHHHTT-------TCCCCCEEEEEEEE
T ss_pred             -cCCCCHHHHHHhCHHHhCCCc----cCcCceEEeeeccCCCcCcccCcCHHHHHHhcC-------CCCCCCEEEEEccC
Confidence             247899999999999999864    358999999999999999999999999999872       46999999999754


Q ss_pred             hhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhc
Q 013464          168 FEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHKE  247 (442)
Q Consensus       168 f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~~  247 (442)
                                         .|++..++|...                             .+++++++++++        
T Consensus       127 -------------------~~~~~~~~G~~~-----------------------------~~~e~l~~~i~~--------  150 (319)
T 1qwr_A          127 -------------------KENAEIIYGHTA-----------------------------RSKTELVTMINS--------  150 (319)
T ss_dssp             -------------------CTTCEEEEEECC-----------------------------SSHHHHHHHHHT--------
T ss_pred             -------------------CCchhheeCCCC-----------------------------CCHHHHHHHHHc--------
Confidence                               457777888432                             245565554433        


Q ss_pred             cCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCc-EEEEeecCCceEEc------CC
Q 013464          248 SQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGE-CIECMATSDNVVRA------GL  320 (442)
Q Consensus       248 ~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~-~vEim~~SDnt~R~------gl  320 (442)
                       +  +   +.                   ++||+++|+|||+|||||||+|||++|+ ++|||||||||||+      |+
T Consensus       151 -~--~---~~-------------------~lLn~v~l~pGd~~~ipaGt~HA~~~G~~~~Eiq~~SD~t~R~yDy~R~g~  205 (319)
T 1qwr_A          151 -G--D---WE-------------------GLLRRIKIKPGDFYYVPSGTLHALCKGALVLETQQNSDATYRVYDYDRLDS  205 (319)
T ss_dssp             -T--C---HH-------------------HHEEEEECCTTCEEEECTTCCEEECSSEEEEEEEESCCCCEEEECTTCBCT
T ss_pred             -C--C---HH-------------------HhceEEEcCCCCEEEcCCCCceEecCCCeEEEEEeCCccEEEcccccccCC
Confidence             3  3   43                   8999999999999999999999999999 59999999999998      99


Q ss_pred             C--CCCCChhHhhccccccCCCccccccccC-CCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEE
Q 013464          321 T--PKHRDVQTLCSMLTYKQGFPEILKGFPL-SPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSML  397 (442)
Q Consensus       321 t--~k~~dv~~ll~~l~~~~~~~~~~~~~~~-~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~  397 (442)
                      |  +|++|++++++|++|+..++....+... .+....|.+++++|++.+++++++..  +...++|+|++|++|+++|.
T Consensus       206 ~g~pr~lhv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~--~~~~~~~~il~v~~G~~~l~  283 (319)
T 1qwr_A          206 NGSPRELHFAKAVNAATVPHVDGYIDESTESRKGITIKTFVQGEYFSVYKWDINGEAE--MAQDESFLICSVIEGSGLLK  283 (319)
T ss_dssp             TSCBCCCCHHHHHHHSCSSCCCCCCCCEEEEETTEEEEEEEECSSCEEEEEEEEEEEE--ECCCSSCEEEEEEEEEEEEE
T ss_pred             CCCcccCCHHHHHhhccccCCCcccccceeecCCceEEEeCCCCEEEEEEEEECCceE--EccCCccEEEEEEcCeEEEE
Confidence            9  7778999999999998876543222112 23355676789999999999975433  33457899999999999998


Q ss_pred             eCCcEEEeCcccEEEEcCCCc-EEEEecCcEEEEEEEc
Q 013464          398 TASHNDAVAEGDVLFAPANTE-INITTSSKLQLYRAGV  434 (442)
Q Consensus       398 ~~~~~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~~  434 (442)
                      .+++.+.|++|+++||||+.+ +++++  ++++++++.
T Consensus       284 ~~~~~~~l~~G~~~~vpa~~~~~~i~g--~~~~~~~~~  319 (319)
T 1qwr_A          284 YEDKTCPLKKGDHFILPAQMPDFTIKG--TCTLIVSHI  319 (319)
T ss_dssp             ETTEEEEEETTCEEEECTTCCCEEEEE--EEEEEEEEC
T ss_pred             ECCEEEEEcCCcEEEEeCCCceEEEEe--ceEEEEEEC
Confidence            877789999999999999985 99975  689999873

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.90  E-value=2.3e-08  Score=94.61  Aligned_cols=141  Identities=18%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             eeECCCCCEEEecCCCceeeecC--cE-EEEeecC-Cce-----EEcCCCCCCCChhHhhccccccCCCccccccccCCC
Q 013464          281 YVKLNPGQALYLGANEPHAYISG--EC-IECMATS-DNV-----VRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSP  351 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~G--~~-vEim~~S-Dnt-----~R~glt~k~~dv~~ll~~l~~~~~~~~~~~~~~~~~  351 (442)
                      ...|++||.+|+|||++|++...  .. +||+-.- |..     +|.-.+++..++.+   .+.|....  .       .
T Consensus        76 ~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i~~~~~~~~~~~~~~~~l~~~~~~~~~d---~~~~~~g~--~-------~  143 (227)
T 3rns_A           76 KKTISNGDFLEITANHNYSIEARDNLKLIEIGEKIGDGNMENKTLKMLESASAFNLAE---VVEYQEGK--I-------V  143 (227)
T ss_dssp             EEEEETTEEEEECSSCCEEEEESSSEEEEEEEECC----------------CCEESGG---GSCCCTTC--E-------E
T ss_pred             EEEECCCCEEEECCCCCEEEEECCCcEEEEEEeecccchhhhhHhhcCCccccCcHHH---ccccCCCC--E-------E
Confidence            35799999999999999998543  22 5774431 111     11111111111111   11111100  0       0


Q ss_pred             cEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEE
Q 013464          352 YITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLY  430 (442)
Q Consensus       352 ~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~  430 (442)
                      ...++.  .+.|.+..+.+++|.....-......+++|++|++++..+++.+.+++||++++|++..-.+.+ .++++++
T Consensus       144 ~~~l~~--~~~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~l  221 (227)
T 3rns_A          144 SKNLVA--KPNLVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGKPFIVKKGESAVLPANIPHAVEAETENFKML  221 (227)
T ss_dssp             EEEEEE--ETTEEEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTEEEEEETTEEEEECTTSCEEEECCSSCEEEE
T ss_pred             EEEEEE--CCCeEEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCEEEEECCCCEEEECCCCcEEEEeCCCCEEEE
Confidence            123343  4679999999998876544445567899999999999999999999999999999999877777 7788887


Q ss_pred             EEEcC
Q 013464          431 RAGVN  435 (442)
Q Consensus       431 ~a~~~  435 (442)
                      ...+.
T Consensus       222 l~~v~  226 (227)
T 3rns_A          222 LILVK  226 (227)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            76653

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.43  E-value=4.5e-06  Score=79.44  Aligned_cols=78  Identities=14%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             CCceEEEEEEeCC-CCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPK-GTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~-~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      ...|.+....+.+ |.....-....-.+++|++|++++..+++.+.+++||++++|++..-.+.+  ++.+.++..+.|.
T Consensus       142 ~~~~~~~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~  221 (243)
T 3h7j_A          142 EDWVEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP  221 (243)
T ss_dssp             ETTEEEEEEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred             cceeEEEEEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence            3558888888887 654443345567899999999999999999999999999999998855654  4668888888776


Q ss_pred             C
Q 013464          437 R  437 (442)
Q Consensus       437 ~  437 (442)
                      +
T Consensus       222 ~  222 (243)
T 3h7j_A          222 R  222 (243)
T ss_dssp             S
T ss_pred             h
Confidence            5

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.20  E-value=5.2e-05  Score=73.37  Aligned_cols=143  Identities=14%  Similarity=0.089  Sum_probs=83.6

Q ss_pred             eeECCCCCEEEecCCCceeeec-CcE-EEEeecCCceEEcCCCCCCCChhHhhccccccCCCccccccccCC-Cc-EEEE
Q 013464          281 YVKLNPGQALYLGANEPHAYIS-GEC-IECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLS-PY-ITRY  356 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~-G~~-vEim~~SDnt~R~glt~k~~dv~~ll~~l~~~~~~~~~~~~~~~~-~~-~~~y  356 (442)
                      ...|++||++|+|+|++|+|-. |+- +.+.-    +.+........  ..-..+.+.+..++..   .+.. +. .+.+
T Consensus       103 ~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~----v~~~y~~~~g~--~p~~~v~~~~d~~~~~---~~~~~g~~~~~l  173 (274)
T 1sef_A          103 THELEAGGYAYFTPEMKMYLANAQEADTEVFL----YKKRYQPLAGH--QPYKVVGSIHDQQPEE---YEGMTDVLLWSL  173 (274)
T ss_dssp             EEEEETTEEEEECTTSCCEEEESSSSCEEEEE----EEEECCCCTTC--CCCCEEEEGGGSCCEE---GGGCTTEEEEEC
T ss_pred             EEEECCCCEEEECCCCCEEEEeCCCCCEEEEE----EEeeeeeCCCC--CCcceeCChHHCCccc---cCCCCCeEEEEe
Confidence            4579999999999999999863 322 22221    11111100000  0000111111111100   0111 11 1222


Q ss_pred             CC--CCCceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--c-CcEEEE
Q 013464          357 LP--PFDEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--S-SKLQLY  430 (442)
Q Consensus       357 ~~--p~~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~-~~~~~~  430 (442)
                      .+  ....|.+..+++.++..... -......+++|++|++++..+++.+.|++||+++||++..-.+.+  + ..++++
T Consensus       174 ~~~~~~~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l  253 (274)
T 1sef_A          174 LPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYV  253 (274)
T ss_dssp             SCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEECSSSCEEEE
T ss_pred             CCcccCCCEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEeCCCCCCEEEE
Confidence            22  23478999999988765433 234567899999999999999999999999999999999755554  3 445554


Q ss_pred             EE
Q 013464          431 RA  432 (442)
Q Consensus       431 ~a  432 (442)
                      ..
T Consensus       254 ~~  255 (274)
T 1sef_A          254 YS  255 (274)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.13  E-value=3.9e-05  Score=74.66  Aligned_cols=72  Identities=13%  Similarity=0.115  Sum_probs=56.8

Q ss_pred             CCceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR  431 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~  431 (442)
                      ..+|.+..+++.+|...... ...--..++|++|++++..+++...|++||+++++++..-.+.+  +++++.+.
T Consensus       188 ~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~  262 (278)
T 1sq4_A          188 RHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLL  262 (278)
T ss_dssp             TCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEEEEEETTCEEEEEESCCEEEECCSSSCEEEEE
T ss_pred             CCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEEcCCCCCEEEEE
Confidence            45799999999988765432 22335789999999999999999999999999999999877776  34454444

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.11  E-value=9e-05  Score=70.66  Aligned_cols=72  Identities=17%  Similarity=0.147  Sum_probs=56.6

Q ss_pred             CCceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR  431 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~  431 (442)
                      ...|.+..+++++|..... .....-..++|++|++++..+++.+.|++||+++++++..-.+.+  +++++.+.
T Consensus       162 ~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~  236 (246)
T 1sfn_A          162 AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLL  236 (246)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEEE
T ss_pred             CCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEEEEcCCCCEEEECCCCCEEEEcCCCCCEEEEE
Confidence            4578999999988765432 234556899999999999999999999999999999999876665  44554443

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.00  E-value=0.00017  Score=69.74  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=82.5

Q ss_pred             eeECCCCCEEEecCCCceeeecCcEEEEeecCCceEE------cCCCCCCC--ChhHhhccccccCCCccccccccCC--
Q 013464          281 YVKLNPGQALYLGANEPHAYISGECIECMATSDNVVR------AGLTPKHR--DVQTLCSMLTYKQGFPEILKGFPLS--  350 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt~R------~glt~k~~--dv~~ll~~l~~~~~~~~~~~~~~~~--  350 (442)
                      ...|++||++|+|||..|.+-...-..+     .++|      .|..|..+  ++++         .+     +.+..  
T Consensus       110 ~~~L~~Gds~y~p~~~~H~~~N~~~Ar~-----l~V~k~y~~~~g~~p~~~v~~~~d---------v~-----~~~~~g~  170 (266)
T 4e2q_A          110 SKKLTVDSYAYLPPNFHHSLDCVESATL-----VVFERRYEYLGSHTTELIVGSTDK---------QP-----LLETPGE  170 (266)
T ss_dssp             CEEECTTEEEEECTTCCCEEEESSCEEE-----EEEEEECCCCTTCCCCCEEEEGGG---------SC-----CBCCTTC
T ss_pred             EEEEcCCCEEEECCCCCEEEEeCCCEEE-----EEEEeEeeeCCCCCCceeeCcHhH---------CC-----CcccCCC
Confidence            4679999999999999999864211221     2233      13222221  1111         11     11111  


Q ss_pred             Cc-EEEECC--CCCceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEE--Eec
Q 013464          351 PY-ITRYLP--PFDEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINI--TTS  424 (442)
Q Consensus       351 ~~-~~~y~~--p~~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i--~~~  424 (442)
                      .. .+...+  ...+|.+.++++.+|...-+ ..+..-..++|++|+|.+..+++.+.+++||.+|+++++.-.+  .+.
T Consensus       171 ~~~~r~l~p~~~~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~~~~V~~GD~i~~~~~~~h~~~n~G~  250 (266)
T 4e2q_A          171 VFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGK  250 (266)
T ss_dssp             CSEEEESSCCSTTCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEESS
T ss_pred             cEEEEEccCcccccceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECCEEEEecCCCEEEECCCCcEEEEeCCC
Confidence            11 222222  14679999999988875432 2333458999999999999999999999999999999997444  445


Q ss_pred             CcEEEE
Q 013464          425 SKLQLY  430 (442)
Q Consensus       425 ~~~~~~  430 (442)
                      ++++.+
T Consensus       251 e~~~yl  256 (266)
T 4e2q_A          251 TRSRYL  256 (266)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            566543

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=97.99  E-value=6.9e-05  Score=71.91  Aligned_cols=72  Identities=13%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             CCceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--c-CcEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--S-SKLQLYR  431 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~-~~~~~~~  431 (442)
                      ...|.+.++++.++........ ....+++|++|++++..+++.+.|++||++++|++..-.+.+  + ++++++.
T Consensus       176 ~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~  251 (261)
T 1rc6_A          176 GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIY  251 (261)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEEEETTCEEEECSSEEEEEEEC----CEEEEE
T ss_pred             CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCcCEEEEE
Confidence            3468889999987754332222 356899999999999999999999999999999998755655  3 4455544

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=97.92  E-value=0.00013  Score=61.06  Aligned_cols=81  Identities=21%  Similarity=0.283  Sum_probs=64.9

Q ss_pred             EEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEE
Q 013464          354 TRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAG  433 (442)
Q Consensus       354 ~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~  433 (442)
                      .++.  .+.|.+.++.+++|.....-......+++|++|++++..+++++.|++||+++||++..-.+.+.++..++..+
T Consensus        29 ~l~~--~~~~~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~  106 (114)
T 3fjs_A           29 ALFK--EHRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTSLLVTV  106 (114)
T ss_dssp             EEEE--ETTEEEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEEESSSEEEEEEE
T ss_pred             EEEe--CCCEEEEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCEEEEECCCCEEEECCCCcEEEEeCCCcEEEEEE
Confidence            3454  46799999999888765443455679999999999999999999999999999999998777776677766666


Q ss_pred             cCC
Q 013464          434 VNS  436 (442)
Q Consensus       434 ~~~  436 (442)
                      +..
T Consensus       107 v~p  109 (114)
T 3fjs_A          107 VLV  109 (114)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            543

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=97.88  E-value=0.00016  Score=72.72  Aligned_cols=71  Identities=18%  Similarity=0.354  Sum_probs=51.5

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      ........+++|.....-......++.|++|+|+++-++++..+++||+++||++....+.+++++.++..
T Consensus       267 ti~~~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v~~~~~~~~~GD~~~vP~~~~H~~~n~e~~~l~~~  337 (354)
T 2d40_A          267 SMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVPTWHGVSFQTTQDSVLFSF  337 (354)
T ss_dssp             SCEEEEEEECTTCBCCCBEESSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             cceeEEEEECCCCCCCceecCCcEEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCeEEEEeCCCEEEEEE
Confidence            34455556766653222122344899999999999999999999999999999998877766555555544

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=97.88  E-value=0.00017  Score=59.53  Aligned_cols=78  Identities=17%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~  437 (442)
                      .+.|.+.++.+.++.....-..+...+++|++|++++..+++...+++||+++||++..-.+.+.++.+++..++..+
T Consensus        37 ~~~~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v~~~~~  114 (115)
T 1yhf_A           37 RQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLVVVKPE  114 (115)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEEEECSC
T ss_pred             CCceEEEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEEEEccC
Confidence            466999999998776544334567899999999999999999999999999999999987777756788888777654

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=97.86  E-value=0.00058  Score=68.17  Aligned_cols=77  Identities=16%  Similarity=0.118  Sum_probs=59.3

Q ss_pred             CceEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEe---CCc--EEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLT---ASH--NDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ..|.+.++.+.++.......+.. ..+++|++|++++..   +++  ...|++||++++|++....+.+  +++++++..
T Consensus       232 ~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~  311 (361)
T 2vqa_A          232 FNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVV  311 (361)
T ss_dssp             TTCEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             ccceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEE
Confidence            36899999998876543323344 789999999999986   666  8999999999999999866665  456777777


Q ss_pred             EcCCC
Q 013464          433 GVNSR  437 (442)
Q Consensus       433 ~~~~~  437 (442)
                      +.+..
T Consensus       312 ~~~~~  316 (361)
T 2vqa_A          312 FNDGD  316 (361)
T ss_dssp             ESSSS
T ss_pred             ECCCC
Confidence            76554

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=97.85  E-value=0.00033  Score=71.42  Aligned_cols=72  Identities=18%  Similarity=0.204  Sum_probs=54.5

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec---CcEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS---SKLQLYRA  432 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~---~~~~~~~a  432 (442)
                      ..+.+....+.+|.....-......+++|++|+|.+..+++++.+++||+++||++..-.+.+.   +++.++.+
T Consensus       292 ~tl~~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~ge~~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i  366 (394)
T 3bu7_A          292 LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSF  366 (394)
T ss_dssp             SSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEECCSSCCEEEEEE
T ss_pred             CeeeEEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECCEEEEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEe
Confidence            4677788888877653322234567999999999999999999999999999999998666653   34444443

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=97.82  E-value=0.00018  Score=58.57  Aligned_cols=78  Identities=15%  Similarity=0.237  Sum_probs=61.7

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCC-eEE-EEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSG-PSI-FLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~-~~i-l~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~  436 (442)
                      .+.|.+.++.+.++.....-.... ..+ ++|++|++++..+ ++...+++||+++||++..-.+.+.++.+++..+.|.
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~~~~p~  109 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMKVLVTIAPP  109 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEEEETTSCEEEEESSSEEEEEEEESC
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcEEEEEECCC
Confidence            577999999998776544333333 677 7999999999987 6899999999999999998777665677777777765


Q ss_pred             C
Q 013464          437 R  437 (442)
Q Consensus       437 ~  437 (442)
                      +
T Consensus       110 ~  110 (110)
T 2q30_A          110 I  110 (110)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.79  E-value=0.00014  Score=70.12  Aligned_cols=73  Identities=14%  Similarity=0.104  Sum_probs=51.1

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEEcC
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAGVN  435 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~~  435 (442)
                      .|....+-...|.+.. .....-..+-+++|+..|+-+++++.|+.||+++|||++.+++.. .+...+.++-.|
T Consensus       206 ~~eteV~l~G~Ges~~-~~~~~d~wiWqLEGss~Vt~~~q~~~L~~~DsLLIpa~~~y~~~r~~gsv~L~I~~~p  279 (286)
T 2qnk_A          206 TYETQVIAYGQGSSEG-LRQNVDVWLWQLEGSSVVTMGGRRLSLAPDDSLLVLAGTSYAWERTQGSVALSVTQDP  279 (286)
T ss_dssp             TSSEEEEEECSEEEEE-CCCSSCEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEEECTTCEEEEEEECG
T ss_pred             CCceEEEEEcCCcccc-ccCcCcEEEEEEcCceEEEECCeEEeccCCCEEEecCCCeEEEEecCCeEEEEEEECc
Confidence            3444444355554433 223345677899999999999999999999999999999999876 344444444433

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=97.79  E-value=0.00028  Score=58.34  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~  437 (442)
                      +.|.+.++++.++.....-......+++|++|++++..+++...+++||+++||++..-.+.+.++..++..+.|.+
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~v~~p~~  108 (116)
T 2pfw_A           32 HELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGILIDTFSPAR  108 (116)
T ss_dssp             TTEEEEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEEESSCEEEEEEEESCC
T ss_pred             CceEEEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCEEEEeCCCCEEEECcCCceeeEeCCCcEEEEEECCch
Confidence            56999999998775443334567899999999999999999999999999999999987777656788888777664

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=97.76  E-value=0.00049  Score=56.06  Aligned_cols=79  Identities=14%  Similarity=0.248  Sum_probs=62.4

Q ss_pred             CCceEEEEEEeCCCCeeecc--CCC-CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEc
Q 013464          360 FDEFEVDCCILPKGTSSVFP--AVS-GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGV  434 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~--~~~-~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~  434 (442)
                      .+.|.+.++.+.++......  ... ...+++|++|++++..+++...+++||+++||++..-.+.+  +.++.++..+.
T Consensus        18 ~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~   97 (113)
T 2gu9_A           18 LRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYH   97 (113)
T ss_dssp             ETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             CCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEEC
Confidence            35689999999877654332  344 68999999999999999999999999999999999866665  44677777766


Q ss_pred             CCCc
Q 013464          435 NSRF  438 (442)
Q Consensus       435 ~~~~  438 (442)
                      +..+
T Consensus        98 ~~~~  101 (113)
T 2gu9_A           98 PPAY  101 (113)
T ss_dssp             SCCB
T ss_pred             CCCc
Confidence            6543

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=97.73  E-value=0.00061  Score=68.74  Aligned_cols=77  Identities=10%  Similarity=0.074  Sum_probs=59.5

Q ss_pred             CceEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEeC-----CcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLTA-----SHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~~-----~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ..|.+..+++.+|.......+.. ..+++|++|++++..+     ++++.|++||++++|++....+.+  ++++.++..
T Consensus       255 ~~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v  334 (385)
T 1j58_A          255 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEI  334 (385)
T ss_dssp             CSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEE
T ss_pred             cceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEE
Confidence            36999999998876543333445 7899999999998755     568999999999999999866655  456777777


Q ss_pred             EcCCC
Q 013464          433 GVNSR  437 (442)
Q Consensus       433 ~~~~~  437 (442)
                      +.+..
T Consensus       335 ~~~~~  339 (385)
T 1j58_A          335 FKDDH  339 (385)
T ss_dssp             ESSSS
T ss_pred             ECCCC
Confidence            66544

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=97.71  E-value=0.00057  Score=54.59  Aligned_cols=77  Identities=18%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      .+.|.+..+.+.++.....-.... ..+++|++|++++..+++...+++||++++|++..-.+.+  +.++.++..+.|.
T Consensus        25 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p~  104 (105)
T 1v70_A           25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPR  104 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEESC
T ss_pred             CCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCCC
Confidence            466999999998776544333343 5699999999999999999999999999999999866665  3467777776664

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=97.70  E-value=0.00038  Score=58.46  Aligned_cols=78  Identities=8%  Similarity=-0.004  Sum_probs=64.0

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCc-EEEEEEEcCCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSK-LQLYRAGVNSR  437 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~-~~~~~a~~~~~  437 (442)
                      .+.|.+.++.+.++.....-.+....+++|++|++++..+++...+++||+++||++..-.+.+.++ ..++..+.|.+
T Consensus        38 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~~p~~  116 (126)
T 4e2g_A           38 GKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEETRVLRPGMAYTIPGGVRHRARTFEDGCLVLDIFSPPR  116 (126)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEEEEECTTEEEEECTTCCEEEECCTTCEEEEEEEESCC
T ss_pred             CCCeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEEEEeCCCCEEEECCCCcEEeEECCCCEEEEEEECCCC
Confidence            4679999999988865544445678999999999999999999999999999999999866766444 78887877754

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=97.67  E-value=0.00048  Score=69.55  Aligned_cols=73  Identities=18%  Similarity=0.413  Sum_probs=57.0

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      .+-..+....+.+|.........+-.|+.|++|+|++.-+++++.+++||+|+||+....++.+++++.+|.+
T Consensus       276 ~pti~~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~Lf~~  348 (368)
T 3nw4_A          276 MPTLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQAETQFDLFRF  348 (368)
T ss_dssp             SSSCEEEEEEECTTCBCCCEEESSCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEESSSEEEEEE
T ss_pred             chhHHhheEEECCCCccCCeeccccEEEEEEeCcEEEEECCEEEEecCCCEEEECCCCcEEEEeCCCEEEEEE
Confidence            3556666677777754332223456899999999999999999999999999999999988888767666654

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=97.66  E-value=0.00036  Score=59.15  Aligned_cols=77  Identities=12%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             CCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec-CcEEEEEEEcCC
Q 013464          359 PFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS-SKLQLYRAGVNS  436 (442)
Q Consensus       359 p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~-~~~~~~~a~~~~  436 (442)
                      +...+++..+++.+|....... ..-.+++|++|++++..+++.+.|++||+++||++...++++. ...+++.+..|.
T Consensus        36 ~~~~~~~~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~~g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~~l~v~~P~  113 (119)
T 3lwc_A           36 HGGPITIGYGRYAPGQSLTETM-AVDDVMIVLEGRLSVSTDGETVTAGPGEIVYMPKGETVTIRSHEEGALTAYVTYPH  113 (119)
T ss_dssp             --CCCEEEEEEECTTCEEEEEC-SSEEEEEEEEEEEEEEETTEEEEECTTCEEEECTTCEEEEEEEEEEEEEEEEEECC
T ss_pred             CCCCEEEEEEEECCCCCcCccC-CCCEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCEEEEEcCCCCeEEEEEECCC
Confidence            4567888899998886554333 6789999999999999999999999999999999998666653 456666555554

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.60  E-value=0.00089  Score=63.65  Aligned_cols=142  Identities=12%  Similarity=0.120  Sum_probs=80.6

Q ss_pred             eeeECCCCCEEEecCCCceeeecC-cE-EEEeecCCceEEcCCCCCCCChhHhhccccccCC-C--cc-ccccccCCCcE
Q 013464          280 NYVKLNPGQALYLGANEPHAYISG-EC-IECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQG-F--PE-ILKGFPLSPYI  353 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~G-~~-vEim~~SDnt~R~glt~k~~dv~~ll~~l~~~~~-~--~~-~~~~~~~~~~~  353 (442)
                      ..+.++|||.++||.|+-|..-.- .+ .=.|..-.    +.-..+.. +..+..-..+++. .  ++ .+...|.....
T Consensus        83 ~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~~~----~~~p~~~~-~~~i~~~~~l~P~~~p~p~~~l~G~P~~~~~  157 (238)
T 3myx_A           83 DSVTLSTGESAVIGRGTQVRIDAQPESLWAFCASTQ----ASGPDKSG-ITALDRLALLTPSSPPDPSIMISPLPQCRSN  157 (238)
T ss_dssp             EEEEEETTCEEEECTTCCEEEEECTTEEEEEEEECS----CCSCCCCS-EEEECTTCCCEEECCCCGGGBSSCCCCEEEE
T ss_pred             eEEEEcCCCEEEECCCCEEEEEecCCeEEEEEeccC----CCCCCCCc-cEEecCCCCCCCCCCCChhheecCCchheee
Confidence            457799999999999999886422 22 11111110    01111111 1111111122221 1  11 11111211123


Q ss_pred             EEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe-CCcEEEeCcccEEEEcCCCcEEEEecCcE
Q 013464          354 TRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT-ASHNDAVAEGDVLFAPANTEINITTSSKL  427 (442)
Q Consensus       354 ~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~  427 (442)
                      ..|..+...|..-.++...|..... ..+.-.++.+|+|+++|+. +|+...++.||++++|++...+.+..+.+
T Consensus       158 ~~~~~~~g~~~~GiW~~tpG~~~~~-~~~~~E~~~ILeG~v~lt~~~G~~~~~~aGD~~~~P~G~~~tWev~e~v  231 (238)
T 3myx_A          158 NLFEDTASTLRIGVWDSTPYERISR-PHKIHELMNLIEGRVVLSLENGSSLTVNTGDTVFVAQGAPCKWTSTGYV  231 (238)
T ss_dssp             EEEECSSSSCEEEEEEECCEEBCCE-ECSSCEEEEEEECCEEEEETTSCEEEECTTCEEEECTTCEEEEEESSCE
T ss_pred             EEEECCCCCEEEeEEEeCCCEEECC-cCCCCEEEEEEEeEEEEEeCCCCEEEECCCCEEEECCCCEEEEEECccE
Confidence            4565556678888888776542221 1234578889999999987 46689999999999999998877664443

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=97.57  E-value=0.0024  Score=62.64  Aligned_cols=55  Identities=24%  Similarity=0.259  Sum_probs=46.2

Q ss_pred             CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecC-cEEEEEEEcCCC
Q 013464          383 GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSS-KLQLYRAGVNSR  437 (442)
Q Consensus       383 ~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~-~~~~~~a~~~~~  437 (442)
                      +..+++|++|++++..+++.+.|++||+++||++....+.+.+ .++++..+.+..
T Consensus       239 ~~e~~~vl~G~~~~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~l~v~~~~~  294 (337)
T 1y3t_A          239 HTETFYCLEGQMTMWTDGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPGL  294 (337)
T ss_dssp             CEEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEECSSSEEEEEEEESST
T ss_pred             CcEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCeEEEEECCCCeEEEEEEcCcc
Confidence            5889999999999999999999999999999999987676632 577777765553

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=97.46  E-value=0.00093  Score=55.66  Aligned_cols=64  Identities=14%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             CCceEEEEEEeCCCCeee--ccCCCCeEEEEEEcCcEEEEeCCcE--EEeCcccEEEEcCCCcEEEEe
Q 013464          360 FDEFEVDCCILPKGTSSV--FPAVSGPSIFLVTDGEGSMLTASHN--DAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~--~~~~~~~~il~v~~G~~~i~~~~~~--~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      .+.|.+.++..++.....  ....++..+++|++|++++..+++.  +.|++||+++||++..-++.+
T Consensus        28 ~~~~~i~~i~~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ipa~~~H~~~n   95 (112)
T 2opk_A           28 RKGLKIERIISNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVPAHCRHRVAW   95 (112)
T ss_dssp             ETTEEEEEEEESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTCSSCEEECTTEEEEECTTCCEEEEE
T ss_pred             CCCEEEEEEEeCCccCCCCccccCCccEEEEEEeCeEEEEECCEEEEEEECCCCEEEECCCCcEEEEe
Confidence            577999999755322111  0234678999999999999999888  999999999999999865654

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=97.43  E-value=0.0013  Score=55.09  Aligned_cols=78  Identities=10%  Similarity=0.048  Sum_probs=60.1

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEe-CCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLT-ASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVN  435 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~-~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~  435 (442)
                      .+.+.+.++.+.+|.....-.+.. ..+++|++|++++.. +++...+++||++++|++..-.+.+  +.++.++..+.|
T Consensus        36 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p  115 (125)
T 3h8u_A           36 TNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAP  115 (125)
T ss_dssp             CSSCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEES
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECC
Confidence            456889999998876554333443 678889999999998 8899999999999999998755554  456777777766


Q ss_pred             CC
Q 013464          436 SR  437 (442)
Q Consensus       436 ~~  437 (442)
                      .+
T Consensus       116 ~~  117 (125)
T 3h8u_A          116 GN  117 (125)
T ss_dssp             TT
T ss_pred             Cc
Confidence            53

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=97.42  E-value=0.001  Score=54.85  Aligned_cols=74  Identities=18%  Similarity=0.323  Sum_probs=54.6

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEc
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGV  434 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~  434 (442)
                      +.+.+..+.++++.....-......+++|++|++++..+++.+.|++||+++||++..-.+.+.++..++...+
T Consensus        36 ~~~~~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~i~~  109 (114)
T 2ozj_A           36 DRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQITL  109 (114)
T ss_dssp             SSEEEEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEETTEEEEECTTCEEEECTTCCBEEEEEEEEEEEEEEE
T ss_pred             CCceEEEEEECCCCccccEECCCCeEEEEEeCEEEEEECCEEEEecCCCEEEECCCCcEEEEeCCCcEEEEEEE
Confidence            45666666666654332223456889999999999999999999999999999999986565544555555444

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=97.39  E-value=0.00076  Score=55.95  Aligned_cols=78  Identities=15%  Similarity=0.324  Sum_probs=59.3

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEE-EeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHND-AVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~-~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      .+.|.+..+.+.++.....-..+...+++|++|++++..+++.. .+++||+++||++..-.+.+  +.++.++....+.
T Consensus        24 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~  103 (117)
T 2b8m_A           24 TEHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPH  103 (117)
T ss_dssp             CSSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSC
T ss_pred             CCceEEEEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence            46788988888776543222345788999999999999988888 99999999999999866665  3345666665554


Q ss_pred             C
Q 013464          437 R  437 (442)
Q Consensus       437 ~  437 (442)
                      +
T Consensus       104 ~  104 (117)
T 2b8m_A          104 P  104 (117)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=97.36  E-value=0.0028  Score=56.70  Aligned_cols=76  Identities=11%  Similarity=0.162  Sum_probs=60.1

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe---cCcEEEEEEEcCC
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT---SSKLQLYRAGVNS  436 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~---~~~~~~~~a~~~~  436 (442)
                      ..|.+..+++.++.....-......+++|++|++++..+++.+.+++||+++||++..-.+.+   +.++.++....+.
T Consensus        54 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~  132 (167)
T 3ibm_A           54 PAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD  132 (167)
T ss_dssp             SSEEEEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred             CcEEEEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence            589999999987754433335678999999999999999999999999999999999855544   3466666665544

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=97.35  E-value=0.00091  Score=56.22  Aligned_cols=78  Identities=18%  Similarity=0.330  Sum_probs=61.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCCCc
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNSRF  438 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~~~  438 (442)
                      ..|.+...++.++.....-..+...+++|++|++++..+++.+.+++||+++||++..-.+.+  +.+++++..+.+.++
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i~f~~~~  111 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIWWDKES  111 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEEECHHH
T ss_pred             CCcEEEEEEECCCCccCCEecCCeEEEEEEeCEEEEEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEEEECHHH
Confidence            458888888877654333335679999999999999999999999999999999998755554  456777777766554

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=97.34  E-value=0.00082  Score=58.08  Aligned_cols=81  Identities=14%  Similarity=0.166  Sum_probs=61.7

Q ss_pred             ECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcC
Q 013464          356 YLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVN  435 (442)
Q Consensus       356 y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~  435 (442)
                      +.++...|.+..+++.++ .... ....-.+++|++|++++..+++.+.|++||++++|++...++++.+.++++.+..|
T Consensus        50 ~~~~~~~~~~~~~~~~pG-~~~~-h~~~~E~~~VLeG~~~l~~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v~~p  127 (133)
T 2pyt_A           50 TEQDGSSMAAGFMQWDNA-FFPW-TLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAWP  127 (133)
T ss_dssp             CGGGTCSSEEEEEEEEEE-EEEE-ECSSEEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEES
T ss_pred             ecCCCCcEEEEEEEECCC-Cccc-cCCCCEEEEEEECEEEEEECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEEEcC
Confidence            444444677777777766 3332 23567899999999999999999999999999999999866766566777766666


Q ss_pred             CCc
Q 013464          436 SRF  438 (442)
Q Consensus       436 ~~~  438 (442)
                      ..|
T Consensus       128 ~~~  130 (133)
T 2pyt_A          128 ANW  130 (133)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            654

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=97.32  E-value=0.0017  Score=57.63  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             EECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          355 RYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       355 ~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ++..+...|.+..+++.++.....-......+++|++|++++..+++.+.+++||+++||++..-.+.+  +.++.++..
T Consensus        36 L~~~~~~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i  115 (156)
T 3kgz_A           36 LFADPNLACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCV  115 (156)
T ss_dssp             EECCTTCSEEEEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             EEcCCCCcEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            444445779999988876644333334567899999999999999999999999999999999866665  455666655


Q ss_pred             EcCC
Q 013464          433 GVNS  436 (442)
Q Consensus       433 ~~~~  436 (442)
                      ..+.
T Consensus       116 ~~~~  119 (156)
T 3kgz_A          116 VNAA  119 (156)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            5433

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=97.30  E-value=0.0011  Score=56.08  Aligned_cols=77  Identities=14%  Similarity=0.118  Sum_probs=60.5

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      ...|.+..+++.++.....-..+...+++|++|++++..+++.+.+++||++++|++..-.+.+  ++++.++..+.+.
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~v~~~~  123 (126)
T 1vj2_A           45 APNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKE  123 (126)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCEEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEEGG
T ss_pred             CCCEEEEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEccC
Confidence            4578999998876654433345678999999999999999999999999999999999866665  3467777666654

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=97.28  E-value=0.0022  Score=57.43  Aligned_cols=81  Identities=14%  Similarity=0.048  Sum_probs=61.1

Q ss_pred             EECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          355 RYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       355 ~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ++..+...|.+..+++.+|.....-......+++|++|++++..+++.+.+++||+++||++..-.+.+  +.++.++..
T Consensus        45 L~~~~~~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i  124 (166)
T 3jzv_A           45 LFSGNGLTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRAVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCM  124 (166)
T ss_dssp             EECCTTCSEEEEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEECCTTSCEEEEEE
T ss_pred             EECCCCCeEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            344445779999988876654333334567899999999999999999999999999999999866665  445666655


Q ss_pred             EcC
Q 013464          433 GVN  435 (442)
Q Consensus       433 ~~~  435 (442)
                      ..+
T Consensus       125 ~~~  127 (166)
T 3jzv_A          125 VNA  127 (166)
T ss_dssp             EES
T ss_pred             Ecc
Confidence            544

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=97.27  E-value=0.002  Score=56.80  Aligned_cols=78  Identities=14%  Similarity=0.234  Sum_probs=61.3

Q ss_pred             CCceEEEEEEeCCCCe-eeccCC-CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCC-CcEEEEe--cCcEEEEEEEc
Q 013464          360 FDEFEVDCCILPKGTS-SVFPAV-SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPAN-TEINITT--SSKLQLYRAGV  434 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~-~~~~~~-~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~-~~~~i~~--~~~~~~~~a~~  434 (442)
                      ...|.+..+++.++.. ...-.+ ....+++|++|++++..+++.+.+++||+++||++ ..-.+.+  +.++.++....
T Consensus        43 ~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~  122 (162)
T 3l2h_A           43 LRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQ  122 (162)
T ss_dssp             CCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEE
T ss_pred             CCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEEC
Confidence            5679999999987753 222222 46899999999999999999999999999999998 7766665  45677777766


Q ss_pred             CCC
Q 013464          435 NSR  437 (442)
Q Consensus       435 ~~~  437 (442)
                      +.+
T Consensus       123 p~~  125 (162)
T 3l2h_A          123 RLD  125 (162)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            655

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=97.22  E-value=0.0023  Score=55.61  Aligned_cols=79  Identities=18%  Similarity=0.242  Sum_probs=60.2

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEeCCcE------EEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLTASHN------DAVAEGDVLFAPANTEINITT--SSKLQLY  430 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~~~~~------~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~  430 (442)
                      ...|.+..+.+.++.....-.... -.+++|++|++++..+++.      ..|++||+++||++..-.+.+  +..+.++
T Consensus        40 ~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l  119 (148)
T 2oa2_A           40 GDHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLY  119 (148)
T ss_dssp             CSSCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEE
T ss_pred             CCceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEE
Confidence            466899999998775433222333 4899999999999887777      999999999999999855654  4567777


Q ss_pred             EEEcCCCc
Q 013464          431 RAGVNSRF  438 (442)
Q Consensus       431 ~a~~~~~~  438 (442)
                      ..+.+..+
T Consensus       120 ~i~~~~~~  127 (148)
T 2oa2_A          120 SIYAPPQH  127 (148)
T ss_dssp             EEEESCCS
T ss_pred             EEECCCCC
Confidence            77776653

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=97.20  E-value=0.0036  Score=64.25  Aligned_cols=74  Identities=16%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             eEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe---CC--------------cEE--EeCcccEEEEcCCCcEEEE
Q 013464          363 FEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT---AS--------------HND--AVAEGDVLFAPANTEINIT  422 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~---~~--------------~~~--~l~~G~~~~Ipa~~~~~i~  422 (442)
                      .++.++.+.++..... .......|++|++|++.+..   ++              ..+  .|++||+++||++....+.
T Consensus       249 is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~  328 (416)
T 1uij_A          249 IFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVN  328 (416)
T ss_dssp             EEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEEECTTCCEEEE
T ss_pred             cceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEE
Confidence            6788888887743211 11346899999999998852   22              245  8999999999999985555


Q ss_pred             ecCcEEEEEEEcCC
Q 013464          423 TSSKLQLYRAGVNS  436 (442)
Q Consensus       423 ~~~~~~~~~a~~~~  436 (442)
                      +.+++.++..+..+
T Consensus       329 n~~~~~~l~f~~~~  342 (416)
T 1uij_A          329 ATSNLNFLAFGINA  342 (416)
T ss_dssp             ESSSEEEEEEEETC
T ss_pred             cCCCeEEEEEEcCC
Confidence            65677776655443

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.003  Score=56.79  Aligned_cols=81  Identities=15%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             EECCCCCceEEEEEEeCC-CCe-eeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464          355 RYLPPFDEFEVDCCILPK-GTS-SVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLY  430 (442)
Q Consensus       355 ~y~~p~~~F~l~~i~~~~-~~~-~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~  430 (442)
                      .+......|....+++++ +.. -......+-.+++|++|+++++.+++.+.|++||++++|++...++++  +..++++
T Consensus        80 ~fs~~~~~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll  159 (166)
T 2vpv_A           80 MFDKHKEYFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMF  159 (166)
T ss_dssp             ECCTTTCSCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTEEEEEETTCEEEECTTCEEEEEECSSSCEEEE
T ss_pred             eecCCcccceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCEEEEEcCCCEEEECCCCCEEEEECCCCCEEEE
Confidence            454434578888888877 532 111345678899999999999999999999999999999999988887  4456777


Q ss_pred             EEEcC
Q 013464          431 RAGVN  435 (442)
Q Consensus       431 ~a~~~  435 (442)
                      .+.+.
T Consensus       160 ~Vq~~  164 (166)
T 2vpv_A          160 FVQVT  164 (166)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66543

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=97.17  E-value=0.002  Score=51.82  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCe-EEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGP-SIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~-~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ...|.+.++++.++.....-..... .+++|++|++++..++  +...+++||++++|++..-.+.+  +.++.++..
T Consensus        15 ~~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           15 NERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SSSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             CCeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            4679999999987754332234454 4999999999999877  78999999999999999866665  335555543

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=97.16  E-value=0.0032  Score=58.92  Aligned_cols=77  Identities=19%  Similarity=0.301  Sum_probs=63.8

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~  436 (442)
                      .+...+..+.+++|.........+-.+++|++|++++..++++..+++||++++|++..-.+.+.+++.++....+.
T Consensus        34 ~~~~~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i~~~~  110 (227)
T 3rns_A           34 QPNSYISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKI  110 (227)
T ss_dssp             CSSEEEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEEEECC
T ss_pred             CCCcEEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEEEeec
Confidence            35789999999988766544556789999999999999999999999999999999998777776677777665543

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=97.16  E-value=0.0026  Score=53.37  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             CCceEEEEEEeCCCCeee-ccCCCCeEEEE-EEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcC
Q 013464          360 FDEFEVDCCILPKGTSSV-FPAVSGPSIFL-VTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVN  435 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~-~~~~~~~~il~-v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~  435 (442)
                      .+.+.+..+.+.++.... .-..+...+++ |++|++++..+++.+.+++||+++||++..-.+.+  +.++.++..+.+
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i~~~  102 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEKIELQAGDWLRIAPDGKRQISAASDSPIGFLCIQVK  102 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEEEEEETTEEEEECTTCCEEEEEBTTBCEEEEEEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence            456777778887665332 11234565555 99999999999999999999999999999755554  345777777776


Q ss_pred             CCcc
Q 013464          436 SRFL  439 (442)
Q Consensus       436 ~~~~  439 (442)
                      ..++
T Consensus       103 ~~~~  106 (125)
T 3cew_A          103 AGSL  106 (125)
T ss_dssp             TTCC
T ss_pred             Cccc
Confidence            6654

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=97.11  E-value=0.0037  Score=55.09  Aligned_cols=78  Identities=21%  Similarity=0.235  Sum_probs=59.6

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCC---------cEEEeCcccEEEEcCCCcEEEEec---CcE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTAS---------HNDAVAEGDVLFAPANTEINITTS---SKL  427 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~---------~~~~l~~G~~~~Ipa~~~~~i~~~---~~~  427 (442)
                      ...|.+.++.+..+.....-.+....+++|++|++++..++         +.+.+++||+++||++..-.+.+.   .++
T Consensus        38 ~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~  117 (163)
T 1lr5_A           38 MKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDL  117 (163)
T ss_dssp             CSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCE
T ss_pred             CCcEEEEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCE
Confidence            45799999999876543222345678999999999999887         899999999999999998666653   367


Q ss_pred             EEEEEEcCCC
Q 013464          428 QLYRAGVNSR  437 (442)
Q Consensus       428 ~~~~a~~~~~  437 (442)
                      .++....+.+
T Consensus       118 ~~l~i~~~~~  127 (163)
T 1lr5_A          118 QVLVIISRPP  127 (163)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEECCCC
Confidence            7776665543

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=97.09  E-value=0.0027  Score=56.16  Aligned_cols=73  Identities=12%  Similarity=0.223  Sum_probs=54.5

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS  436 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~  436 (442)
                      .+++-.+++. +...... .+.-.+.+|++|++++..+++.+.+++||+++||++...++.+.+.++++.+..|.
T Consensus        65 ~~s~g~~~~e-~~~~~~~-~~~eE~~yVLeG~~~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V~~P~  137 (151)
T 4axo_A           65 RLGCGMMEMK-ETTFDWT-LNYDEIDYVIDGTLDIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYVTYPA  137 (151)
T ss_dssp             SCEEEEEEEE-EEEEEEE-CSSEEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECS
T ss_pred             cEEEEEEEEc-CccccEe-CCCcEEEEEEEeEEEEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEEECCC
Confidence            5666666665 3333332 35568899999999999999999999999999999998777764456666555554

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=97.05  E-value=0.0039  Score=55.41  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             CCCceEEEEEEeCCCCeee-ccCCCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCC--CcEEEEe--cCcEEEEEE
Q 013464          359 PFDEFEVDCCILPKGTSSV-FPAVSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPAN--TEINITT--SSKLQLYRA  432 (442)
Q Consensus       359 p~~~F~l~~i~~~~~~~~~-~~~~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~--~~~~i~~--~~~~~~~~a  432 (442)
                      ....|.+..+++..+.... .-.+.. -.+++|++|++++..+++++.|++||+++||++  ..-.+.+  +..++++..
T Consensus        39 ~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v  118 (163)
T 3i7d_A           39 GLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVV  118 (163)
T ss_dssp             TCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEE
T ss_pred             CCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEE
Confidence            3567999999998775321 111234 489999999999999999999999999999999  7766665  456777777


Q ss_pred             EcCCC
Q 013464          433 GVNSR  437 (442)
Q Consensus       433 ~~~~~  437 (442)
                      +.+.+
T Consensus       119 ~~p~~  123 (163)
T 3i7d_A          119 GTRTP  123 (163)
T ss_dssp             EECCS
T ss_pred             ECCCC
Confidence            76655

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=96.98  E-value=0.0062  Score=62.08  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=54.1

Q ss_pred             CceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeC---------Cc---EEEeCcccEEEEcCCCcEEEEecCcE
Q 013464          361 DEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTA---------SH---NDAVAEGDVLFAPANTEINITTSSKL  427 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~---------~~---~~~l~~G~~~~Ipa~~~~~i~~~~~~  427 (442)
                      -..++.++.+.+|..... .......|++|++|++.+..-         +.   +..|++||+++||++....+.+.+++
T Consensus       237 l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vvP~G~~h~~~n~~~l  316 (397)
T 2phl_A          237 LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNV  316 (397)
T ss_dssp             TTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSE
T ss_pred             CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEECCCCeEEEEeCCCe
Confidence            568888889887743221 113468999999999988532         21   57799999999999998666665677


Q ss_pred             EEEEEEcCC
Q 013464          428 QLYRAGVNS  436 (442)
Q Consensus       428 ~~~~a~~~~  436 (442)
                      .++..+..+
T Consensus       317 ~~l~f~~~s  325 (397)
T 2phl_A          317 NFTGFGINA  325 (397)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEECCC
Confidence            776544443

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=96.93  E-value=0.0072  Score=51.51  Aligned_cols=72  Identities=19%  Similarity=0.283  Sum_probs=55.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCC-CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVS-GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ..+.+.++++.++.....-... ...+++|++|++++..+++.+.|++||++++|++..-.+.+  +.++.++..
T Consensus        55 ~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v  129 (133)
T 1o4t_A           55 KARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  129 (133)
T ss_dssp             SEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             ceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEECCEEEEeCCCcEEEECCCCcEEeEECCCCCEEEEEE
Confidence            3467778888877654332344 47899999999999999999999999999999998866665  345555544

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=96.93  E-value=0.0084  Score=61.84  Aligned_cols=74  Identities=19%  Similarity=0.329  Sum_probs=51.7

Q ss_pred             eEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeC---C----------c---EE--EeCcccEEEEcCCCcEEEEe
Q 013464          363 FEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTA---S----------H---ND--AVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~---~----------~---~~--~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      .++.++.+.+|..... .......|++|++|++.+..-   +          .   .+  .|++||+++||++....+.+
T Consensus       266 is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n  345 (434)
T 2ea7_A          266 VFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINA  345 (434)
T ss_dssp             EEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEE
T ss_pred             cceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEc
Confidence            6788899887743221 112468999999999988521   1          1   44  79999999999999855556


Q ss_pred             cCcEEEEEEEcCC
Q 013464          424 SSKLQLYRAGVNS  436 (442)
Q Consensus       424 ~~~~~~~~a~~~~  436 (442)
                      .+++.++..+.++
T Consensus       346 ~~~~~~v~f~~~~  358 (434)
T 2ea7_A          346 TSNLNFFAFGINA  358 (434)
T ss_dssp             SSSEEEEEEEETC
T ss_pred             CCCeEEEEEECCC
Confidence            5677766555444

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=96.91  E-value=0.01  Score=53.54  Aligned_cols=75  Identities=8%  Similarity=-0.014  Sum_probs=56.7

Q ss_pred             CCceEEEEEEeCCCCeee--ccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcC
Q 013464          360 FDEFEVDCCILPKGTSSV--FPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVN  435 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~--~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~  435 (442)
                      ...|.+..+.+.++....  .-......+++|++|++++..+++.+.|++||++++|++..-.+.+  ++.+ ++....+
T Consensus       101 ~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~  179 (192)
T 1y9q_A          101 DTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAY  179 (192)
T ss_dssp             TTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEEC
T ss_pred             CCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEec
Confidence            466888888888775433  1123457999999999999999999999999999999999866665  3445 4444444

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=96.91  E-value=0.0031  Score=53.85  Aligned_cols=75  Identities=13%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEE--eCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEc
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSML--TASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGV  434 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~--~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~  434 (442)
                      ...|.+..+++.++.....-.+....+++|++|++++.  .+++...+++||+++||++..-.+.+  +..+.++....
T Consensus        36 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~  114 (145)
T 3ht1_A           36 ADRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAP  114 (145)
T ss_dssp             CCSEEEEEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEE
T ss_pred             CCcEEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEEC
Confidence            45899999988766433222345678889999999999  88999999999999999999866655  44566655543

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=96.86  E-value=0.0059  Score=53.16  Aligned_cols=75  Identities=19%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcE-EEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcC
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHN-DAVAEGDVLFAPANTEINITT--SSKLQLYRAGVN  435 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~-~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~  435 (442)
                      ..|.+.++.+.++.....-......+++|++|++++..+++. ..+++||+++||++..-.+.+  +..+.++....+
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~  123 (147)
T 2f4p_A           46 FNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ  123 (147)
T ss_dssp             SSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred             CcEEEEEEEECCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence            579999999987765433334568999999999999998887 999999999999999855554  445666665554

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=96.74  E-value=0.0024  Score=51.96  Aligned_cols=77  Identities=14%  Similarity=0.184  Sum_probs=55.8

Q ss_pred             EEECCCCCceEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEeCCc---EEEeCcccEEEEcCCCcEEEEe--cCcE
Q 013464          354 TRYLPPFDEFEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLTASH---NDAVAEGDVLFAPANTEINITT--SSKL  427 (442)
Q Consensus       354 ~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~~~~---~~~l~~G~~~~Ipa~~~~~i~~--~~~~  427 (442)
                      .+..  .+.|.+.|+.+++|....+-.+.. ..++++++|.+++..++.   ...++.|++++||++..-++.+  +.++
T Consensus        10 V~ie--n~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl   87 (98)
T 3lag_A           10 IQID--NDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEI   87 (98)
T ss_dssp             EEEE--SSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCE
T ss_pred             EEEc--CCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcCCCcEECEECCCCeE
Confidence            3454  578999999999987654433333 457778899999987653   4568999999999999877776  4556


Q ss_pred             EEEEE
Q 013464          428 QLYRA  432 (442)
Q Consensus       428 ~~~~a  432 (442)
                      .++..
T Consensus        88 ~~IeV   92 (98)
T 3lag_A           88 VFLEI   92 (98)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65554

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=96.73  E-value=0.0073  Score=60.40  Aligned_cols=71  Identities=14%  Similarity=0.246  Sum_probs=53.8

Q ss_pred             ceEEEEEEeCCC---CeeeccCCCCeEEEEEEcCcEEEEeCC-cEEEeCcccEEEEcCCCcEEEEecCc-EEEEEE
Q 013464          362 EFEVDCCILPKG---TSSVFPAVSGPSIFLVTDGEGSMLTAS-HNDAVAEGDVLFAPANTEINITTSSK-LQLYRA  432 (442)
Q Consensus       362 ~F~l~~i~~~~~---~~~~~~~~~~~~il~v~~G~~~i~~~~-~~~~l~~G~~~~Ipa~~~~~i~~~~~-~~~~~a  432 (442)
                      .|.+.++++..+   .....-..+.-.+++|++|+++|+.++ +.+.|+.||+++|||+....+.+.++ ..++..
T Consensus       248 ~f~~~~i~~~~~~~g~~~~~h~~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~~iPag~~h~~~~~~~~~~~l~~  323 (350)
T 1juh_A          248 NYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFV  323 (350)
T ss_dssp             CEEEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESSSSEEEEEE
T ss_pred             EEEEEEEeeccccCCCCCCcccCCCcEEEEEEeeEEEEEECCeEEEEeCCCCEEEECCCCCEEEEecCCeEEEEEE
Confidence            689988888653   222212245678999999999999988 89999999999999999988876434 344433

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=96.71  E-value=0.013  Score=53.03  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             CCceEEEEEEeCCCCeee---ccCCCCeEEEEEEcCcEEEEeCC----cEEEeCcccEEEEcCCCcEEEEec---CcEEE
Q 013464          360 FDEFEVDCCILPKGTSSV---FPAVSGPSIFLVTDGEGSMLTAS----HNDAVAEGDVLFAPANTEINITTS---SKLQL  429 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~---~~~~~~~~il~v~~G~~~i~~~~----~~~~l~~G~~~~Ipa~~~~~i~~~---~~~~~  429 (442)
                      ...|.+.++++.++....   ...+.+..+++|++|++++..++    +.+.|++||++++|++..-.+.+.   .++++
T Consensus       114 ~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~  193 (198)
T 2bnm_A          114 APSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKL  193 (198)
T ss_dssp             STTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEEE
T ss_pred             CCcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeCCCCceEEEecCCCCCeEE
Confidence            466888888887765332   22345679999999999999888    899999999999999998666553   44555


Q ss_pred             EEE
Q 013464          430 YRA  432 (442)
Q Consensus       430 ~~a  432 (442)
                      +..
T Consensus       194 l~v  196 (198)
T 2bnm_A          194 IAV  196 (198)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=96.69  E-value=0.0055  Score=59.16  Aligned_cols=73  Identities=14%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      -..|.+..+++.+|.........+-.+++|++|++++..+ +++..|++||++++|++..-++++.+.++++..
T Consensus        67 G~~f~~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~y~p~~~~H~~~N~~~Ar~l~V  140 (266)
T 4e2q_A           67 GSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVF  140 (266)
T ss_dssp             TCSSEEEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CCCEEECTTEEEEECTTCCCEEEESSCEEEEEE
T ss_pred             CCcEEEEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcEEEEcCCCEEEECCCCCEEEEeCCCEEEEEE
Confidence            3579999999987643222234567899999999999998 899999999999999999988888777776664

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=96.65  E-value=0.011  Score=53.38  Aligned_cols=76  Identities=11%  Similarity=0.075  Sum_probs=58.1

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCCC
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNSR  437 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~~  437 (442)
                      .-+.+.++++.+|.....-...+...++|++|++++..+ ++++.|++||++ +|++..-.+++  +..++++....+..
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P~~  155 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIEAP  155 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEECC
T ss_pred             CCeEEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcCCC
Confidence            457777888877654332233456788999999999987 788999999999 99999866765  45688888777655

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=96.59  E-value=0.017  Score=56.56  Aligned_cols=78  Identities=21%  Similarity=0.136  Sum_probs=60.7

Q ss_pred             CCceEEEEEEeCCCCeeeccCCC-CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEEcCCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVS-GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAGVNSR  437 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~~~~  437 (442)
                      ...|.+..+.+..+.......+. ...+++|++|++++..+++...+++||++++|++..-.+.+ +..++++..+.+..
T Consensus        43 ~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~~~~~~~~~p~~  122 (337)
T 1y3t_A           43 GDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGERYLLISGDYANIPAGTPHSYRMQSHRTRLVSYTMKGN  122 (337)
T ss_dssp             TSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEECSTTEEEEEEEETTS
T ss_pred             CCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCEEEEECCCCEEEECCCCcEEEEECCCCeEEEEEECCCC
Confidence            35789999888877544333344 67899999999999999999999999999999999866665 33567776665554

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=96.58  E-value=0.014  Score=51.85  Aligned_cols=71  Identities=10%  Similarity=0.120  Sum_probs=54.3

Q ss_pred             eEEEEEEeCCCCeeeccCCCCeEEEEEEc--CcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464          363 FEVDCCILPKGTSSVFPAVSGPSIFLVTD--GEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS  436 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~~~~~~~~il~v~~--G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~  436 (442)
                      |++..+++..+..... -.....+++|++  |++++..+++.+.+++||+++||++..-++.+  +++++....|.
T Consensus        47 ~sv~~v~~g~~~~~H~-H~~~~E~~yVLe~~G~g~v~idge~~~l~~GD~v~IPpg~~H~i~g--~l~~L~I~~Pp  119 (157)
T 4h7l_A           47 VSVHYTQITKAARTHY-HREHQEIYVVLDHAAHATIELNGQSYPLTKLLAISIPPLVRHRIVG--EATIINIVSPP  119 (157)
T ss_dssp             CEEEEEEECSCCCCBB-CSSCEEEEEEEEECTTCEEEETTEEEECCTTEEEEECTTCCEEEES--CEEEEEEEESS
T ss_pred             EEEEEEeCCCCccceE-CCCCcEEEEEEecCcEEEEEECCEEEEeCCCCEEEECCCCeEeeEC--CEEEEEEECCC
Confidence            5666667654433321 123468999999  99999999999999999999999999866654  78888877664

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=96.50  E-value=0.0083  Score=50.74  Aligned_cols=57  Identities=16%  Similarity=0.151  Sum_probs=45.9

Q ss_pred             CC-eEEEEEEcCcEEEEeCC-cEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEEcCCCc
Q 013464          382 SG-PSIFLVTDGEGSMLTAS-HNDAVAEGDVLFAPANTEINITT-SSKLQLYRAGVNSRF  438 (442)
Q Consensus       382 ~~-~~il~v~~G~~~i~~~~-~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~~~~~  438 (442)
                      .. ..+++|++|++++..++ +.+.+++||+++||++..-.+.+ +...+++..+.+..+
T Consensus        62 ~~~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~~~l~~~~p~~~  121 (134)
T 2o8q_A           62 TVGFQLFYVLRGWVEFEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDLEVLEIVSPAGF  121 (134)
T ss_dssp             CCSCEEEEEEESEEEEEETTTEEEEEETTCEEECCTTCCEEEEEECTTCEEEEEESSTTC
T ss_pred             CCCcEEEEEEeCEEEEEECCcEEEEecCCCEEEECCCCcEEeEeCCCCeEEEEEECCCch
Confidence            44 89999999999999988 99999999999999999855654 345666666666553

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=96.46  E-value=0.0082  Score=49.20  Aligned_cols=49  Identities=10%  Similarity=0.171  Sum_probs=40.4

Q ss_pred             CCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEecCcEEE
Q 013464          381 VSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITTSSKLQL  429 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~  429 (442)
                      .+...+++|++|++++..+ ++.+.|++||++++|++..-++++.++.+.
T Consensus        47 H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~   96 (101)
T 1o5u_A           47 YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRK   96 (101)
T ss_dssp             CSSCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             CCceEEEEEEeCEEEEEECCCCEEEECCCCEEEECCCCcEEEEeCCCeeE
Confidence            3467899999999999988 889999999999999999866665444433

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=96.44  E-value=0.017  Score=45.95  Aligned_cols=50  Identities=14%  Similarity=0.290  Sum_probs=40.8

Q ss_pred             CCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEE
Q 013464          381 VSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLY  430 (442)
Q Consensus       381 ~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~  430 (442)
                      ... ..+++|++|++++..+++...+++||+++||++..-.+.+.++..++
T Consensus        47 H~~~~e~~~v~~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l   97 (102)
T 3d82_A           47 HADTDEVFIVMEGTLQIAFRDQNITLQAGEMYVIPKGVEHKPMAKEECKIM   97 (102)
T ss_dssp             CTTCCEEEEEEESEEEEECSSCEEEEETTEEEEECTTCCBEEEEEEEEEEE
T ss_pred             CCCCcEEEEEEeCEEEEEECCEEEEEcCCCEEEECCCCeEeeEcCCCCEEE
Confidence            445 89999999999999999999999999999999997555543344443

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=96.43  E-value=0.013  Score=52.81  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=54.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC----CcEEEeCcccEEEEcCCCcEEEEe--cC-cEEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA----SHNDAVAEGDVLFAPANTEINITT--SS-KLQLYRAG  433 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~----~~~~~l~~G~~~~Ipa~~~~~i~~--~~-~~~~~~a~  433 (442)
                      ..+++.++++.++.....-..+...+++|++|++++...    +....|++||++++|++....+.+  ++ .+.++...
T Consensus        39 ~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~  118 (178)
T 1dgw_A           39 RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFA  118 (178)
T ss_dssp             TTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEE
T ss_pred             CcEEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEE
Confidence            569999999987754322122468999999999999753    568899999999999999866655  33 45555543

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=96.33  E-value=0.015  Score=56.30  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             CCceEEEEEEeCCCCeeec--cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVF--PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAG  433 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~--~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~  433 (442)
                      ...|.+.++++.++.....  .......+++|++|++++..++++..|++||++++|++..-.+++  +..++++...
T Consensus        65 ~~~~~~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~v~  142 (278)
T 1sq4_A           65 AETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIR  142 (278)
T ss_dssp             CCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             CCcEEEEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCcEEEEECCCCCEEEEEEE
Confidence            4679999999977654311  123467899999999999999999999999999999999877765  3456655443

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=96.30  E-value=0.021  Score=54.06  Aligned_cols=71  Identities=17%  Similarity=0.188  Sum_probs=55.7

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      ...|.+..+++.++...... . +-.+++|++|++++..++++..|++||++++|++..-.+++.+.++++..
T Consensus        47 ~~~~~~~~~~l~Pg~~~~~~-~-~ee~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~~~l~v  117 (246)
T 1sfn_A           47 GARFVQFTAEMPAGAQATES-V-YQRFAFVLSGEVDVAVGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVF  117 (246)
T ss_dssp             CCSSEEEEEEECTTCEEECC-S-SEEEEEEEEEEEEEECSSCEEEECTTEEEEECTTCCCEEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEECCCCcCCCC-c-eeEEEEEEECEEEEEECCEEEEECCCCEEEECCCCCEEEEeCCCEEEEEE
Confidence            46799999999877554322 2 56788999999999999999999999999999999866655445555544

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=96.18  E-value=0.017  Score=49.02  Aligned_cols=77  Identities=13%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             EECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe-CCcEEEeCcccEEEEcCCCcEEEEecCcE-EEEEE
Q 013464          355 RYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT-ASHNDAVAEGDVLFAPANTEINITTSSKL-QLYRA  432 (442)
Q Consensus       355 ~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~-~~~~a  432 (442)
                      .|..+...+.+-.+++..+. ........-.++.|++|+++|.. +++.+.|+.||++++|++...++++.+.. ++|..
T Consensus        41 ~~~~~~g~~~~g~w~~~pG~-~~~~~~~~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv~  119 (123)
T 3bcw_A           41 AFEGGQGKVESGVWESTSGS-FQSNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFV  119 (123)
T ss_dssp             EEEETTTTEEEEEEEEEEEE-EECCCTTEEEEEEEEEEEEEEECTTCCEEEEETTCEEEECTTCCCEEEEEEEEEEEEEE
T ss_pred             EEeCCCCCEEEEEEEECCCc-eeeEcCCCcEEEEEEEEEEEEEECCCeEEEECCCCEEEECCCCeEEEEECCceeEEEEE
Confidence            34445566777777776553 22222222689999999999998 78889999999999999998666553333 44544

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=96.15  E-value=0.04  Score=53.11  Aligned_cols=78  Identities=18%  Similarity=0.228  Sum_probs=59.4

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEe--Cc--------ccEEEEcCCCcEEEEecCcEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAV--AE--------GDVLFAPANTEINITTSSKLQL  429 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l--~~--------G~~~~Ipa~~~~~i~~~~~~~~  429 (442)
                      ..+-.+..+++.+|+++.+...+.=.+++.+.|.++|+.++++..+  .+        .++++||.+..++|++..++++
T Consensus        26 ~~y~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~  105 (270)
T 2qjv_A           26 WEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLEL  105 (270)
T ss_dssp             SSSCEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEE
T ss_pred             cEEeEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceE
Confidence            4453444555567887776554455678888999999999988766  44        5899999999999998778999


Q ss_pred             EEEEcCCC
Q 013464          430 YRAGVNSR  437 (442)
Q Consensus       430 ~~a~~~~~  437 (442)
                      +++..+..
T Consensus       106 ~v~sAp~~  113 (270)
T 2qjv_A          106 AVCSAPGF  113 (270)
T ss_dssp             EEEEEECC
T ss_pred             EEEeeecC
Confidence            99886643

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=96.13  E-value=0.018  Score=46.66  Aligned_cols=51  Identities=12%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             CCC-eEEEEEEcCcEEEEeCC-cEEEeCcccEEEEcCCCcEEEEecCcEEEEE
Q 013464          381 VSG-PSIFLVTDGEGSMLTAS-HNDAVAEGDVLFAPANTEINITTSSKLQLYR  431 (442)
Q Consensus       381 ~~~-~~il~v~~G~~~i~~~~-~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~  431 (442)
                      ... ..+++|++|++++..++ +.+.+++||+++||++..-.+.+.++..++.
T Consensus        45 H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~   97 (107)
T 2i45_A           45 HGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRPRSENGCSLVL   97 (107)
T ss_dssp             C--CCEEEEESSSCEEEEETTSCEEEECTTEEEEECTTCCEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEEECCCCcEeeEeCCCeEEEE
Confidence            344 89999999999999988 9999999999999999986565544455443

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=96.07  E-value=0.071  Score=50.47  Aligned_cols=73  Identities=8%  Similarity=0.125  Sum_probs=55.4

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEE-EEEEEc
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQ-LYRAGV  434 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~-~~~a~~  434 (442)
                      .+-.++-.+.+ .+.. .......-.+++|++|+.+|+.+++.+.+++||+++||++..+++...+.++ +|.++-
T Consensus        44 ~~~~~~G~~~~-~g~~-~v~~~p~dE~~~VleG~~~lt~~g~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~~  117 (238)
T 3myx_A           44 EQGIAAGIVEF-GTAL-SVEAYPYTEMLVMHRGSVTLTSGTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCAST  117 (238)
T ss_dssp             TTSEEEEEEEE-CSEE-EESSCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTCCEEEEECTTEEEEEEEEC
T ss_pred             CCCeEEEEEEe-cccc-ccccCCCcEEEEEEEeEEEEECCCeEEEEcCCCEEEECCCCEEEEEecCCeEEEEEecc
Confidence            46677777777 3432 2233455789999999999988889999999999999999999998755554 444443

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=95.95  E-value=0.024  Score=53.99  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=54.4

Q ss_pred             CCceEEEEEEeCCCCeeeccCC-C-CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAV-S-GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAG  433 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~-~-~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~  433 (442)
                      ...|.+..+++.++........ . .-.+++|++|++++..++++..|++||++++|++..-.+++  +..++++...
T Consensus        56 ~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v~  133 (261)
T 1rc6_A           56 GASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYK  133 (261)
T ss_dssp             TCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CCcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence            3567888888866543221112 2 34689999999999999999999999999999999866765  3456665544

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=95.88  E-value=0.061  Score=50.13  Aligned_cols=78  Identities=14%  Similarity=0.134  Sum_probs=63.3

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEEcCCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAGVNSR  437 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~~~~  437 (442)
                      .+.+++-.+.+.++..+..-....-.+++|++|.+++..+ ++...++.||++++|++..-.++. +.++.++.++...+
T Consensus       129 s~~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~dePllalwvW~G~~  208 (217)
T 4b29_A          129 TQSLRVTVGYWGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLTDPILTLVLWRGAG  208 (217)
T ss_dssp             CSSCEEEEEEECSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCEEEECTTCCEEEECCSSCEEEEEEEESTT
T ss_pred             CCeEEEEEEEECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCEEEcCCCCceeEEECCccEEEEEEEeCCC
Confidence            5778888888888866544345568999999999999776 788999999999999999855544 67888888887766

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=95.82  E-value=0.2  Score=51.73  Aligned_cols=71  Identities=15%  Similarity=0.349  Sum_probs=48.2

Q ss_pred             ceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe--CC----------c----EEEeCcccEEEEcCCCcEEEEec
Q 013464          362 EFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT--AS----------H----NDAVAEGDVLFAPANTEINITTS  424 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~--~~----------~----~~~l~~G~~~~Ipa~~~~~i~~~  424 (442)
                      ..++.++.+.++.-... .......|++|++|++.+..  ..          .    +..|++||+++||++......+.
T Consensus       280 ~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~  359 (445)
T 2cav_A          280 DILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA  359 (445)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CCEEEEEEECTTCEEEECTTCCEEEEES
T ss_pred             CCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC
Confidence            46888888877643211 11356899999999998852  21          2    45599999999999998445554


Q ss_pred             CcEEEEEE
Q 013464          425 SKLQLYRA  432 (442)
Q Consensus       425 ~~~~~~~a  432 (442)
                      +++.++..
T Consensus       360 ~~~~~v~f  367 (445)
T 2cav_A          360 SDLNMVGI  367 (445)
T ss_dssp             SSEEEEEE
T ss_pred             CCeEEEEE
Confidence            56555443

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=95.80  E-value=0.13  Score=43.35  Aligned_cols=77  Identities=12%  Similarity=0.118  Sum_probs=52.4

Q ss_pred             CCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcC
Q 013464          358 PPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVN  435 (442)
Q Consensus       358 ~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~  435 (442)
                      .+...|.+-..+...|. ...........+.+|+|+++|+.+ |+...++.||++++|++...+.+-.+.++=+..++|
T Consensus        37 ~~~g~~~~GvWe~tPG~-~~~~~~~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~~P~G~~gtWev~e~vrK~~~~~~  114 (116)
T 3es4_A           37 DVENGTIVAVWMAEPGI-YNYAGRDLEETFVVVEGEALYSQADADPVKIGPGSIVSIAKGVPSRLEILSSFRKLATVIP  114 (116)
T ss_dssp             SSSSCCEEEEEEECSEE-EEECCCSEEEEEEEEECCEEEEETTCCCEEECTTEEEEECTTCCEEEEECSCEEEEEEEEE
T ss_pred             CCCCCEEEEEEecCCce-eECeeCCCcEEEEEEEeEEEEEeCCCeEEEECCCCEEEECCCCeEEEEEeEEEeEEEEEec
Confidence            34455666555665552 222222233889999999999874 667999999999999999877766555644444444

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=95.72  E-value=0.12  Score=53.02  Aligned_cols=68  Identities=25%  Similarity=0.411  Sum_probs=47.4

Q ss_pred             eEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe---CC-------------------------c--EEEeCcccEE
Q 013464          363 FEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT---AS-------------------------H--NDAVAEGDVL  411 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~---~~-------------------------~--~~~l~~G~~~  411 (442)
                      .++.++.+.++.-... .......+++|++|++.+..   ++                         .  ...|++||++
T Consensus       263 is~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~  342 (418)
T 3s7i_A          263 MMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVF  342 (418)
T ss_dssp             CEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEECTTCEE
T ss_pred             eeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeeeCCCCEE
Confidence            4889999987643221 11246899999999998741   11                         1  4668999999


Q ss_pred             EEcCCCcEEEEecCcEEEE
Q 013464          412 FAPANTEINITTSSKLQLY  430 (442)
Q Consensus       412 ~Ipa~~~~~i~~~~~~~~~  430 (442)
                      +||++......+++++.++
T Consensus       343 vvP~G~~~~~~~~~~l~~v  361 (418)
T 3s7i_A          343 IMPAAHPVAINASSELHLL  361 (418)
T ss_dssp             EECTTCCEEEEESSCEEEE
T ss_pred             EECCCCEEEEECCCCEEEE
Confidence            9999998555566665543

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=95.71  E-value=0.069  Score=48.82  Aligned_cols=75  Identities=11%  Similarity=0.012  Sum_probs=55.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEeC------Cc--EEEeCcccEEEEcCCCcEEEEe--cCcEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLTA------SH--NDAVAEGDVLFAPANTEINITT--SSKLQL  429 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~~------~~--~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~  429 (442)
                      ..+.+.++++..+.....-.+.. ..+++|++|++++...      ++  +..+++||+++||++..-.+.+  ++++.+
T Consensus        70 ~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~  149 (201)
T 1fi2_A           70 LGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYM  149 (201)
T ss_dssp             SSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEE
T ss_pred             CceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEE
Confidence            35889999998775433222343 5999999999998652      44  7899999999999999855554  456777


Q ss_pred             EEEEcC
Q 013464          430 YRAGVN  435 (442)
Q Consensus       430 ~~a~~~  435 (442)
                      +..+..
T Consensus       150 l~v~~~  155 (201)
T 1fi2_A          150 VVSFNS  155 (201)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            666543

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=95.62  E-value=0.079  Score=48.07  Aligned_cols=75  Identities=12%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             ceEEEEEEeCCCCe------eeccCC---CCeEEEEEEcCcEEEEeCCcE-----EEeCcccEEEEcCCCcEEEEe--cC
Q 013464          362 EFEVDCCILPKGTS------SVFPAV---SGPSIFLVTDGEGSMLTASHN-----DAVAEGDVLFAPANTEINITT--SS  425 (442)
Q Consensus       362 ~F~l~~i~~~~~~~------~~~~~~---~~~~il~v~~G~~~i~~~~~~-----~~l~~G~~~~Ipa~~~~~i~~--~~  425 (442)
                      .+.+....+.+|..      ...-.+   +...+++|++|++++..+++.     +.+++||+++||++..-.+.+  +.
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~~  145 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDE  145 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSS
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCcc
Confidence            56666667776643      111112   236999999999999876655     999999999999999855554  45


Q ss_pred             cEEEEEEEcCC
Q 013464          426 KLQLYRAGVNS  436 (442)
Q Consensus       426 ~~~~~~a~~~~  436 (442)
                      ++.++..+.+.
T Consensus       146 ~~~~l~v~~~~  156 (190)
T 1x82_A          146 PFIFLAIYPAD  156 (190)
T ss_dssp             CEEEEEEEETT
T ss_pred             cEEEEEEECCC
Confidence            67666655543

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=95.48  E-value=0.035  Score=53.31  Aligned_cols=73  Identities=8%  Similarity=0.089  Sum_probs=53.8

Q ss_pred             CCceEEEEEEeCCCCeeeccCC--CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAV--SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~--~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ...|.+..+++.++........  .+-.+++|++|++++..++++..|++||++++|++..-.+++  +..++++.+
T Consensus        59 ~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v  135 (274)
T 1sef_A           59 GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLY  135 (274)
T ss_dssp             TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence            3568888888876543221111  234689999999999999999999999999999999866766  345555544

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=95.31  E-value=0.013  Score=53.06  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             hcceeeECCCCCEEEecCCCceee---ecCcE-EEEeecCC
Q 013464          277 FFFNYVKLNPGQALYLGANEPHAY---ISGEC-IECMATSD  313 (442)
Q Consensus       277 ~~Ln~v~l~pGd~i~ipaGt~HAy---~~G~~-vEim~~SD  313 (442)
                      ...+.+.|+|||.+.||+|+.|+.   ..|.+ .|++..+|
T Consensus       116 ~a~~~i~L~pGesvtIppg~~H~f~ageegvli~EvSt~~d  156 (175)
T 2y0o_A          116 TVWHEIELEPGGQYTIPPNTKHWFQAGEEGAVVTEMSSTST  156 (175)
T ss_dssp             CCCEEEEECTTCEEEECTTCCEEEEEEEEEEEEEEEEECCC
T ss_pred             cCCcEEEECCCCEEEECCCCcEEEEeCCCCEEEEEEeCCCC
Confidence            467899999999999999999999   45555 49999876

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=95.25  E-value=0.13  Score=50.92  Aligned_cols=76  Identities=11%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             CceEEEEEEeCCCCeeeccCCC-CeEEEEEEcCcEEEEe---CC--cEEEeCcccEEEEcCCCcEEEEec--CcEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVS-GPSIFLVTDGEGSMLT---AS--HNDAVAEGDVLFAPANTEINITTS--SKLQLYRA  432 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~-~~~il~v~~G~~~i~~---~~--~~~~l~~G~~~~Ipa~~~~~i~~~--~~~~~~~a  432 (442)
                      ..+.+.++.+.++.....-.+. ...+++|++|++++..   ++  ....|++||+++||++..-.+.+.  .++.++..
T Consensus        50 ~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v  129 (361)
T 2vqa_A           50 KGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLV  129 (361)
T ss_dssp             CSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEE
Confidence            4678888888776543322234 7899999999999986   44  468999999999999998666653  46777655


Q ss_pred             EcCC
Q 013464          433 GVNS  436 (442)
Q Consensus       433 ~~~~  436 (442)
                      +-+.
T Consensus       130 ~~~~  133 (361)
T 2vqa_A          130 FNDG  133 (361)
T ss_dssp             ESST
T ss_pred             ECCC
Confidence            5443

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=95.12  E-value=0.093  Score=45.06  Aligned_cols=57  Identities=16%  Similarity=0.187  Sum_probs=44.3

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec---CcEEEEEEEcCCC
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS---SKLQLYRAGVNSR  437 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~---~~~~~~~a~~~~~  437 (442)
                      .+.+.+++|++|++++..+++.+.+++||.++||++..-.+...   ++.+.+......+
T Consensus        36 h~~~~i~~v~~G~~~~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~f~~~   95 (164)
T 2arc_A           36 MKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPR   95 (164)
T ss_dssp             CSSEEEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEECCC
T ss_pred             CCceEEEEEEEeEEEEEECCEEEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEEECCh
Confidence            46788999999999999999999999999999999987545442   3355555444433

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=95.04  E-value=0.072  Score=50.45  Aligned_cols=74  Identities=9%  Similarity=0.118  Sum_probs=54.3

Q ss_pred             CCceEEEEEEeCCCCeeeccCCC-CeEEEEEEcCcEEEEe--------CCc------------EEEeCcccEEEEcCCCc
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVS-GPSIFLVTDGEGSMLT--------ASH------------NDAVAEGDVLFAPANTE  418 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~-~~~il~v~~G~~~i~~--------~~~------------~~~l~~G~~~~Ipa~~~  418 (442)
                      ...|++.++.++++.....-.+. .-.+++|++|++++..        +++            ...+++||++++|++..
T Consensus        40 ~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~  119 (239)
T 2xlg_A           40 DIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYM  119 (239)
T ss_dssp             TEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEE
T ss_pred             CCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCC
Confidence            45689999888776432211123 4679999999999987        777            89999999999999988


Q ss_pred             EEEEe--cCcEEE-EEEE
Q 013464          419 INITT--SSKLQL-YRAG  433 (442)
Q Consensus       419 ~~i~~--~~~~~~-~~a~  433 (442)
                      -.+.+  +.++++ +..+
T Consensus       120 H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          120 HGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEECCSSSCEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEEE
Confidence            66665  445676 4443

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=94.91  E-value=0.079  Score=52.96  Aligned_cols=70  Identities=10%  Similarity=0.190  Sum_probs=53.1

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEE-EeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSM-LTASHNDAVAEGDVLFAPANTEINITT--SSKLQLY  430 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i-~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~  430 (442)
                      ..|.+....+.+|.....-......+.+|++|++++ ..+++.+.+++||+++||++..-.+.+  ++++.++
T Consensus        98 ~~l~~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l  170 (354)
T 2d40_A           98 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWL  170 (354)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred             CcEEEEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            457788888877764432234567999999999988 778899999999999999999866665  3445444

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=94.89  E-value=0.09  Score=49.73  Aligned_cols=77  Identities=10%  Similarity=0.270  Sum_probs=58.0

Q ss_pred             CceEEEEEEeCCCCeeecc--CCCCeEEEEEEcCcEEEEeCCc---EEEeCcccEEEEcCCCcEEEEec----CcEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFP--AVSGPSIFLVTDGEGSMLTASH---NDAVAEGDVLFAPANTEINITTS----SKLQLYR  431 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~--~~~~~~il~v~~G~~~i~~~~~---~~~l~~G~~~~Ipa~~~~~i~~~----~~~~~~~  431 (442)
                      ..|.+..+.+.......+.  -.+.+.|++|++|+++ ..+++   .+.+.+|+.++||++....+...    ++.+.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~G~~~-~i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~~~   83 (276)
T 3gbg_A            5 KSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAK-LIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSV   83 (276)
T ss_dssp             TTEEEEEEEECTTCEEEEEEEECSSCEEEEESSSCEE-EEETTTTEEEEECTTEEEEECTTCEEEEEEEECCSSCEEEEE
T ss_pred             hhhhhhhhhhhcccchhccHhhhcceEEEEEecCceE-EECCccceeEEEcCCCEEEEcCCCceeeccccCCCcceEEEE
Confidence            5688999988766544332  2467999999999999 88888   99999999999999987555433    5666666


Q ss_pred             EEcCCCc
Q 013464          432 AGVNSRF  438 (442)
Q Consensus       432 a~~~~~~  438 (442)
                      .....++
T Consensus        84 i~f~~~~   90 (276)
T 3gbg_A           84 ITISDSF   90 (276)
T ss_dssp             EEECHHH
T ss_pred             EEEcHHH
Confidence            6555443

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=94.76  E-value=0.16  Score=47.62  Aligned_cols=68  Identities=16%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             eEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEE-EcCCCcEEEEe--cCcEEEE
Q 013464          363 FEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLF-APANTEINITT--SSKLQLY  430 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~-Ipa~~~~~i~~--~~~~~~~  430 (442)
                      ..+..+.+.+|.....-......+++|++|++++..+++...+.+||+++ ||++..-.+.+  +..+.++
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~~~~~~l  104 (243)
T 3h7j_A           34 TEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDVTRKMTALESAYIAPPHVPHGARNDTDQEVIAI  104 (243)
T ss_dssp             EEEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTEEEEEETTTCEEEECTTCCEEEEECSSSCEEEE
T ss_pred             CEEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCEEEEECCCCEEEEcCCCCcEeeEeCCCCcEEEE
Confidence            45556667777544333456788999999999999999999999999996 99999866655  3344444

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=94.61  E-value=0.12  Score=52.97  Aligned_cols=73  Identities=12%  Similarity=0.163  Sum_probs=54.4

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe----CCcEEEeCcccEEEEcCCCcEEEEe---cCcEEEEEEEc
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT----ASHNDAVAEGDVLFAPANTEINITT---SSKLQLYRAGV  434 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~----~~~~~~l~~G~~~~Ipa~~~~~i~~---~~~~~~~~a~~  434 (442)
                      .+++.++++.++.....-..+...+++|++|++++..    .+.+..+++||+++||++..-.+.+   ++++.++..+.
T Consensus        48 ~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~  127 (416)
T 1uij_A           48 DYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAI  127 (416)
T ss_dssp             TCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEE
T ss_pred             cEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEec
Confidence            4999999998875332222346789999999999874    3568999999999999999855554   34666665543

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=94.58  E-value=0.16  Score=50.81  Aligned_cols=73  Identities=14%  Similarity=0.133  Sum_probs=53.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe---CCc--EEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT---ASH--NDAVAEGDVLFAPANTEINITT-SSKLQLYRAG  433 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~  433 (442)
                      ..|.+.++.+.++.....-.+....+++|++|++++..   +++  ...+++||+++||++..-.+.+ +..+.++..+
T Consensus        77 ~~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~~v~  155 (385)
T 1j58_A           77 ENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVF  155 (385)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEE
T ss_pred             CceEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCCCEEEEEEE
Confidence            46888889888775433222346899999999999987   566  5699999999999999855554 2234544444

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=94.57  E-value=0.093  Score=52.82  Aligned_cols=63  Identities=16%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEE-EEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGS-MLTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~-i~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      +.+.+....+.+|.....-.+....+.+|++|+|+ +..+++++.+++||++++|++..-.+.+
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~~~~~~GD~v~iP~g~~H~~~N  164 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMN  164 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEEEEEETTCEEEECTTCCEEEEE
T ss_pred             CceEEEEEEECCCCccCceecccceEEEEEecceEEEEECCEEEEEeCCCEEEECCCCcEEeEe
Confidence            45777777787776543323445789999999996 7778999999999999999999866666

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=94.50  E-value=0.075  Score=48.67  Aligned_cols=57  Identities=18%  Similarity=0.207  Sum_probs=44.1

Q ss_pred             CCeEEEEEEcCcEEEEeCCc-----EEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCCCc
Q 013464          382 SGPSIFLVTDGEGSMLTASH-----NDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNSRF  438 (442)
Q Consensus       382 ~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~~~  438 (442)
                      +...|.+|++|+|.+..+++     .+.+++||.++||+++.-.+..  +..+..++.|.+.+.
T Consensus       103 ~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~~~  166 (191)
T 1vr3_A          103 LDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPV  166 (191)
T ss_dssp             SSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSSCC
T ss_pred             CcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCCCC
Confidence            45789999999999976543     4689999999999999844443  345788888877663

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=94.29  E-value=0.11  Score=52.87  Aligned_cols=64  Identities=11%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEE-EeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSM-LTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i-~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      .+.+.+....+.+|+....-.+....+.+|++|+|.. ..+++++.+++||++++|++..-.+.+
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~~~~~~GD~i~~P~g~~H~~~N  184 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGI  184 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred             CCeeEEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEEEEEcCCCEEEECcCCCEEEEc
Confidence            3558788888888865433233456899999999976 678899999999999999999866655

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=94.00  E-value=0.16  Score=52.43  Aligned_cols=76  Identities=13%  Similarity=0.189  Sum_probs=55.5

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--C--CcEEEeCcccEEEEcCCCcEEEEec---CcEEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--A--SHNDAVAEGDVLFAPANTEINITTS---SKLQLYRAG  433 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~--~~~~~l~~G~~~~Ipa~~~~~i~~~---~~~~~~~a~  433 (442)
                      ..+++.++++.++........+...+++|++|++++..  .  ..+..+++||++++|++..-.+.+.   .++.++..+
T Consensus        84 g~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~  163 (445)
T 2cav_A           84 RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFA  163 (445)
T ss_dssp             TTEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             CcEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEe
Confidence            34888999998774332222357899999999999863  2  3688999999999999998666552   467777665


Q ss_pred             cCC
Q 013464          434 VNS  436 (442)
Q Consensus       434 ~~~  436 (442)
                      .++
T Consensus       164 ~~~  166 (445)
T 2cav_A          164 ITF  166 (445)
T ss_dssp             ECC
T ss_pred             ccC
Confidence            543

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=93.87  E-value=0.15  Score=52.43  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--C--CcEEEeCcccEEEEcCCCcEEEEec---CcEEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--A--SHNDAVAEGDVLFAPANTEINITTS---SKLQLYRAG  433 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~--~~~~~l~~G~~~~Ipa~~~~~i~~~---~~~~~~~a~  433 (442)
                      .+++.++++.++.....-..+...+++|++|++++..  .  ..+..|++||++++|++....+.+.   .++.++..+
T Consensus        60 ~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~  138 (434)
T 2ea7_A           60 NYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLA  138 (434)
T ss_dssp             TCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             cEEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEe
Confidence            4899999998875433222346789999999999864  2  4588999999999999998556553   356666554

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=93.86  E-value=0.28  Score=51.19  Aligned_cols=73  Identities=18%  Similarity=0.172  Sum_probs=53.1

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC------------------------------CcEEEeCcccE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA------------------------------SHNDAVAEGDV  410 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~------------------------------~~~~~l~~G~~  410 (442)
                      -.+++.++++.++.-......+.+.+++|++|++.+...                              .+...|++||+
T Consensus        43 ~gv~~~r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~~~~d~~qkv~~l~~GDv  122 (493)
T 2d5f_A           43 AGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDV  122 (493)
T ss_dssp             HTCEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC-------------CSEEESCEEEEETTEE
T ss_pred             CCEEEEEEEeCCCcEeCceecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccccccccccceEEEecCCCE
Confidence            458999999987753322224568999999999998632                              13678999999


Q ss_pred             EEEcCCCcEEEEec--CcEEEEEEE
Q 013464          411 LFAPANTEINITTS--SKLQLYRAG  433 (442)
Q Consensus       411 ~~Ipa~~~~~i~~~--~~~~~~~a~  433 (442)
                      ++|||+....+.+.  .++.++..+
T Consensus       123 i~iPaG~~h~~~N~g~~~l~~v~~~  147 (493)
T 2d5f_A          123 LVIPPGVPYWTYNTGDEPVVAISLL  147 (493)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             EEECCCCcEEEEeCCCCCEEEEEEe
Confidence            99999998666663  346665544

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=93.02  E-value=0.36  Score=47.99  Aligned_cols=77  Identities=13%  Similarity=0.075  Sum_probs=52.2

Q ss_pred             CceEEEEEEeCCCCeee--ccCCC-CeEEEEEEcCcEEEEeCC-----cEEEeCcccEEEEcCCCcEEEEe-cCcEEEEE
Q 013464          361 DEFEVDCCILPKGTSSV--FPAVS-GPSIFLVTDGEGSMLTAS-----HNDAVAEGDVLFAPANTEINITT-SSKLQLYR  431 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~--~~~~~-~~~il~v~~G~~~i~~~~-----~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~  431 (442)
                      ..|.+.....+++....  .-.+. ...+++|++|++++..++     +.+.|++||++++|++..-.+.+ +...+++.
T Consensus        46 ~~~~~~~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~~~l~  125 (350)
T 1juh_A           46 YAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTG  125 (350)
T ss_dssp             TSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTEEEEE
T ss_pred             CcEEEEEEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence            45666644444443211  11233 678999999999998777     89999999999999998866655 22346666


Q ss_pred             EEcCCC
Q 013464          432 AGVNSR  437 (442)
Q Consensus       432 a~~~~~  437 (442)
                      .+.|..
T Consensus       126 v~~p~~  131 (350)
T 1juh_A          126 VIVPGG  131 (350)
T ss_dssp             EEESSC
T ss_pred             EEcCcc
Confidence            655544

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=92.79  E-value=0.47  Score=49.12  Aligned_cols=73  Identities=19%  Similarity=0.145  Sum_probs=52.6

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC--C------------------------cEEEeCcccEEEEcC
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--S------------------------HNDAVAEGDVLFAPA  415 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~------------------------~~~~l~~G~~~~Ipa  415 (442)
                      ...+.|+++.++.-......+.+.+++|++|++.+..-  +                        +...|++||+++||+
T Consensus        62 gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~iPa  141 (459)
T 2e9q_A           62 GVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPA  141 (459)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEEEECT
T ss_pred             ceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEEEECC
Confidence            57888999987643222223578999999999998642  1                        246899999999999


Q ss_pred             CCcEEEEe--cCcEEEEEEEc
Q 013464          416 NTEINITT--SSKLQLYRAGV  434 (442)
Q Consensus       416 ~~~~~i~~--~~~~~~~~a~~  434 (442)
                      +....+.+  +.++.++..+-
T Consensus       142 G~~H~~~N~g~~~l~~l~~~d  162 (459)
T 2e9q_A          142 GVSHWMYNRGQSDLVLIVFAD  162 (459)
T ss_dssp             TCCEEEEECSSSCEEEEEEEE
T ss_pred             CCCEEEEeCCCCCEEEEEEec
Confidence            99866665  34566665553

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=92.55  E-value=0.47  Score=49.34  Aligned_cols=73  Identities=14%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC--C-------------------------cEEEeCcccEEEEc
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--S-------------------------HNDAVAEGDVLFAP  414 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~-------------------------~~~~l~~G~~~~Ip  414 (442)
                      .+++.++++.++.-......+.+.+++|++|++.+...  +                         +...|++||+++||
T Consensus        47 gvs~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~~GDvi~iP  126 (476)
T 1fxz_A           47 GVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVP  126 (476)
T ss_dssp             TCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEEC
T ss_pred             ceEEEEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEEEEeCCCEEEEC
Confidence            57889999987643222223578999999999888532  1                         26789999999999


Q ss_pred             CCCcEEEEe--cCcEEEEEEEc
Q 013464          415 ANTEINITT--SSKLQLYRAGV  434 (442)
Q Consensus       415 a~~~~~i~~--~~~~~~~~a~~  434 (442)
                      ++....+.+  +.++.++..+-
T Consensus       127 aG~~h~~~N~G~~~l~~i~~~d  148 (476)
T 1fxz_A          127 TGVAWWMYNNEDTPVVAVSIID  148 (476)
T ss_dssp             TTCEEEEEECSSSCEEEEEEEC
T ss_pred             CCCcEEEEeCCCCCEEEEEEec
Confidence            999865655  34566665543

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=92.36  E-value=0.37  Score=48.91  Aligned_cols=73  Identities=11%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe----CCcEEEeCcccE------EEEcCCCcEEEEe---cCcE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT----ASHNDAVAEGDV------LFAPANTEINITT---SSKL  427 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~----~~~~~~l~~G~~------~~Ipa~~~~~i~~---~~~~  427 (442)
                      ..+++.++++.++........+...+++|++|++.+..    +..+..|++||.      ++||++....+.+   +.++
T Consensus        50 ~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l  129 (397)
T 2phl_A           50 EDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDL  129 (397)
T ss_dssp             TTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCE
T ss_pred             ccEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCcccccceEEECCCCcEEEEeCCCCCCe
Confidence            45999999998765322222356789999999999864    235788999999      9999999855654   2456


Q ss_pred             EEEEEE
Q 013464          428 QLYRAG  433 (442)
Q Consensus       428 ~~~~a~  433 (442)
                      .++..+
T Consensus       130 ~~i~~~  135 (397)
T 2phl_A          130 RIIQLA  135 (397)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            666554

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=92.12  E-value=0.16  Score=43.96  Aligned_cols=72  Identities=15%  Similarity=0.187  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcE--EEeCcccEEEEcCCCcEE-EEecCcEEEEEEEcCC
Q 013464          365 VDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHN--DAVAEGDVLFAPANTEIN-ITTSSKLQLYRAGVNS  436 (442)
Q Consensus       365 l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~--~~l~~G~~~~Ipa~~~~~-i~~~~~~~~~~a~~~~  436 (442)
                      +..+++++|..+..-.+.+...++|++|+.+...++..  ..+++|+.+++|++..-. ....++..++.++.+.
T Consensus        46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~~e~~~~l~~~~gp  120 (145)
T 2o1q_A           46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRGGKAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSFLGP  120 (145)
T ss_dssp             EEEEEECTTEEECCEEESSCEEEEEEEEEEEETTCGGGTSEEEESSEEEEECTTCEESCCEEEEEEEEEEEEESC
T ss_pred             EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEcCCCEecceEeCCCEEEEECcCCccCCeECCCCeEEEEEECCc
Confidence            55677777765432234467789999999997655455  899999999999998633 3322345666655443

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=92.09  E-value=0.42  Score=46.30  Aligned_cols=54  Identities=11%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc-EEEEe---cCcEEEEEEEcCCC
Q 013464          384 PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE-INITT---SSKLQLYRAGVNSR  437 (442)
Q Consensus       384 ~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~-~~i~~---~~~~~~~~a~~~~~  437 (442)
                      =.+++.+.|.++|+.+++++.|..-++++||.+.. +++.+   ..+++++++..|..
T Consensus        80 E~~iV~lgG~~~V~vdg~~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fav~sAPa~  137 (289)
T 1ywk_A           80 ELGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCVPAH  137 (289)
T ss_dssp             EEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECS
T ss_pred             EEEEEEccCeEEEEECCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEccccC
Confidence            45777889999999999999999999999999987 77775   34588888877654

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=91.81  E-value=0.16  Score=44.95  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=24.7

Q ss_pred             eeECCCCCEEEecCCCceeeecCcE--EEEeecC
Q 013464          281 YVKLNPGQALYLGANEPHAYISGEC--IECMATS  312 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~G~~--vEim~~S  312 (442)
                      .++|+|||+++||+|+.|.+. |.+  +.|+.+.
T Consensus        87 ~~~l~~GD~v~IPpg~~H~i~-g~l~~L~I~~Pp  119 (157)
T 4h7l_A           87 SYPLTKLLAISIPPLVRHRIV-GEATIINIVSPP  119 (157)
T ss_dssp             EEECCTTEEEEECTTCCEEEE-SCEEEEEEEESS
T ss_pred             EEEeCCCCEEEECCCCeEeeE-CCEEEEEEECCC
Confidence            578999999999999999986 554  4655543

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=91.79  E-value=0.74  Score=48.19  Aligned_cols=74  Identities=11%  Similarity=0.151  Sum_probs=52.8

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC--C-------------------------------------
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--S-------------------------------------  400 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~-------------------------------------  400 (442)
                      |..+++.++++.++.-......+.+.+++|++|++.+...  +                                     
T Consensus        45 ~~gvs~~r~~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  124 (510)
T 3c3v_A           45 CAGVALSRLVLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSH  124 (510)
T ss_dssp             HHTCEEEEEEECTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEECCC--------------------CEEEEE
T ss_pred             cCcEEEEEEEECCCCCccceecCCCeEEEEEeCEEEEEEEeCCCcccccccccccccccccccccccccccccccccccc
Confidence            4557899999987743222224578999999999988531  1                                     


Q ss_pred             -cEEEeCcccEEEEcCCCcEEEEec--CcEEEEEEE
Q 013464          401 -HNDAVAEGDVLFAPANTEINITTS--SKLQLYRAG  433 (442)
Q Consensus       401 -~~~~l~~G~~~~Ipa~~~~~i~~~--~~~~~~~a~  433 (442)
                       +...|++||+++|||+....+.+.  .++.++..+
T Consensus       125 qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~  160 (510)
T 3c3v_A          125 QKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLT  160 (510)
T ss_dssp             SCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEE
T ss_pred             ceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEe
Confidence             136899999999999998666653  456665554

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=91.27  E-value=0.11  Score=42.31  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      .+.|++||++++|+|++|++-.
T Consensus        77 ~~~l~~Gd~i~i~~~~~H~~~~   98 (114)
T 2ozj_A           77 KIDLVPEDVLMVPAHKIHAIAG   98 (114)
T ss_dssp             EEEECTTCEEEECTTCCBEEEE
T ss_pred             EEEecCCCEEEECCCCcEEEEe
Confidence            4679999999999999999864

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=91.21  E-value=0.61  Score=48.44  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=49.1

Q ss_pred             ceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeCC----cEE--EeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTAS----HND--AVAEGDVLFAPANTEINITT-SSKLQLYRAG  433 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~~----~~~--~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~  433 (442)
                      .+++.++.+.+|.....-.+ ....+++|++|++++...+    ..+  .|++||+++||++....+.+ +.++.++..+
T Consensus       337 ~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~  416 (476)
T 1fxz_A          337 RLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFK  416 (476)
T ss_dssp             TCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEE
T ss_pred             cceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEE
Confidence            68888888887754322112 3578999999999996532    233  49999999999999844444 3445544444

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=91.14  E-value=0.83  Score=47.84  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             ceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeCC----cEE--EeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTAS----HND--AVAEGDVLFAPANTEINITT-SSKLQLYRAG  433 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~~----~~~--~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~  433 (442)
                      .+++.++.+.+|.....-.+ ....+++|++|++++...+    ..+  .|++||+++||++....+.+ +.++.++..+
T Consensus       371 ~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~Ng~e~l~~l~f~  450 (510)
T 3c3v_A          371 GLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFK  450 (510)
T ss_dssp             TCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEE
T ss_pred             eEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEeCCCCEEEEEEE
Confidence            57888898887754322112 3578999999999996422    233  49999999999999844444 3344444443

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=90.82  E-value=0.48  Score=48.44  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=47.4

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe----CCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT----ASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~----~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      ..+.+.++++.++.-....-.+...|++|++|++.+..    +..+..|++||++.||++.-..+.+
T Consensus        42 ~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P~G~~h~~~N  108 (418)
T 3s7i_A           42 QNHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILN  108 (418)
T ss_dssp             TTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEE
T ss_pred             cceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEECCCCeEEEEe
Confidence            57999999998764322111356889999999998864    2347899999999999999855555

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=90.80  E-value=0.65  Score=48.46  Aligned_cols=74  Identities=11%  Similarity=0.152  Sum_probs=50.7

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CC--c----------------------EEEeCcccEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--AS--H----------------------NDAVAEGDVLFA  413 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~--~----------------------~~~l~~G~~~~I  413 (442)
                      |....+.|+.+.++.-......+.+.|++|++|++.+..  .+  +                      ...|++||+|.|
T Consensus        43 ~~gvs~~R~~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~vi  122 (496)
T 3ksc_A           43 CAGVALSRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAV  122 (496)
T ss_dssp             HHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---------------CCCCCCEEEECTTEEEEE
T ss_pred             cCCceEEEEEecCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchheeeccCCCCEEEE
Confidence            346788899998764321112367999999999998753  21  2                      248999999999


Q ss_pred             cCCCcEEEEe--cCcEEEEEEE
Q 013464          414 PANTEINITT--SSKLQLYRAG  433 (442)
Q Consensus       414 pa~~~~~i~~--~~~~~~~~a~  433 (442)
                      |++....+.+  +.++.++.++
T Consensus       123 PaG~~h~~~N~G~~~lv~v~~~  144 (496)
T 3ksc_A          123 PTGIVFWMYNDQDTPVIAVSLT  144 (496)
T ss_dssp             CTTCEEEEEECSSSCEEEEEEE
T ss_pred             CCCCcEEEEcCCCCCEEEEEEe
Confidence            9999844544  3455555544

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=90.74  E-value=0.1  Score=42.93  Aligned_cols=20  Identities=25%  Similarity=0.270  Sum_probs=18.3

Q ss_pred             eECCCCCEEEecCCCceeee
Q 013464          282 VKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       282 v~l~pGd~i~ipaGt~HAy~  301 (442)
                      +.|++||++|||||++|.+.
T Consensus        75 ~~l~~Gd~i~ipa~~~H~~~   94 (112)
T 2opk_A           75 RVMRPGDWLHVPAHCRHRVA   94 (112)
T ss_dssp             EEECTTEEEEECTTCCEEEE
T ss_pred             EEECCCCEEEECCCCcEEEE
Confidence            57999999999999999974

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=90.67  E-value=2  Score=40.81  Aligned_cols=73  Identities=21%  Similarity=0.233  Sum_probs=53.2

Q ss_pred             eEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcC
Q 013464          363 FEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVN  435 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~  435 (442)
                      -.+..+.++++.++.++...+...+.|++|+++|... ++...+..||.+++..+..+++++..+.+++..-++
T Consensus       182 ~~~~~~~L~~g~~~~~~~~~~~~~l~v~~G~v~v~g~~~~~~~l~~gd~~~l~~~~~l~l~a~~~a~~LL~dl~  255 (256)
T 2vec_A          182 VWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLP  255 (256)
T ss_dssp             CEEEEEEECTTCEEEEECSSSEEEEEEEESCEEEEETTEEEEEECTTCEEEEESCSEEEEEESSSEEEEEEEEC
T ss_pred             cEEEEEEECCCCEEEEecCCCeEEEEEEECEEEECCccccceEECCCCEEEECCCCeEEEEeCCCCEEEEEEec
Confidence            3456667888877665543445888899999999752 234679999999999777788887667777665443

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=90.52  E-value=1.6  Score=40.60  Aligned_cols=72  Identities=17%  Similarity=0.205  Sum_probs=46.8

Q ss_pred             EEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEE
Q 013464          354 TRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLYRA  432 (442)
Q Consensus       354 ~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a  432 (442)
                      .+|....+  .+.-+++++|..+......+..| +||+|+.+-.    ...+.+|+-+-.|++....... +..+++|+=
T Consensus       139 ~L~~~~~E--~v~l~r~~~G~~~~~~~hgG~Ei-lVL~G~~~d~----~~~~~~GsWlR~P~gs~h~~~ag~~g~~i~~k  211 (223)
T 3o14_A          139 LLHEDERE--TVTHRKLEPGANLTSEAAGGIEV-LVLDGDVTVN----DEVLGRNAWLRLPEGEALSATAGARGAKIWMK  211 (223)
T ss_dssp             EEEECSSC--EEEEEEECTTCEEEECCSSCEEE-EEEEEEEEET----TEEECTTEEEEECTTCCEEEEEEEEEEEEEEE
T ss_pred             EEecCCCc--EEEEEEECCCCccCCCCCCcEEE-EEEEeEEEEC----CceECCCeEEEeCCCCccCcEECCCCeEEEEE
Confidence            34553332  34445556777665444456665 8999986532    2689999999999998766554 456667653

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=90.21  E-value=4.2  Score=38.21  Aligned_cols=69  Identities=17%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             eEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcC
Q 013464          363 FEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVN  435 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~  435 (442)
                      -.+..++++++.++.++...+ -..+.|++|+++|..    ..+..|+.+++..+..+++++..+.+++....+
T Consensus       160 ~~~~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v~g----~~l~~gd~~~~~~~~~l~l~a~~~a~~Ll~~~~  229 (242)
T 1tq5_A          160 MELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTING----VKASTSDGLAIWDEQAISIHADSDSEVLLFDLP  229 (242)
T ss_dssp             CEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEETT----EEEETTCEEEEESCSCEEEEESSSEEEEEEEEC
T ss_pred             CEEEEEEECCCCEEEeecCCCcEEEEEEccCcEEECC----EEeCCCCEEEECCCCeEEEEeCCCCEEEEEECC
Confidence            456667778787766543333 456788999999842    479999999999877788987666777665443

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=90.11  E-value=0.16  Score=42.58  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             eeECCCCCEEEecCCCceeeecC
Q 013464          281 YVKLNPGQALYLGANEPHAYISG  303 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~G  303 (442)
                      .+.|++||+++||+|+.|.+-..
T Consensus        78 ~~~l~~GD~v~ip~g~~H~~~~~  100 (119)
T 3lwc_A           78 TVTAGPGEIVYMPKGETVTIRSH  100 (119)
T ss_dssp             EEEECTTCEEEECTTCEEEEEEE
T ss_pred             EEEECCCCEEEECCCCEEEEEcC
Confidence            56799999999999999998643

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=90.03  E-value=0.15  Score=41.13  Aligned_cols=22  Identities=14%  Similarity=0.138  Sum_probs=19.7

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      .+.++|||++++|+|++|++..
T Consensus        68 ~~~l~~Gd~~~ip~~~~H~~~~   89 (107)
T 2i45_A           68 SMTIREGEMAVVPKSVSHRPRS   89 (107)
T ss_dssp             EEEECTTEEEEECTTCCEEEEE
T ss_pred             EEEECCCCEEEECCCCcEeeEe
Confidence            4679999999999999999764

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=90.00  E-value=1  Score=46.58  Aligned_cols=73  Identities=16%  Similarity=0.171  Sum_probs=49.6

Q ss_pred             ceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeC----CcEE--EeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTA----SHND--AVAEGDVLFAPANTEINITT-SSKLQLYRAG  433 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~----~~~~--~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~  433 (442)
                      ..++.++.+.+|..... .......|++|++|++.+..-    ...+  .|++||+++||++....+.+ +.++.++.++
T Consensus       321 ~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G~~H~~~ng~~~~~~l~~~  400 (459)
T 2e9q_A          321 RLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFK  400 (459)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             ccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCCCEEEEEeCCCCeEEEEEe
Confidence            57888888877643221 112457999999999998642    2334  39999999999999844443 4456665555


Q ss_pred             c
Q 013464          434 V  434 (442)
Q Consensus       434 ~  434 (442)
                      .
T Consensus       401 ~  401 (459)
T 2e9q_A          401 T  401 (459)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=89.92  E-value=0.14  Score=41.78  Aligned_cols=21  Identities=5%  Similarity=0.022  Sum_probs=19.2

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.|+|||++++|+|++|++-
T Consensus        69 ~~~l~~GD~i~ip~g~~H~~~   89 (101)
T 1o5u_A           69 KYVIEKGDLVTFPKGLRCRWK   89 (101)
T ss_dssp             EEEEETTCEEEECTTCEEEEE
T ss_pred             EEEECCCCEEEECCCCcEEEE
Confidence            577999999999999999974

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=89.82  E-value=2.2  Score=35.37  Aligned_cols=60  Identities=20%  Similarity=0.356  Sum_probs=45.0

Q ss_pred             CCCCeeeccCCCCeEEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          371 PKGTSSVFPAVSGPSIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       371 ~~~~~~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      ++.+.+.+.+ ..+.+..|+.|+.++.-.+  +...++.|++|-|||+..+.++-.. ..-|.+
T Consensus        46 PGe~~YtF~T-~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF~VpanssF~lkv~~-~~~Y~C  107 (111)
T 3hqx_A           46 PTEQPLTFET-HVPERMEIISGECRVKIADSTESELFRAGQSFYVPGNSLFKIETDE-VLDYVC  107 (111)
T ss_dssp             CCSSCEEEEC-SSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECTTCEEEEECSS-CEEEEE
T ss_pred             ccccceEEcC-CCcEEEEEEEeEEEEEcCCcccCEEeCCCCEEEECCCCcEEEEECc-ceeEEE
Confidence            3333466654 6799999999999997644  5799999999999999998887643 333443

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=89.73  E-value=0.16  Score=41.80  Aligned_cols=21  Identities=38%  Similarity=0.597  Sum_probs=19.1

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ...|+|||+++||+|++|++.
T Consensus        75 ~~~l~~Gd~i~ip~~~~H~~~   95 (114)
T 3fjs_A           75 QRRLHQGDLLYLGAGAAHDVN   95 (114)
T ss_dssp             EEEECTTEEEEECTTCCEEEE
T ss_pred             EEEECCCCEEEECCCCcEEEE
Confidence            467999999999999999975

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=89.55  E-value=0.17  Score=40.20  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=19.8

Q ss_pred             eeeECCCCCEEEecCCCceeee
Q 013464          280 NYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ....+++||++++|+|++|.+.
T Consensus        59 ~~~~l~~Gd~~~~p~~~~H~~~   80 (97)
T 2fqp_A           59 VTSQLTRGVSYTRPEGVEHNVI   80 (97)
T ss_dssp             EEEEECTTCCEEECTTCEEEEE
T ss_pred             EEEEEcCCCEEEeCCCCcccCE
Confidence            3578999999999999999975

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=89.51  E-value=0.23  Score=44.92  Aligned_cols=55  Identities=15%  Similarity=0.161  Sum_probs=40.9

Q ss_pred             CeEEEEEEcCcEEEEe--CCcE--EEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCCC
Q 013464          383 GPSIFLVTDGEGSMLT--ASHN--DAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNSR  437 (442)
Q Consensus       383 ~~~il~v~~G~~~i~~--~~~~--~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~~  437 (442)
                      ...|.+|++|++.+..  +++.  +.+++||.++||++..-.+..  +..+..++.|.+.+
T Consensus       100 ~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~~  160 (179)
T 1zrr_A          100 EDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPE  160 (179)
T ss_dssp             SCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCGG
T ss_pred             hheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCCC
Confidence            4689999999998854  5554  569999999999999743433  33477777777655

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=89.35  E-value=0.21  Score=39.12  Aligned_cols=22  Identities=32%  Similarity=0.455  Sum_probs=19.6

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      .+.+++||++++|+|++|++..
T Consensus        68 ~~~l~~Gd~~~ip~~~~H~~~~   89 (105)
T 1v70_A           68 EALLAPGMAAFAPAGAPHGVRN   89 (105)
T ss_dssp             EEEECTTCEEEECTTSCEEEEC
T ss_pred             EEEeCCCCEEEECCCCcEEeEe
Confidence            5679999999999999999853

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=88.81  E-value=0.75  Score=47.61  Aligned_cols=72  Identities=15%  Similarity=0.096  Sum_probs=51.0

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--C--Cc------------------------------------
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--A--SH------------------------------------  401 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~--~~------------------------------------  401 (442)
                      -+++.|+.+.++.......++.+.+++|++|++.+..  .  .+                                    
T Consensus        49 gvs~~R~~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~h  128 (465)
T 3qac_A           49 GVSVIRRTIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQH  128 (465)
T ss_dssp             TCEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC------------------------------CCCC
T ss_pred             ceEEEEEEEcCCcCcccEEcCCCEEEEEEECcEEEEEecCCCCceeecchhccccccccccccccccccccccccccccc
Confidence            5888899998764332222478999999999997752  1  11                                    


Q ss_pred             --EEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464          402 --NDAVAEGDVLFAPANTEINITT--SSKLQLYRAG  433 (442)
Q Consensus       402 --~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~  433 (442)
                        ...+++||+++||++...-+.+  +.++.++..+
T Consensus       129 qk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~  164 (465)
T 3qac_A          129 QKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILI  164 (465)
T ss_dssp             CCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             cceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEE
Confidence              3489999999999999866665  3455555544

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=88.66  E-value=0.8  Score=44.20  Aligned_cols=55  Identities=9%  Similarity=0.195  Sum_probs=45.0

Q ss_pred             CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc-EEEEec---CcEEEEEEEcCCC
Q 013464          383 GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE-INITTS---SKLQLYRAGVNSR  437 (442)
Q Consensus       383 ~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~-~~i~~~---~~~~~~~a~~~~~  437 (442)
                      .=.+++.+.|.++|+.+++++.|..-++++||.+.+ +++.+.   .+++++++..|..
T Consensus        79 rE~~iV~l~G~~~V~vdG~~f~lg~~dalYVp~g~~~v~~as~da~~~a~fav~sAPa~  137 (282)
T 1xru_A           79 RELGVINIGGAGTITVDGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAH  137 (282)
T ss_dssp             EEEEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEECS
T ss_pred             cEEEEEEccCeEEEEECCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEccccC
Confidence            345677889999999999999999999999999997 777642   3588888877654

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=88.50  E-value=2.2  Score=38.21  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=42.0

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCC----cEEEeCcccEEEEcCCCc
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTAS----HNDAVAEGDVLFAPANTE  418 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~----~~~~l~~G~~~~Ipa~~~  418 (442)
                      ..+|.|.++.-+. .....-..++..++++++|+.+|...+    ..+.|+.||.++||+++.
T Consensus        33 d~~~~V~~v~Gpn-~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvp   94 (174)
T 1yfu_A           33 DSDFIVTVVGGPN-HRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVR   94 (174)
T ss_dssp             SCSEEEEEECSCB-CCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCC
T ss_pred             CCcEEEEEEcCCC-cCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCC
Confidence            3567777775321 112222346789999999999997532    389999999999999987

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=88.37  E-value=0.31  Score=39.21  Aligned_cols=21  Identities=19%  Similarity=0.210  Sum_probs=18.4

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.+++||++|||+|+.|.+.
T Consensus        60 ~~~l~~G~~~~ip~G~~H~~~   80 (98)
T 3lag_A           60 LAQLKTGRSYARKAGVQHDVR   80 (98)
T ss_dssp             CCCBCTTCCEEECTTCEEEEB
T ss_pred             EEEecCCcEEEEcCCCcEECE
Confidence            345899999999999999975

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=88.30  E-value=1.7  Score=44.93  Aligned_cols=74  Identities=14%  Similarity=0.074  Sum_probs=52.2

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--C---C------------------------------------
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--A---S------------------------------------  400 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~---~------------------------------------  400 (442)
                      .+++.++++..+.-.-....+.+.+++|++|.+++..  .   .                                    
T Consensus        42 gvs~~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (466)
T 3kgl_A           42 GVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQ  121 (466)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC------------------------
T ss_pred             CeEEEEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhccccccccccccccccccccccccccccccccc
Confidence            6999999998764322222357899999999987741  1   0                                    


Q ss_pred             -----------------------cEEEeCcccEEEEcCCCcEEEEec--CcEEEEEEEcC
Q 013464          401 -----------------------HNDAVAEGDVLFAPANTEINITTS--SKLQLYRAGVN  435 (442)
Q Consensus       401 -----------------------~~~~l~~G~~~~Ipa~~~~~i~~~--~~~~~~~a~~~  435 (442)
                                             +...|++||++.|||++...+.+.  .++.++....+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~  181 (466)
T 3kgl_A          122 GQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDL  181 (466)
T ss_dssp             -----------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEES
T ss_pred             cccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEcC
Confidence                                   014899999999999998777763  45666665533

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=88.12  E-value=0.25  Score=39.50  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=19.5

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ...+++||+++||+|++|++..
T Consensus        63 ~~~l~~Gd~~~i~~~~~H~~~~   84 (113)
T 2gu9_A           63 TQALQAGSLIAIERGQAHEIRN   84 (113)
T ss_dssp             EEEECTTEEEEECTTCCEEEEC
T ss_pred             EEEeCCCCEEEECCCCcEEeEc
Confidence            4679999999999999999763

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=88.06  E-value=0.22  Score=39.72  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.3

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ...+++||++++|+|++|++..
T Consensus        75 ~~~l~~Gd~~~ip~~~~H~~~~   96 (110)
T 2q30_A           75 VIPAPRGAVLVAPISTPHGVRA   96 (110)
T ss_dssp             EEEECTTEEEEEETTSCEEEEE
T ss_pred             EEEECCCCEEEeCCCCcEEEEE
Confidence            4679999999999999999653

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=88.00  E-value=0.29  Score=39.64  Aligned_cols=22  Identities=14%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ...++|||++++|+|++|++..
T Consensus        73 ~~~l~~Gd~~~ip~~~~H~~~~   94 (116)
T 2pfw_A           73 IKVLTAGDSFFVPPHVDHGAVC   94 (116)
T ss_dssp             EEEECTTCEEEECTTCCEEEEE
T ss_pred             EEEeCCCCEEEECcCCceeeEe
Confidence            4679999999999999999753

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=87.99  E-value=0.89  Score=39.34  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=38.0

Q ss_pred             CCeEEEEEEcCcEEEEeC--------CcEEEeCcccEEEEcCCCcEEEEecCcEEEEE
Q 013464          382 SGPSIFLVTDGEGSMLTA--------SHNDAVAEGDVLFAPANTEINITTSSKLQLYR  431 (442)
Q Consensus       382 ~~~~il~v~~G~~~i~~~--------~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~  431 (442)
                      +.-.+++|++|+.+|...        ...+.+++|+.+.||.++.-+-..+....++.
T Consensus        49 ~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e~~vLL  106 (140)
T 3d0j_A           49 STDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMY  106 (140)
T ss_dssp             SCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTTCEEEE
T ss_pred             CCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCceEEEE
Confidence            467899999999999765        34799999999999999984444444444443

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=87.83  E-value=0.21  Score=39.34  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ...+++||+++||+|++|++..
T Consensus        69 ~~~l~~Gd~~~ip~~~~H~~~~   90 (102)
T 3d82_A           69 NITLQAGEMYVIPKGVEHKPMA   90 (102)
T ss_dssp             EEEEETTEEEEECTTCCBEEEE
T ss_pred             EEEEcCCCEEEECCCCeEeeEc
Confidence            5679999999999999999754

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=87.69  E-value=1.9  Score=34.73  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=39.3

Q ss_pred             eeccCCCCeEEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEec
Q 013464          376 SVFPAVSGPSIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITTS  424 (442)
Q Consensus       376 ~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~~  424 (442)
                      +.+.+ ..+.+..|++|+.++.-.+  +...++.|++|.|||+..+.++-.
T Consensus        35 ytF~T-~~~E~M~vvsG~~~V~lpg~~ew~~~~aGesF~Vpans~F~l~v~   84 (94)
T 2oyz_A           35 YTFGT-QAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVK   84 (94)
T ss_dssp             EEEEE-SSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEES
T ss_pred             EEEcC-CCeEEEEEEEeEEEEEcCCCCcCEEECCCCEEEECCCCEEEEEEc
Confidence            45443 5789999999999997643  479999999999999998888764

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=87.35  E-value=1.6  Score=45.68  Aligned_cols=72  Identities=14%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             ceEEEEEEeCCCCeeeccC-CCCeEEEEEEcCcEEEEe-C--Cc---EEEeCcccEEEEcCCCc-EEEEecCcEEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVFPA-VSGPSIFLVTDGEGSMLT-A--SH---NDAVAEGDVLFAPANTE-INITTSSKLQLYRAG  433 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~-~~~~~il~v~~G~~~i~~-~--~~---~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~  433 (442)
                      ..++.++.+.++.....-. .....+++|++|++++.. +  +.   +..|++||+++||++.. +...++.++.+ .++
T Consensus       393 giS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G~~H~~~ag~e~l~f-laF  471 (531)
T 3fz3_A          393 RLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEY-FAF  471 (531)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEE-EEE
T ss_pred             ceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCCCeEEEecCCCCEEE-EEE
Confidence            4688889998775432211 235789999999999864 2  22   56899999999999997 44433334444 466


Q ss_pred             c
Q 013464          434 V  434 (442)
Q Consensus       434 ~  434 (442)
                      .
T Consensus       472 ~  472 (531)
T 3fz3_A          472 K  472 (531)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=87.29  E-value=0.24  Score=40.46  Aligned_cols=20  Identities=15%  Similarity=0.205  Sum_probs=18.1

Q ss_pred             ECCCCCEEEecCCCceeeec
Q 013464          283 KLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       283 ~l~pGd~i~ipaGt~HAy~~  302 (442)
                      .+++||+++||+|++|++..
T Consensus        69 ~l~~Gd~i~ip~~~~H~~~~   88 (117)
T 2b8m_A           69 NYKEGNIVYVPFNVKMLIQN   88 (117)
T ss_dssp             EEETTCEEEECTTCEEEEEC
T ss_pred             EeCCCCEEEECCCCcEEeEc
Confidence            68999999999999999753

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=86.98  E-value=0.23  Score=40.94  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=18.9

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.+++||++++|+|++|++.
T Consensus        80 ~~~l~~Gd~~~i~~~~~H~~~  100 (125)
T 3h8u_A           80 VTHLKAGDIAIAKPGQVHGAM  100 (125)
T ss_dssp             EEEEETTEEEEECTTCCCEEE
T ss_pred             EEEeCCCCEEEECCCCEEEeE
Confidence            467999999999999999975

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=86.92  E-value=0.34  Score=40.75  Aligned_cols=23  Identities=26%  Similarity=0.790  Sum_probs=20.0

Q ss_pred             eeeECCCCCEEEecCCCceeeec
Q 013464          280 NYVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ..+.+++||++++|+|++|++..
T Consensus        79 ~~~~l~~Gd~~~ip~~~~H~~~~  101 (145)
T 3ht1_A           79 RTEEVGPGEAIFIPRGEPHGFVT  101 (145)
T ss_dssp             EEEEECTTCEEEECTTCCBEEEC
T ss_pred             EEEEECCCCEEEECCCCeEEeEc
Confidence            35779999999999999999753

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=86.52  E-value=0.34  Score=39.91  Aligned_cols=21  Identities=24%  Similarity=0.200  Sum_probs=19.1

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ...+++||+++||+|++|++.
T Consensus        80 ~~~l~~Gd~~~ip~~~~H~~~  100 (126)
T 4e2g_A           80 TRVLRPGMAYTIPGGVRHRAR  100 (126)
T ss_dssp             EEEECTTEEEEECTTCCEEEE
T ss_pred             EEEeCCCCEEEECCCCcEEeE
Confidence            467999999999999999985

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=86.50  E-value=0.46  Score=42.45  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             ceeeECCCCCEEEecCCCceeee
Q 013464          279 FNYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       279 Ln~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .....|++||++++|+|++|.+.
T Consensus        82 ~~~~~l~~GDv~~~P~g~~H~~~  104 (178)
T 1dgw_A           82 RDTYKLDQGDAIKIQAGTPFYLI  104 (178)
T ss_dssp             EEEEEEETTEEEEECTTCCEEEE
T ss_pred             cEEEEECCCCEEEECCCCeEEEE
Confidence            56789999999999999999975

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=86.48  E-value=4.1  Score=36.49  Aligned_cols=61  Identities=18%  Similarity=0.198  Sum_probs=43.7

Q ss_pred             EEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC--C------cEEEeCcccEEEEcCCCc
Q 013464          354 TRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA--S------HNDAVAEGDVLFAPANTE  418 (442)
Q Consensus       354 ~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~--~------~~~~l~~G~~~~Ipa~~~  418 (442)
                      .++.   .+|.|.++.-+.. ....-......++++++|+..|...  +      ..+.|+.||.|++|+++.
T Consensus        29 ~v~~---~~~~V~~vgGPn~-r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvp   97 (176)
T 1zvf_A           29 CLHK---GGFTVMIVGGPNE-RTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVP   97 (176)
T ss_dssp             EEEC---SSEEEEEECSSBC-CSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCC
T ss_pred             EEec---CCEEEEEEcCCCc-CCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCC
Confidence            4554   4788877753212 1222234678999999999999642  3      379999999999999987

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=86.39  E-value=0.33  Score=39.24  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=19.4

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ...+++||++++|+|++|++..
T Consensus        79 ~~~l~~Gd~~~ip~~~~H~~~~  100 (115)
T 1yhf_A           79 TYRVAEGQTIVMPAGIPHALYA  100 (115)
T ss_dssp             EEEEETTCEEEECTTSCEEEEE
T ss_pred             EEEECCCCEEEECCCCCEEEEE
Confidence            4679999999999999999754

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=86.18  E-value=0.32  Score=42.75  Aligned_cols=23  Identities=9%  Similarity=0.255  Sum_probs=19.9

Q ss_pred             eeeECCCCCEEEecCCCceeeec
Q 013464          280 NYVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ..+.++|||++|||+|+.|.+-.
T Consensus       102 ~~~~l~~GD~i~iP~G~~h~~~n  124 (151)
T 4axo_A          102 RKVSASSGELIFIPKGSKIQFSV  124 (151)
T ss_dssp             EEEEEETTCEEEECTTCEEEEEE
T ss_pred             EEEEEcCCCEEEECCCCEEEEEe
Confidence            35679999999999999999753

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=86.08  E-value=4.1  Score=42.46  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=46.0

Q ss_pred             eEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe--C-Cc-E--EEeCcccEEEEcCCCc-EEEEecCcEEEEEE
Q 013464          363 FEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT--A-SH-N--DAVAEGDVLFAPANTE-INITTSSKLQLYRA  432 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~--~-~~-~--~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a  432 (442)
                      .++.++.+.++.-... .......|++|++|++.+..  . +. .  ..|++||+++||++.. +...++.++.++..
T Consensus       358 iS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~a~~e~~~~l~f  435 (496)
T 3ksc_A          358 LSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAF  435 (496)
T ss_dssp             CEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEE
T ss_pred             eeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEECCCCEEEEEeCCCCEEEEEE
Confidence            3778888876643221 11245789999999998853  2 22 3  3499999999999998 44333444555443

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=85.98  E-value=0.33  Score=40.58  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=20.2

Q ss_pred             eeeECCCCCEEEecCCCceeeec
Q 013464          280 NYVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ..+.+++||+++||+|++|.+..
T Consensus        83 ~~~~l~~Gd~~~ip~g~~H~~~~  105 (134)
T 2o8q_A           83 GAVMLEAGGSAFQPPGVRHRELR  105 (134)
T ss_dssp             EEEEEETTCEEECCTTCCEEEEE
T ss_pred             EEEEecCCCEEEECCCCcEEeEe
Confidence            45779999999999999999864

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=85.12  E-value=0.39  Score=40.98  Aligned_cols=21  Identities=5%  Similarity=0.211  Sum_probs=19.1

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.+++||++++|+|++|.+-
T Consensus        94 ~~~l~~GD~i~~p~g~~h~~~  114 (133)
T 2pyt_A           94 TMIAKAGDVMFIPKGSSIEFG  114 (133)
T ss_dssp             EEEEETTCEEEECTTCEEEEE
T ss_pred             EEEECCCcEEEECCCCEEEEE
Confidence            457999999999999999985

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=85.04  E-value=3.2  Score=42.93  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=47.5

Q ss_pred             ceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe--C-Cc---EEEeCcccEEEEcCCCc-EEEEecCcEEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT--A-SH---NDAVAEGDVLFAPANTE-INITTSSKLQLYRAG  433 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~--~-~~---~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~  433 (442)
                      ..++.++.+.++.-... .......+++|++|++.+..  . +.   ...|++||+++||++.. +...+++++.++..+
T Consensus       322 giS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~ag~e~~~~l~~f  401 (466)
T 3kgl_A          322 RLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFK  401 (466)
T ss_dssp             TCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEE
T ss_pred             ceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEEECCCCeEEEEcCCCCEEEEEEE
Confidence            46778888876643221 11245689999999998863  2 22   33599999999999998 433334455655544

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=84.72  E-value=0.39  Score=39.69  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=19.5

Q ss_pred             eeeECCCCCEEEecCCCceeee
Q 013464          280 NYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ....++|||+++||+|++|++.
T Consensus        66 ~~~~l~~Gd~i~i~~~~~H~~~   87 (125)
T 3cew_A           66 EKIELQAGDWLRIAPDGKRQIS   87 (125)
T ss_dssp             EEEEEETTEEEEECTTCCEEEE
T ss_pred             EEEEeCCCCEEEECCCCcEEEE
Confidence            3567999999999999999975

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=84.60  E-value=3.1  Score=34.14  Aligned_cols=48  Identities=15%  Similarity=0.208  Sum_probs=39.4

Q ss_pred             eeeccCCCCeEEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEe
Q 013464          375 SSVFPAVSGPSIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       375 ~~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      .+.+.+ ..+.+..|++|+.++.-.+  +...++.|++|.|||+..+.++-
T Consensus        47 eY~F~T-~~~E~MevvsG~l~V~LpG~~eW~~~~aGesF~VpanssF~lkv   96 (106)
T 3eo6_A           47 VYTLSS-EVAETIRVLSGMAYYHAEGANDVQELHAGDSMVIPANQSYRLEV   96 (106)
T ss_dssp             EEEECC-SSCEEEEEEEEEEEEECTTCSSCEEEETTCEEEECSSSCEEEEE
T ss_pred             EEEecC-CCcEEEEEEEeEEEEECCCCccCEEECCCCEEEECCCCcEEEEE
Confidence            355543 6799999999999998644  57999999999999999987764

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=84.54  E-value=0.46  Score=41.33  Aligned_cols=22  Identities=14%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             eeeECCCCCEEEecCCCceeee
Q 013464          280 NYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ..+.+++||+++||+|++|.+.
T Consensus        88 ~~~~l~~Gd~i~ip~~~~H~~~  109 (163)
T 1lr5_A           88 QEIPFFQNTTFSIPVNDPHQVW  109 (163)
T ss_dssp             EEEEECTTEEEEECTTCCEEEE
T ss_pred             EEEEeCCCCEEEECCCCcEEeE
Confidence            5678999999999999999975

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=84.48  E-value=0.41  Score=41.07  Aligned_cols=20  Identities=15%  Similarity=0.036  Sum_probs=18.6

Q ss_pred             eECCCCCEEEecCCCceeee
Q 013464          282 VKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       282 v~l~pGd~i~ipaGt~HAy~  301 (442)
                      +.|++||+++||+|++|.+.
T Consensus        90 ~~l~~Gd~i~ip~g~~H~~~  109 (148)
T 2oa2_A           90 EEVFDDYAILIPAGTWHNVR  109 (148)
T ss_dssp             EEEETTCEEEECTTCEEEEE
T ss_pred             EEECCCCEEEECCCCcEEEE
Confidence            67999999999999999975

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=84.45  E-value=0.42  Score=40.29  Aligned_cols=21  Identities=10%  Similarity=0.145  Sum_probs=18.8

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.|++||++++|+|++|.+-
T Consensus        88 ~~~l~~GD~~~ip~g~~h~~~  108 (123)
T 3bcw_A           88 VHAVKAGDAFIMPEGYTGRWE  108 (123)
T ss_dssp             EEEEETTCEEEECTTCCCEEE
T ss_pred             EEEECCCCEEEECCCCeEEEE
Confidence            467999999999999999974

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=84.39  E-value=0.41  Score=43.73  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.2

Q ss_pred             eeECCCCCEEEecCCCceeeecC
Q 013464          281 YVKLNPGQALYLGANEPHAYISG  303 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~G  303 (442)
                      .+.+++||.|+||+|++|.+..+
T Consensus       128 ~i~v~~GDlIiIPaG~~H~f~~~  150 (191)
T 1vr3_A          128 RISMEKGDMITLPAGIYHRFTLD  150 (191)
T ss_dssp             EEEEETTEEEEECTTCCEEEEEC
T ss_pred             EEEECCCCEEEECcCCcCCcccC
Confidence            46899999999999999987654

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=84.38  E-value=0.53  Score=42.13  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=20.0

Q ss_pred             eeeECCCCCEEEecCCCceeee
Q 013464          280 NYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ..+.|++||++|+|+|++|++.
T Consensus       162 ~~~~l~~GD~~~~~~~~~H~~~  183 (198)
T 2bnm_A          162 KEALLPTGASMFVEEHVPHAFT  183 (198)
T ss_dssp             EEEEECTTCEEEECTTCCEEEE
T ss_pred             ccEEECCCCEEEeCCCCceEEE
Confidence            4678999999999999999976

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=84.34  E-value=0.47  Score=39.13  Aligned_cols=21  Identities=14%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.+++||+++||+|++|++.
T Consensus        73 ~~~l~~Gd~~~i~~~~~H~~~   93 (128)
T 4i4a_A           73 DFPVTKGDLIIIPLDSEHHVI   93 (128)
T ss_dssp             EEEEETTCEEEECTTCCEEEE
T ss_pred             EEEECCCcEEEECCCCcEEeE
Confidence            567999999999999999975

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=84.20  E-value=0.55  Score=41.47  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=19.0

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.|++||+++||+|++|.+.
T Consensus        95 ~~~l~~Gd~i~ip~~~~H~~~  115 (167)
T 3ibm_A           95 VEPLTPLDCVYIAPHAWHQIH  115 (167)
T ss_dssp             EEEECTTCEEEECTTCCEEEE
T ss_pred             EEEECCCCEEEECCCCcEEEE
Confidence            567999999999999999975

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=84.12  E-value=0.57  Score=39.93  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             eeeECCCCCEEEecCCCceeeec
Q 013464          280 NYVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      +...+++||.++||+|++|.+..
T Consensus        56 ~~~~l~~Gd~~~i~p~~~H~~~~   78 (164)
T 2arc_A           56 REFVCRPGDILLFPPGEIHHYGR   78 (164)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEE
T ss_pred             EEEEecCCeEEEEcCCCCEEEEe
Confidence            56789999999999999999764

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=84.07  E-value=0.48  Score=41.55  Aligned_cols=21  Identities=10%  Similarity=0.256  Sum_probs=19.1

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ...|+|||+++||+|++|++.
T Consensus        83 ~~~l~~Gd~i~ip~~~~H~~~  103 (156)
T 3kgz_A           83 ISDVAQGDLVFIPPMTWHQFR  103 (156)
T ss_dssp             EEEEETTCEEEECTTCCEEEE
T ss_pred             EEEeCCCCEEEECCCCcEEeE
Confidence            567999999999999999975

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=83.83  E-value=0.59  Score=41.43  Aligned_cols=21  Identities=10%  Similarity=0.066  Sum_probs=19.2

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ...+++||+++||+|++|.+.
T Consensus        92 ~~~l~~GD~i~ip~g~~H~~~  112 (166)
T 3jzv_A           92 VSAVAPYDLVTIPGWSWHQFR  112 (166)
T ss_dssp             EEEECTTCEEEECTTCCEEEE
T ss_pred             EEEeCCCCEEEECCCCcEEeE
Confidence            567999999999999999985

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=83.78  E-value=4.1  Score=42.05  Aligned_cols=71  Identities=10%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             eEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe--C-Cc-E--EEeCcccEEEEcCCCc-EEEEecCcEEEEEEE
Q 013464          363 FEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT--A-SH-N--DAVAEGDVLFAPANTE-INITTSSKLQLYRAG  433 (442)
Q Consensus       363 F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~--~-~~-~--~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~  433 (442)
                      .++.++.+.++.-... .......|++|++|++.+..  . +. .  ..|++||+++||.+.. +...+++++.++..+
T Consensus       323 iS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP~g~~h~~~ag~e~~~~l~f~  401 (465)
T 3qac_A          323 LSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFK  401 (465)
T ss_dssp             CEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             eeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEECCCcEEEEEcCCCCeEEEEEe
Confidence            4778888877643221 11245789999999998853  2 22 3  3499999999999997 444344455555433

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=83.46  E-value=0.56  Score=41.84  Aligned_cols=22  Identities=23%  Similarity=0.611  Sum_probs=19.5

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      .+.|++||++|+|+|++|++..
T Consensus       145 ~~~l~~GD~i~i~~~~~H~~~n  166 (192)
T 1y9q_A          145 WHELQQGEHIRFFSDQPHGYAA  166 (192)
T ss_dssp             EEEECTTCEEEEECSSSEEEEE
T ss_pred             EEEeCCCCEEEEcCCCCeEeEC
Confidence            4579999999999999999864

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=82.88  E-value=0.5  Score=39.31  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ...+++||++++|+|++|++..
T Consensus        87 ~~~l~~Gd~i~ip~g~~H~~~~  108 (126)
T 1vj2_A           87 EETVEEGFYIFVEPNEIHGFRN  108 (126)
T ss_dssp             EEEEETTEEEEECTTCCEEEEC
T ss_pred             EEEECCCCEEEECCCCcEEeEe
Confidence            4679999999999999999863

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=82.80  E-value=0.69  Score=41.71  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.4

Q ss_pred             eECCCCCEEEecCCCceeeecC
Q 013464          282 VKLNPGQALYLGANEPHAYISG  303 (442)
Q Consensus       282 v~l~pGd~i~ipaGt~HAy~~G  303 (442)
                      +.+++||.|+||+|++|....+
T Consensus       124 ~~l~~GDli~IP~g~~H~~~~~  145 (179)
T 1zrr_A          124 VLCEKNDLISVPAHTPHWFDMG  145 (179)
T ss_dssp             EECCCSCEEEECTTCCBCCCCS
T ss_pred             EEECCCCEEEECCCCeEeeecC
Confidence            6699999999999999987654

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=82.05  E-value=0.63  Score=42.43  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=18.7

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.|+|||++|||+|-.|...
T Consensus       202 ~~~l~pGD~LyiP~gW~H~V~  222 (235)
T 4gjz_A          202 SCILSPGEILFIPVKYWHYVR  222 (235)
T ss_dssp             EEEECTTCEEEECTTCEEEEE
T ss_pred             EEEECCCCEEEeCCCCcEEEE
Confidence            578999999999999999843

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=81.89  E-value=0.56  Score=39.49  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             eeECCCCCEEEecCCCceeeec
Q 013464          281 YVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      ...|+|||++++|+|++|++..
T Consensus        97 ~~~l~~Gd~i~i~~~~~H~~~n  118 (133)
T 1o4t_A           97 DVPIKAGDVCFTDSGESHSIEN  118 (133)
T ss_dssp             EEEEETTEEEEECTTCEEEEEC
T ss_pred             EEEeCCCcEEEECCCCcEEeEE
Confidence            5679999999999999999763

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=81.78  E-value=0.59  Score=44.06  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             ceeeECCCCCEEEecCCCceeee
Q 013464          279 FNYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       279 Ln~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ...+.++|||++|+|+|++|++.
T Consensus       101 ~~~~~l~~GD~i~iP~g~~H~~~  123 (239)
T 2xlg_A          101 LYSIQSEPKQLIYSPNHYMHGFV  123 (239)
T ss_dssp             EEEEECCTTEEEEECTTEEEEEE
T ss_pred             eeEEEECCCCEEEECCCCCEEEE
Confidence            34678999999999999999976

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=81.57  E-value=0.81  Score=39.62  Aligned_cols=21  Identities=14%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             eeECCCCCEEEecCC-Cceeee
Q 013464          281 YVKLNPGQALYLGAN-EPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaG-t~HAy~  301 (442)
                      .+.+++||++++|+| ++|.+-
T Consensus        87 ~~~l~~Gd~i~i~~~~~~H~~~  108 (162)
T 3l2h_A           87 QYPIAPGDFVGFPCHAAAHSIS  108 (162)
T ss_dssp             EEEECTTCEEEECTTSCCEEEE
T ss_pred             EEEeCCCCEEEECCCCceEEeE
Confidence            567999999999998 999975

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=81.52  E-value=0.83  Score=42.45  Aligned_cols=25  Identities=36%  Similarity=0.493  Sum_probs=21.3

Q ss_pred             eeeECCCCCEEEecCCCceeeecCc
Q 013464          280 NYVKLNPGQALYLGANEPHAYISGE  304 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~G~  304 (442)
                      +.+.++|||++|+|+|++||.-.++
T Consensus       171 ~~~~l~pGd~v~ipsgv~Ha~rt~d  195 (217)
T 4b29_A          171 PDLMLEPGQTRFHPANAPHAMTTLT  195 (217)
T ss_dssp             CCEEECTTCEEEECTTCCEEEECCS
T ss_pred             CEEecCCCCEEEcCCCCceeEEECC
Confidence            3578999999999999999976554

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=81.02  E-value=20  Score=32.73  Aligned_cols=82  Identities=6%  Similarity=-0.039  Sum_probs=57.4

Q ss_pred             EEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe-----------CCcEEEeCcccEEEEcCCCc--EE
Q 013464          354 TRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT-----------ASHNDAVAEGDVLFAPANTE--IN  420 (442)
Q Consensus       354 ~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~-----------~~~~~~l~~G~~~~Ipa~~~--~~  420 (442)
                      .+|..|...|.+..+...+|+...+-.+...+++.|++|+.+...           .+.+..+..|+++.+++..+  -+
T Consensus        70 lL~~dp~~~~~v~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~  149 (208)
T 2gm6_A           70 LLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHR  149 (208)
T ss_dssp             EEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEE
T ss_pred             EeecCCCCCEEEEEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEE
Confidence            467766678999999988776544334556889999999987642           12468899999999999433  45


Q ss_pred             EEe---cCcEEEEEEEcC
Q 013464          421 ITT---SSKLQLYRAGVN  435 (442)
Q Consensus       421 i~~---~~~~~~~~a~~~  435 (442)
                      +.+   ++....+-+|.+
T Consensus       150 V~N~~~~~~avsLHvY~~  167 (208)
T 2gm6_A          150 VHNAYDDRVSISIHVYGA  167 (208)
T ss_dssp             EEESCSSSCEEEEEEESS
T ss_pred             eccCCCCCcEEEEEEEcC
Confidence            553   234555656654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	442
d1pmia_	440	b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Can	1e-123
d1qwra_	315	b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {	1e-26
d1qwra_	315	b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {	3e-18
d1zx5a1	299	b.82.1.3 (A:1-299) Putative mannosephosphate isome	1e-24
d1zx5a1	299	b.82.1.3 (A:1-299) Putative mannosephosphate isome	3e-20
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	0.002

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]} Length = 440

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

 Score =  364 bits (934), Expect = e-123
 Identities = 167/459 (36%), Positives = 228/459 (49%), Gaps = 52/459 (11%)

Query: 7   AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGL-NSGKRTDIDKPYAEFWMGTHESGPSFL 65
           ++ +L R+ C  Q YDWG+ GS S V++     +     D  KPYAE WMGTH S PS  
Sbjct: 1   SSEKLFRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKA 60

Query: 66  AKKGGAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLFK 122
                                      +L+  +   P   LG+ ++ ++G   +LPFLFK
Sbjct: 61  IDLNN---------------------QTLRDLVTAKPQEYLGESIITKFGSSKELPFLFK 99

Query: 123 VLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKS 182
           VLS+ K LSIQAHPDK+L   LH   P  Y DDNHKPEMA+A+T+FE  C F  L +L  
Sbjct: 100 VLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAK 159

Query: 183 VLQNVPEIVELVGSEEANRVLH------VEMQDGEEKAKFVLQSIFTNLMTASMEMTTKA 236
            L  VPE+ E++G E  +  +             +   + +LQ +F  LM    ++  + 
Sbjct: 160 TLATVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQ 219

Query: 237 TTKLKSRLHKESQVRPLTEKE--QLVLRLEKQYPADIGVI-AAFFFNYVKLNPGQALYLG 293
           T KL  R  +E QV    +    +L+ RL KQ+P DIG+       N+V LN G+A++L 
Sbjct: 220 TAKLLERTDREPQVFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQ 279

Query: 294 ANEPHAYISGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPL---- 349
           A +PHAYISG+ IECMA SDNVVRAG TPK +DV+ L  MLTY     E  K        
Sbjct: 280 AKDPHAYISGDIIECMAASDNVVRAGFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPR 339

Query: 350 ----SPYITRYLPPFDEFEVDCCILP--KGTSSVFPAVSGPSIFLVTDGEGSMLTASHND 403
               +     Y PP  EF V   I    KG   V   ++GPSI + T+G+G++     + 
Sbjct: 340 SKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDS 399

Query: 404 A---VAEGDVLFAPANTEINITTSSK-----LQLYRAGV 434
               +  G V F    + I +T  S         YRA V
Sbjct: 400 TKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFV 438

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]} Length = 315

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

 Score =  107 bits (267), Expect = 1e-26
 Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 20/191 (10%)

Query: 254 TEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGE-CIECMATS 312
             K +LV  +                  +K+ PG   Y+ +   HA   G   +E    S
Sbjct: 135 RSKTELVTMINSGDWEG-------LLRRIKIKPGDFYYVPSGTLHALCKGALVLETQQNS 187

Query: 313 DNVVR--------AGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITR-YLPPFDEF 363
           D   R        +  +P+        +  T       I +       IT       + F
Sbjct: 188 DATYRVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGYIDESTESRKGITIKTFVQGEYF 247

Query: 364 EVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT 423
            V    +     +         I  V +G G +        + +GD    PA    + T 
Sbjct: 248 SVYKWDI--NGEAEMAQDESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMP-DFTI 304

Query: 424 SSKLQLYRAGV 434
                L  + +
Sbjct: 305 KGTCTLIVSHI 315

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]} Length = 315

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

 Score = 83.2 bits (205), Expect = 3e-18
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 52/205 (25%)

Query: 12  LRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFW-MGTHESGPSFLAKKGG 70
           + LT   ++  WG T     +   +G +        +   E W +  H  GPS +A    
Sbjct: 5   IFLTPVFKEKIWGGT----ALRDRFGYSIP-----SESTGECWAISAHPKGPSTVA---- 51

Query: 71  AGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKAL 130
                           G  +  +L     ++     +      G   P L K+L V +  
Sbjct: 52  ---------------NGPYKGKTLIELWEEHR----EVFGGVEGDRFPLLTKLLDVKEDT 92

Query: 131 SIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAIT---EFEALCSFISLQELKSVLQNV 187
           SI+ HPD   A           + +  K E    I      E +    +        ++ 
Sbjct: 93  SIKVHPDDYYAGENE-------EGELGKTECWYIIDCKENAEIIYGHTA--------RSK 137

Query: 188 PEIVELVGSEEANRVLH-VEMQDGE 211
            E+V ++ S +   +L  ++++ G+
Sbjct: 138 TELVTMINSGDWEGLLRRIKIKPGD 162

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 299

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  100 bits (251), Expect = 1e-24
 Identities = 25/182 (13%), Positives = 55/182 (30%), Gaps = 19/182 (10%)

Query: 251 RPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGECIECMA 310
           +   + E+L  +L+++             N  +  P     +    PHA      +E  +
Sbjct: 133 KEDVKIEELEEKLKEEDFD-----FKTLLNTFETTPYDTFVIRPGIPHAGEGLRVLEVSS 187

Query: 311 TSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCIL 370
            S             D + +  +L  K+     +KG        + +   + F ++   +
Sbjct: 188 NSTLAYF----FNENDWEKVKKVLNTKKVEEFEVKG-------KKGMAETENFGLEVVDV 236

Query: 371 PKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLY 430
                         +I    +G    L       +  G     PA+T+     S + ++ 
Sbjct: 237 TGTAE--IKTGGVMNILYAAEGYFI-LRGKETADLHRGYSCLVPASTDSFTVESERGKIV 293

Query: 431 RA 432
           R 
Sbjct: 294 RI 295

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 299

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 88.6 bits (219), Expect = 3e-20
 Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 40/180 (22%)

Query: 11  LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFW-MGTHESGPSFLAKKG 69
           + +   ++ +  WG       ++ L G              E W    H S PS +  KG
Sbjct: 7   IFQAQENLVERPWGGE----WIALLKGFRQS-------GIGESWEFSAHTSRPSTVLVKG 55

Query: 70  GAGGVAGAVVNGSSANGGCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKA 129
                                 +S+     K+ + L  +         P L +++  A  
Sbjct: 56  QQ--------------------LSMIELFSKHRDELLGRA-AEKFSKFPILVRLIDAASP 94

Query: 130 LSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEALCSFISLQELKSVLQNVPE 189
             +  HP  + A++L        + +       L   + +A   F    +++ + + + E
Sbjct: 95  TQVHVHPSDKAAESLG-------EAEGGVESAWLVFNKGKAYAGFKEDVKIEELEEKLKE 147

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 37.8 bits (87), Expect = 0.002
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 369 ILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQ 428
            L  GT +      G ++F V +G G+++       + +GD+   P+    ++   ++  
Sbjct: 269 RLRAGTETATRNEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQAETQFD 328

Query: 429 LYRA 432
           L+R 
Sbjct: 329 LFRF 332

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	100.0
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	100.0
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	100.0
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.25
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.17
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.14
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.04
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	97.99
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	97.97
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	97.94
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	97.93
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	97.8
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	97.71
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	97.62
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	97.62
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	97.62
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	97.61
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	97.16
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	97.14
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	97.1
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	96.99
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	96.96
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	96.14
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	96.11
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	96.03
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	96.02
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	95.84
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	95.81
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	95.73
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	95.73
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	95.67
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	95.49
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	95.48
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	95.07
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	94.92
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	94.9
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	94.46
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	94.27
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	93.84
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	93.77
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	93.73
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	93.46
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	93.36
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	93.3
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	93.21
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	92.89
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	92.68
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	90.87
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	90.63
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	90.11
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	90.1
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	90.1
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	89.89
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	89.37
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	88.58
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	88.58
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	88.33
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	87.56
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	87.44
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	86.89
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	86.49
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	86.34
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	86.21
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	85.7
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	84.91
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	84.75
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	83.8
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	83.42
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	83.02
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	82.63
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	81.27
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	80.66

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=100.00  E-value=2e-98  Score=779.60  Aligned_cols=407  Identities=41%  Similarity=0.690  Sum_probs=354.2

Q ss_pred             cccEEeeccccccccCCCCCchHHHHHhcC-CCCCCCCCCCCceeeeeeecCCCCeEEecCCCCCccccccccCCCCCCC
Q 013464            9 RRLLRLTCSVQKYDWGRTGSDSLVSKLYGL-NSGKRTDIDKPYAEFWMGTHESGPSFLAKKGGAGGVAGAVVNGSSANGG   87 (442)
Q Consensus         9 ~~~~~l~p~~~~y~WG~~~~~sll~~l~~~-~~~~~~~~~~p~aE~W~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~   87 (442)
                      .+|++|+|.+|+|+||++|+.|+|++|++. .+++++++++||||+|||+||++||+|.++.                  
T Consensus         3 ~~~~~l~~~~q~Y~WG~~g~~s~i~~l~~~~~~~~~~~~~~P~AElW~g~Hp~~pS~v~~g~------------------   64 (440)
T d1pmia_           3 EKLFRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDLN------------------   64 (440)
T ss_dssp             SSEEEEEECEECCTTBEEGGGSHHHHHHHHHCTTSCCCTTSEECEEEESCCTTSCEEETTTT------------------
T ss_pred             CceEeccCCcccCCCCCCCchhHHHHHhccCCCccccCCCCEEEEEEeeeCCCCceeeecCC------------------
Confidence            579999999999999999999999999843 4578888899999999999999999997642                  


Q ss_pred             CCccccHHHHHhhCCC-cCCchhhhhcCC--CCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEE
Q 013464           88 CGEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALA  164 (442)
Q Consensus        88 ~~~~~~L~~li~~~p~-~lG~~~~~~~g~--~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~a  164 (442)
                         +++|.++|++||+ +||+.+.++||.  +|||||||||++++||||||||+++|+++|+++|++|+|+|||||||||
T Consensus        65 ---g~~L~~~i~~~p~~~LG~~~~~~fg~~~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~y~D~n~KpE~~~a  141 (440)
T d1pmia_          65 ---NQTLRDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIA  141 (440)
T ss_dssp             ---TEEHHHHHHHCHHHHTCHHHHHHHCCSSSCSEEEEEEEESSCCCEEECCCHHHHHHHHHHCTTTCCSSCCCCEEEEE
T ss_pred             ---CCcHHHHHHhChHhhcChhhHhhcCCCcCCceeeeeeccCCCCceeeCCCHHHHHhhccccccccCCCCCCceEEEE
Confidence               5799999999998 999999999984  8999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccc------cchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013464          165 ITEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQD------GEEKAKFVLQSIFTNLMTASMEMTTKATT  238 (442)
Q Consensus       165 Lt~f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~------~~~~~~~~L~~~f~~~~~~~~e~~~~~i~  238 (442)
                      ||+|+|||||||.+||.++|++.|+++.++|.....++.......      .....++.|+++|+.+|+.+.+.+++.++
T Consensus       142 Lt~F~al~Gfrp~~ei~~~L~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~~~  221 (440)
T d1pmia_         142 VTDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTA  221 (440)
T ss_dssp             SSCEEEEEEECCHHHHHHHHHHCHHHHHHHCHHHHHHHHHHCCCSCCTTSHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             ecchhhhcCCCCHHHHHHHHHhChHHHHhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999999999999988766665443221      13457889999999999999999999999


Q ss_pred             HHHHHhhhccC--CCCcchHHHHHHHHHhhCCCCcccchh-hcceeeECCCCCEEEecCCCceeeecCcEEEEeecCCce
Q 013464          239 KLKSRLHKESQ--VRPLTEKEQLVLRLEKQYPADIGVIAA-FFFNYVKLNPGQALYLGANEPHAYISGECIECMATSDNV  315 (442)
Q Consensus       239 ~l~~~~~~~~~--~~~~~~~~~~~~~l~~~yp~D~G~~~~-~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~vEim~~SDnt  315 (442)
                      .|+++++....  ........++++||+++||+|+|++++ ++||+++|+|||+||||||++|||++|++||||||||||
T Consensus       222 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~yp~D~g~~~~~l~LN~v~l~pGdaifvpaG~~HAyl~G~~vEima~SDnV  301 (440)
T d1pmia_         222 KLLERTDREPQVFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNV  301 (440)
T ss_dssp             HHHHHHHHCHHHHHTTCTTHHHHHHHHHHHSTTCTHHHHTTTTEEEEEECTTCEEEECTTCCEEEEEEEEEEEEESCCCC
T ss_pred             HHHHHHhhchhcccccchhHHHHHHHHHHHCCCCcchhhHhhhheeecccccceEEcCCCCceEecCCcEEEEecccCcE
Confidence            99998865211  001122678999999999999999984 889999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCChhHhhccccccCCCccccccc----cC----CCcEEEECCCCCceEEEEEEeCCCC--eeeccCCCCeE
Q 013464          316 VRAGLTPKHRDVQTLCSMLTYKQGFPEILKGF----PL----SPYITRYLPPFDEFEVDCCILPKGT--SSVFPAVSGPS  385 (442)
Q Consensus       316 ~R~glt~k~~dv~~ll~~l~~~~~~~~~~~~~----~~----~~~~~~y~~p~~~F~l~~i~~~~~~--~~~~~~~~~~~  385 (442)
                      ||+|+|+|++|+++++++++|++.++......    +.    ......|.+|+++|+++++++.++.  .......++++
T Consensus       302 ~R~glt~K~~Dvd~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~v~~~~l~~~~~~~~~~~~~~~~~  381 (440)
T d1pmia_         302 VRAGFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPS  381 (440)
T ss_dssp             EEEESCSSCCCHHHHHHHCCCCCCCGGGGBCCCBCCTTEEESCSEEEEECCSSSSCEEEEEECCTTTCCEEEECCCSSCE
T ss_pred             EEecccccccCHHHHHHhhcccccCccccccccccccccccCCcceEEeCCCCCceEEEEEEECCCCCceeeecCCCCcE
Confidence            99999999999999999999998776543221    11    1346789999999999999997543  33344567899


Q ss_pred             EEEEEcCcEEEEeCC---cEEEeCcccEEEEcCCCcEEEEec-----CcEEEEEEEcCC
Q 013464          386 IFLVTDGEGSMLTAS---HNDAVAEGDVLFAPANTEINITTS-----SKLQLYRAGVNS  436 (442)
Q Consensus       386 il~v~~G~~~i~~~~---~~~~l~~G~~~~Ipa~~~~~i~~~-----~~~~~~~a~~~~  436 (442)
                      |++|++|+++|...+   ..+.|++|+++||||+..++++++     +.+.+||||||+
T Consensus       382 Illv~~G~~~i~~~~~~~~~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~~rA~~~~  440 (440)
T d1pmia_         382 IVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVEA  440 (440)
T ss_dssp             EEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCEEEEEECCC
T ss_pred             EEEEEcCEEEEEecCCCccEEEeCCceEEEEcCCceEEEEeecCCCCCceEEEEEeccC
Confidence            999999999998753   369999999999999988888763     468999999984

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.1e-67  Score=526.47  Aligned_cols=301  Identities=20%  Similarity=0.205  Sum_probs=244.7

Q ss_pred             cccEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeee-eeecCCCCeEEecCCCCCccccccccCCCCCCC
Q 013464            9 RRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFW-MGTHESGPSFLAKKGGAGGVAGAVVNGSSANGG   87 (442)
Q Consensus         9 ~~~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W-~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~~   87 (442)
                      +.|++|+|++++|+|||++    |++++|.    ..+ ++|+||+| +|+||++||+|.+++                  
T Consensus         2 ~~Pl~l~p~~~~~~WGg~~----l~~~~g~----~~~-~~~~aE~W~~g~h~~~~S~v~~g~------------------   54 (315)
T d1qwra_           2 QSPIFLTPVFKEKIWGGTA----LRDRFGY----SIP-SESTGECWAISAHPKGPSTVANGP------------------   54 (315)
T ss_dssp             CSCEEEECEEEEEEEEESH----HHHHHCC----CCS-SSSEEEEEEECCCTTSCCEECSST------------------
T ss_pred             CCCEEecCcccCCCCchHH----HHHHhCC----CCC-CCCeeeEEEEEeecCCceEEECCC------------------
Confidence            4799999999999999974    8998854    333 57999999 799999999998764                  


Q ss_pred             CCccccHHHHHhhCCC-cCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEcc
Q 013464           88 CGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAIT  166 (442)
Q Consensus        88 ~~~~~~L~~li~~~p~-~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aLt  166 (442)
                       +.+++|.++++++|+ ++|.     +|.+||||+|+||++++||||||||+++|+++++.       +||||||||+| 
T Consensus        55 -~~~~~L~~~~~~~~~~~~~~-----~~~~~P~L~K~Lda~~~LSiQvHP~~~~A~~~~~~-------~~gK~E~wyil-  120 (315)
T d1qwra_          55 -YKGKTLIELWEEHREVFGGV-----EGDRFPLLTKLLDVKEDTSIKVHPDDYYAGENEEG-------ELGKTECWYII-  120 (315)
T ss_dssp             -TTTCBHHHHHHHCGGGGTTC-----CCSSCCEEEEEEEESSCCCEEECCCHHHHHHHTTT-------CCCCCEEEEEE-
T ss_pred             -ccCccHHHHHHhChhhcccc-----cCCccceEEeeeccCCCcccccCCCHHHHHhhccc-------cCCCCceEEEE-
Confidence             357899999999999 6664     35789999999999999999999999999998864       58999999996 


Q ss_pred             chhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q 013464          167 EFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLHK  246 (442)
Q Consensus       167 ~f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~~  246 (442)
                                        ++.|++++++|++..                             +++++++++++       
T Consensus       121 ------------------~a~~~a~~~~G~~~~-----------------------------~~~e~~~~i~~-------  146 (315)
T d1qwra_         121 ------------------DCKENAEIIYGHTAR-----------------------------SKTELVTMINS-------  146 (315)
T ss_dssp             ------------------EECTTCEEEEEECCS-----------------------------SHHHHHHHHHT-------
T ss_pred             ------------------EcCCCcEEEEcCCCC-----------------------------CHHHHHHHHHc-------
Confidence                              445555555554431                             24455444443       


Q ss_pred             ccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcE-EEEeecCCceEEc-------
Q 013464          247 ESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGEC-IECMATSDNVVRA-------  318 (442)
Q Consensus       247 ~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~-vEim~~SDnt~R~-------  318 (442)
                        +  +   ++                   .+||+++|+|||++||||||+|||++|++ +|||||||||||+       
T Consensus       147 --~--~---~~-------------------~lln~~~l~~Gd~~~ipaG~~HA~~~G~l~~Eiq~~SD~t~R~yd~~R~~  200 (315)
T d1qwra_         147 --G--D---WE-------------------GLLRRIKIKPGDFYYVPSGTLHALCKGALVLETQQNSDATYRVYDYDRLD  200 (315)
T ss_dssp             --T--C---HH-------------------HHEEEEECCTTCEEEECTTCCEEECSSEEEEEEEESCCCCEEEECTTCBC
T ss_pred             --C--C---HH-------------------HhCcEEEcccCCEEEeCCCCeeEecCCCEEEEEecCCCceEEEeeccccc
Confidence              3  3   55                   79999999999999999999999999985 9999999999994       


Q ss_pred             -CCCCCCCChhHhhccccccCCCccccccccCC-CcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEE
Q 013464          319 -GLTPKHRDVQTLCSMLTYKQGFPEILKGFPLS-PYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSM  396 (442)
Q Consensus       319 -glt~k~~dv~~ll~~l~~~~~~~~~~~~~~~~-~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i  396 (442)
                       +.++|++|++++++++++....+....+.... +....+..++++|++.++++.+..  .+...++++|++|++|+++|
T Consensus       201 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~--~~~~~~~~~il~vi~G~~~i  278 (315)
T d1qwra_         201 SNGSPRELHFAKAVNAATVPHVDGYIDESTESRKGITIKTFVQGEYFSVYKWDINGEA--EMAQDESFLICSVIEGSGLL  278 (315)
T ss_dssp             TTSCBCCCCHHHHHHHSCSSCCCCCCCCEEEEETTEEEEEEEECSSCEEEEEEEEEEE--EECCCSSCEEEEEEEEEEEE
T ss_pred             CCCcccccCHHHHhhhcccccCCccccccccccCCceEEEcCCCCcEEEEEEEecCcE--EeccCCCcEEEEEEeCeEEE
Confidence             56778889999999999988766543332222 333445456889999999997433  34455789999999999999


Q ss_pred             EeCCcEEEeCcccEEEEcCCCc-EEEEecCcEEEEEEEc
Q 013464          397 LTASHNDAVAEGDVLFAPANTE-INITTSSKLQLYRAGV  434 (442)
Q Consensus       397 ~~~~~~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~~  434 (442)
                      .++++++.|++|+++||||+.+ ++|++  ++++++||+
T Consensus       279 ~~~~~~~~l~~G~~~~ipa~~~~~~i~G--~~~ll~a~v  315 (315)
T d1qwra_         279 KYEDKTCPLKKGDHFILPAQMPDFTIKG--TCTLIVSHI  315 (315)
T ss_dssp             EETTEEEEEETTCEEEECTTCCCEEEEE--EEEEEEEEC
T ss_pred             EECCEEEEEecCcEEEEECCCCCEEEEe--eEEEEEEEC
Confidence            9998999999999999999997 99976  789999985

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=9.6e-64  Score=494.21  Aligned_cols=292  Identities=16%  Similarity=0.233  Sum_probs=236.4

Q ss_pred             hcccEEeeccccccccCCCCCchHHHHHhcCCCCCCCCCCCCceeee-eeecCCCCeEEecCCCCCccccccccCCCCCC
Q 013464            8 ARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFW-MGTHESGPSFLAKKGGAGGVAGAVVNGSSANG   86 (442)
Q Consensus         8 ~~~~~~l~p~~~~y~WG~~~~~sll~~l~~~~~~~~~~~~~p~aE~W-~g~Hp~~pS~v~~~~~~~~~~~~~~~~~~~~~   86 (442)
                      ++-+|+++|.+++|+|||+.    |.+++|.       +++|+||+| +|+||+++|+|.+++                 
T Consensus         4 p~~i~~~~~~~~e~iWGG~~----l~~~~g~-------~~~~~gE~W~~~~hp~~~S~v~~~g-----------------   55 (299)
T d1zx5a1           4 PSFIFQAQENLVERPWGGEW----IALLKGF-------RQSGIGESWEFSAHTSRPSTVLVKG-----------------   55 (299)
T ss_dssp             CSCBEESSCCEEECTTCCSH----HHHHTTS-------CCSCEEEEEESCCCTTSCCEEEETT-----------------
T ss_pred             cchhhhhCccccCCCCChhH----hHHhcCC-------CCCCcceEEEEEEecCCceEEEECC-----------------
Confidence            34589999999999999974    8998853       246999999 799999999998764                 


Q ss_pred             CCCccccHHHHHhhCCC-cCCchhhhhcCCCCCceeeeeecCCCCccccCCCHHHHHHhcCcCCCCCCCCCCCceeEEEc
Q 013464           87 GCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAI  165 (442)
Q Consensus        87 ~~~~~~~L~~li~~~p~-~lG~~~~~~~g~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~Y~D~n~KpE~w~aL  165 (442)
                         ++.+|.++++++|+ +||+.. . ++++||||+|+||++++||||||||+++|+++++.       ++||+||||+|
T Consensus        56 ---~~~~L~~li~~~~~~llG~~~-~-~~~~fP~L~K~Lda~~~LSiQVHPd~~~A~~~~~~-------~~~k~E~~~~l  123 (299)
T d1zx5a1          56 ---QQLSMIELFSKHRDELLGRAA-E-KFSKFPILVRLIDAASPTQVHVHPSDKAAESLGEA-------EGGVESAWLVF  123 (299)
T ss_dssp             ---EEEEHHHHHHHHHHHHHBTTT-T-TCSSCCEEEEEEEECSCCCCEECCCHHHHHHTTCS-------SCCCCEEEEEC
T ss_pred             ---CccCHHHHHHhCHHHHCCccc-c-cCCCcceEEEEeccCCCcceeeCCCHHHHhhhccc-------CCCcEEEEEEc
Confidence               36799999999998 999764 3 45699999999999999999999999999998874       58999999999


Q ss_pred             cchhhhcCCCcHHHHHHHhccCcchhhhhcchhhhhhhhhhccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 013464          166 TEFEALCSFISLQELKSVLQNVPEIVELVGSEEANRVLHVEMQDGEEKAKFVLQSIFTNLMTASMEMTTKATTKLKSRLH  245 (442)
Q Consensus       166 t~f~al~GFr~~~ei~~~L~a~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~e~~~~~i~~l~~~~~  245 (442)
                      ++|+++||||+.                                                  .+.+++++++++      
T Consensus       124 ~~~~~~~Gf~~~--------------------------------------------------~~~e~l~~~i~~------  147 (299)
T d1zx5a1         124 NKGKAYAGFKED--------------------------------------------------VKIEELEEKLKE------  147 (299)
T ss_dssp             SSCEEEEEESSC--------------------------------------------------CCHHHHHHHHTS------
T ss_pred             CCcceEeeccCC--------------------------------------------------CCHHHHHHHHhc------
Confidence            999999999873                                                  124444443332      


Q ss_pred             hccCCCCcchHHHHHHHHHhhCCCCcccchhhcceeeECCCCCEEEecCCCceeeecCcE-EEEeecCCceEEcCCCCCC
Q 013464          246 KESQVRPLTEKEQLVLRLEKQYPADIGVIAAFFFNYVKLNPGQALYLGANEPHAYISGEC-IECMATSDNVVRAGLTPKH  324 (442)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~~yp~D~G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~G~~-vEim~~SDnt~R~glt~k~  324 (442)
                         ++.+   +.                   .+||+++|+|||++||||||+||+ .|.+ +|||||||||||.    +.
T Consensus       148 ---~~~~---~~-------------------~lln~v~v~~Gd~i~IpaGtvHAg-~g~li~Eiq~~SD~tyR~----~~  197 (299)
T d1zx5a1         148 ---EDFD---FK-------------------TLLNTFETTPYDTFVIRPGIPHAG-EGLRVLEVSSNSTLAYFF----NE  197 (299)
T ss_dssp             ---SSCC---GG-------------------GGEEEEECCTTCEEEECTTCCEEE-ESEEEEEEEESCCCCEES----ST
T ss_pred             ---cchh---hH-------------------hhccEEEcccCCEEEeCCCCcEEC-CCceEEEEecCCCceecc----cc
Confidence               2112   22                   799999999999999999999995 5665 7999999999996    55


Q ss_pred             CChhHhhccccccCCCccccccccCCCcEEEECCCCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEE
Q 013464          325 RDVQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDA  404 (442)
Q Consensus       325 ~dv~~ll~~l~~~~~~~~~~~~~~~~~~~~~y~~p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~  404 (442)
                      .|.+...++++++...+.....       ..+.+++++|+++++++++...  ....++++|++|++|+++|+ +++++.
T Consensus       198 ~D~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~F~~~~~~~~~~~~--~~~~~~~~il~~~~G~~~i~-~~~~~~  267 (299)
T d1zx5a1         198 NDWEKVKKVLNTKKVEEFEVKG-------KKGMAETENFGLEVVDVTGTAE--IKTGGVMNILYAAEGYFILR-GKETAD  267 (299)
T ss_dssp             TTHHHHHHHCCCSBCCGGGTBC-------BTTEEECSSEEEEEEEEEEEEE--EECCSBCEEEEEEESCEEEE-SSSEEE
T ss_pred             cCccccccccchhhccccccCc-------eeccCCccceEEEEEEecCcEE--eccCCceEEEEEeccEEEEe-CCCEEE
Confidence            7889999999987654322111       1122247889999999975433  34557899999999999986 566899


Q ss_pred             eCcccEEEEcCCCc-EEEEecCcEEEEEEEcCC
Q 013464          405 VAEGDVLFAPANTE-INITTSSKLQLYRAGVNS  436 (442)
Q Consensus       405 l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~~~~  436 (442)
                      |++|+++||||+.+ ++++++ ..+++++|+++
T Consensus       268 l~~G~s~~iPA~~~~~~i~g~-~~~~l~~yv~~  299 (299)
T d1zx5a1         268 LHRGYSCLVPASTDSFTVESE-RGKIVRIYLKV  299 (299)
T ss_dssp             ECTTCEEEECTTCCEEEEEEE-EEEEEEEEECC
T ss_pred             EcCCcEEEEecCCccEEEEcC-cEEEEEEEEeC
Confidence            99999999999987 999873 57999999874

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.25  E-value=8.2e-06  Score=75.78  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             CCceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQL  429 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~  429 (442)
                      ..+|.+..+++++|...... ....-.+++|++|++.+..+++.+.+++||++++|+++.-.+.+  .++++.
T Consensus       162 ~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i~~~~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~  234 (245)
T d1sfna_         162 AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKY  234 (245)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEESSSCEEE
T ss_pred             ccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEeeEeCCCCCEEE
Confidence            57799999999888654322 23456899999999999999999999999999999999844544  445553

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=8.4e-06  Score=75.92  Aligned_cols=146  Identities=11%  Similarity=0.028  Sum_probs=83.6

Q ss_pred             eeeECCCCCEEEecCCCceeee-cCcE-EEEeecCCceEEc-CCCCCCCChhHhhccccccCCCccccccccCC-C-cEE
Q 013464          280 NYVKLNPGQALYLGANEPHAYI-SGEC-IECMATSDNVVRA-GLTPKHRDVQTLCSMLTYKQGFPEILKGFPLS-P-YIT  354 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~-~G~~-vEim~~SDnt~R~-glt~k~~dv~~ll~~l~~~~~~~~~~~~~~~~-~-~~~  354 (442)
                      +.+.+++||++|+|+|+.|.+. .|+- +.++     ++|. .-..+....+  ....+....++   .+.+.. . ..+
T Consensus        91 ~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l-----~v~~~~~~~~~~~~~--~~~~~~~d~~~---~~~~~~~~~~~~  160 (253)
T d1rc6a_          91 KTFALSEGGYLYCPPGSLMTFVNAQAEDSQIF-----LYKRRYVPVEGYAPW--LVSGNASELER---IHYEGMDDVILL  160 (253)
T ss_dssp             EEEEEETTEEEEECTTCCCEEEECSSSCEEEE-----EEEEECCCCTTCCCC--CEEEEGGGSCC---C-------CEEE
T ss_pred             EEEEECCCCEEEECCCCCEEEEECCCCCEEEE-----EEEeccccCCCccce--eeccccccccc---ccccccceeEEE
Confidence            4567999999999999999985 3332 3332     2221 1110100000  00000000000   000111 1 122


Q ss_pred             EECC--CCCceEEEEEEeCCCCeee-ccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEE
Q 013464          355 RYLP--PFDEFEVDCCILPKGTSSV-FPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQL  429 (442)
Q Consensus       355 ~y~~--p~~~F~l~~i~~~~~~~~~-~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~  429 (442)
                      .+.+  ....|.+..+++.+|.... ......-.+++|++|++++..+++.+.+++||.++|||++.-.+.+  .+....
T Consensus       161 ~~~p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~~i~~~~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~  240 (253)
T d1rc6a_         161 DFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFS  240 (253)
T ss_dssp             ECSCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEEEETTCEEEECSSEEEEEEEC----CEE
T ss_pred             EecCccccccEEEEEEEECCCceEeEEEeCCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEeeeeCCCCCcEE
Confidence            3333  3567999999998775432 1223456799999999999999999999999999999999755544  234455


Q ss_pred             EEEEcC
Q 013464          430 YRAGVN  435 (442)
Q Consensus       430 ~~a~~~  435 (442)
                      |..|-+
T Consensus       241 ~~~~~~  246 (253)
T d1rc6a_         241 YIYSKD  246 (253)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            666543

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.14  E-value=1.9e-05  Score=73.36  Aligned_cols=65  Identities=14%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CCCceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          359 PFDEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       359 p~~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      ....|.+..+++.+|..... .....-.+++|++|++.+..+++.+.+++||++++||++.-.+.+
T Consensus       164 ~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~~~~~~~~~~GD~i~~~~~~pH~~~n  229 (250)
T d1sefa_         164 FDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYA  229 (250)
T ss_dssp             TTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEE
T ss_pred             ccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEECCEEEEecCCCEEEECCCCCEEeEc
Confidence            36779999999988765322 223456799999999999999999999999999999999855544

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.04  E-value=2.8e-05  Score=63.08  Aligned_cols=78  Identities=17%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~~  437 (442)
                      .+.+.+..+.+++|.....-..+...+++|++|++++..+++...+++||++++|++..-.+++.++..++...++++
T Consensus        34 ~~~~~i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~vi~pe  111 (112)
T d1yhfa1          34 RQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLVVVKPE  111 (112)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEEEECSC
T ss_pred             CCCcEEEEEEECCCCCcceEECCCCEEEEEEeCEEEEEEccEEEEecCCEEEEcCCCCeEEeEECCCcEEEEEEECCC
Confidence            366888889998887655444567899999999999999999999999999999999998888877888887777665

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=7.9e-05  Score=71.06  Aligned_cols=72  Identities=18%  Similarity=0.346  Sum_probs=53.8

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      ..+.+....++.|.....-....-.+++|++|++++..+++++.+++||+++||++......++++..+|..
T Consensus       220 ~t~~~~~~~l~pG~~~~~h~h~~~~~~~v~~G~g~~~v~~~~~~~~~GD~~~vP~~~~h~~~~~~d~~l~~v  291 (308)
T d2d40a1         220 PSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVPTWHGVSFQTTQDSVLFSF  291 (308)
T ss_dssp             SSCEEEEEEECTTCBCCCBEESSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             ceeEEEEEEccCCCccCCccCChheEEEEEeCcEEEEECCEEEEEeCCCEEEeCCCCeEEEEcCCCeEEEEE
Confidence            345666666766653322223456799999999999999999999999999999998877777666555554

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.97  E-value=5.7e-05  Score=71.11  Aligned_cols=71  Identities=13%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             CCceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLY  430 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~  430 (442)
                      ..+|.+..+++.+|..... ..+..-.+++|++|++.+..+++...+++||++|+|+++.-.+.+  +++++.+
T Consensus       186 ~~d~~~~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~~~~~~~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl  259 (273)
T d1sq4a_         186 RHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYL  259 (273)
T ss_dssp             TCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEEEEEETTCEEEEEESCCEEEECCSSSCEEEE
T ss_pred             ccceEEEEEEEccCCccccccccccceEEEEEccEEEEEECCEEEEecCCCEEEECCCCCEEeEeCCCCCEEEE
Confidence            4679999999987764432 223345799999999999999999999999999999999855554  4555433

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=6e-05  Score=59.78  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=63.5

Q ss_pred             CCceEEEEEEeCCCCeeeccCCC-CeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVS-GPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~-~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      .+.|.+..+.+.+|.....-.+. .-.+++|++|++++..++++..+++||++++|++..-.+++  +.++.++..+.|.
T Consensus        25 ~~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~P~  104 (105)
T d1v70a_          25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPR  104 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEESC
T ss_pred             CCCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEEeeeEEEecceEEEEeCCCCEEEeEECCCCCEEEEEEECCC
Confidence            36799999999887655433333 35799999999999999999999999999999999866665  5678888888887


Q ss_pred             C
Q 013464          437 R  437 (442)
Q Consensus       437 ~  437 (442)
                      |
T Consensus       105 p  105 (105)
T d1v70a_         105 P  105 (105)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=97.93  E-value=0.00011  Score=70.67  Aligned_cols=77  Identities=25%  Similarity=0.202  Sum_probs=59.4

Q ss_pred             CCceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~~~  436 (442)
                      ...|.+..++++.|.....-.+ ....+++|++|++++..+++++.+++||+++||++..-.+++ +...+++..+.|.
T Consensus       211 ~~~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v~~~~~~~~~Gd~~~vP~g~~H~~~~~~~~~~~l~~~~p~  289 (330)
T d1y3ta1         211 DGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPG  289 (330)
T ss_dssp             TTSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEECSSSEEEEEEEESS
T ss_pred             CCcEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEECCEEEEeCCCCEEEECcCCcEEeEeCCCCeEEEEEECCc
Confidence            3458899999877754322122 246799999999999999999999999999999999855554 5677888777664

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.80  E-value=5.6e-05  Score=61.06  Aligned_cols=78  Identities=15%  Similarity=0.321  Sum_probs=62.4

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCc-EEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASH-NDAVAEGDVLFAPANTEINITT--SSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~-~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~~~~  436 (442)
                      .+++.+.++.+++|.....-..+.-.+++|++|++++..+++ .+.+++||++++|++..-.+.+  +.++.++....|.
T Consensus        23 ~~~~~v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~P~  102 (108)
T d2b8ma1          23 TEHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPH  102 (108)
T ss_dssp             CSSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSC
T ss_pred             CCCEEEEEEEECCCCcChhhcccccEEEEEEeeeEEEEEecccEEEeecceEeeccCCceEEEEcCCCCcEEEEEEECCC
Confidence            467999999998886543223455678999999999988764 6899999999999999877775  5668888887777


Q ss_pred             C
Q 013464          437 R  437 (442)
Q Consensus       437 ~  437 (442)
                      |
T Consensus       103 p  103 (108)
T d2b8ma1         103 P  103 (108)
T ss_dssp             G
T ss_pred             C
Confidence            6

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=97.71  E-value=0.0004  Score=67.17  Aligned_cols=54  Identities=19%  Similarity=0.287  Sum_probs=41.9

Q ss_pred             CCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEEc
Q 013464          381 VSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAGV  434 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~  434 (442)
                      .+...+++|++|++++..+ ++...|+.||+++||++....+.+ +...+++....
T Consensus       268 ~~~~e~~~vleG~~~~~i~~~~~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~~~  323 (348)
T d1juha_         268 FPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSS  323 (348)
T ss_dssp             CSSCEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCEEEEEEeceEEEEeCCcceEEecCCCEEEECCCCcEEEEeCCCCcEEEEEEc
Confidence            3457899999999999874 567899999999999999877766 34455554443

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=97.62  E-value=0.00033  Score=67.99  Aligned_cols=51  Identities=20%  Similarity=0.526  Sum_probs=44.5

Q ss_pred             CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEE
Q 013464          382 SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRA  432 (442)
Q Consensus       382 ~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a  432 (442)
                      ....+++|++|+|++..+++++.+++||+|+||+....++.++++..+|.+
T Consensus       282 ~~~~v~~vi~G~g~~~i~~~~~~~~~gDvf~vP~~~~h~~~n~~~~~Lf~~  332 (351)
T d2phda1         282 VGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQAETQFDLFRF  332 (351)
T ss_dssp             SSCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEESSCEEEEEE
T ss_pred             cCcEEEEEEeCcEEEEECCEEEEEcCCCEEEeCCCCcEEEecCCCeEEEEE
Confidence            457899999999999999999999999999999999988888777665544

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=97.62  E-value=0.00016  Score=70.38  Aligned_cols=63  Identities=19%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      +-+.+....+++|..-..-....-.++.|++|+|++..+++++.+++||+|+||+.....+.+
T Consensus       254 ~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i~g~~~~~~~GDv~~vP~~~~h~~~N  316 (355)
T d3bu7a1         254 LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCN  316 (355)
T ss_dssp             SSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred             ceeeEEEEEECCCCccCCcCccCcEEEEEEECcEEEEECCEEEEeeCCCEEEeCCCCcEEeec
Confidence            345555566666643222223456799999999999999999999999999999999877765

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=97.62  E-value=0.00041  Score=54.67  Aligned_cols=66  Identities=8%  Similarity=-0.003  Sum_probs=54.3

Q ss_pred             CCCceEEEEEEeCCCCeeeccC--CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec
Q 013464          359 PFDEFEVDCCILPKGTSSVFPA--VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS  424 (442)
Q Consensus       359 p~~~F~l~~i~~~~~~~~~~~~--~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~  424 (442)
                      +...|.+..+++.+|.......  ...-.+++|++|++++..+++.+.|++||++++|++..-.+.+.
T Consensus        18 ~~~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~   85 (99)
T d1y9qa2          18 ADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAV   85 (99)
T ss_dssp             TTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEEEEECTTCEEEEECSSSEEEEES
T ss_pred             CcCCEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEecceEEEecCCCEEEECCCCeEEEEeC
Confidence            4567999999998875443222  23468999999999999999999999999999999998777763

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=0.0002  Score=58.01  Aligned_cols=73  Identities=15%  Similarity=0.148  Sum_probs=58.7

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      .+.|.+..+++.+|.....-.++...+++|++|++++..+++...+++||++++|++..-++.+  +.+++++..
T Consensus        33 ~~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~i  107 (114)
T d1vj2a_          33 APNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL  107 (114)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCEEEEETTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CCceEEEEEEECCCCCCCceECCCcEEEEEEEceeEEEEeeeeeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEE
Confidence            5679999999987765544345567888999999999999999999999999999999877776  445555544

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.16  E-value=0.00073  Score=55.78  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEEcCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAGVNS  436 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~~~~  436 (442)
                      ...|.+-...++++. ... ....-.+++|++|++++..+++.+.|++||+++||++...++++.++++++.+..|.
T Consensus        51 ~~~~~~~~~~~~~g~-~~~-~~~~~E~~~vl~G~~~~~~~g~~~~l~~Gd~~~~p~g~~h~~~~~~~~~~~~v~~Pa  125 (128)
T d2pyta1          51 GSSMAAGFMQWDNAF-FPW-TLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAWPA  125 (128)
T ss_dssp             TCSSEEEEEEEEEEE-EEE-ECSSEEEEEEEEEEEEEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEEST
T ss_pred             CCceEEEEEEECCCc-cce-eCCccEEEEEEEeEEEEEECCEEEEecCCCEEEECCCCEEEEEeCCCEEEEEEECCC
Confidence            345666666665553 222 245567899999999999999999999999999999999778776667776666665

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.002  Score=51.84  Aligned_cols=72  Identities=21%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             CceEEEEEEeCCCCeeeccCCCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ..+.+.++++++|.....-.+.. ..+++|++|++++..+++...+++||++++|++..-.+++  +.++.++..
T Consensus        37 ~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~l~I  111 (115)
T d1o4ta_          37 KARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  111 (115)
T ss_dssp             SEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             ccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEEcCeeEEeeccEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            34566778888876544333333 5799999999999999999999999999999999866665  455665543

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.10  E-value=0.0056  Score=59.50  Aligned_cols=75  Identities=11%  Similarity=0.072  Sum_probs=54.1

Q ss_pred             CceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEe---CC--cEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLT---AS--HNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~---~~--~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      ..+.+..+++.+|.....--+ ....+.+|++|+++++.   ++  .+..+++||+++||++..-.+++  ++++.++..
T Consensus       248 ~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~v  327 (372)
T d1j58a_         248 KTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEI  327 (372)
T ss_dssp             CSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEE
T ss_pred             CceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEE
Confidence            468889999987754332112 45689999999998753   23  25789999999999999855554  567777776


Q ss_pred             EcC
Q 013464          433 GVN  435 (442)
Q Consensus       433 ~~~  435 (442)
                      +..
T Consensus       328 f~s  330 (372)
T d1j58a_         328 FKD  330 (372)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            654

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.0016  Score=54.32  Aligned_cols=75  Identities=19%  Similarity=0.209  Sum_probs=56.6

Q ss_pred             CCCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC-CcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464          359 PFDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA-SHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAG  433 (442)
Q Consensus       359 p~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~  433 (442)
                      +...|.+.++++.+|.....-.+...++++|++|++.+... ++...+++||+++||++..-...+  +..+..+..+
T Consensus        31 ~~~~~~~~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~~~g~~~~~~~~Gd~v~ippg~~H~~~a~~~~~~~~lai~  108 (134)
T d2f4pa1          31 GVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGAAPDEELVHIGIS  108 (134)
T ss_dssp             CSSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEECTTCCEEEEEBTTBCEEEEEEE
T ss_pred             CCceeEEEEEEECCCCcCccccCCCCEEEEEEeCEEEEEECCcceEEEcCCCeEEECCCCceECccCCCCcEEEEEEE
Confidence            45689999999988865544445678999999999999775 456899999999999999743332  4455555444

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.96  E-value=0.0028  Score=54.22  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCC---------cEEEeCcccEEEEcCCCcEEEEe--c-CcE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTAS---------HNDAVAEGDVLFAPANTEINITT--S-SKL  427 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~---------~~~~l~~G~~~~Ipa~~~~~i~~--~-~~~  427 (442)
                      .....+...++.+|.....-......+++|++|++++..++         +++.+++||+++||++..-.+.+  + .++
T Consensus        38 ~~~i~v~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l  117 (160)
T d1lr5a_          38 MKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDL  117 (160)
T ss_dssp             CSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCE
T ss_pred             ccEEEEEEEEECCCccccceeccccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECCCCCCE
Confidence            46789999999877543222345678999999999998654         57899999999999999877765  2 468


Q ss_pred             EEEEEEcCCC
Q 013464          428 QLYRAGVNSR  437 (442)
Q Consensus       428 ~~~~a~~~~~  437 (442)
                      .++.+..+.+
T Consensus       118 ~~l~i~~~~p  127 (160)
T d1lr5a_         118 QVLVIISRPP  127 (160)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEECCCC
Confidence            8877765443

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.14  E-value=0.012  Score=53.59  Aligned_cols=70  Identities=16%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec--CcEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS--SKLQLYR  431 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~--~~~~~~~  431 (442)
                      ...|+...+++.+|..-.  ....=.+++|++|++++..+++...|.+|+.+++|++....+.+.  ..+.+++
T Consensus        47 ~~~F~~~~v~~~pGg~~~--~~~~E~~~~Vl~G~~~~~~~g~~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~  118 (245)
T d1sfna_          47 GARFVQFTAEMPAGAQAT--ESVYQRFAFVLSGEVDVAVGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFE  118 (245)
T ss_dssp             CCSSEEEEEEECTTCEEE--CCSSEEEEEEEEEEEEEECSSCEEEECTTEEEEECTTCCCEEEEEEEEEEEEEE
T ss_pred             CCceEEEEEEECCCCCCC--CCCccEEEEEEECEEEEEECCEEEEecCCCEEEeCCCCcEEEEeCCCccEEEEE
Confidence            356999999998776533  334567889999999999999999999999999999998667663  3344443

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=96.11  E-value=0.012  Score=50.65  Aligned_cols=63  Identities=13%  Similarity=0.138  Sum_probs=48.0

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe----CCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT----ASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~----~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      .++++.+++++++.-....-.+...|++|++|+|++..    +..+..+++||+++||++....+.+
T Consensus        42 ~~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n  108 (170)
T d1uija1          42 RDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVN  108 (170)
T ss_dssp             TTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEE
T ss_pred             hheEEEEEEecCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCCCeEEEEE
Confidence            46999999998774322111356889999999999864    3347889999999999999865655

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=96.03  E-value=0.015  Score=50.39  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=47.9

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CC--cEEEeCcccEEEEcCCCcEEEEe
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--AS--HNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~--~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      ..|.+.+++++++.-....-.+...|++|++|+|++..  .+  .+..|++||+++||++....+.+
T Consensus        39 ~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N  105 (178)
T d1dgwa_          39 RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLIN  105 (178)
T ss_dssp             TTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEE
T ss_pred             cceEEEEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEE
Confidence            46999999998775332111356899999999999864  32  46789999999999999865654

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=96.02  E-value=0.023  Score=53.62  Aligned_cols=78  Identities=21%  Similarity=0.138  Sum_probs=59.5

Q ss_pred             CCceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEEcCCC
Q 013464          360 FDEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT-SSKLQLYRAGVNSR  437 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~~~~~  437 (442)
                      ...|++.++.+.+|.......+ ..-.+++|++|++++..++++..+++||++++|++..-.+++ +.+.+++..+.+..
T Consensus        39 ~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~~~~l~~~~p~~  118 (330)
T d1y3ta1          39 GDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGERYLLISGDYANIPAGTPHSYRMQSHRTRLVSYTMKGN  118 (330)
T ss_dssp             TSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTEEEEECTTCEEEECTTCCEEEEECSTTEEEEEEEETTS
T ss_pred             CCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEECCEEEEEcCCCEEEeCCCCeEEEEEcCCCeEEEEEECCcc
Confidence            3569999999987765432223 356799999999999999999999999999999999755555 34566666655543

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.84  E-value=0.01  Score=54.19  Aligned_cols=73  Identities=10%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             CCceEEEEEEeCCCCeeeccC-CCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPA-VSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRA  432 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~-~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a  432 (442)
                      -..|.+..+++.++....... ..+ -.+++|++|++++..+++...|++||++++|++..-.+.+  +++++++..
T Consensus        45 Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v  121 (250)
T d1sefa_          45 GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLY  121 (250)
T ss_dssp             TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             CCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEECCEEEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEE
Confidence            356999999987654322111 233 4578899999999999999999999999999999866765  456666664

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=95.81  E-value=0.044  Score=44.27  Aligned_cols=73  Identities=14%  Similarity=0.180  Sum_probs=52.3

Q ss_pred             CCceEEEEEEeCCCCee--ec-cCCCCeEEEEEEcCcEEEEeC----CcEEEeCcccEEEEcCCCcEEEEe---cCcEEE
Q 013464          360 FDEFEVDCCILPKGTSS--VF-PAVSGPSIFLVTDGEGSMLTA----SHNDAVAEGDVLFAPANTEINITT---SSKLQL  429 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~--~~-~~~~~~~il~v~~G~~~i~~~----~~~~~l~~G~~~~Ipa~~~~~i~~---~~~~~~  429 (442)
                      .+.+...++++..+...  .. ..+.+-.++.|++|++++..+    ++++.|++||++++|++..-.+.+   +..+.+
T Consensus        38 ~~~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~  117 (122)
T d2bnma2          38 APSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKL  117 (122)
T ss_dssp             STTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEEE
T ss_pred             CCccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEEcCCCCccEEE
Confidence            45688888888654321  11 124578899999999999864    458999999999999999866665   234555


Q ss_pred             EEE
Q 013464          430 YRA  432 (442)
Q Consensus       430 ~~a  432 (442)
                      +..
T Consensus       118 l~V  120 (122)
T d2bnma2         118 IAV  120 (122)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=95.73  E-value=0.01  Score=45.69  Aligned_cols=41  Identities=12%  Similarity=0.217  Sum_probs=34.6

Q ss_pred             CeEEEEEEcCcEEEEe-CCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          383 GPSIFLVTDGEGSMLT-ASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       383 ~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      .-.+..+++|+++|+. +|+...+++||++++|++...+.+-
T Consensus        36 ~~E~~~ileG~v~i~~~~G~~~~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          36 TNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             SCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEE
T ss_pred             ccEEEEEEEeEEEEEcCCCCEEEEeCCCEEEECCCCEEEEEE
Confidence            3467889999999987 5678899999999999999866654

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=95.73  E-value=0.017  Score=51.19  Aligned_cols=64  Identities=13%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe----CCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT----ASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~----~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      +..|.|..++++++.-....-.+...|++|++|+|.+..    ...+..|++||.++||++....+.+
T Consensus        37 l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N  104 (203)
T d1uika1          37 LRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVN  104 (203)
T ss_dssp             GTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEE
T ss_pred             ccceEEEEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEE
Confidence            357999999998764322112357899999999998864    2347889999999999999855554

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.67  E-value=0.021  Score=52.84  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             CceEEEEEEeCCCCeeecc-CCCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFP-AVSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR  431 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~-~~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~  431 (442)
                      +-|+...+++.+|.....+ ...+ -.+++|++|++++..+++...|++||++++|++..-++++  +.+++++.
T Consensus        64 ~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~~g~~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~  138 (273)
T d1sq4a_          64 ETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHW  138 (273)
T ss_dssp             CSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             cceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEECCEEEEecCCCEEEECCCCcEeeeecCCCCEEEEE
Confidence            5699999999655322211 1223 4688999999999999999999999999999999977875  44566554

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=95.48  E-value=0.052  Score=46.18  Aligned_cols=75  Identities=17%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             CCceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe---CCc---------EEEeCcccEEEEcCCCcEEEEecCc
Q 013464          360 FDEFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT---ASH---------NDAVAEGDVLFAPANTEINITTSSK  426 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~---~~~---------~~~l~~G~~~~Ipa~~~~~i~~~~~  426 (442)
                      .-..++.++++.++.-... ...+...+++|++|++.+..   ++.         +..|++||.++||++....+.++++
T Consensus        17 ~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~   96 (162)
T d2phla2          17 SLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSN   96 (162)
T ss_dssp             TTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSS
T ss_pred             CCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCC
Confidence            4578999999987753321 11356899999999998853   221         3579999999999999866777667


Q ss_pred             EEEEEEEc
Q 013464          427 LQLYRAGV  434 (442)
Q Consensus       427 ~~~~~a~~  434 (442)
                      ..++...+
T Consensus        97 ~~~v~~~~  104 (162)
T d2phla2          97 VNFTGFGI  104 (162)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEe
Confidence            66555443

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.039  Score=50.15  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=55.0

Q ss_pred             CCceEEEEEEeCCCCeeecc-CCCC-eEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFP-AVSG-PSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITT--SSKLQLYRAG  433 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~-~~~~-~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~a~  433 (442)
                      -..|.+..+++.+|...... ...+ -.+++|++|++++..+++...++.||++++|++....+.+  +..++++...
T Consensus        48 g~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~  125 (253)
T d1rc6a_          48 GASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYK  125 (253)
T ss_dssp             TCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CCceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            36799999988755332211 1223 3578899999999999999999999999999999876765  4566776543

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=94.92  E-value=0.056  Score=47.58  Aligned_cols=72  Identities=11%  Similarity=0.130  Sum_probs=49.3

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe--CCc-E-E------EeCcccEEEEcCCCcEEEEe-c--Cc
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT--ASH-N-D------AVAEGDVLFAPANTEINITT-S--SK  426 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~--~~~-~-~------~l~~G~~~~Ipa~~~~~i~~-~--~~  426 (442)
                      ...|.+.+++++++.-....-.+.+.|++|++|+|.+..  .+. + .      .+++||+++|||+....+.+ +  .+
T Consensus        39 l~~~~v~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~  118 (200)
T d2phla1          39 LEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKED  118 (200)
T ss_dssp             GTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCC
T ss_pred             ccceEEEEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCC
Confidence            357899999998764321111357899999999998853  332 1 1      48999999999999865654 2  24


Q ss_pred             EEEEE
Q 013464          427 LQLYR  431 (442)
Q Consensus       427 ~~~~~  431 (442)
                      +.++.
T Consensus       119 l~~~~  123 (200)
T d2phla1         119 LRIIQ  123 (200)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=94.90  E-value=0.089  Score=45.53  Aligned_cols=74  Identities=15%  Similarity=0.317  Sum_probs=52.6

Q ss_pred             ceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEe--CC-----------------cEEEeCcccEEEEcCCCcEEE
Q 013464          362 EFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLT--AS-----------------HNDAVAEGDVLFAPANTEINI  421 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~--~~-----------------~~~~l~~G~~~~Ipa~~~~~i  421 (442)
                      ...+.++++.++.-.... ..+...|++|++|++.+..  .+                 .+..|++||+++||++....+
T Consensus        41 ~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~  120 (185)
T d1uika2          41 DVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVV  120 (185)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEECTTCEEEECTTCCEEE
T ss_pred             CchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEE
Confidence            368888888876432211 1356899999999998852  11                 156799999999999998777


Q ss_pred             EecCcEEEEEEEcC
Q 013464          422 TTSSKLQLYRAGVN  435 (442)
Q Consensus       422 ~~~~~~~~~~a~~~  435 (442)
                      .++++..++...+.
T Consensus       121 ~n~~d~~~v~~~~~  134 (185)
T d1uika2         121 NATSDLNFFAFGIN  134 (185)
T ss_dssp             EESSSEEEEEEEET
T ss_pred             EcCCCccEEEEEEc
Confidence            77677776555443

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.2  Score=44.49  Aligned_cols=144  Identities=15%  Similarity=0.082  Sum_probs=78.5

Q ss_pred             cceeeECCCCCEEEecCCCceeeecCcE-EEEeecCCceEEc---CCCCCCCChhHhhccccccCCCccccccccCC-Cc
Q 013464          278 FFNYVKLNPGQALYLGANEPHAYISGEC-IECMATSDNVVRA---GLTPKHRDVQTLCSMLTYKQGFPEILKGFPLS-PY  352 (442)
Q Consensus       278 ~Ln~v~l~pGd~i~ipaGt~HAy~~G~~-vEim~~SDnt~R~---glt~k~~dv~~ll~~l~~~~~~~~~~~~~~~~-~~  352 (442)
                      +=|...++|||+=++-||      +|.. -|....+|..+|.   =+.|+...++--.....++......+...+.. ..
T Consensus        79 ~G~~~~i~~G~vq~mtAG------~Gi~HsE~~~~~~~~~~~lQiWi~P~~~~~~p~y~~~~~~~~~~~~~~~~~~g~~~  152 (231)
T d1tq5a1          79 MGNKEQVPAGEFQIMSAG------TGIRHSEYNPSSTERLHLYQIWIMPEENGITPRYEQRRFDAVQGKQLVLSPDARDG  152 (231)
T ss_dssp             SSCEEEEETTCEEEEECT------TCEEEEEECCCSSCCEEEEEEEECCSSCSCCCEEEEECCCCCSSEEEEEESSCGGG
T ss_pred             CCCcEEECCCcEEEEecC------CcEEEEeeccccCCCeEEEEEEeCChhHCCCcccccceeccccceEEecccccccC
Confidence            446677777777777664      3555 4765556655662   12333322211111122211111111000100 11


Q ss_pred             EEEECCCCCceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEE
Q 013464          353 ITRYLPPFDEFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYR  431 (442)
Q Consensus       353 ~~~y~~p~~~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~  431 (442)
                      ....   ..+-.+..+.+.++.+..++.. +....+.|++|+++|..    ..+..||.+.+..+..++|++.++.+++.
T Consensus       153 ~~~~---~~~~~l~~~~l~~g~~~~~~l~~~~~~~lyvi~G~l~i~g----~~l~~gd~~~l~~~~~l~i~A~~~a~~LL  225 (231)
T d1tq5a1         153 SLKV---HQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTING----VKASTSDGLAIWDEQAISIHADSDSEVLL  225 (231)
T ss_dssp             CEEC---SSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEETT----EEEETTCEEEEESCSCEEEEESSSEEEEE
T ss_pred             Cccc---ccccEEEEEEecCCceEEEcccCCccEEEEEEeeEEEECC----EEccCCCeEEECCCCeEEEEECCCCEEEE
Confidence            1111   2345667777877766554322 33567889999999843    57899999999877779998866777765


Q ss_pred             EEc
Q 013464          432 AGV  434 (442)
Q Consensus       432 a~~  434 (442)
                      ...
T Consensus       226 ~~g  228 (231)
T d1tq5a1         226 FDL  228 (231)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            443

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=94.27  E-value=0.092  Score=43.58  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             CCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEE--EEe-cCcEEEEEEE
Q 013464          381 VSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEIN--ITT-SSKLQLYRAG  433 (442)
Q Consensus       381 ~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~--i~~-~~~~~~~~a~  433 (442)
                      ...+.+++|++|+|.+..+++.+.+++|+.++||++..-+  ... +...+++...
T Consensus        36 ~~~Y~l~yv~~G~G~~~i~~~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~   91 (161)
T d2arca_          36 MKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVY   91 (161)
T ss_dssp             CSSEEEEEEEEECEEEEETTEEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEE
T ss_pred             CCCEEEEEEEEeEEEEEECCEEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEE
Confidence            3569999999999999999999999999999999998633  322 2345655443

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=93.84  E-value=0.18  Score=43.05  Aligned_cols=73  Identities=15%  Similarity=0.189  Sum_probs=49.3

Q ss_pred             ceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe--C-C-c--EEEeCcccEEEEcCCCc-EEEEecCcEEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT--A-S-H--NDAVAEGDVLFAPANTE-INITTSSKLQLYRAG  433 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~--~-~-~--~~~l~~G~~~~Ipa~~~-~~i~~~~~~~~~~a~  433 (442)
                      ..++.++.+.++.-... ...+...+++|++|++++..  . + +  +..|++||.++||++.. +...+++.+.++...
T Consensus        46 gls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~~~~~~~v~~~  125 (173)
T d1od5a2          46 GLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFK  125 (173)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             cceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEECCCCEEEEEcCCCceEEEEee
Confidence            46899999987753321 11356799999999999963  2 2 2  34599999999999998 443334444444443


Q ss_pred             c
Q 013464          434 V  434 (442)
Q Consensus       434 ~  434 (442)
                      .
T Consensus       126 ~  126 (173)
T d1od5a2         126 T  126 (173)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=93.77  E-value=0.16  Score=48.14  Aligned_cols=78  Identities=12%  Similarity=0.058  Sum_probs=56.6

Q ss_pred             CCceEEEEEEeCCCCeee---ccCCCCeEEEEEEcCcEEEEe-----CCcEEEeCcccEEEEcCCCcEEEEe-cCcEEEE
Q 013464          360 FDEFEVDCCILPKGTSSV---FPAVSGPSIFLVTDGEGSMLT-----ASHNDAVAEGDVLFAPANTEINITT-SSKLQLY  430 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~---~~~~~~~~il~v~~G~~~i~~-----~~~~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~  430 (442)
                      ...|++.++.++.+...-   ..-.....+++|++|++++..     +++...+.+||+++||++..-.+++ +.+.+++
T Consensus        43 ~g~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~~~~~l  122 (348)
T d1juha_          43 GYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMT  122 (348)
T ss_dssp             TTSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTEEEE
T ss_pred             CCeEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCCCcEEE
Confidence            456999999998764321   111235789999999999864     2357899999999999999755555 4467777


Q ss_pred             EEEcCCC
Q 013464          431 RAGVNSR  437 (442)
Q Consensus       431 ~a~~~~~  437 (442)
                      .++.|..
T Consensus       123 ~v~~pg~  129 (348)
T d1juha_         123 GVIVPGG  129 (348)
T ss_dssp             EEEESSC
T ss_pred             EEECCCc
Confidence            7776653

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.73  E-value=0.23  Score=42.99  Aligned_cols=73  Identities=12%  Similarity=0.257  Sum_probs=48.5

Q ss_pred             CceEEEEEEeCCCCee--------e-ccCCCCeEEEEEEcCcEEEEeC-----CcEEEeCcccEEEEcCCCcEEEEe--c
Q 013464          361 DEFEVDCCILPKGTSS--------V-FPAVSGPSIFLVTDGEGSMLTA-----SHNDAVAEGDVLFAPANTEINITT--S  424 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~--------~-~~~~~~~~il~v~~G~~~i~~~-----~~~~~l~~G~~~~Ipa~~~~~i~~--~  424 (442)
                      ..+.+....+.+|..-        . ....+...+++|++|++++...     ...+.+++||+++||++..-.+.+  +
T Consensus        65 ~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gd  144 (190)
T d1x82a_          65 GDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             TCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCC
Confidence            4566666666665210        0 0112357899999999999642     235789999999999999855655  4


Q ss_pred             CcEEEEEEE
Q 013464          425 SKLQLYRAG  433 (442)
Q Consensus       425 ~~~~~~~a~  433 (442)
                      .++.++..+
T Consensus       145 e~L~~l~v~  153 (190)
T d1x82a_         145 EPFIFLAIY  153 (190)
T ss_dssp             SCEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            456555544

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=93.46  E-value=0.2  Score=42.72  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=49.2

Q ss_pred             ceEEEEEEeCCCCeeec-cCCCCeEEEEEEcCcEEEEe---CC-c--EEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464          362 EFEVDCCILPKGTSSVF-PAVSGPSIFLVTDGEGSMLT---AS-H--NDAVAEGDVLFAPANTEINITT-SSKLQLYRAG  433 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~-~~~~~~~il~v~~G~~~i~~---~~-~--~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~  433 (442)
                      ..++.++.+.++.-... ...+...+++|++|++.+..   ++ +  +..|++||.++||++....+.+ +.+..++...
T Consensus        41 ~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~~~~~v~~~  120 (174)
T d1fxza2          41 RLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFK  120 (174)
T ss_dssp             TCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEE
T ss_pred             CceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCCCEEEEEeCCCCeEEEEEE
Confidence            57888888887643221 11356799999999999973   23 3  3459999999999998854544 4444544443

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=93.36  E-value=0.13  Score=46.39  Aligned_cols=70  Identities=14%  Similarity=0.237  Sum_probs=48.2

Q ss_pred             ceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEeC---------------------------CcEEEeCcccEEEEc
Q 013464          362 EFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLTA---------------------------SHNDAVAEGDVLFAP  414 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~~---------------------------~~~~~l~~G~~~~Ip  414 (442)
                      ...+.|.++.++.-.-..-.+.+.|++|++|.|.+..-                           .....|++||++.||
T Consensus        38 gV~~~r~~I~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iP  117 (239)
T d1fxza1          38 GVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVP  117 (239)
T ss_dssp             TCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEEC
T ss_pred             cchhheeeeccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhhhhhhccccCCEEEec
Confidence            46677888876542211124679999999999988531                           114589999999999


Q ss_pred             CCCcEEEEecCcEEEEE
Q 013464          415 ANTEINITTSSKLQLYR  431 (442)
Q Consensus       415 a~~~~~i~~~~~~~~~~  431 (442)
                      |++...+.++++-.++.
T Consensus       118 AG~~~w~~N~gn~~Lv~  134 (239)
T d1fxza1         118 TGVAWWMYNNEDTPVVA  134 (239)
T ss_dssp             TTCEEEEEECSSSCEEE
T ss_pred             CCceEEEEeCCCCcEEE
Confidence            99996676654443333

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.13  Score=47.72  Aligned_cols=71  Identities=10%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             CceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEE-eCCcEEEeCcccEEEEcCCCcEEEEe--cCcEEEEE
Q 013464          361 DEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSML-TASHNDAVAEGDVLFAPANTEINITT--SSKLQLYR  431 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~-~~~~~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~~  431 (442)
                      +.|.+....+.+|.....-.+..-.+.+|++|+++++ .+++...+++||++++|++..-.+.+  ++.+.++.
T Consensus        52 ~~l~~~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t~~~~~~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~  125 (308)
T d2d40a1          52 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLD  125 (308)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             ccceeeeEEECCCCccccccCchhheEEEEEeeEEEEEecCEEEEecCCCEEEeCCCceEEeEECCCCCEEEEE
Confidence            4577767777777654333345678999999999875 57788999999999999999866665  33444443

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=93.21  E-value=0.31  Score=42.64  Aligned_cols=72  Identities=11%  Similarity=0.041  Sum_probs=50.3

Q ss_pred             ceEEEEEEeCCCCeeeccCC-CCeEEEEEEcCcEEEEeC------Cc--EEEeCcccEEEEcCCCcEEEEe--cCcEEEE
Q 013464          362 EFEVDCCILPKGTSSVFPAV-SGPSIFLVTDGEGSMLTA------SH--NDAVAEGDVLFAPANTEINITT--SSKLQLY  430 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~~~-~~~~il~v~~G~~~i~~~------~~--~~~l~~G~~~~Ipa~~~~~i~~--~~~~~~~  430 (442)
                      -.++.|+.+.++.....-.+ ....|++|++|++++..-      +.  ...|++||.++||.+.-....+  ++++.++
T Consensus        71 glS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i  150 (201)
T d2et1a1          71 GVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMV  150 (201)
T ss_dssp             SCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEE
T ss_pred             ceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEE
Confidence            37889999987754332222 356899999999988541      12  5679999999999998733333  4556666


Q ss_pred             EEE
Q 013464          431 RAG  433 (442)
Q Consensus       431 ~a~  433 (442)
                      .++
T Consensus       151 ~~f  153 (201)
T d2et1a1         151 VSF  153 (201)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.89  E-value=0.1  Score=47.54  Aligned_cols=52  Identities=12%  Similarity=0.222  Sum_probs=44.0

Q ss_pred             EEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc-EEEEe---cCcEEEEEEEcCC
Q 013464          385 SIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE-INITT---SSKLQLYRAGVNS  436 (442)
Q Consensus       385 ~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~-~~i~~---~~~~~~~~a~~~~  436 (442)
                      -.++++.|.++|+.+|+++.|.+.|+++||.+.+ +++.+   .+++++|++..|.
T Consensus        76 lgiVnigG~g~V~VDG~~f~l~~~D~lYvg~G~~~V~f~s~da~~pa~fyi~SAPA  131 (260)
T d1ywka1          76 LGVINIGGPGFIEIDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCVPA  131 (260)
T ss_dssp             EEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEEC
T ss_pred             EEEEEeCCcEEEEECCEEEecCCCcEEEECCCCceEEEeccCCCCCcEEEEEeecc
Confidence            4677889999999999999999999999999986 88875   3567888877654

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=92.68  E-value=0.23  Score=44.88  Aligned_cols=70  Identities=20%  Similarity=0.267  Sum_probs=48.7

Q ss_pred             CceEEEEEEeCCCCeeeccC-CCCeEEEEEEcCcEEEEeC--C--c--------------------------EEEeCccc
Q 013464          361 DEFEVDCCILPKGTSSVFPA-VSGPSIFLVTDGEGSMLTA--S--H--------------------------NDAVAEGD  409 (442)
Q Consensus       361 ~~F~l~~i~~~~~~~~~~~~-~~~~~il~v~~G~~~i~~~--~--~--------------------------~~~l~~G~  409 (442)
                      ..-.+.|.++.++.- .++. .+.+.|++|++|.|.+..-  +  +                          ...|++||
T Consensus        37 agV~~~r~~I~p~gL-~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GD  115 (245)
T d1od5a1          37 AGVTVSKRTLNRNGL-HLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGD  115 (245)
T ss_dssp             HTCEEEEEEECTTEE-EEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------EEESCEEEEETTE
T ss_pred             cCceeEEEEEcCCcc-ccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccccceeeeecccCCC
Confidence            345778888876643 2222 4679999999999988531  1  1                          23499999


Q ss_pred             EEEEcCCCcEEEEecCcEEEEE
Q 013464          410 VLFAPANTEINITTSSKLQLYR  431 (442)
Q Consensus       410 ~~~Ipa~~~~~i~~~~~~~~~~  431 (442)
                      ++.|||++.+.+.++++-.++.
T Consensus       116 Vi~iPAG~~~w~yNdgn~~Lv~  137 (245)
T d1od5a1         116 VLVIPPGVPYWTYNTGDEPVVA  137 (245)
T ss_dssp             EEEECTTCCEEEEECSSSCEEE
T ss_pred             EEEECCCceEEEEeCCCCcEEE
Confidence            9999999997777755544444

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=90.87  E-value=0.058  Score=43.55  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=21.1

Q ss_pred             eeECCCCCEEEecCCCceeee--cCcE
Q 013464          281 YVKLNPGQALYLGANEPHAYI--SGEC  305 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~--~G~~  305 (442)
                      .+.++|||++|+|++++|++.  +|+-
T Consensus        87 ~~~l~~GDsi~~~~~~pH~~~n~~g~~  113 (122)
T d2bnma2          87 EALLPTGASMFVEEHVPHAFTAAKGTG  113 (122)
T ss_dssp             EEEECTTCEEEECTTCCEEEEESTTSC
T ss_pred             EEEEccCcEEEeCCCCCEEEEcCCCCc
Confidence            457999999999999999987  3653

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.24  Score=45.37  Aligned_cols=52  Identities=10%  Similarity=0.226  Sum_probs=43.3

Q ss_pred             EEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCc-EEEEe---cCcEEEEEEEcCC
Q 013464          385 SIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTE-INITT---SSKLQLYRAGVNS  436 (442)
Q Consensus       385 ~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~-~~i~~---~~~~~~~~a~~~~  436 (442)
                      -.++++.|.++|+.+|+++.|.+.|++||+.+.+ +.+.+   ..+++++.+..|.
T Consensus        78 lgiVnlgG~g~V~VDG~~feL~~rd~lYvg~G~~~V~f~s~da~~pa~fyl~SAPA  133 (277)
T d1xrua1          78 LGVINIGGAGTITVDGQCYEIGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPA  133 (277)
T ss_dssp             EEEEECSSCEEEEETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEEEC
T ss_pred             EEEEEeCCCEEEEECCEEEeeCCccEEEeCCCCceEEEeccCCCCCcEEEEEeccc
Confidence            4577889999999999999999999999999986 88875   3457888877654

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=90.11  E-value=0.083  Score=41.77  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             eeECCCCCEEEecCCCceeee-cCc
Q 013464          281 YVKLNPGQALYLGANEPHAYI-SGE  304 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~-~G~  304 (442)
                      .+.++|||++++|+|.+|++- .|+
T Consensus        79 ~~~l~~Gd~~~ip~g~~H~~~N~g~  103 (115)
T d1o4ta_          79 DVPIKAGDVCFTDSGESHSIENTGN  103 (115)
T ss_dssp             EEEEETTEEEEECTTCEEEEECCSS
T ss_pred             eEEeeccEEEEECCCCeEEEEECCC
Confidence            467999999999999999976 444

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.10  E-value=0.064  Score=42.29  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ...+++||++++|+|++|++-
T Consensus        76 ~~~l~~Gd~~~ip~~~~H~~~   96 (112)
T d1yhfa1          76 TYRVAEGQTIVMPAGIPHALY   96 (112)
T ss_dssp             EEEEETTCEEEECTTSCEEEE
T ss_pred             EEEecCCEEEEcCCCCeEEeE
Confidence            467999999999999999974

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.10  E-value=0.32  Score=41.80  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=43.0

Q ss_pred             CCeEEEEEEcCcEEEEeC---Cc--EEEeCcccEEEEcCCCc--EEEEecCcEEEEEEEcCCC
Q 013464          382 SGPSIFLVTDGEGSMLTA---SH--NDAVAEGDVLFAPANTE--INITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       382 ~~~~il~v~~G~~~i~~~---~~--~~~l~~G~~~~Ipa~~~--~~i~~~~~~~~~~a~~~~~  437 (442)
                      ....|..|++|+|.+...   +.  .+.+.+||.+.|||++.  +++..+..+..+|-|...+
T Consensus        91 ~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~~v~aiRlF~~~~  153 (179)
T d1vr3a1          91 LDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEP  153 (179)
T ss_dssp             SSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSSC
T ss_pred             CCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCCCEEEEEEECCCC
Confidence            457899999999998642   22  47789999999999997  5554455688888887655

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=89.89  E-value=0.7  Score=44.03  Aligned_cols=75  Identities=13%  Similarity=0.104  Sum_probs=52.2

Q ss_pred             CCceEEEEEEeCCCCeeeccCCCCeEEEEEEcCcEEEEe---CCc--EEEeCcccEEEEcCCCcEEEEe-cCcEEEEEEE
Q 013464          360 FDEFEVDCCILPKGTSSVFPAVSGPSIFLVTDGEGSMLT---ASH--NDAVAEGDVLFAPANTEINITT-SSKLQLYRAG  433 (442)
Q Consensus       360 ~~~F~l~~i~~~~~~~~~~~~~~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~Ipa~~~~~i~~-~~~~~~~~a~  433 (442)
                      ....+..++++.++.-...--+....+.+|++|++.++.   +++  ...|++||.+++|++....+.+ +.+.+++.++
T Consensus        69 ~~~~a~~~~~L~pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf  148 (372)
T d1j58a_          69 SENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVF  148 (372)
T ss_dssp             CSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEE
T ss_pred             hhhhhheEEEECCCcCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCCEEEEEeCCCCcEEEEEE
Confidence            456788888888775433211234589999999999863   233  3459999999999999866665 3445666655


Q ss_pred             c
Q 013464          434 V  434 (442)
Q Consensus       434 ~  434 (442)
                      .
T Consensus       149 ~  149 (372)
T d1j58a_         149 D  149 (372)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=89.37  E-value=0.097  Score=40.18  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=23.3

Q ss_pred             eeECCCCCEEEecCCCceeee-cCc--E--EEEeec
Q 013464          281 YVKLNPGQALYLGANEPHAYI-SGE--C--IECMAT  311 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~-~G~--~--vEim~~  311 (442)
                      .+.+++||++++|+|++|++. .|+  +  +.|.++
T Consensus        68 ~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~P  103 (105)
T d1v70a_          68 EALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP  103 (105)
T ss_dssp             EEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred             EEEecceEEEEeCCCCEEEeEECCCCCEEEEEEECC
Confidence            457999999999999999975 233  3  466554

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=88.58  E-value=0.11  Score=39.93  Aligned_cols=21  Identities=24%  Similarity=0.623  Sum_probs=19.3

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.|++||++++|+|++|+|.
T Consensus        63 ~~~l~~GD~~~~~~~~~H~~~   83 (99)
T d1y9qa2          63 WHELQQGEHIRFFSDQPHGYA   83 (99)
T ss_dssp             EEEECTTCEEEEECSSSEEEE
T ss_pred             EEEecCCCEEEECCCCeEEEE
Confidence            567999999999999999985

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=88.58  E-value=0.081  Score=45.20  Aligned_cols=31  Identities=16%  Similarity=0.151  Sum_probs=24.2

Q ss_pred             ccchhhcceeeECCCCCEEEecCCCceeeec
Q 013464          272 GVIAAFFFNYVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       272 G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      |++.+.......+++||.++||+|.+|+...
T Consensus        78 ~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n  108 (170)
T d1uija1          78 TLVNNDDRDSYNLHPGDAQRIPAGTTYYLVN  108 (170)
T ss_dssp             EEECSSCEEEEEECTTEEEEECTTCEEEEEE
T ss_pred             EEEeCCCcEEEEecCCcEEEECCCCeEEEEE
Confidence            3444455667789999999999999998653

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=88.33  E-value=1.2  Score=41.83  Aligned_cols=56  Identities=18%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             EEeCCCCeeeccCCCCeEEEEEEcCcEEEE-eCCcEEEeCcccEEEEcCCCcEEEEe
Q 013464          368 CILPKGTSSVFPAVSGPSIFLVTDGEGSML-TASHNDAVAEGDVLFAPANTEINITT  423 (442)
Q Consensus       368 i~~~~~~~~~~~~~~~~~il~v~~G~~~i~-~~~~~~~l~~G~~~~Ipa~~~~~i~~  423 (442)
                      ..+.+|.....-.+....+.+|++|+|..+ .+++...+.+||.+++|++..-...+
T Consensus        92 ~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t~v~g~~~~~~~GD~~~~P~~~~H~~~n  148 (351)
T d2phda1          92 QYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMN  148 (351)
T ss_dssp             EEECTTCEEEEEEESSCEEEEEEECEEEEEEETTEEEEEETTCEEEECTTCCEEEEE
T ss_pred             EEECCCCcCCccccccceeEEEEECCcEEEEECCEEEEEeCCCEEEeCCCceEEEEE
Confidence            335566544333345788999999999764 48889999999999999999755554

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.56  E-value=0.13  Score=44.37  Aligned_cols=55  Identities=15%  Similarity=0.253  Sum_probs=40.1

Q ss_pred             CeEEEEEEcCcEEEE--eCCc--EEEeCcccEEEEcCCCc--EEEEecCcEEEEEEEcCCC
Q 013464          383 GPSIFLVTDGEGSML--TASH--NDAVAEGDVLFAPANTE--INITTSSKLQLYRAGVNSR  437 (442)
Q Consensus       383 ~~~il~v~~G~~~i~--~~~~--~~~l~~G~~~~Ipa~~~--~~i~~~~~~~~~~a~~~~~  437 (442)
                      .-.|.+|++|+|.+.  .+++  .+.+++||.+.||+++.  +++..+..+..++-|...+
T Consensus       100 ~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~~~  160 (179)
T d1zrra1         100 EDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPE  160 (179)
T ss_dssp             SCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCGG
T ss_pred             CceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecCCC
Confidence            467888999998753  3333  46799999999999997  5554455677777775543

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=87.44  E-value=0.13  Score=43.32  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             eeeECCCCCEEEecCCCceeee-cCc
Q 013464          280 NYVKLNPGQALYLGANEPHAYI-SGE  304 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~-~G~  304 (442)
                      ..+.++|||+++||+|++|.+. .|+
T Consensus        88 ~~~~l~~Gd~~~iP~~~~H~~~N~g~  113 (160)
T d1lr5a_          88 QEIPFFQNTTFSIPVNDPHQVWNSDE  113 (160)
T ss_dssp             EEEEECTTEEEEECTTCCEEEECCCS
T ss_pred             eEEEecCCCEEEeCCCCcEEEEECCC
Confidence            5678999999999999999987 353

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.89  E-value=0.13  Score=41.44  Aligned_cols=21  Identities=5%  Similarity=0.211  Sum_probs=18.9

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+.++|||++|+|+|+.|.+-
T Consensus        91 ~~~l~~Gd~~~~p~g~~h~~~  111 (128)
T d2pyta1          91 TMIAKAGDVMFIPKGSSIEFG  111 (128)
T ss_dssp             EEEEETTCEEEECTTCEEEEE
T ss_pred             EEEecCCCEEEECCCCEEEEE
Confidence            466999999999999999975

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.49  E-value=0.13  Score=40.27  Aligned_cols=20  Identities=15%  Similarity=0.157  Sum_probs=18.1

Q ss_pred             eECCCCCEEEecCCCceeee
Q 013464          282 VKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       282 v~l~pGd~i~ipaGt~HAy~  301 (442)
                      +.+++||++++|+|++|++-
T Consensus        67 ~~v~~Gd~i~ip~~~~H~~~   86 (108)
T d2b8ma1          67 HNYKEGNIVYVPFNVKMLIQ   86 (108)
T ss_dssp             EEEETTCEEEECTTCEEEEE
T ss_pred             EEeecceEeeccCCceEEEE
Confidence            45899999999999999975

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=86.34  E-value=0.13  Score=40.39  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=19.1

Q ss_pred             eeECCCCCEEEecCCCceeee
Q 013464          281 YVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ...+++||++|+|+|.+|.+-
T Consensus        75 ~~~l~~Gd~~~ip~~~~H~~~   95 (114)
T d1vj2a_          75 EETVEEGFYIFVEPNEIHGFR   95 (114)
T ss_dssp             EEEEETTEEEEECTTCCEEEE
T ss_pred             eeEEecCeEEEEcCCCeEEEE
Confidence            466999999999999999987

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=86.21  E-value=0.14  Score=41.94  Aligned_cols=20  Identities=20%  Similarity=0.071  Sum_probs=18.0

Q ss_pred             eECCCCCEEEecCCCceeee
Q 013464          282 VKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       282 v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ..++|||++|||||+.|.++
T Consensus        76 ~~~~~Gd~v~ippg~~H~~~   95 (134)
T d2f4pa1          76 RILKKGDVVEIPPNVVHWHG   95 (134)
T ss_dssp             EEEETTCEEEECTTCCEEEE
T ss_pred             EEEcCCCeEEECCCCceECc
Confidence            45999999999999999876

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=85.70  E-value=0.23  Score=43.50  Aligned_cols=30  Identities=17%  Similarity=0.100  Sum_probs=24.0

Q ss_pred             ccchhhcceeeECCCCCEEEecCCCceeee
Q 013464          272 GVIAAFFFNYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       272 G~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      |++.+.....+.|++||.++||+|++|...
T Consensus        74 ~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~  103 (203)
T d1uika1          74 TLVNNDDRDSYNLQSGDALRVPAGTTYYVV  103 (203)
T ss_dssp             EEECSSCEEEEEEETTEEEEECTTCEEEEE
T ss_pred             EEEeCCCeEEEEecCCCEEEECCCCeEEEE
Confidence            344445666788999999999999999765

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=6.9  Score=35.06  Aligned_cols=70  Identities=7%  Similarity=0.029  Sum_probs=49.9

Q ss_pred             ceEEEEEEeCCCCeeecc-CCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEec--CcEEEEE
Q 013464          362 EFEVDCCILPKGTSSVFP-AVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTS--SKLQLYR  431 (442)
Q Consensus       362 ~F~l~~i~~~~~~~~~~~-~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~--~~~~~~~  431 (442)
                      +-.+..++++.+..+.++ +...-..+.|++|++.+........+..++.+++.++..++++..  .+.+++.
T Consensus       166 ~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g~~~~~~l~~~~~~~l~~gd~~~i~~~~~~~a~~LL  238 (288)
T d1j1la_         166 PTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL  238 (288)
T ss_dssp             CEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEE
T ss_pred             chhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecCcccceeecCceEEEEcCCCeEEEEeCCCCCCEEEE
Confidence            445666778777665544 234467889999999998766667899999999988887777652  3455433

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=84.75  E-value=0.16  Score=43.58  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             cchhhcceeeECCCCCEEEecCCCceeee
Q 013464          273 VIAAFFFNYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       273 ~~~~~~Ln~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ++.+..-....|++||.++||+|++|.+.
T Consensus        76 ~v~~~~~~~~~l~~GDv~~iP~G~~h~~~  104 (178)
T d1dgwa_          76 LVNPDGRDTYKLDQGDAIKIQAGTPFYLI  104 (178)
T ss_dssp             EEETTEEEEEEEETTEEEEECTTCCEEEE
T ss_pred             EecCCceEEEEecCCCEEEECCCCeEEEE
Confidence            33344556778999999999999999875

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=83.80  E-value=0.24  Score=43.26  Aligned_cols=19  Identities=5%  Similarity=-0.158  Sum_probs=17.7

Q ss_pred             ECCCCCEEEecCCCceeee
Q 013464          283 KLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       283 ~l~pGd~i~ipaGt~HAy~  301 (442)
                      .+++||.++||||++|++.
T Consensus        93 ~l~~GDv~~iPaG~~~~~~  111 (200)
T d2phla1          93 NPIFSDHQKIPAGTIFYLV  111 (200)
T ss_dssp             CTTSCSEEEECTTCEEEEE
T ss_pred             CccCCCEEEECCCCeEEEE
Confidence            6999999999999999876

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.42  E-value=2.8  Score=40.40  Aligned_cols=71  Identities=10%  Similarity=0.112  Sum_probs=53.2

Q ss_pred             eEEEEEEeCCCC-eeeccCCCCeEEEEEEcCcEEEEeCCcEEEeCcccEEEEcCCCcEEEEecCcEEEEEEE
Q 013464          363 FEVDCCILPKGT-SSVFPAVSGPSIFLVTDGEGSMLTASHNDAVAEGDVLFAPANTEINITTSSKLQLYRAG  433 (442)
Q Consensus       363 F~l~~i~~~~~~-~~~~~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~Ipa~~~~~i~~~~~~~~~~a~  433 (442)
                      ..+..+.++.+- ...+.+.++=.++++-+|++.|.+.=..+.+++||.++||-++.+++..+++.+.|+.-
T Consensus       130 ~aihiy~~n~sM~~~~f~NADGDeLi~~~~Gsg~l~TefG~L~v~pGDyvVIPRG~~frv~~~~~~r~yiiE  201 (439)
T d1eyba_         130 LAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILE  201 (439)
T ss_dssp             EEEEEEEECSCCCSEEEEESSEEEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEECSSSEEEEEEE
T ss_pred             cEEEEEecCCCCccceeEcCCCCEEEEEEeCcEEEEEeeeEEEecCCcEEEecCceEEEEecCCCceEEEEe
Confidence            445555555442 11234567888899999999999987789999999999999999888766666666643

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=83.02  E-value=2.1  Score=32.49  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             eeccCCCCeEEEEEEcCcEEEEeCC--cEEEeCcccEEEEcCCCcEEEEec
Q 013464          376 SVFPAVSGPSIFLVTDGEGSMLTAS--HNDAVAEGDVLFAPANTEINITTS  424 (442)
Q Consensus       376 ~~~~~~~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~Ipa~~~~~i~~~  424 (442)
                      +.+.+ ..+.+..|++|+.++.-.+  +..+++.|++|-|||+..+.++-.
T Consensus        34 Y~F~T-~~~E~MeivsG~l~V~lpg~~ew~~~~~G~sF~Vpans~F~ikv~   83 (93)
T d2oyza1          34 YTFGT-QAPERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVK   83 (93)
T ss_dssp             EEEEE-SSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEES
T ss_pred             EEEcC-CCCEEEEEEeeEEEEECCCCcccEEeCCCCeEEECCCCEEEEEEC
Confidence            45543 5789999999999997543  469999999999999998888764

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=82.63  E-value=0.33  Score=39.92  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             eeeECCCCCEEEecCCCceeee
Q 013464          280 NYVKLNPGQALYLGANEPHAYI  301 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~  301 (442)
                      ..+.++|||.++||+|++|.|.
T Consensus        56 ~~y~l~~Gdl~li~P~~~H~y~   77 (161)
T d2arca_          56 REFVCRPGDILLFPPGEIHHYG   77 (161)
T ss_dssp             EEEEECTTCEEEECTTCCEEEE
T ss_pred             EEEEecCCeEEEEcCCCcEEEE
Confidence            4678999999999999999975

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=81.27  E-value=0.32  Score=44.28  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             eeeECCCCCEEEecCCCceeeec
Q 013464          280 NYVKLNPGQALYLGANEPHAYIS  302 (442)
Q Consensus       280 n~v~l~pGd~i~ipaGt~HAy~~  302 (442)
                      -.+.|+|||++|||+|..|.-.+
T Consensus       199 ~~~~L~pGDvLYiP~gw~H~v~s  221 (319)
T d1vrba1         199 EIVNLTPGTMLYLPRGLWHSTKS  221 (319)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEC
T ss_pred             EEEEECCCCEEEeCCCceEEeEe
Confidence            46789999999999999998553

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.66  E-value=0.4  Score=41.16  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             eeECCCCCEEEecCCCceeeecC
Q 013464          281 YVKLNPGQALYLGANEPHAYISG  303 (442)
Q Consensus       281 ~v~l~pGd~i~ipaGt~HAy~~G  303 (442)
                      .+.+++||.|.|||||.|-...|
T Consensus       123 ~v~~~~GDli~vPag~~H~F~~~  145 (179)
T d1zrra1         123 QVLCEKNDLISVPAHTPHWFDMG  145 (179)
T ss_dssp             EEECCCSCEEEECTTCCBCCCCS
T ss_pred             EEEEcCCCEEEeCCCCeEccccC
Confidence            57899999999999999987544