Citrus Sinensis ID: 013475

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MDLLCNAYSNTSDDEPEPASKHEPELRSIFSPPSKRPRPDYPYPQTKPHPLHRPNQQHSGLRTEASVAGRYMSKRERALLGPGIPAATDPKPDPSAVVAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEEccEEcccEEEEEEcccccEEEcccccccEEEEcccccccEEEccccccEEEEEEccccccEEEEccccccEEEEEccccccEEEEccccccccccEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccccccccccEEEEEcccccEEEEEEccccccccEEEEcccccEEEEEEcccEEEEEEcccccccccEEEEEccccccccEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEc
ccEEEEcccccccccccccccccccEEEEEccccccEcccccccccccccccccccccccccccccccEEEEccccccEEEEcccccEEEEEcccccEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccccccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEcc
mdllcnaysntsddepepaskhepelrsifsppskrprpdypypqtkphplhrpnqqhsglrtEASVAGRYMSKRErallgpgipaatdpkpdpsAVVAAAQVLGSISDAYLRQDILSLLRHlpkshvrrskipgrlsTALChhtkavnsinwspTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLScgydcssrlVDVEKGIETQSFREELAVRVVKfhpensnlflsggskgllrlwdirTGKVAHEYIQSlgpildveftingkqfvsssdvsgsnmsenSIVVWDvsrevplskqvyveaytcpcvrhhpfdpyfvaqsngnyiaifsstppfrldkfkryeshgvsgfpikcsfsldgeklvsgssdgsiyfynCRSSELERKIKAYEQACIDvafhpilpniigscswngdvsvye
mdllcnaysntsddepepaskhepelrsifsppskrprpdyPYPQTKphplhrpnqqhsgLRTEASVAGRYMSKRERALLGPGIPAATDPKPDPSAVVAAAQVLGSISDAYLRQDILSLLRhlpkshvrrskipgrlSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKfhpensnlflsggskglLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFvsssdvsgsnmSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPniigscswngDVSVYE
MDLLCNAYSNTSDDEPEPASKHEPELRSIFSPPSKRPRPDYPYPQTKPHPLHRPNQQHSGLRTEASVAGRYMSKRERALLGPGIPAATDPKPDPSAVVAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFvsssdvsgsnmsensIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE
************************************************************************************************VVAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFV************NSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVS***
******************************************************************************************************VLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE
MDLLCNAYS******************SIFSPPSKRPRPDYPYPQTKPHPLHRPNQQHSGLRTEASVAGRYMSKRERALLGPGIPAATDPKPDPSAVVAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVS*********SENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE
*DLLCNAYSNTSDDEPEPASKHEPELRSIFSPPSKRPRPDYPYP*TKPHPLHRPNQQHSGLRTEASVAGRYMSKRERALLGPGIPAATDPKPDPSAVVAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
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MDLLCNAYSNTSDDEPEPASKHEPELRSIFSPPSKRPRPDYPYPQTKPHPLHRPNQQHSGLRTEASVAGRYMSKRERALLGPGIPAATDPKPDPSAVVAAAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
E9Q349535 WD repeat-containing prot yes no 0.712 0.588 0.371 1e-67
Q64LD2544 WD repeat-containing prot yes no 0.746 0.606 0.342 2e-67
Q9DC48579 Pre-mRNA-processing facto no no 0.683 0.521 0.298 3e-38
O60508579 Pre-mRNA-processing facto no no 0.683 0.521 0.294 1e-37
O43071558 Pre-mRNA-processing facto yes no 0.642 0.508 0.296 1e-32
Q54KL5335 WD repeat-containing prot no no 0.656 0.865 0.284 3e-24
Q2KIG2334 WD repeat-containing prot no no 0.653 0.865 0.281 9e-23
Q498M4334 WD repeat-containing prot no no 0.653 0.865 0.281 9e-23
P61965334 WD repeat-containing prot no no 0.653 0.865 0.281 9e-23
P61964334 WD repeat-containing prot no no 0.653 0.865 0.281 9e-23
>sp|E9Q349|WDR25_MOUSE WD repeat-containing protein 25 OS=Mus musculus GN=Wdr25 PE=2 SV=1 Back     alignment and function desciption
 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 191/318 (60%), Gaps = 3/318 (0%)

Query: 126 SHVRRSKIPGRLSTALCHHTKAVNSINWSPT--HAHLLASAGMDQSICIWNVWSRDQKLA 183
           S  R + +P ++   L  H   VNSI W P    +H+L SA MD++  +WN       L 
Sbjct: 218 SQYRETTVPKKVLFHLRGHRGPVNSIQWCPVFCKSHMLLSASMDKTFKVWNAVDSGHCL- 276

Query: 184 RVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPEN 243
           +  + HS AV   +WS  G  +LS G+D +  L D+E G +  S + +  V  +KFHP++
Sbjct: 277 QTYSVHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQVFSGQSDFRVTTLKFHPKD 336

Query: 244 SNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSEN 303
            N+FL GG    ++ WD+RTGKV   Y  ++   LD+ F   G +F+SS+D S  + ++ 
Sbjct: 337 HNVFLCGGFSSEIKAWDMRTGKVVKGYKATIQQTLDILFLQEGSEFLSSTDASTRDSADR 396

Query: 304 SIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFK 363
           +I+ WD      +S Q++ E YTCP +  HP +P F+AQ+NGNY+A+FSS  P+R+ + +
Sbjct: 397 TIIAWDFRTAAKISNQIFHERYTCPSLALHPREPVFLAQTNGNYLALFSSVWPYRMSRRR 456

Query: 364 RYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHP 423
           RYE H V G+ + C  S  G+ LV+GS+DG +  ++ R++     ++ + QAC+   +HP
Sbjct: 457 RYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLMFSFRTASRACTLQGHTQACLGTTYHP 516

Query: 424 ILPNIIGSCSWNGDVSVY 441
           +LP+++G+CSW GD+ ++
Sbjct: 517 VLPSVLGTCSWGGDIKIW 534

Mus musculus (taxid: 10090)
>sp|Q64LD2|WDR25_HUMAN WD repeat-containing protein 25 OS=Homo sapiens GN=WDR25 PE=2 SV=3 Back     alignment and function description
>sp|Q9DC48|PRP17_MOUSE Pre-mRNA-processing factor 17 OS=Mus musculus GN=Cdc40 PE=1 SV=1 Back     alignment and function description
>sp|O60508|PRP17_HUMAN Pre-mRNA-processing factor 17 OS=Homo sapiens GN=CDC40 PE=1 SV=1 Back     alignment and function description
>sp|O43071|PRP17_SCHPO Pre-mRNA-processing factor 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp17 PE=1 SV=1 Back     alignment and function description
>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 Back     alignment and function description
>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1 Back     alignment and function description
>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1 Back     alignment and function description
>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1 Back     alignment and function description
>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
225461205418 PREDICTED: WD repeat-containing protein 0.938 0.992 0.662 1e-166
302143169506 unnamed protein product [Vitis vinifera] 0.938 0.820 0.662 1e-166
224124156408 predicted protein [Populus trichocarpa] 0.909 0.985 0.649 1e-156
356545205417 PREDICTED: LOW QUALITY PROTEIN: WD repea 0.938 0.995 0.614 1e-151
42568531457 transducin/WD40 domain-containing protei 0.986 0.954 0.555 1e-147
297796327455 WD-40 repeat family protein [Arabidopsis 0.986 0.958 0.550 1e-144
356575793359 PREDICTED: WD repeat-containing protein 0.798 0.983 0.685 1e-144
357162116443 PREDICTED: WD repeat-containing protein 0.990 0.988 0.550 1e-136
147866577297 hypothetical protein VITISV_013363 [Viti 0.644 0.959 0.792 1e-135
356514927350 PREDICTED: LOW QUALITY PROTEIN: WD repea 0.757 0.957 0.652 1e-129
>gi|225461205|ref|XP_002280346.1| PREDICTED: WD repeat-containing protein 25-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 295/445 (66%), Positives = 343/445 (77%), Gaps = 30/445 (6%)

Query: 1   MDLLCNAYSNTSDD---EPEPASKHEPELRSIFSPPSKRPRPDYPYPQTKPHPLHRPNQQ 57
           MDLLCNAYS  SDD   EP P ++  P       PP KR                +P   
Sbjct: 1   MDLLCNAYSTPSDDDDDEPRPVAEPTP-------PPLKR---------------FKPQNP 38

Query: 58  HSGLRTEASVAGRYMSKRERALLGPGIPAATDPKPDPSAVVAAAQVLGSISDAYLRQDIL 117
               +    +AGRY+SKRER+LL P   A + P P+P+A  +A+ V+GSISD+ L +DIL
Sbjct: 39  PLLPKPYPLIAGRYISKRERSLLSP---ALSPPLPNPAA--SASPVMGSISDSDLPRDIL 93

Query: 118 SLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWS 177
           S LRH  K   +  +I  RLS  L  H K+VN+I WSPTHAHLLASAGMD +ICIWN WS
Sbjct: 94  SSLRHQAKGRSQLGRISERLSVDLKSHKKSVNTIQWSPTHAHLLASAGMDHAICIWNAWS 153

Query: 178 RDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFREELAVRVV 237
           RDQK AR  ++H+AAV DVKW QQGL VLSCGYDCSSRL+DVEKG++TQ F E+  V V+
Sbjct: 154 RDQKKAREFSYHNAAVKDVKWLQQGLSVLSCGYDCSSRLIDVEKGLQTQIFTEDQVVGVI 213

Query: 238 KFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSG 297
           K HP+NSNLFLSGGSKG LRLWDIRTGKV HEYI+ LGPILD+EFT+N KQF+SSSDVSG
Sbjct: 214 KLHPDNSNLFLSGGSKGRLRLWDIRTGKVVHEYIRGLGPILDIEFTVNAKQFISSSDVSG 273

Query: 298 SNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPF 357
           SNMSENSIVVWDVSR+VPLS QVYVEAYTCPC+R HP DP+F+AQSNGNYIAIFSS PPF
Sbjct: 274 SNMSENSIVVWDVSRQVPLSNQVYVEAYTCPCIRCHPSDPFFIAQSNGNYIAIFSSCPPF 333

Query: 358 RLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACI 417
           +LDK+KRYE+HGVSGFPIKC+FSLDGEKL SGSSDG IY Y+ RSSEL +KIKAYEQACI
Sbjct: 334 KLDKYKRYENHGVSGFPIKCNFSLDGEKLASGSSDGCIYLYDYRSSELVQKIKAYEQACI 393

Query: 418 DVAFHPILPNIIGSCSWNGDVSVYE 442
           DVAFHP+LPN+I +C W+G VSV+E
Sbjct: 394 DVAFHPLLPNVIAACGWDGAVSVFE 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302143169|emb|CBI20464.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224124156|ref|XP_002319259.1| predicted protein [Populus trichocarpa] gi|222857635|gb|EEE95182.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356545205|ref|XP_003541035.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 25-like [Glycine max] Back     alignment and taxonomy information
>gi|42568531|ref|NP_200263.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332009122|gb|AED96505.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297796327|ref|XP_002866048.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297311883|gb|EFH42307.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356575793|ref|XP_003556021.1| PREDICTED: WD repeat-containing protein 25-like [Glycine max] Back     alignment and taxonomy information
>gi|357162116|ref|XP_003579310.1| PREDICTED: WD repeat-containing protein 25-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|147866577|emb|CAN83694.1| hypothetical protein VITISV_013363 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356514927|ref|XP_003526153.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 25-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2172084457 AT5G54520 "AT5G54520" [Arabido 0.986 0.954 0.542 2.6e-134
MGI|MGI:3045255535 Wdr25 "WD repeat domain 25" [M 0.821 0.678 0.343 1.6e-61
DICTYBASE|DDB_G0289501595 cdc40 "putative RNA splicing f 0.683 0.507 0.326 9.1e-45
FB|FBgn0038927576 CG6015 [Drosophila melanogaste 0.658 0.505 0.295 4.1e-41
TAIR|locus:2194589573 AT1G10580 "AT1G10580" [Arabido 0.683 0.527 0.314 5.3e-40
ZFIN|ZDB-GENE-050116-3578 cdc40 "cell division cycle 40 0.737 0.564 0.299 2.7e-38
UNIPROTKB|F1NQ45580 CDC40 "Uncharacterized protein 0.771 0.587 0.270 7.6e-35
RGD|1307063444 Cdc40 "cell division cycle 40" 0.653 0.650 0.290 2.8e-34
UNIPROTKB|F1LMQ0447 Cdc40 "Protein Cdc40" [Rattus 0.653 0.646 0.290 2.8e-34
UNIPROTKB|F1MBS9579 CDC40 "Uncharacterized protein 0.653 0.499 0.290 6.2e-34
TAIR|locus:2172084 AT5G54520 "AT5G54520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
 Identities = 251/463 (54%), Positives = 329/463 (71%)

Query:     1 MDLLCNAYSNTSDDEPEPASKHEPELRSIFSP--PSKRPRPDYPYPQTKPH-PLHRPNQQ 57
             MDL+CN+Y+N SDDEPEP +      +   +P  PSKRP   YP P+ + + P  RP   
Sbjct:     1 MDLICNSYANDSDDEPEPVTNERLTSKIAAAPSIPSKRP---YPVPEERQYKPPRRPYPP 57

Query:    58 H---SGLRTEAS----------VAGRYMSKRERALLGPGIPAATDPKPDPSAVVA----- 99
             H   S  +T +S          V GRY+SKRER+LL      +T P PD S+ ++     
Sbjct:    58 HGSYSESQTSSSFSIPVPVPVPVPGRYVSKRERSLLAS---LSTIPTPDQSSDLSQKPYS 114

Query:   100 AAQVLGSISDAYLRQDILSLLRHLPKSHVRRSKIPGRLSTALCHHTKAVNSINWSPTHAH 159
             +  VLGSISD+ + + +LS +RH PK    ++++P R+S +L  HTKAV +I+WS +H H
Sbjct:   115 SPTVLGSISDSDVPRHVLSSVRHRPKGSSLQTEMPSRMSISLTGHTKAVTAIDWSTSHVH 174

Query:   160 LLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGYDCSSRLVDV 219
             LLASAG+D ++ +WNVWS D+K  R    H+A V DVKWS+QGL +LSCGYDC+SRL DV
Sbjct:   175 LLASAGLDGAVYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGLSLLSCGYDCTSRLFDV 234

Query:   220 EKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILD 279
             E+G+ETQSF+E+  V VVKFHP+N N+FLSGGSKG LRLWDIR  K  HEY++ LGPILD
Sbjct:   235 ERGVETQSFKEDEVVGVVKFHPDNCNVFLSGGSKGSLRLWDIRANKFVHEYVRDLGPILD 294

Query:   280 VEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYF 339
             VEF   GKQF               ++VWD+SREVPLS QVYVEAYTCPC++ HP DP F
Sbjct:   295 VEFIAGGKQFISSSDVSGRNISENAVIVWDISREVPLSNQVYVEAYTCPCIKRHPQDPVF 354

Query:   340 VAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYN 399
             +AQS+GNY AIFS+ PPF+L+K+KR+E H V+GFPIKC+FS DGE L SGSSDGS+Y Y+
Sbjct:   355 IAQSHGNYTAIFSTNPPFKLNKYKRFEGHWVAGFPIKCNFSPDGETLASGSSDGSVYMYD 414

Query:   400 CRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE 442
              +S+ L +K+KAYEQ C++V++HP+LPN++ +CSWNG VSV+E
Sbjct:   415 YKSTALIKKLKAYEQPCVNVSYHPVLPNVVAACSWNGQVSVFE 457
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0005834 "heterotrimeric G-protein complex" evidence=ISS
GO:0008150 "biological_process" evidence=ND
GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS
GO:0048573 "photoperiodism, flowering" evidence=RCA
MGI|MGI:3045255 Wdr25 "WD repeat domain 25" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289501 cdc40 "putative RNA splicing factor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0038927 CG6015 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2194589 AT1G10580 "AT1G10580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050116-3 cdc40 "cell division cycle 40 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQ45 CDC40 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1307063 Cdc40 "cell division cycle 40" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMQ0 Cdc40 "Protein Cdc40" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBS9 CDC40 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 2e-31
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 2e-23
COG2319 466 COG2319, COG2319, FOG: WD40 repeat [General functi 2e-23
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 3e-23
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 6e-21
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 4e-19
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 6e-06
smart0032040 smart00320, WD40, WD40 repeats 1e-05
smart0032040 smart00320, WD40, WD40 repeats 6e-04
PTZ00421493 PTZ00421, PTZ00421, coronin; Provisional 6e-04
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 0.001
PTZ00420 568 PTZ00420, PTZ00420, coronin; Provisional 0.001
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information 
 Score =  121 bits (306), Expect = 2e-31
 Identities = 73/311 (23%), Positives = 122/311 (39%), Gaps = 63/311 (20%)

Query: 134 PGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAV 193
            G L   L  HT  V  +  S      LAS   D++I +W++     +  R L  H++ V
Sbjct: 40  TGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDL--ETGECVRTLTGHTSYV 96

Query: 194 NDVKWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFRE-ELAVRVVKFHPENSNLFLSGGS 252
           + V +S  G  + S   D + ++ DVE G    + R     V  V F P     F++  S
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP--DGTFVASSS 154

Query: 253 K-GLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFVSSSDVSGSNMSENSIVVWDVS 311
           + G ++LWD+RTGK         G +  V F+ +G++ +SSS       S+ +I +WD+S
Sbjct: 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-------SDGTIKLWDLS 207

Query: 312 REVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVS 371
               L                                                   H   
Sbjct: 208 TGKCL----------------------------------------------GTLRGH--E 219

Query: 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGS 431
                 +FS DG  L SGS DG+I  ++ R+ E  + +  +  +   +A+ P     + S
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLAS 278

Query: 432 CSWNGDVSVYE 442
            S +G + +++
Sbjct: 279 GSADGTIRIWD 289

Length = 289
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
KOG0282503 consensus mRNA splicing factor [Function unknown] 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
KOG0286343 consensus G-protein beta subunit [General function 100.0
KOG0293519 consensus WD40 repeat-containing protein [Function 100.0
KOG0279315 consensus G protein beta subunit-like protein [Sig 100.0
KOG0265338 consensus U5 snRNP-specific protein-like factor an 100.0
KOG0315311 consensus G-protein beta subunit-like protein (con 100.0
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
KOG0315311 consensus G-protein beta subunit-like protein (con 100.0
KOG0295406 consensus WD40 repeat-containing protein [Function 100.0
KOG0284464 consensus Polyadenylation factor I complex, subuni 100.0
KOG0316307 consensus Conserved WD40 repeat-containing protein 100.0
KOG0296399 consensus Angio-associated migratory cell protein 100.0
KOG0266456 consensus WD40 repeat-containing protein [General 100.0
KOG0645312 consensus WD40 repeat protein [General function pr 100.0
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 100.0
KOG0263707 consensus Transcription initiation factor TFIID, s 100.0
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 100.0
KOG0279315 consensus G protein beta subunit-like protein [Sig 100.0
KOG0318603 consensus WD40 repeat stress protein/actin interac 100.0
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 100.0
KOG0275508 consensus Conserved WD40 repeat-containing protein 100.0
KOG0643327 consensus Translation initiation factor 3, subunit 100.0
KOG0278334 consensus Serine/threonine kinase receptor-associa 100.0
PLN00181793 protein SPA1-RELATED; Provisional 100.0
KOG0286343 consensus G-protein beta subunit [General function 100.0
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 100.0
KOG1407313 consensus WD40 repeat protein [Function unknown] 100.0
KOG0263707 consensus Transcription initiation factor TFIID, s 100.0
KOG0319 775 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0288459 consensus WD40 repeat protein TipD [General functi 100.0
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 100.0
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 100.0
KOG0281499 consensus Beta-TrCP (transducin repeats containing 100.0
KOG0313423 consensus Microtubule binding protein YTM1 (contai 100.0
KOG0319 775 consensus WD40-repeat-containing subunit of the 18 100.0
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 100.0
KOG0284464 consensus Polyadenylation factor I complex, subuni 100.0
KOG0283712 consensus WD40 repeat-containing protein [Function 100.0
KOG0640430 consensus mRNA cleavage stimulating factor complex 100.0
KOG0318 603 consensus WD40 repeat stress protein/actin interac 100.0
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0266456 consensus WD40 repeat-containing protein [General 100.0
KOG0295406 consensus WD40 repeat-containing protein [Function 100.0
KOG0772 641 consensus Uncharacterized conserved protein, conta 100.0
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 100.0
KOG0268433 consensus Sof1-like rRNA processing protein (conta 100.0
KOG0645312 consensus WD40 repeat protein [General function pr 100.0
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 100.0
KOG0316307 consensus Conserved WD40 repeat-containing protein 100.0
KOG0647347 consensus mRNA export protein (contains WD40 repea 100.0
KOG0306 888 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0276 794 consensus Vesicle coat complex COPI, beta' subunit 100.0
PTZ00421 493 coronin; Provisional 100.0
KOG0639705 consensus Transducin-like enhancer of split protei 100.0
KOG0973 942 consensus Histone transcription regulator HIRA, WD 100.0
KOG0310 487 consensus Conserved WD40 repeat-containing protein 100.0
PLN00181793 protein SPA1-RELATED; Provisional 100.0
KOG0294362 consensus WD40 repeat-containing protein [Function 100.0
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 100.0
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 100.0
KOG0282503 consensus mRNA splicing factor [Function unknown] 100.0
KOG0265338 consensus U5 snRNP-specific protein-like factor an 100.0
KOG0281499 consensus Beta-TrCP (transducin repeats containing 100.0
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 100.0
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 100.0
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 100.0
KOG0289506 consensus mRNA splicing factor [General function p 100.0
KOG0641350 consensus WD40 repeat protein [General function pr 100.0
KOG0289506 consensus mRNA splicing factor [General function p 100.0
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.98
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.98
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.98
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.98
KOG1273405 consensus WD40 repeat protein [General function pr 99.98
PTZ00421 493 coronin; Provisional 99.98
PTZ00420 568 coronin; Provisional 99.98
KOG0310 487 consensus Conserved WD40 repeat-containing protein 99.98
KOG0296399 consensus Angio-associated migratory cell protein 99.97
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.97
KOG0283 712 consensus WD40 repeat-containing protein [Function 99.97
PTZ00420 568 coronin; Provisional 99.97
KOG4283397 consensus Transcription-coupled repair protein CSA 99.97
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.97
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.97
KOG2096420 consensus WD40 repeat protein [General function pr 99.97
KOG0308 735 consensus Conserved WD40 repeat-containing protein 99.97
KOG0300481 consensus WD40 repeat-containing protein [Function 99.97
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.97
KOG2055514 consensus WD40 repeat protein [General function pr 99.97
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.97
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.97
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.97
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.97
KOG0293519 consensus WD40 repeat-containing protein [Function 99.97
KOG0301 745 consensus Phospholipase A2-activating protein (con 99.97
KOG0973 942 consensus Histone transcription regulator HIRA, WD 99.97
KOG1274 933 consensus WD40 repeat protein [General function pr 99.97
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 99.97
KOG0643327 consensus Translation initiation factor 3, subunit 99.96
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.96
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.96
KOG0269 839 consensus WD40 repeat-containing protein [Function 99.96
KOG0321 720 consensus WD40 repeat-containing protein L2DTL [Fu 99.96
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.96
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.96
KOG4328498 consensus WD40 protein [Function unknown] 99.96
KOG0772 641 consensus Uncharacterized conserved protein, conta 99.96
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.96
KOG0308 735 consensus Conserved WD40 repeat-containing protein 99.96
KOG1539 910 consensus WD repeat protein [General function pred 99.96
KOG0641350 consensus WD40 repeat protein [General function pr 99.96
KOG1539 910 consensus WD repeat protein [General function pred 99.96
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.96
KOG0646 476 consensus WD40 repeat protein [General function pr 99.95
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.95
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.95
KOG0300481 consensus WD40 repeat-containing protein [Function 99.95
KOG0269 839 consensus WD40 repeat-containing protein [Function 99.95
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.95
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.95
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.95
KOG0267 825 consensus Microtubule severing protein katanin p80 99.95
KOG0646 476 consensus WD40 repeat protein [General function pr 99.94
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.94
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 99.94
KOG2106626 consensus Uncharacterized conserved protein, conta 99.94
KOG2106 626 consensus Uncharacterized conserved protein, conta 99.94
KOG2048 691 consensus WD40 repeat protein [General function pr 99.94
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.94
KOG0639705 consensus Transducin-like enhancer of split protei 99.93
KOG0302440 consensus Ribosome Assembly protein [General funct 99.93
KOG1063 764 consensus RNA polymerase II elongator complex, sub 99.93
KOG1274 933 consensus WD40 repeat protein [General function pr 99.93
KOG0301 745 consensus Phospholipase A2-activating protein (con 99.93
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.93
KOG4227 609 consensus WD40 repeat protein [General function pr 99.93
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.93
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.92
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 99.92
KOG2055514 consensus WD40 repeat protein [General function pr 99.92
KOG1334559 consensus WD40 repeat protein [General function pr 99.92
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.92
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.92
KOG1445 1012 consensus Tumor-specific antigen (contains WD repe 99.92
KOG2048 691 consensus WD40 repeat protein [General function pr 99.92
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.92
KOG0267 825 consensus Microtubule severing protein katanin p80 99.91
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 99.91
KOG0294362 consensus WD40 repeat-containing protein [Function 99.91
KOG0270463 consensus WD40 repeat-containing protein [Function 99.91
KOG2096420 consensus WD40 repeat protein [General function pr 99.91
KOG0303472 consensus Actin-binding protein Coronin, contains 99.91
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.91
KOG0302440 consensus Ribosome Assembly protein [General funct 99.9
KOG0321 720 consensus WD40 repeat-containing protein L2DTL [Fu 99.9
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.9
KOG4328498 consensus WD40 protein [Function unknown] 99.9
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.9
KOG0270463 consensus WD40 repeat-containing protein [Function 99.9
KOG1188376 consensus WD40 repeat protein [General function pr 99.9
KOG1310 758 consensus WD40 repeat protein [General function pr 99.89
PRK11028330 6-phosphogluconolactonase; Provisional 99.89
KOG1273 405 consensus WD40 repeat protein [General function pr 99.89
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.89
KOG4283397 consensus Transcription-coupled repair protein CSA 99.89
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.89
COG2319 466 FOG: WD40 repeat [General function prediction only 99.89
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.89
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.88
KOG1188376 consensus WD40 repeat protein [General function pr 99.88
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.88
KOG1963 792 consensus WD40 repeat protein [General function pr 99.87
KOG0649325 consensus WD40 repeat protein [General function pr 99.87
COG2319466 FOG: WD40 repeat [General function prediction only 99.86
KOG0303 472 consensus Actin-binding protein Coronin, contains 99.86
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.86
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.85
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.85
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.85
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.84
KOG1963 792 consensus WD40 repeat protein [General function pr 99.84
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.84
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.84
PRK01742429 tolB translocation protein TolB; Provisional 99.84
KOG0771398 consensus Prolactin regulatory element-binding pro 99.84
KOG1445 1012 consensus Tumor-specific antigen (contains WD repe 99.83
KOG2394 636 consensus WD40 protein DMR-N9 [General function pr 99.83
PRK11028330 6-phosphogluconolactonase; Provisional 99.83
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.83
KOG2110 391 consensus Uncharacterized conserved protein, conta 99.82
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.82
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.81
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 99.8
KOG1524 737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.8
KOG2110 391 consensus Uncharacterized conserved protein, conta 99.79
KOG0771398 consensus Prolactin regulatory element-binding pro 99.79
KOG1524 737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.79
PRK03629429 tolB translocation protein TolB; Provisional 99.78
KOG1272 545 consensus WD40-repeat-containing subunit of the 18 99.78
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.78
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.78
PRK01742429 tolB translocation protein TolB; Provisional 99.78
KOG4227 609 consensus WD40 repeat protein [General function pr 99.78
KOG0649325 consensus WD40 repeat protein [General function pr 99.77
PRK02889427 tolB translocation protein TolB; Provisional 99.76
KOG2139445 consensus WD40 repeat protein [General function pr 99.76
KOG2111346 consensus Uncharacterized conserved protein, conta 99.76
KOG4497 447 consensus Uncharacterized conserved protein WDR8, 99.76
PRK04922433 tolB translocation protein TolB; Provisional 99.76
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.75
KOG1310 758 consensus WD40 repeat protein [General function pr 99.75
KOG3881412 consensus Uncharacterized conserved protein [Funct 99.75
KOG2111346 consensus Uncharacterized conserved protein, conta 99.75
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.74
KOG2139445 consensus WD40 repeat protein [General function pr 99.74
PRK05137435 tolB translocation protein TolB; Provisional 99.74
KOG2321 703 consensus WD40 repeat protein [General function pr 99.72
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 99.7
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 99.7
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.7
PRK03629429 tolB translocation protein TolB; Provisional 99.69
PRK04922433 tolB translocation protein TolB; Provisional 99.69
KOG1272545 consensus WD40-repeat-containing subunit of the 18 99.68
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 99.68
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.67
PRK05137435 tolB translocation protein TolB; Provisional 99.65
PRK04792448 tolB translocation protein TolB; Provisional 99.65
KOG2315 566 consensus Predicted translation initiation factor 99.64
PRK02889427 tolB translocation protein TolB; Provisional 99.64
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.64
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.64
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 99.63
PRK00178430 tolB translocation protein TolB; Provisional 99.62
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 99.62
KOG1334 559 consensus WD40 repeat protein [General function pr 99.62
KOG3881412 consensus Uncharacterized conserved protein [Funct 99.61
KOG1409404 consensus Uncharacterized conserved protein, conta 99.61
KOG2041 1189 consensus WD40 repeat protein [General function pr 99.6
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 99.58
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.58
KOG2314 698 consensus Translation initiation factor 3, subunit 99.55
PRK01029428 tolB translocation protein TolB; Provisional 99.55
PRK00178430 tolB translocation protein TolB; Provisional 99.54
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 99.53
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 99.53
PRK04792448 tolB translocation protein TolB; Provisional 99.52
KOG41901034 consensus Uncharacterized conserved protein [Funct 99.51
KOG0280339 consensus Uncharacterized conserved protein [Amino 99.51
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 99.5
KOG1409 404 consensus Uncharacterized conserved protein, conta 99.5
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 99.5
KOG4547 541 consensus WD40 repeat-containing protein [General 99.49
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 99.48
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 99.48
KOG4547 541 consensus WD40 repeat-containing protein [General 99.47
PRK01029428 tolB translocation protein TolB; Provisional 99.46
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 99.46
KOG4532344 consensus WD40-like repeat containing protein [Gen 99.46
COG5354 561 Uncharacterized protein, contains Trp-Asp (WD) rep 99.43
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 99.43
KOG2321 703 consensus WD40 repeat protein [General function pr 99.43
COG5354 561 Uncharacterized protein, contains Trp-Asp (WD) rep 99.42
KOG2315 566 consensus Predicted translation initiation factor 99.42
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.41
KOG0280339 consensus Uncharacterized conserved protein [Amino 99.4
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 99.39
PF04762 928 IKI3: IKI3 family; InterPro: IPR006849 Members of 99.38
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.38
PRK04043419 tolB translocation protein TolB; Provisional 99.37
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 99.37
KOG1912 1062 consensus WD40 repeat protein [General function pr 99.34
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 99.34
COG4946668 Uncharacterized protein related to the periplasmic 99.33
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 99.32
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 99.31
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 99.31
PF04762 928 IKI3: IKI3 family; InterPro: IPR006849 Members of 99.31
COG4946668 Uncharacterized protein related to the periplasmic 99.28
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 99.28
KOG2041 1189 consensus WD40 repeat protein [General function pr 99.27
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 99.24
PRK04043419 tolB translocation protein TolB; Provisional 99.21
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 99.21
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 99.21
KOG1912 1062 consensus WD40 repeat protein [General function pr 99.2
KOG41901034 consensus Uncharacterized conserved protein [Funct 99.2
KOG4714319 consensus Nucleoporin [Nuclear structure] 99.15
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 99.15
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 99.13
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 99.12
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 99.09
KOG2314 698 consensus Translation initiation factor 3, subunit 99.08
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 99.07
KOG4714319 consensus Nucleoporin [Nuclear structure] 99.07
KOG4532344 consensus WD40-like repeat containing protein [Gen 99.06
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 99.05
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 99.05
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 99.05
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 99.04
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 99.04
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 99.03
KOG3914 390 consensus WD repeat protein WDR4 [Function unknown 99.0
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 99.0
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 98.97
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.95
KOG2695425 consensus WD40 repeat protein [General function pr 98.93
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 98.93
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 98.92
KOG2695425 consensus WD40 repeat protein [General function pr 98.92
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.89
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 98.88
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 98.86
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 98.85
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 98.78
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 98.77
KOG1008 783 consensus Uncharacterized conserved protein, conta 98.7
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 98.69
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 98.67
PRK02888 635 nitrous-oxide reductase; Validated 98.67
KOG3621 726 consensus WD40 repeat-containing protein [General 98.66
COG0823425 TolB Periplasmic component of the Tol biopolymer t 98.66
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 98.65
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 98.64
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 98.63
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 98.63
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 98.61
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 98.61
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.59
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 98.58
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 98.57
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 98.57
PF04053 443 Coatomer_WDAD: Coatomer WD associated region ; Int 98.56
COG3391381 Uncharacterized conserved protein [Function unknow 98.55
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 98.53
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 98.5
PRK02888 635 nitrous-oxide reductase; Validated 98.5
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 98.47
KOG4649 354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 98.45
COG3391381 Uncharacterized conserved protein [Function unknow 98.45
COG0823425 TolB Periplasmic component of the Tol biopolymer t 98.44
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.43
COG3386307 Gluconolactonase [Carbohydrate transport and metab 98.42
PF04841 410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 98.4
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 98.35
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 98.35
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 98.34
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 98.31
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 98.29
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 98.29
PF04053 443 Coatomer_WDAD: Coatomer WD associated region ; Int 98.26
COG3490366 Uncharacterized protein conserved in bacteria [Fun 98.25
KOG1008 783 consensus Uncharacterized conserved protein, conta 98.23
KOG3621 726 consensus WD40 repeat-containing protein [General 98.18
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 98.17
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 98.15
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 98.12
PF08553 794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 98.12
PF08596 395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 98.12
PF14727418 PHTB1_N: PTHB1 N-terminus 98.04
KOG4640 665 consensus Anaphase-promoting complex (APC), subuni 98.01
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 97.98
KOG1897 1096 consensus Damage-specific DNA binding complex, sub 97.96
KOG2444238 consensus WD40 repeat protein [General function pr 97.94
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 97.94
KOG1897 1096 consensus Damage-specific DNA binding complex, sub 97.89
smart0032040 WD40 WD40 repeats. Note that these repeats are per 97.88
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 97.87
COG3386307 Gluconolactonase [Carbohydrate transport and metab 97.85
smart0032040 WD40 WD40 repeats. Note that these repeats are per 97.84
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 97.8
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 97.8
PRK13616591 lipoprotein LpqB; Provisional 97.79
KOG4640 665 consensus Anaphase-promoting complex (APC), subuni 97.79
COG3204316 Uncharacterized protein conserved in bacteria [Fun 97.76
KOG2395 644 consensus Protein involved in vacuole import and d 97.76
PF14655 415 RAB3GAP2_N: Rab3 GTPase-activating protein regulat 97.71
COG5276370 Uncharacterized conserved protein [Function unknow 97.7
PRK10115 686 protease 2; Provisional 97.67
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 97.67
PRK13616591 lipoprotein LpqB; Provisional 97.67
COG3490366 Uncharacterized protein conserved in bacteria [Fun 97.65
PF05694461 SBP56: 56kDa selenium binding protein (SBP56); Int 97.65
PHA02713557 hypothetical protein; Provisional 97.61
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 97.61
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 97.55
TIGR03118336 PEPCTERM_chp_1 conserved hypothetical protein TIGR 97.5
COG3823262 Glutamine cyclotransferase [Posttranslational modi 97.49
KOG2395644 consensus Protein involved in vacuole import and d 97.48
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 97.47
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 97.41
KOG4499310 consensus Ca2+-binding protein Regucalcin/SMP30 [I 97.38
PHA02713557 hypothetical protein; Provisional 97.35
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 97.28
COG3204316 Uncharacterized protein conserved in bacteria [Fun 97.28
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 97.25
KOG2444238 consensus WD40 repeat protein [General function pr 97.23
PF05694461 SBP56: 56kDa selenium binding protein (SBP56); Int 97.18
PF15390 671 DUF4613: Domain of unknown function (DUF4613) 97.12
PRK13684334 Ycf48-like protein; Provisional 97.11
PHA03098534 kelch-like protein; Provisional 97.09
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 96.96
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 96.95
PF07995331 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: 96.88
PF15390 671 DUF4613: Domain of unknown function (DUF4613) 96.79
KOG3630 1405 consensus Nuclear pore complex, Nup214/CAN compone 96.76
TIGR02604367 Piru_Ver_Nterm putative membrane-bound dehydrogena 96.75
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 96.7
PF03022287 MRJP: Major royal jelly protein; InterPro: IPR0035 96.69
PF10214 765 Rrn6: RNA polymerase I-specific transcription-init 96.66
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 96.62
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 96.59
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 96.54
COG1520370 FOG: WD40-like repeat [Function unknown] 96.46
PF14781136 BBS2_N: Ciliary BBSome complex subunit 2, N-termin 96.44
KOG2280 829 consensus Vacuolar assembly/sorting protein VPS16 96.33
PHA03098534 kelch-like protein; Provisional 96.28
PRK13684334 Ycf48-like protein; Provisional 96.28
PF12234 631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 96.2
PHA02790480 Kelch-like protein; Provisional 96.19
COG5276370 Uncharacterized conserved protein [Function unknow 96.1
TIGR02604 367 Piru_Ver_Nterm putative membrane-bound dehydrogena 96.05
COG5167 776 VID27 Protein involved in vacuole import and degra 96.03
PF12234 631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 96.03
KOG2247 615 consensus WD40 repeat-containing protein [General 96.0
KOG2280 829 consensus Vacuolar assembly/sorting protein VPS16 95.97
PLN00033398 photosystem II stability/assembly factor; Provisio 95.93
PRK10115 686 protease 2; Provisional 95.91
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 95.91
PF08728 717 CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans 95.85
PF14781136 BBS2_N: Ciliary BBSome complex subunit 2, N-termin 95.81
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 95.77
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 95.75
KOG3630 1405 consensus Nuclear pore complex, Nup214/CAN compone 95.64
PF10168 717 Nup88: Nuclear pore component; InterPro: IPR019321 95.6
PF1031343 DUF2415: Uncharacterised protein domain (DUF2415); 95.54
COG4590 733 ABC-type uncharacterized transport system, permeas 95.43
PLN02153341 epithiospecifier protein 95.41
PF10168 717 Nup88: Nuclear pore component; InterPro: IPR019321 95.36
KOG2247 615 consensus WD40 repeat-containing protein [General 95.33
PF14655415 RAB3GAP2_N: Rab3 GTPase-activating protein regulat 95.16
PF08728 717 CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans 95.0
smart00036302 CNH Domain found in NIK1-like kinases, mouse citro 94.98
KOG4499310 consensus Ca2+-binding protein Regucalcin/SMP30 [I 94.84
PF1031343 DUF2415: Uncharacterised protein domain (DUF2415); 94.79
KOG1916 1283 consensus Nuclear protein, contains WD40 repeats [ 94.78
KOG3616 1636 consensus Selective LIM binding factor [Transcript 94.71
smart00036302 CNH Domain found in NIK1-like kinases, mouse citro 94.66
PHA02790480 Kelch-like protein; Provisional 94.44
TIGR03606 454 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH 94.43
PF02333381 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 94.43
PLN00033398 photosystem II stability/assembly factor; Provisio 94.41
PF07569 219 Hira: TUP1-like enhancer of split; InterPro: IPR01 94.38
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 94.36
KOG2063 877 consensus Vacuolar assembly/sorting proteins VPS39 94.34
KOG2377 657 consensus Uncharacterized conserved protein [Funct 94.19
PF05935477 Arylsulfotrans: Arylsulfotransferase (ASST); Inter 94.17
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 94.03
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 94.02
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 93.85
COG4590 733 ABC-type uncharacterized transport system, permeas 93.82
COG5167776 VID27 Protein involved in vacuole import and degra 93.76
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 93.7
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 93.65
KOG4659 1899 consensus Uncharacterized conserved protein (Rhs f 93.4
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 93.39
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 93.33
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 93.27
PLN02193470 nitrile-specifier protein 92.98
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 92.95
KOG1898 1205 consensus Splicing factor 3b, subunit 3 [RNA proce 92.82
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 92.73
PLN02153341 epithiospecifier protein 92.68
PF11635 753 Med16: Mediator complex subunit 16; InterPro: IPR0 92.66
COG3823262 Glutamine cyclotransferase [Posttranslational modi 92.56
COG3292 671 Predicted periplasmic ligand-binding sensor domain 92.51
TIGR0227642 beta_rpt_yvtn 40-residue YVTN family beta-propelle 92.41
PF13449326 Phytase-like: Esterase-like activity of phytase 92.35
KOG2377 657 consensus Uncharacterized conserved protein [Funct 92.07
PF14727 418 PHTB1_N: PTHB1 N-terminus 92.0
PF11715547 Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 91.86
PF10214 765 Rrn6: RNA polymerase I-specific transcription-init 91.67
PF12768281 Rax2: Cortical protein marker for cell polarity 91.64
KOG1983 993 consensus Tomosyn and related SNARE-interacting pr 91.39
TIGR03118336 PEPCTERM_chp_1 conserved hypothetical protein TIGR 90.86
TIGR03032335 conserved hypothetical protein TIGR03032. This pro 90.85
KOG1916 1283 consensus Nuclear protein, contains WD40 repeats [ 90.73
TIGR0227642 beta_rpt_yvtn 40-residue YVTN family beta-propelle 90.28
PF08801 422 Nucleoporin_N: Nup133 N terminal like; InterPro: I 89.9
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 89.9
PLN02193470 nitrile-specifier protein 89.66
KOG4460 741 consensus Nuclear pore complex, Nup88/rNup84 compo 89.52
PF12657173 TFIIIC_delta: Transcription factor IIIC subunit de 89.32
PF14269299 Arylsulfotran_2: Arylsulfotransferase (ASST) 89.29
PF0767639 PD40: WD40-like Beta Propeller Repeat; InterPro: I 89.2
PF10395 670 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an 89.17
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-53  Score=363.69  Aligned_cols=307  Identities=42%  Similarity=0.782  Sum_probs=296.2

Q ss_pred             ccccccCCcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEE
Q 013475          128 VRRSKIPGRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLS  207 (442)
Q Consensus       128 ~~~~~~~~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  207 (442)
                      ..++.+|.++++++.||+..|+++.|.|-.+.+|++++.|+.|+||++.. ...+++++.+|..+|.+++|+.+|..|++
T Consensus       197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS  275 (503)
T KOG0282|consen  197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLS  275 (503)
T ss_pred             cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeee
Confidence            34677799999999999999999999995599999999999999999977 47899999999999999999999999999


Q ss_pred             EecCCcEEEEECCCCcEEEeeeCCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCC
Q 013475          208 CGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGK  287 (442)
Q Consensus       208 ~~~d~~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (442)
                      ++.|+.|++||+++|+++..|.....++|+.|+|++.+.|++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|+
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR  355 (503)
T ss_pred             eecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence            99999999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEee
Q 013475          288 QFVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYES  367 (442)
Q Consensus       288 ~l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~  367 (442)
                      +++++++       |+.++||+.+.+..+..+...+...+.++..+|+++++++-+.|+.|.+|......++...+.+++
T Consensus       356 rFissSD-------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG  428 (503)
T KOG0282|consen  356 RFISSSD-------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG  428 (503)
T ss_pred             eEeeecc-------CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence            9999999       999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             cccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475          368 HGVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE  442 (442)
Q Consensus       368 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  442 (442)
                      |...++.+.+.|||||++|++|+.||.+.+||.++-+++..+++|.+.+..+.|+|..+..+|||+.||.|++||
T Consensus       429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999999999999999999999999999999999999999999999989999999999999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus Back     alignment and domain information
>COG5276 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10115 protease 2; Provisional Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 Back     alignment and domain information
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 Back     alignment and domain information
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>COG5276 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>PRK10115 protease 2; Provisional Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] Back     alignment and domain information
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins Back     alignment and domain information
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus Back     alignment and domain information
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] Back     alignment and domain information
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 Back     alignment and domain information
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins Back     alignment and domain information
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family Back     alignment and domain information
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2377 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] Back     alignment and domain information
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat Back     alignment and domain information
>PF13449 Phytase-like: Esterase-like activity of phytase Back     alignment and domain information
>KOG2377 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates Back     alignment and domain information
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] Back     alignment and domain information
>PF12768 Rax2: Cortical protein marker for cell polarity Back     alignment and domain information
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 Back     alignment and domain information
>TIGR03032 conserved hypothetical protein TIGR03032 Back     alignment and domain information
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat Back     alignment and domain information
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) Back     alignment and domain information
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) Back     alignment and domain information
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
2xl2_A334 Wdr5 In Complex With An Rbbp5 Peptide Recruited To 6e-22
2gnq_A336 Structure Of Wdr5 Length = 336 7e-22
3emh_A318 Structural Basis Of Wdr5-Mll Interaction Length = 3 1e-21
4a7j_A318 Symmetric Dimethylation Of H3 Arginine 2 Is A Novel 1e-21
2h68_A312 Histone H3 Recognition And Presentation By The Wdr5 1e-21
3smr_A312 Crystal Structure Of Human Wd Repeat Domain 5 With 2e-21
2h9l_A329 Wdr5delta23 Length = 329 2e-21
2h9m_A313 Wdr5 In Complex With Unmodified H3k4 Peptide Length 2e-21
2g99_A308 Structural Basis For The Specific Recognition Of Me 2e-21
2h13_A317 Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length 2e-21
3psl_A318 Fine-Tuning The Stimulation Of Mll1 Methyltransfera 2e-21
2g9a_A311 Structural Basis For The Specific Recognition Of Me 2e-21
3n0e_A315 Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 3e-21
3n0d_A315 Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 3e-21
3mxx_A315 Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 6e-21
2cnx_A315 Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. 8e-21
2co0_A315 Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs 1e-20
2ymu_A 577 Structure Of A Highly Repetitive Propeller Structur 4e-08
2aq5_A402 Crystal Structure Of Murine Coronin-1 Length = 402 1e-06
2aq5_A402 Crystal Structure Of Murine Coronin-1 Length = 402 2e-04
2b4e_A402 Crystal Structure Of Murine Coronin-1: Monoclinic F 2e-06
2b4e_A402 Crystal Structure Of Murine Coronin-1: Monoclinic F 3e-04
3dm0_A694 Maltose Binding Protein Fusion With Rack1 From A. T 2e-06
2xzm_R343 Crystal Structure Of The Eukaryotic 40s Ribosomal S 6e-06
3gfc_A425 Crystal Structure Of Histone-Binding Protein Rbbp4 6e-06
3jyv_R313 Structure Of The 40s Rrna And Proteins And PE TRNA 3e-05
1trj_A314 Homology Model Of Yeast Rack1 Protein Fitted Into 1 3e-05
3izb_a319 Localization Of The Small Subunit Ribosomal Protein 3e-05
3rfg_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 3e-05
3rfh_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 3e-05
3c99_A432 Structural Basis Of Histone H4 Recognition By P55 L 4e-05
2xyi_A430 Crystal Structure Of Nurf55 In Complex With A H4 Pe 4e-05
2yba_A422 Crystal Structure Of Nurf55 In Complex With Histone 4e-05
2zkq_a317 Structure Of A Mammalian Ribosomal 40s Subunit With 7e-05
4aow_A340 Crystal Structure Of The Human Rack1 Protein At A R 8e-05
3zey_7318 High-resolution Cryo-electron Microscopy Structure 1e-04
3frx_A319 Crystal Structure Of The Yeast Orthologue Of Rack1, 1e-04
3iz6_a380 Localization Of The Small Subunit Ribosomal Protein 1e-04
3cfs_B414 Structural Basis Of The Interaction Of Rbap46RBAP48 3e-04
3cfv_B414 Structural Basis Of The Interaction Of Rbap46RBAP48 3e-04
3fm0_A345 Crystal Structure Of Wd40 Protein Ciao1 Length = 34 4e-04
2hes_X330 Cytosolic Iron-sulphur Assembly Protein- 1 Length = 5e-04
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)
Query: 137 LSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDV 196
           L   L  HTKAV+S+ +SP +   LAS+  D+ I IW  +  D K  + ++ H   ++DV
Sbjct: 37  LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDV 93
Query: 197 KWSQQGLFVLSCGYDCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGL 255
            WS     ++S   D + ++ DV  G   ++ +     V    F+P+ SNL +SG     
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES 152
Query: 256 LRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQFXXXXXXXXXXXXXXXIVVWDVSREVP 315
           +R+WD++TGK          P+  V F  +G                    +WD +    
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR-------IWDTASGQC 205
Query: 316 LSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVSGFPI 375
           L   +  +      V+  P   Y +A +  N + ++  +    L   K Y  H    + I
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCI 262
Query: 376 KCSFSLDGEK-LVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSW 434
             +FS+ G K +VSGS D  +Y +N ++ E+ +K++ +    I  A HP   NII S + 
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAAL 321
Query: 435 NGDVSV 440
             D ++
Sbjct: 322 ENDKTI 327
>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 Back     alignment and structure
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 Back     alignment and structure
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 Back     alignment and structure
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 Back     alignment and structure
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 Back     alignment and structure
>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 Back     alignment and structure
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 Back     alignment and structure
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 Back     alignment and structure
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 Back     alignment and structure
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 Back     alignment and structure
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 Back     alignment and structure
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 Back     alignment and structure
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 Back     alignment and structure
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 Back     alignment and structure
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 Back     alignment and structure
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 Back     alignment and structure
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 Back     alignment and structure
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 Back     alignment and structure
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 Back     alignment and structure
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 Back     alignment and structure
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 Back     alignment and structure
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 Back     alignment and structure
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 Back     alignment and structure
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 Back     alignment and structure
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 Back     alignment and structure
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 Back     alignment and structure
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 Back     alignment and structure
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 Back     alignment and structure
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 Back     alignment and structure
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 Back     alignment and structure
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 Back     alignment and structure
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 Back     alignment and structure
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 Back     alignment and structure
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 Back     alignment and structure
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 Back     alignment and structure
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 Back     alignment and structure
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 Back     alignment and structure
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 Back     alignment and structure
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 Back     alignment and structure
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 Back     alignment and structure
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
3ow8_A321 WD repeat-containing protein 61; structural genomi 100.0
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 100.0
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 100.0
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 100.0
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 100.0
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 100.0
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 100.0
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 100.0
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 100.0
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 100.0
4g56_B357 MGC81050 protein; protein arginine methyltransfera 100.0
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 100.0
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 100.0
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 100.0
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 100.0
1nr0_A 611 Actin interacting protein 1; beta propeller, WD40 100.0
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 100.0
2ymu_A577 WD-40 repeat protein; unknown function, two domain 100.0
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 100.0
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 100.0
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 100.0
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 100.0
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 100.0
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 100.0
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 100.0
4e54_B435 DNA damage-binding protein 2; beta barrel, double 100.0
2ymu_A577 WD-40 repeat protein; unknown function, two domain 100.0
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 100.0
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 100.0
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 100.0
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 100.0
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 100.0
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 100.0
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 100.0
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 100.0
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 100.0
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 100.0
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 100.0
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 100.0
3ow8_A321 WD repeat-containing protein 61; structural genomi 100.0
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 100.0
2pm7_B297 Protein transport protein SEC13, protein transport 100.0
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 100.0
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 100.0
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 100.0
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 100.0
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 100.0
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 100.0
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 100.0
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 100.0
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 100.0
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 100.0
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 100.0
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 100.0
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 100.0
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 100.0
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 100.0
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 100.0
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 100.0
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 100.0
4g56_B357 MGC81050 protein; protein arginine methyltransfera 100.0
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 100.0
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 100.0
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 100.0
2pm7_B297 Protein transport protein SEC13, protein transport 100.0
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 100.0
3jrp_A379 Fusion protein of protein transport protein SEC13 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 100.0
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 100.0
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 100.0
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 100.0
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 100.0
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 100.0
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 100.0
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 100.0
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 100.0
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 100.0
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 100.0
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 100.0
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 100.0
3jrp_A379 Fusion protein of protein transport protein SEC13 100.0
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 100.0
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 100.0
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 100.0
2xyi_A430 Probable histone-binding protein CAF1; transcripti 100.0
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 100.0
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 100.0
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 100.0
3jro_A 753 Fusion protein of protein transport protein SEC13 100.0
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 100.0
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 100.0
2j04_A 588 TAU60, YPL007P, hypothetical protein YPL007C; beta 100.0
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 100.0
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 100.0
4e54_B435 DNA damage-binding protein 2; beta barrel, double 100.0
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 100.0
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 100.0
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 100.0
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 100.0
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 100.0
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 100.0
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 100.0
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 100.0
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 100.0
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 100.0
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 100.0
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 100.0
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 100.0
3jro_A 753 Fusion protein of protein transport protein SEC13 100.0
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 100.0
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 100.0
2j04_A 588 TAU60, YPL007P, hypothetical protein YPL007C; beta 100.0
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 100.0
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 100.0
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 100.0
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 100.0
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 100.0
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 100.0
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 100.0
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 100.0
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 99.98
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 99.97
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 99.97
2xyi_A430 Probable histone-binding protein CAF1; transcripti 99.97
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 99.97
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 99.97
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 99.97
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 99.96
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 99.96
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 99.96
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 99.96
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 99.96
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.95
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 99.94
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 99.94
1xfd_A 723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 99.94
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 99.94
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 99.94
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 99.94
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 99.94
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 99.94
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 99.93
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 99.93
1xfd_A 723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 99.93
1k32_A 1045 Tricorn protease; protein degradation, substrate g 99.93
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 99.93
1k32_A 1045 Tricorn protease; protein degradation, substrate g 99.93
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 99.93
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 99.92
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.92
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 99.92
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 99.92
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 99.92
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 99.92
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 99.91
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 99.91
1z68_A 719 Fibroblast activation protein, alpha subunit; sepr 99.9
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 99.89
1z68_A 719 Fibroblast activation protein, alpha subunit; sepr 99.88
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 99.88
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 99.87
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 99.87
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 99.87
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 99.86
4a5s_A 740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 99.86
3azo_A 662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 99.86
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 99.85
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 99.84
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 99.84
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 99.83
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 99.83
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 99.82
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 99.81
4a5s_A 740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 99.81
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 99.81
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 99.81
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 99.79
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 99.79
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 99.79
3azo_A 662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 99.79
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 99.79
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 99.79
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 99.77
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 99.76
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 99.76
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 99.76
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 99.74
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 99.74
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 99.73
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 99.73
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 99.73
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 99.72
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 99.72
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 99.71
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 99.7
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 99.7
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 99.69
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 99.68
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 99.67
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 99.67
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 99.67
2qe8_A343 Uncharacterized protein; structural genomics, join 99.66
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 99.64
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 99.61
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 99.61
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 99.61
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 99.61
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 99.6
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 99.6
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 99.59
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 99.58
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 99.56
1xip_A 388 Nucleoporin NUP159; beta-propeller, transport prot 99.55
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 99.55
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 99.54
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 99.53
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 99.52
3iuj_A 693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 99.51
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 99.5
2ece_A462 462AA long hypothetical selenium-binding protein; 99.48
3iuj_A 693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 99.48
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 99.47
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 99.44
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.41
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 99.39
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 99.39
2hz6_A 369 Endoplasmic reticulum to nucleus signalling 1 isof 99.39
2ece_A462 462AA long hypothetical selenium-binding protein; 99.38
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 99.38
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.37
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 99.36
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 99.36
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 99.35
2qe8_A343 Uncharacterized protein; structural genomics, join 99.34
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 99.33
1fwx_A 595 Nitrous oxide reductase; beta-propeller domain, cu 99.3
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 99.28
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 99.24
1fwx_A 595 Nitrous oxide reductase; beta-propeller domain, cu 99.24
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 99.23
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 99.23
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 99.21
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 99.17
2p4o_A306 Hypothetical protein; putative lactonase, structur 99.15
2p4o_A306 Hypothetical protein; putative lactonase, structur 99.11
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 99.09
1kv9_A 668 Type II quinohemoprotein alcohol dehydrogenase; el 99.08
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 99.08
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 99.08
1kv9_A 668 Type II quinohemoprotein alcohol dehydrogenase; el 99.06
2fp8_A322 Strictosidine synthase; six bladed beta propeller 99.05
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 99.04
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 99.0
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 99.0
2fp8_A322 Strictosidine synthase; six bladed beta propeller 99.0
4a2l_A 795 BT_4663, two-component system sensor histidine kin 98.98
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 98.98
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.98
4a2l_A 795 BT_4663, two-component system sensor histidine kin 98.96
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 98.94
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 98.92
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 98.91
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 98.9
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 98.9
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 98.89
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 98.87
3v65_B386 Low-density lipoprotein receptor-related protein; 98.85
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 98.82
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 98.82
3v9f_A 781 Two-component system sensor histidine kinase/RESP 98.81
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 98.8
3p5b_L400 Low density lipoprotein receptor variant; B-propel 98.79
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 98.78
3v65_B386 Low-density lipoprotein receptor-related protein; 98.76
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 98.75
3v9f_A 781 Two-component system sensor histidine kinase/RESP 98.75
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 98.74
1bpo_A 494 Protein (clathrin); clathrin endocytosis beta-prop 98.72
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 98.7
3kya_A496 Putative phosphatase; structural genomics, joint c 98.7
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 98.68
2xe4_A 751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 98.67
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 98.67
3p5b_L400 Low density lipoprotein receptor variant; B-propel 98.64
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 98.59
3s94_A 619 LRP-6, low-density lipoprotein receptor-related pr 98.58
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 98.56
2xe4_A 751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 98.51
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 98.51
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 98.46
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 98.43
2ism_A352 Putative oxidoreductase; BL41XU spring-8, bladed b 98.42
3kya_A496 Putative phosphatase; structural genomics, joint c 98.4
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 98.4
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 98.39
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 98.39
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 98.37
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 98.26
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 98.26
3s94_A 619 LRP-6, low-density lipoprotein receptor-related pr 98.25
3amr_A355 3-phytase; beta-propeller, phytate, MYO-inositol h 98.24
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.15
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 98.15
2ism_A352 Putative oxidoreductase; BL41XU spring-8, bladed b 98.14
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 98.13
3amr_A355 3-phytase; beta-propeller, phytate, MYO-inositol h 98.12
3a9g_A354 Putative uncharacterized protein; PQQ dependent de 98.12
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.09
3a9g_A354 Putative uncharacterized protein; PQQ dependent de 98.08
2g8s_A353 Glucose/sorbosone dehydrogenases; bladed beta-prop 98.04
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.02
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 98.0
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 97.96
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 97.91
2g8s_A353 Glucose/sorbosone dehydrogenases; bladed beta-prop 97.88
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 97.82
1cru_A 454 Protein (soluble quinoprotein glucose dehydrogena; 97.69
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 97.67
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 97.57
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 97.57
3ott_A 758 Two-component system sensor histidine kinase; beta 97.56
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 97.55
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 97.5
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 97.5
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 97.45
3das_A347 Putative oxidoreductase; aldose sugar dehydrogenas 97.44
3das_A347 Putative oxidoreductase; aldose sugar dehydrogenas 97.4
3pbp_A 452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 97.38
3pbp_A 452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 97.31
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 97.29
3sbq_A 638 Nitrous-oxide reductase; beta-propeller, cupredoxi 97.29
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 97.14
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 97.13
2xzh_A365 Clathrin heavy chain 1; endocytosis, endocytosis i 97.12
3sbq_A 638 Nitrous-oxide reductase; beta-propeller, cupredoxi 97.08
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 97.07
1bpo_A 494 Protein (clathrin); clathrin endocytosis beta-prop 97.01
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 97.01
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 96.98
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 96.95
1cru_A 454 Protein (soluble quinoprotein glucose dehydrogena; 96.94
3s25_A302 Hypothetical 7-bladed beta-propeller-like protein; 96.86
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 96.79
3ott_A 758 Two-component system sensor histidine kinase; beta 96.77
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 96.67
3s25_A302 Hypothetical 7-bladed beta-propeller-like protein; 96.6
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 96.0
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 95.72
2wg3_C 463 Hedgehog-interacting protein; lipoprotein, develop 95.13
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 94.4
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 93.92
2wg3_C 463 Hedgehog-interacting protein; lipoprotein, develop 93.75
3q6k_A381 43.2 kDa salivary protein; beta propeller, binding 92.37
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 92.13
1zi0_A307 DNA gyrase subunit A; beta pinwheel, topoisomerase 90.31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 90.24
3l6v_A 370 GYRA, DNA gyrase subunit A; gyrase A C-terminal do 90.11
4gq2_M 950 Nucleoporin NUP120; beta propeller alpha helical, 90.0
4hvt_A 711 Ritya.17583.B, post-proline cleaving enzyme; ssgci 88.92
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 88.11
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 86.17
1wp5_A323 Topoisomerase IV; broken beta-propeller, hairpin-i 85.43
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 85.41
4gq2_M 950 Nucleoporin NUP120; beta propeller alpha helical, 84.9
3l6v_A370 GYRA, DNA gyrase subunit A; gyrase A C-terminal do 83.04
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 82.83
1sqj_A 789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 82.03
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 81.61
1sqj_A 789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 80.36
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.6e-49  Score=357.42  Aligned_cols=294  Identities=19%  Similarity=0.286  Sum_probs=263.5

Q ss_pred             CCcceecccccccceEEEEeeCC---CCCEEEEecCCCcEEEEEcccCCcceeeeeccCCCceeEEEeCCCCCEEEEEec
Q 013475          134 PGRLSTALCHHTKAVNSINWSPT---HAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGLFVLSCGY  210 (442)
Q Consensus       134 ~~~~~~~l~~h~~~V~~~~~s~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  210 (442)
                      .+.+.+.+++|.+.|++++|+++   ++.+|++|+.|++|+||++..........+.+|...|.+++|++++.++++++.
T Consensus        21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~  100 (321)
T 3ow8_A           21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL  100 (321)
T ss_dssp             CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence            35566788899999999999985   267999999999999999976655566778999999999999999999999999


Q ss_pred             CCcEEEEECCCCcEEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCEE
Q 013475          211 DCSSRLVDVEKGIETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQF  289 (442)
Q Consensus       211 d~~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  289 (442)
                      |++|++||+.+++.+..+. +...+.+++|+|++ .+|++++.||.|++||+++++....+..+...|.+++|+|++++|
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            9999999999999988887 67789999999996 899999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeecc
Q 013475          290 VSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHG  369 (442)
Q Consensus       290 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  369 (442)
                      ++++.       |+.|++||+++++.+..+ ..+...+.+++|+|++++|++++.|+.|++||+......   ..+.  .
T Consensus       180 asg~~-------dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~---~~~~--~  246 (321)
T 3ow8_A          180 ASGAI-------DGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA---GTLS--G  246 (321)
T ss_dssp             EEEET-------TSCEEEEETTTTEEEEEE-CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE---EEEC--C
T ss_pred             EEEcC-------CCeEEEEECCCCcEEEEE-cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee---EEEc--C
Confidence            99998       999999999988766544 346668999999999999999999999999999876543   3333  3


Q ss_pred             cccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475          370 VSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE  442 (442)
Q Consensus       370 ~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  442 (442)
                      +...|.+++|+|++++|++++.||.|+|||+.+++++.++.+|...|.+++|+|++ .+|++++.||.|+|||
T Consensus       247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCCEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEe
Confidence            45779999999999999999999999999999999999999999999999999998 7999999999999997
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} Back     alignment and structure
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} Back     alignment and structure
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Back     alignment and structure
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A Back     alignment and structure
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Back     alignment and structure
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Back     alignment and structure
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B Back     alignment and structure
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B Back     alignment and structure
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 7e-26
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 1e-10
d1vyhc1 317 b.69.4.1 (C:92-408) Platelet-activating factor ace 4e-10
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 6e-21
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 3e-10
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 1e-16
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 7e-15
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 2e-07
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 2e-15
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 9e-14
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 4e-08
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 1e-13
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 3e-08
d1k8kc_ 371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 3e-06
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 2e-05
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 4e-04
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 0.001
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 9e-13
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 6e-04
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 2e-12
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 8e-09
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 8e-08
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 2e-05
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 2e-05
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 3e-12
d1p22a2 293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 5e-04
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 7e-04
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 4e-12
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 3e-05
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 2e-04
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 8e-04
d1nr0a1 311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 0.002
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 5e-12
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 3e-09
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 1e-11
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 9e-09
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 3e-04
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 2e-11
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 5e-05
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 2e-11
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 3e-07
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 1e-04
d1jmxb_346 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 3e-10
d1jmxb_ 346 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 8e-04
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 1e-09
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 1e-04
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 1e-04
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 7e-04
d1pbyb_337 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 3e-09
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 7e-09
d1k32a3 360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 0.003
d2bbkh_355 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 1e-04
d2bbkh_355 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 3e-04
d1qksa2 432 b.70.2.1 (A:136-567) C-terminal (heme d1) domain o 2e-04
d1qksa2432 b.70.2.1 (A:136-567) C-terminal (heme d1) domain o 0.004
d1mdah_368 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 4e-04
d1l0qa2301 b.69.2.3 (A:1-301) Surface layer protein {Archaeon 5e-04
d1l0qa2301 b.69.2.3 (A:1-301) Surface layer protein {Archaeon 0.001
d1hzua2 426 b.70.2.1 (A:118-543) C-terminal (heme d1) domain o 9e-04
d1ri6a_333 b.69.11.1 (A:) Putative isomerase YbhE {Escherichi 0.004
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 7e-26
 Identities = 53/311 (17%), Positives = 113/311 (36%), Gaps = 21/311 (6%)

Query: 144 HTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQKLARVLNFHSAAVNDVKWSQQGL 203
           H   V  + + P    ++ SA  D +I +W+         R L  H+ +V D+ +   G 
Sbjct: 16  HRSPVTRVIFHPVF-SVMVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 204 FVLSCGYDCSSRLVDVEKGIETQSFREELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRT 263
            + SC  D + +L D +     ++               N +  +S      +++W+++T
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132

Query: 264 GKVAHEYIQSLGPILDVEFTINGKQFVSSSD------------VSGSNMSENSIVVWDVS 311
           G     +      +  V    +G    S S+               + + E+  VV  +S
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192

Query: 312 REVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESHGVS 371
                S     EA      +     P+ ++ S    I ++  +    L         G  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-----GHD 247

Query: 372 GFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGS 431
            +     F   G+ ++S + D ++  ++ ++    + + A+E     + FH   P ++ +
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-T 306

Query: 432 CSWNGDVSVYE 442
            S +  V V+E
Sbjct: 307 GSVDQTVKVWE 317
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1tbga_340 beta1-subunit of the signal-transducing G protein 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 100.0
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 100.0
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 100.0
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 100.0
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 100.0
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 100.0
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 100.0
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 100.0
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 100.0
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 100.0
d1tbga_340 beta1-subunit of the signal-transducing G protein 100.0
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.97
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.97
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.97
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.97
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.97
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.96
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.96
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.95
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.95
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.95
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.95
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.93
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.92
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.92
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.91
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.91
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.9
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.89
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.87
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.86
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.84
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.84
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.84
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.81
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.75
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 99.68
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.67
d2bgra1 470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.6
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 99.5
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.49
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 99.47
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 99.46
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 99.46
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 99.42
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 99.4
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 99.38
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 99.35
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 99.35
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 99.3
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 99.23
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 99.23
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 99.21
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 99.12
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 99.1
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 99.02
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 98.98
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 98.83
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 98.77
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 98.63
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 98.55
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.5
d1fwxa2459 Nitrous oxide reductase, N-terminal domain {Paraco 98.47
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 98.46
d1fwxa2459 Nitrous oxide reductase, N-terminal domain {Paraco 98.35
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 98.23
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 98.21
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 98.17
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 97.9
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 97.81
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 97.79
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 97.73
d2ad6a1 571 Methanol dehydrogenase, heavy chain {Methylophilus 97.64
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.62
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 97.61
d1w6sa_ 596 Methanol dehydrogenase, heavy chain {Methylobacter 97.6
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 97.48
d1kb0a2 573 Quinoprotein alcohol dehydrogenase, N-terminal dom 97.39
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 97.38
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 96.97
d1v04a_ 340 Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory 96.92
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 96.88
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 96.81
d1h6la_353 Thermostable phytase (3-phytase) {Bacillus amyloli 96.45
d1xipa_ 381 Nucleoporin NUP159 {Baker's yeast (Saccharomyces c 96.43
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 96.35
d1h6la_353 Thermostable phytase (3-phytase) {Bacillus amyloli 96.08
d1flga_ 582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 95.91
d1crua_ 450 Soluble quinoprotein glucose dehydrogenase {Acinet 95.63
d1crua_ 450 Soluble quinoprotein glucose dehydrogenase {Acinet 95.57
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 95.21
d1v04a_340 Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory 95.2
d1xipa_381 Nucleoporin NUP159 {Baker's yeast (Saccharomyces c 95.01
d2hu7a1313 Acylamino-acid-releasing enzyme, N-terminal donain 93.21
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 87.42
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 87.11
d1wp5a_323 Topoisomerase IV subunit A, ParC, C-terminal domai 81.64
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-45  Score=329.58  Aligned_cols=287  Identities=13%  Similarity=0.198  Sum_probs=250.1

Q ss_pred             CcceecccccccceEEEEeeCCCCCEEEEecCCCcEEEEEcccCCcc---eeeeeccCCCceeEEEeCCCCCEEEEEecC
Q 013475          135 GRLSTALCHHTKAVNSINWSPTHAHLLASAGMDQSICIWNVWSRDQK---LARVLNFHSAAVNDVKWSQQGLFVLSCGYD  211 (442)
Q Consensus       135 ~~~~~~l~~h~~~V~~~~~s~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  211 (442)
                      .+.++++ +|...|+|++|+|+ +++|++|+ ||.|+|||+.+....   ......+|.+.|.+++|+|++++|++++.|
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             ceEEEEC-CCCCcEEEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            3555666 79999999999999 99999998 899999999654322   233445799999999999999999999999


Q ss_pred             CcEEEEECCCCc--EEEeee-CCcceEEEEEccCCCCEEEEeeCCCcEEEEECCCCceEEEeccCCCCEeEEEEeeCCCE
Q 013475          212 CSSRLVDVEKGI--ETQSFR-EELAVRVVKFHPENSNLFLSGGSKGLLRLWDIRTGKVAHEYIQSLGPILDVEFTINGKQ  288 (442)
Q Consensus       212 ~~v~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (442)
                      |.|++||+....  ....+. +...+.+++|++++ .++++++.|+.|++||+++++.......|...|.+++|++++..
T Consensus       119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999987553  444444 78889999999985 89999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCCcCCCCeEEEEeCCCCcccceeeccccceeeeEEecCCCCeeEEEeCCCeEEEeeCCCCcccccceeEeec
Q 013475          289 FVSSSDVSGSNMSENSIVVWDVSREVPLSKQVYVEAYTCPCVRHHPFDPYFVAQSNGNYIAIFSSTPPFRLDKFKRYESH  368 (442)
Q Consensus       289 l~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~  368 (442)
                      +++++.       |+.|++||+++++.+...  .+...+.+++|+|++.++++++.++.+++|+++.....      ...
T Consensus       198 ~~~~~~-------d~~v~i~d~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~  262 (337)
T d1gxra_         198 LWTGGL-------DNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY------QLH  262 (337)
T ss_dssp             EEEEET-------TSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE------EEC
T ss_pred             cccccc-------cccccccccccceeeccc--ccccceEEEEEcccccccceeccccccccccccccccc------ccc
Confidence            999998       999999999988766544  35567899999999999999999999999999876432      334


Q ss_pred             ccccCcEEEEEccCCCEEEEecCCCcEEEEecCCceeeEeeeccCCceeEEEEcCCCCCEEEEeeCCCcEEEcC
Q 013475          369 GVSGFPIKCSFSLDGEKLVSGSSDGSIYFYNCRSSELERKIKAYEQACIDVAFHPILPNIIGSCSWNGDVSVYE  442 (442)
Q Consensus       369 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  442 (442)
                      .+...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. |...|.+++|+|++ ++|++|+.||+|+|||
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~-~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDD-KYIVTGSGDKKATVYE  334 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-CEEEEEETTSCEEEEE
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE
Confidence            556779999999999999999999999999999999887765 78899999999998 7999999999999997
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} Back     information, alignment and structure
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure