Citrus Sinensis ID: 013480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSETPIKGPGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHHQYSQEPQQHLPHNYPSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTASYQLTSEYSSSSRNGTISEPPPAQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSAGQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHcccEEEHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
masetepakLLLPYLQRADelqkheplVAYYCRLYAMerglripqgertkTTNSLLVSLMNQLEKdkkslklgpedslhlEGFALNVFAkadkqdragradlNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMkegrkpvpgppgggedlsippstpavsydigtsetpikgpgsdsdpssqfpdrldhysanvsppspfpdrldhysanvspppqfhdkvsnqhssdipppppthdfhptslnrsdsssyshpssgypthdfhppppanrsenstysqpyhhqysqepqqhlphnypsqenptynypnfqsypsftessipsipshypsyyqgsdipyspqsavpaptasyqltseyssssrngtisepppaqkyqydsnyqpppekiSEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSAGQ
Flexible Loop (DISEMBL)
MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERglripqgertkTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSetpikgpgsdSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHHQYSQEPQQHLPHNYPSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTASYQLTSEYssssrngtisepppaqkyqyDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSlelltnpsagq
Low Complexity Region (SEG)
MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKpvpgppgggEDLSIPPSTPAVSYDIGTSETPIKGPGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQHSSDIpppppTHDFHPTSLNRsdsssyshpssGYPTHDFHPPPPANRSENSTYSQPYHHQYSQEPQQHLPHNYPSQENPTYNYPNFQSYPSFTEssipsipshypsyyQGSDIPYSPQSAVPAPTAsyqltseyssssRNGTISEPPPAQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSAGQ
Disordered region (IsUnstruct)
*********LLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIP***********L*********************LHLEGFALNVFAKADK**RAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAA***************************************************************************************************************************************************************************************************************************************************************************AARFAVGALAFDDVSVAVDYLKKSLEL********
Disordered Region (DISOPRED)
******P**LLLPYLQRADELQKHEPLVAYYCRLYAMERGL************SLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMK**********************************************************************************************************************************************************************************************************************************************************************RFAVGALAFDDVSVAVDYLKKSL***T******
Disordered Region (DISEMBL)
MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSET**************FPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHD***********PPPPTHDFHPTS******************HDFHPPP************************HLPHNYPSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTASY*****************PPPAQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSAGQ
Disordered Region (DISPRO)
****TEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRK**********************************************************************************************************************************************************************************************************************************************QYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSETPIKGPGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHHQYSQEPQQHLPHNYPSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTASYQLTSEYSSSSRNGTISEPPPAQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSAGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q32L63	307	Vacuolar protein sorting-	yes	no	0.328	0.472	0.414	1e-26
Q55B11	550	Vacuolar protein sorting-	yes	no	0.325	0.261	0.385	1e-26
Q9NP79	307	Vacuolar protein sorting-	yes	no	0.319	0.459	0.411	6e-26
Q5R5W5	307	Vacuolar protein sorting-	yes	no	0.319	0.459	0.411	7e-26
Q9CR26	309	Vacuolar protein sorting-	yes	no	0.319	0.456	0.411	9e-26
Q9LYS6	1921	Putative callose synthase	no	no	0.266	0.061	0.278	6e-08
O13703	389	Vacuolar protein sorting-	yes	no	0.307	0.349	0.239	1e-07
Q9SL03	1950	Callose synthase 2 OS=Ara	no	no	0.262	0.059	0.275	3e-07
Q9AUE0	1950	Callose synthase 1 OS=Ara	no	no	0.255	0.057	0.276	3e-07
Q9LXT9	1955	Callose synthase 3 OS=Ara	no	no	0.266	0.060	0.272	7e-07

>sp|Q32L63|VTA1_BOVIN Vacuolar protein sorting-associated protein VTA1 homolog OS=Bos taurus GN=VTA1 PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 12/157 (7%)

Query: 14  YLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLG 73
           +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK  +LG
Sbjct: 20  HLRTAQEHDKRDPVVAYYCRLYAMQTGMKI--DSKTPECRKFLSRLMDQLEALKK--QLG 75

Query: 74  PEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQ 125
             +++        HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG L 
Sbjct: 76  DNEAITQEIVGSAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELT 135

Query: 126 PDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGED 162
            +  + +KYA WKA  I   +K G  P  GP G  ED
Sbjct: 136 DENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEED 172

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Thought to be a cofactor of VPS4A/B, which catalyzes disassembles membrane-associated ESCRT-III assemblies. Involved in the sorting and down-regulation of EGFR.
Bos taurus (taxid: 9913)

>sp|Q55B11|VTA1_DICDI Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoideum GN=vta1 PE=3 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 100/153 (65%), Gaps = 9/153 (5%)

Query: 11  LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLL----VSLMNQLEKD 66
           ++PYL+++ +L+KH+ L+AYYCR++A++  + I Q  +   + S L    V +++Q + D
Sbjct: 13  IIPYLKQSQQLEKHDLLMAYYCRVHAIQMAMDIKQ--KMGASGSFLSIPIVKILDQGDAD 70

Query: 67  KKSL--KLGPED-SLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGA 123
           K  L  +L  ED + ++E FA+  F+ AD QDRAG+A+  T+ TFY+A +FF +L   G 
Sbjct: 71  KAKLGSRLDEEDEAKYVEAFAMKAFSFADTQDRAGKANKATSTTFYSAFLFFNVLEHMGE 130

Query: 124 LQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGP 156
           +  +++ K+KYA+W++ DI  A+K G  P P P
Sbjct: 131 VSEEVKLKKKYASWRSVDINTAIKNGVAPSPPP 163

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins. Thought to be a cofactor of VPS4, which catalyzes the disassembly of membrane-associated ESCRT-III.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9NP79|VTA1_HUMAN Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens GN=VTA1 PE=1 SV=1

 Score =  119 bits (297), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 12/153 (7%)

Query: 14  YLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLG 73
           +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK  +LG
Sbjct: 20  HLRTAQEHDKRDPVVAYYCRLYAMQTGMKID--SKTPECRKFLSKLMDQLEALKK--QLG 75

Query: 74  PEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQ 125
             +++        HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG L 
Sbjct: 76  DNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELT 135

Query: 126 PDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPG 158
            +  + +KYA WKA  I   +K G  P  GP G
Sbjct: 136 DENVKHRKYARWKATYIHNCLKNGETPQAGPVG 168

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Thought to be a cofactor of VPS4A/B, which catalyzes disassembles membrane-associated ESCRT-III assemblies. Involved in the sorting and down-regulation of EGFR (By similarity). Involved in HIV-1 budding.

Homo sapiens (taxid: 9606)

>sp|Q5R5W5|VTA1_PONAB Vacuolar protein sorting-associated protein VTA1 homolog OS=Pongo abelii GN=VTA1 PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 12/153 (7%)

Query: 14  YLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLG 73
           +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK  +LG
Sbjct: 20  HLRTAQEHDKRDPVVAYYCRLYAMQTGMKID--SKTPECRKFLSKLMDQLEALKK--QLG 75

Query: 74  PEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQ 125
             +++        HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG L 
Sbjct: 76  DNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELT 135

Query: 126 PDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPG 158
            +  + +KYA WKA  I   +K G  P  GP G
Sbjct: 136 DENVKHRKYARWKATYIHNCLKNGETPQAGPVG 168

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Thought to be a cofactor of VPS4A/B, which catalyzes disassembles membrane-associated ESCRT-III assemblies. Involved in the sorting and down-regulation of EGFR.

Pongo abelii (taxid: 9601)

>sp|Q9CR26|VTA1_MOUSE Vacuolar protein sorting-associated protein VTA1 homolog OS=Mus musculus GN=Vta1 PE=1 SV=1

 Score =  118 bits (296), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 12/153 (7%)

Query: 14  YLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLG 73
           +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK  +LG
Sbjct: 20  HLRTAQEHDKRDPVVAYYCRLYAMQTGMKID--SKTPECRKFLSKLMDQLEALKK--QLG 75

Query: 74  PEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQ 125
             +++        HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG L 
Sbjct: 76  DNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELT 135

Query: 126 PDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPG 158
            +  + +KYA WKA  I   +K G  P  GP G
Sbjct: 136 DENVKHRKYARWKATYIHNCLKNGETPQAGPVG 168

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Thought to be a cofactor of VPS4A/B, which catalyzes disassembles membrane-associated ESCRT-III assemblies (By similarity). Involved in the sorting and down-regulation of EGFR.

Mus musculus (taxid: 10090)

>sp|Q9LYS6|CALS6_ARATH Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MASETEPAKL--LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVS 58
           M SE  P+ L  + P L+ A+E++K  P VAY CR +A E+  R+      +        
Sbjct: 38  MDSELVPSSLASIAPILRVANEIEKDNPRVAYLCRFHAFEKAHRMDATSSGRGVRQFKTY 97

Query: 59  LMNQLEKDKKSLK--LGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFE 116
           L+++LEK+++  K  L   D   ++ +  N + K  K+    R     A+ +  AS+ ++
Sbjct: 98  LLHRLEKEEEETKPQLAKNDPREIQAYYQNFYEKYIKEGETSRKPEEMARLYQIASVLYD 157

Query: 117 IL 118
           +L
Sbjct: 158 VL 159

Probably involved in callose synthesis, but not required for callose formation after wounding or pathogen attack. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|O13703|VTA1_SCHPO Vacuolar protein sorting-associated protein vts1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vts1 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 13  PYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSL-- 70
           P+++R +EL+ H P++AY+   +A +  L    G   +  +  L+SL+  LE  +K+L  
Sbjct: 16  PFVRRFNELEAHNPVIAYWSLYWAAQMALSSSHGVSNECKD-FLLSLIEHLEDLRKNLGE 74

Query: 71  --KLGPEDS--LHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQP 126
              +  E S   ++E F+L V  +A++  + G+ D+   + + AA  F E+   +G    
Sbjct: 75  NENVSDETSAKAYVESFSLEVLVQAERNSKNGKPDV---QAYLAARDFLELSRIWGPPTE 131

Query: 127 DLEEKQKYAAWKAADIRKAMKEGRKP 152
            + +  K+   +A  +    ++ + P
Sbjct: 132 QITKSIKFCKLRALQVANPQRKAKTP 157

Has a role in the formation of the multivesicular body (MVB). Required for the sorting of lipids to form intralumenal vesicles and for fluid-phase transport to the vacuole. Required for sorting several plasma membrane proteins into the MVB.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9SL03|CALS2_ARATH Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 11/127 (8%)

Query: 1   MASETEPAKL--LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVS 58
           + SE  P+ L  + P L+ A+E++   P VAY CR YA E+  R+      +       +
Sbjct: 30  LDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTA 89

Query: 59  LMNQLEKDKKSLKLGPE--DSLHLEGFALNVFAK-----ADKQDRAGRADLNTAKTFYAA 111
           L+ +LE++ ++   G +  D+  ++ F  + + K      +  D+A RA L   K +  A
Sbjct: 90  LLQRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALQNAADKADRAQL--TKAYQTA 147

Query: 112 SIFFEIL 118
           ++ FE+L
Sbjct: 148 AVLFEVL 154

Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9AUE0|CALS1_ARATH Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 17/130 (13%)

Query: 1   MASETEPAKL--LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVS 58
           + SE  P+ L  + P L+ A+E++   P VAY CR YA E+  R+      +       +
Sbjct: 30  LDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTA 89

Query: 59  LMNQLEKDKKSLKLGPE--DSLHLEGFALNVFAK--------ADKQDRAGRADLNTAKTF 108
           L+ +LE++ ++   G +  D+  ++ F  + + K        ADK DRA        K +
Sbjct: 90  LLQRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALLNAADKADRA-----QLTKAY 144

Query: 109 YAASIFFEIL 118
             A++ FE+L
Sbjct: 145 QTAAVLFEVL 154

Involved in callose synthesis at the forming cell plate during cytokinesis. Not required for callose formation after wounding or pathogen attack. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9LXT9|CALS3_ARATH Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 18/136 (13%)

Query: 3   SETEPAKL--LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           SE  P+ L  + P L+ A+E++   P VAY CR YA E+  R+      +       +L+
Sbjct: 35  SEVVPSSLVEIAPILRVANEVESSNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALL 94

Query: 61  NQLEKDKKSLKLG---PEDSLHLEGFALNVFAK--------ADKQDRAGRADLNTAKTFY 109
            +LE++     +G     D+  ++ F  + + K        ADK DRA        K + 
Sbjct: 95  QRLEREHDPTLMGRVKKSDAREMQSFYQHYYKKYIQALHNAADKADRA-----QLTKAYQ 149

Query: 110 AASIFFEILNQFGALQ 125
            A++ FE+L      Q
Sbjct: 150 TANVLFEVLKAVNLTQ 165

Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
224116398	429	predicted protein [Populus trichocarpa]	0.954	0.983	0.692	1e-162
255580762	422	Protein C6orf55, putative [Ricinus commu	0.943	0.988	0.697	1e-158
449463230	424	PREDICTED: vacuolar protein sorting-asso	0.938	0.978	0.665	1e-154
225460849	426	PREDICTED: vacuolar protein sorting-asso	0.936	0.971	0.674	1e-148
356553537	487	PREDICTED: uncharacterized protein LOC10	0.977	0.887	0.611	1e-146
356501574	467	PREDICTED: uncharacterized protein LOC10	0.972	0.920	0.626	1e-145
357494713	487	Vacuolar protein sorting-associated prot	0.984	0.893	0.610	1e-144
242092906	474	hypothetical protein SORBIDRAFT_10g01181	0.975	0.909	0.554	1e-117
449503221	388	PREDICTED: uncharacterized protein LOC10	0.794	0.904	0.620	1e-116
297799318	421	hydroxyproline-rich glycoprotein family	0.914	0.959	0.569	1e-115

>gi|224116398|ref|XP_002317288.1| predicted protein [Populus trichocarpa] gi|222860353|gb|EEE97900.1| predicted protein [Populus trichocarpa]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 311/449 (69%), Positives = 353/449 (78%), Gaps = 27/449 (6%)

Query: 1   MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           M SE EPAKLLLPYLQRADELQKHE LVAYYCRLYAME+GLRIPQ ERTKTTNSLL+SLM
Sbjct: 1   MGSENEPAKLLLPYLQRADELQKHETLVAYYCRLYAMEKGLRIPQNERTKTTNSLLISLM 60

Query: 61  NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
           NQLEKDKKSL LGPED+L+LEGFALNVF KADKQDRAGRADLNTAKTFYAASIFFEI+ Q
Sbjct: 61  NQLEKDKKSLNLGPEDNLYLEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEIITQ 120

Query: 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTS- 179
           FGALQPDLE+KQKYA WKAADIRKA+KEGRKP PGPP   E+LSIP STP+  Y    + 
Sbjct: 121 FGALQPDLEQKQKYAVWKAADIRKALKEGRKPNPGPPADDENLSIPSSTPSGGYVPSNAR 180

Query: 180 -ETPIKGPGSDSDPSSQFPDRLDHYSANVSPPSP-FPDRL-DHYSANVSPPPQFHDKVSN 236
            E+       +SDPS QF D+++       PPSP F D++ +H+SA+V PP  F+D  SN
Sbjct: 181 PESAASNARPESDPSPQFHDQVNDEPYTNIPPSPLFHDKVNNHHSAHVPPPSLFYDSASN 240

Query: 237 QHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHH 296
           QHS+D PPP     F              +P++GYP+ DFHPPPPA+RSENS Y+QPYHH
Sbjct: 241 QHSTDTPPP----SF--------------YPAAGYPSQDFHPPPPASRSENSAYAQPYHH 282

Query: 297 Q-YSQEPQQHLPHNYPSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQ 355
           Q  SQEPQ HLP NY S E  +Y+YPNFQSYPSF+ESS+PS+PSH+PSYYQGSD  ++PQ
Sbjct: 283 QSNSQEPQPHLPQNYQSHEPSSYSYPNFQSYPSFSESSLPSVPSHHPSYYQGSDSSHTPQ 342

Query: 356 SAVPAPTASYQLTSEYSSSSRNGTISEPP--PAQKYQYDSNYQPPPEKISEAHKAARFAV 413
            A   PT+SY  T +Y+SSS   T S+P    A+ YQYD NYQPPPEKI EAHKAARFAV
Sbjct: 343 PA--PPTSSYSSTPQYASSSIMRTTSDPASTSAKTYQYDINYQPPPEKIVEAHKAARFAV 400

Query: 414 GALAFDDVSVAVDYLKKSLELLTNPSAGQ 442
           GALAFDDVSVAVDYL+KSLELLTNPS GQ
Sbjct: 401 GALAFDDVSVAVDYLRKSLELLTNPSVGQ 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580762|ref|XP_002531202.1| Protein C6orf55, putative [Ricinus communis] gi|223529204|gb|EEF31179.1| Protein C6orf55, putative [Ricinus communis]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 312/447 (69%), Positives = 358/447 (80%), Gaps = 30/447 (6%)

Query: 1   MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           M SE EPAKLLLPYLQRADELQKHEPLV    RLYAME+GL+IPQ ERT+TTNSLLVSLM
Sbjct: 1   MGSENEPAKLLLPYLQRADELQKHEPLVG---RLYAMEKGLKIPQSERTRTTNSLLVSLM 57

Query: 61  NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
           NQLEKDKK+LKLGPED+LH+EGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ
Sbjct: 58  NQLEKDKKTLKLGPEDNLHVEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 117

Query: 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSE 180
           FG LQ DLE+KQ+YA WKAADIRKA+KEGRKP PGPP G EDLSIP S P   YD+GT+E
Sbjct: 118 FGDLQLDLEQKQRYAVWKAADIRKALKEGRKPNPGPPAGDEDLSIPSSAPGNGYDLGTTE 177

Query: 181 TPIKGPGSDSDPSSQFPDRL-DHYSANVSPPSPFPDRLDH-YSANVSPPPQFHDKVSNQH 238
           T    P  +SD +S F D+  DH+S ++ P   F + +++ +SA+++  PQFHD V N H
Sbjct: 178 TVATSPRQESDQNSHFHDQFNDHHSTSIQPSVQFHETVNNQHSAHMASQPQFHDSVDNHH 237

Query: 239 SSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHHQ- 297
            ++IPP  P                 S+ S+GYP HDFHPPPPA+ SE+S YSQPYHHQ 
Sbjct: 238 PANIPPSHP-----------------SYTSAGYPPHDFHPPPPASGSEDSPYSQPYHHQS 280

Query: 298 YSQEPQQHLPHNYPSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSA 357
           YSQEPQQ +  NYPS E P+Y+YPNFQSYPSFTESS+PS+PSH P YYQGSD  Y+PQSA
Sbjct: 281 YSQEPQQPVLRNYPSHEAPSYSYPNFQSYPSFTESSLPSVPSHIP-YYQGSDSSYAPQSA 339

Query: 358 VPAPTASYQLTSEYSSSSRNGTISEPP--PAQKYQYDSNYQPPPEKISEAHKAARFAVGA 415
                ++Y  T++Y+S SRNGT S+P   PAQ YQYDSNYQPPPEKI+EAHKAARFAVGA
Sbjct: 340 ----PSNYPSTAQYTSGSRNGTSSDPAPTPAQTYQYDSNYQPPPEKIAEAHKAARFAVGA 395

Query: 416 LAFDDVSVAVDYLKKSLELLTNPSAGQ 442
           LAFDDVSVAVDYL+KSLELLTNPS+GQ
Sbjct: 396 LAFDDVSVAVDYLRKSLELLTNPSSGQ 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463230|ref|XP_004149337.1| PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog [Cucumis sativus]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 299/449 (66%), Positives = 346/449 (77%), Gaps = 34/449 (7%)

Query: 1   MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           MAS+TEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGL+IP GERTKTTN+LLVSLM
Sbjct: 1   MASDTEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPPGERTKTTNALLVSLM 60

Query: 61  NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
           NQLEKDKKSL LGP+DSLHLEGFALNVFAKADKQD AGRADLNTAKTFYAASIFFEI++Q
Sbjct: 61  NQLEKDKKSLNLGPDDSLHLEGFALNVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQ 120

Query: 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSE 180
           FG LQPDLE+K+KYA WKAADIRKA+KEGRKP PGPP G +DLS+P STP  + D+   E
Sbjct: 121 FGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDDDLSVPSSTPTSANDVRPGE 180

Query: 181 TPIKGPGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQHSS 240
             +    S SD S +  D+ ++   N+ PPS  P   D+ + + SPP +FH++V NQH  
Sbjct: 181 PQVSRTQSQSDLSPRVYDKENNDHTNI-PPS--PQVYDNMNNHTSPPARFHNEVDNQHPP 237

Query: 241 DIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHH--QY 298
           +IP                     S+P++GYP+H+FH PPP N  +NS+Y+QPYHH   Y
Sbjct: 238 NIP---------------------SYPAAGYPSHEFHIPPPRNEQDNSSYTQPYHHIQSY 276

Query: 299 SQEPQQ-HLPHNYPSQE-NPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQS 356
           SQE QQ  LPHNYPS E +P Y+YP+FQSYPSF+ESS+P+ PSHYP+YYQGSD  YS Q 
Sbjct: 277 SQEHQQPPLPHNYPSNETSPNYSYPHFQSYPSFSESSLPAAPSHYPTYYQGSDASYSSQ- 335

Query: 357 AVPAPTASYQLTSEYSSSSRNGTISEP----PPAQKYQYDSNYQPPPEKISEAHKAARFA 412
            V  P ASY   S+Y S+ R  T SEP     PA+ Y YDSNYQP PEKI+EAHKAARFA
Sbjct: 336 -VTPPPASYPSASQYHSNGREETASEPQPTSAPAKSYHYDSNYQPAPEKIAEAHKAARFA 394

Query: 413 VGALAFDDVSVAVDYLKKSLELLTNPSAG 441
           VGALAFDDVSVAV++LKKSLELLTNPSA 
Sbjct: 395 VGALAFDDVSVAVEHLKKSLELLTNPSAN 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460849|ref|XP_002277187.1| PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog [Vitis vinifera]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 306/454 (67%), Positives = 342/454 (75%), Gaps = 40/454 (8%)

Query: 1   MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           MASE EPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGL+IPQGERTKTTNSLL+SLM
Sbjct: 1   MASENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQGERTKTTNSLLISLM 60

Query: 61  NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
            QLEKDKK+LKLGP+D LHLEGFA NVFA+ADKQDRAGRADLNTAKTFYAASIFFEILNQ
Sbjct: 61  KQLEKDKKALKLGPDDHLHLEGFASNVFARADKQDRAGRADLNTAKTFYAASIFFEILNQ 120

Query: 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSE 180
           FG LQPDLE+KQKYAAWKAADIRKA+KEGRKP PGPP    DLS+P ST + +YD+G S+
Sbjct: 121 FGELQPDLEQKQKYAAWKAADIRKALKEGRKPQPGPPVDENDLSLPTSTTSGAYDLGPSQ 180

Query: 181 T-PIKGPGSDSDPSSQFPDRLD-HYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQH 238
           T P   PG +SDPS QF   L   +S N++P               SPPP          
Sbjct: 181 TGPSFNPGPESDPSPQFNGSLSRQHSLNITP---------------SPPP---------- 215

Query: 239 SSDIPPPPPTH------DFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENST-YS 291
           ++  P PPPT+            L  +     S+ S+ YP+HDFHPPPP NRSENS+   
Sbjct: 216 TNITPSPPPTNITPSPPPTSFPPLPPNVPPPPSYRSADYPSHDFHPPPPTNRSENSSYPQ 275

Query: 292 QPYHHQYSQEPQQHLPHNYPSQENP-TYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDI 350
             +   Y QEPQQ LP N PS E P +Y+YPNFQSYPSFTESS+P+ PSHYPSYYQGSD 
Sbjct: 276 PYHPQPYPQEPQQQLPQNCPSHETPSSYSYPNFQSYPSFTESSLPAAPSHYPSYYQGSDA 335

Query: 351 PYSPQSAVPAPTASYQLTSEYSSSSRNGTISEPPP--AQKYQYDSNYQPPPEKISEAHKA 408
            YSPQS   AP +SY   ++Y+SS  N  ISEP P  +Q YQYDSNYQPP EKI+EAHKA
Sbjct: 336 SYSPQS---APVSSYPSAAQYNSSGGNEAISEPAPSSSQTYQYDSNYQPPAEKIAEAHKA 392

Query: 409 ARFAVGALAFDDVSVAVDYLKKSLELLTNPSAGQ 442
           ARFAVGALAFDDVSVAVD+LKKSLELLT PSAGQ
Sbjct: 393 ARFAVGALAFDDVSVAVDFLKKSLELLTKPSAGQ 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553537|ref|XP_003545111.1| PREDICTED: uncharacterized protein LOC100783739 [Glycine max]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 304/497 (61%), Positives = 360/497 (72%), Gaps = 65/497 (13%)

Query: 1   MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           MA+E EPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGL+IPQ ERTKTTN+LLVSLM
Sbjct: 1   MANENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNALLVSLM 60

Query: 61  NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
            QLEKDKKS++LGPED+L+LEGFALNVF KADKQDRAGRADLNTAKTFYAASIFFEILNQ
Sbjct: 61  KQLEKDKKSIQLGPEDNLYLEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120

Query: 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSE 180
           FGA+QPDLE+KQKYA WKAA+IRKA+KEGRKP  GPP G EDLS+P S+ +  YD+GT+E
Sbjct: 121 FGAVQPDLEQKQKYAVWKAAEIRKALKEGRKPTAGPPDGDEDLSVPLSSSSDRYDLGTTE 180

Query: 181 TPIKGPGSDSD------------------PSSQFPDRL-DHYSANVSPPSPFPDRLDH-- 219
           T +  PG +SD                  P+ +F D + D +SA++ P  PF DR+D+  
Sbjct: 181 TTVSSPGPESDSSHSYHSPVNYQNLPSIQPTPKFHDTVNDQHSADIPPSMPFHDRVDNNK 240

Query: 220 -----------YSANVSPPPQFHDKVSNQHSSDIPPPPPTHDFH--PTSLNRSD---SSS 263
                      Y+  V P   +H    +Q   D  PPPP+ D+H  P S +      S  
Sbjct: 241 HSSVVSPSSHSYTLGVYPSQDYHSPPPSQ---DYHPPPPSQDYHSPPPSQDYHHPPPSQD 297

Query: 264 YSHPSSGYPTHDFHPPPPAN----------------RSENSTYSQPYHH-QYSQEPQQHL 306
           Y HP    P+ D+HPPPP+                 RSE S+Y +PY+H QYS E  QHL
Sbjct: 298 YHHPP---PSQDYHPPPPSQDYHPAPPSQDYHPPPARSE-SSYPEPYNHQQYSPENSQHL 353

Query: 307 PHNYPSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTASYQ 366
             NYPS E  +++YP+FQSYPSFTESS+PS+PS+Y +YYQGSD  YS QSA    T ++ 
Sbjct: 354 GPNYPSHETSSFSYPHFQSYPSFTESSLPSVPSNY-TYYQGSDASYSSQSA--PLTTNHS 410

Query: 367 LTSEYSSSSRNGTISEPPP-AQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAV 425
            ++++SS SRNGT+ EP P  Q YQYDS+YQP PEKI+EAHKAARFAVGALAFDDVS+AV
Sbjct: 411 SSAQHSSGSRNGTVVEPKPTTQTYQYDSSYQPAPEKIAEAHKAARFAVGALAFDDVSIAV 470

Query: 426 DYLKKSLELLTNPSAGQ 442
           DYLKKSLELLTNPSAGQ
Sbjct: 471 DYLKKSLELLTNPSAGQ 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501574|ref|XP_003519599.1| PREDICTED: uncharacterized protein LOC100806599 [Glycine max]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 300/479 (62%), Positives = 353/479 (73%), Gaps = 49/479 (10%)

Query: 1   MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           MA+E EPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGL+IPQ ERTKTTN+LLVSLM
Sbjct: 1   MANENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNALLVSLM 60

Query: 61  NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
            QLEKDKKS++LGPED+L+LEGFALNVF KADKQDRAGRADL TAKTFYAASIFFEILNQ
Sbjct: 61  KQLEKDKKSIQLGPEDNLYLEGFALNVFGKADKQDRAGRADLTTAKTFYAASIFFEILNQ 120

Query: 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSE 180
           FGA+QPDLE+KQKYA WKAA+IRKA+KEGRKP  GPP G EDLS+P S+ +  YD+GT+E
Sbjct: 121 FGAVQPDLEQKQKYAVWKAAEIRKALKEGRKPTAGPPDGDEDLSVPLSSSSDRYDLGTTE 180

Query: 181 TPIKGPGSDSDPSSQFPDRLDHYSA-NVSPPSP-FPDRL-DHYSANVSPPPQFHDKVSNQ 237
             +  PG +SD S  + +  ++ +  ++ P +P F D + D +SAN+ P   FHD+V N 
Sbjct: 181 NTVSSPGPESDSSRSYHNPANYQNLPSIHPAAPKFHDTVNDQHSANIPPSMPFHDRVDNN 240

Query: 238 H------------------SSDIPPPPPTHDFH---PTSLNRSDSSSYSH----PSSGY- 271
                              S D   PPP+ D+H   P+    S  SS  +    PS  Y 
Sbjct: 241 KHSSVVSPSSHSFTPGVYPSQDYHSPPPSRDYHSPPPSQDYHSPPSSQDYHPPPPSQDYH 300

Query: 272 --PTHDFHPPPPANRSENSTYSQPYHH-QYSQEPQQHLPHNYPSQENPTYNYPNFQSYPS 328
             P+ D+HPPP   RSE S YS+ Y+H QYS E  QHL  NYPS E  +Y+YP+FQSYPS
Sbjct: 301 PPPSQDYHPPPA--RSEGS-YSELYNHQQYSPENSQHLGPNYPSHETSSYSYPHFQSYPS 357

Query: 329 FTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTASYQLTSEYSS----SSRNGTIS-EP 383
           FTESS+PS+PS+Y ++YQGSD+ YS QSA         LT+ +SS    SSRN T+  +P
Sbjct: 358 FTESSLPSVPSNY-THYQGSDVSYSSQSA--------PLTTNHSSSAQHSSRNETVEPKP 408

Query: 384 PPAQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSAGQ 442
              Q YQYDSNYQP PEKI+EAHKAARFAVGALAFDDVSVAVD+LKKSLELLTNPSAGQ
Sbjct: 409 TTTQAYQYDSNYQPAPEKIAEAHKAARFAVGALAFDDVSVAVDFLKKSLELLTNPSAGQ 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494713|ref|XP_003617645.1| Vacuolar protein sorting-associated protein VTA1-like protein [Medicago truncatula] gi|355518980|gb|AET00604.1| Vacuolar protein sorting-associated protein VTA1-like protein [Medicago truncatula]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/491 (61%), Positives = 355/491 (72%), Gaps = 56/491 (11%)

Query: 3   SETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQ 62
           +E EPAK LLPYLQRADELQKHEPLV+YYCRLYAMERGLRIPQ +RTKTTN+LLVSLM Q
Sbjct: 2   AENEPAKPLLPYLQRADELQKHEPLVSYYCRLYAMERGLRIPQSDRTKTTNALLVSLMKQ 61

Query: 63  LEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFG 122
           LEKDKK LKLGPED+L+LEGFALNVF KADKQDRAGRAD+NTAKTFYAASIFFEILNQFG
Sbjct: 62  LEKDKKGLKLGPEDNLYLEGFALNVFGKADKQDRAGRADVNTAKTFYAASIFFEILNQFG 121

Query: 123 ALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSETP 182
            LQPDLE+KQKYA WKAADIRKA+KEGRKPV GPP G EDLS+  S+P+  YDIGT+ET 
Sbjct: 122 ELQPDLEQKQKYAVWKAADIRKALKEGRKPVAGPPAGDEDLSVLSSSPSNIYDIGTTETS 181

Query: 183 IKGPGSDSDPSSQFPDRLDHYSANVSPPSP-FPDRL-DHYSANVSPPPQFHDKVS-NQH- 238
             G GS+SD +  + + +++ +    PP+P F D L D  SAN+ P  QFHD+V+ N+H 
Sbjct: 182 ASGAGSESDSTHGYHNPVNYQNLPSIPPAPKFNDTLNDQNSANIPPSLQFHDRVNDNKHS 241

Query: 239 ----------------------------------SSDIPPPPPTHDFHPTSLNRSDSSSY 264
                                             S +  PPPP+ D+HP   ++      
Sbjct: 242 SIVSPSSHSYTPGVYPSQDYHPPPSSQDYHHPPPSQEYHPPPPSQDYHPPPPSQDYPPPP 301

Query: 265 SH------PSSGY----PTHDFHPPPPANRSENSTYSQPYHH-QYSQEPQQHLPHNYPSQ 313
           S       PS  Y    P+ D+H PPPA RS+ S+YS+PY+H QYS +  Q+L  NYPS 
Sbjct: 302 SQDYHPPPPSQDYQPPPPSQDYHQPPPA-RSD-SSYSEPYNHQQYSPDQSQNLGPNYPSH 359

Query: 314 EN-PTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTASYQLTSEYS 372
           E  P Y+ P+FQSYPSFTESS+PS+P ++ +YYQG D  YS QSA    T ++ L ++ S
Sbjct: 360 ETPPPYSLPHFQSYPSFTESSLPSVPVNH-TYYQGPDASYSSQSA--PLTTNHSLNTQNS 416

Query: 373 SSSRNGTISEPPPAQ-KYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKS 431
           SSSRNGT+ EP P    YQYDS+YQPPPE+I+EAHKAARFAVGALAFDDVS+AVDYLKKS
Sbjct: 417 SSSRNGTVPEPKPTTPTYQYDSSYQPPPERIAEAHKAARFAVGALAFDDVSIAVDYLKKS 476

Query: 432 LELLTNPSAGQ 442
           LELLTNPS GQ
Sbjct: 477 LELLTNPSVGQ 487

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242092906|ref|XP_002436943.1| hypothetical protein SORBIDRAFT_10g011810 [Sorghum bicolor] gi|241915166|gb|EER88310.1| hypothetical protein SORBIDRAFT_10g011810 [Sorghum bicolor]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 266/480 (55%), Positives = 319/480 (66%), Gaps = 49/480 (10%)

Query: 1   MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           M SE+EPAK LLPYLQRADELQKHEPLV+YYCRLYAME+GLRIPQ ERTKTTNS+L+SLM
Sbjct: 1   MGSESEPAKGLLPYLQRADELQKHEPLVSYYCRLYAMEKGLRIPQKERTKTTNSILISLM 60

Query: 61  NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
           NQLEKDKKSL LGP+D+LHLEGFALNVFAKADKQDRAGRAD+NTAKTFYAASIFFEILNQ
Sbjct: 61  NQLEKDKKSLTLGPDDNLHLEGFALNVFAKADKQDRAGRADINTAKTFYAASIFFEILNQ 120

Query: 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSE 180
           FG LQPD+E+KQKYA WKAA+IRKA+KEGRKP  GPPGG +D   P +T  +S D+G S 
Sbjct: 121 FGELQPDVEQKQKYAIWKAAEIRKALKEGRKPEAGPPGGDKD-EAPVNTTTISQDMGQSP 179

Query: 181 TPIKGPGSDSDPSSQFPD--RLDHYSANVSPPSPFPDRLDHYSANVSPPPQFH------- 231
           +     GS++ P     D  R D +SA V P +  P +   +  N  P  Q         
Sbjct: 180 SFNVHQGSEASPRPVNMDFSRRDSFSA-VQPGNNVPRQSTEF--NDHPSTQLPYSPPPPS 236

Query: 232 -------------------DKVSNQH--SSDIPPPPPTHDFHPTS---LNRSDSSSYSHP 267
                              D  S+ H  S +   PP T   HPT+      S+ S   + 
Sbjct: 237 QSQYPSPSQSYSSPSYQATDYPSDLHTPSPNFSSPPYTSTDHPTNEVHKPPSNYSPPPYT 296

Query: 268 SSGYPTHDFHPPPPANRSENSTYSQPYH-HQYSQEPQQHLPHNYPSQENPT--YNYPNFQ 324
            + +P+ D + P   ++ + S Y Q Y    Y+ +P QH   NY S E P   YNYPNFQ
Sbjct: 297 RTDHPSSDGYNPHSNDKPDVSAYPQAYQPPPYTIDP-QHTSQNYYSTEAPAAPYNYPNFQ 355

Query: 325 SYPSFTESSIPSIPSHYPSYYQGSDIP----YSPQSAVPAPTASYQLTSEYSSSSRNGTI 380
           SYPSF +S+ PS+P+H  S+Y  SD P    Y+P S   APT  Y  T+E S       +
Sbjct: 356 SYPSFQDSTAPSVPTHQSSFYPASDGPAATSYTPASNSSAPT-HYLSTAESSPQLAPPAV 414

Query: 381 SEPPPAQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSA 440
              PPA +Y+YDS+YQP  EKI+EAHKAARFAVGALAFDDVSVAVD+LK++L+LLTNPSA
Sbjct: 415 ---PPASQYKYDSSYQPEVEKIAEAHKAARFAVGALAFDDVSVAVDHLKRALDLLTNPSA 471

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503221|ref|XP_004161894.1| PREDICTED: uncharacterized protein LOC101227209 [Cucumis sativus]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/385 (62%), Positives = 283/385 (73%), Gaps = 34/385 (8%)

Query: 65  KDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGAL 124
           KDKKSL LGP+DSLHLEGFALNVFAKADKQD AGRADLNTAKTFYAASIFFEI++QFG L
Sbjct: 29  KDKKSLNLGPDDSLHLEGFALNVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQFGPL 88

Query: 125 QPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSETPIK 184
           QPDLE+K+KYA WKAADIRKA+KEGRKP PGPP G +DLS+P STP  + D+   E  + 
Sbjct: 89  QPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDDDLSVPSSTPTSANDVRPGEPQVS 148

Query: 185 GPGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQHSSDIPP 244
              S SD S +  D+ ++   N+ PPS  P   D+ + + SPP +FH++V NQH  +IP 
Sbjct: 149 RTQSQSDLSPRVYDKENNDHTNI-PPS--PQVYDNMNNHTSPPARFHNEVDNQHPPNIP- 204

Query: 245 PPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHH--QYSQEP 302
                               S+P++GYP+H+FH PPP N  +NS+Y+QPYHH   YSQE 
Sbjct: 205 --------------------SYPAAGYPSHEFHIPPPRNEQDNSSYTQPYHHIQSYSQEH 244

Query: 303 QQ-HLPHNYPSQE-NPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPA 360
           QQ  LPHNYPS E +P Y+YP+FQSYPSF+ESS+P+ PSHYP+YYQGSD  YS Q  V  
Sbjct: 245 QQPPLPHNYPSNETSPNYSYPHFQSYPSFSESSLPAAPSHYPTYYQGSDASYSSQ--VTP 302

Query: 361 PTASYQLTSEYSSSSRNGTISEP----PPAQKYQYDSNYQPPPEKISEAHKAARFAVGAL 416
           P ASY   S+Y S+ R  T SEP     PA+ Y YDSNYQP PEKI+EAHKAARFAVGAL
Sbjct: 303 PPASYPSASQYHSNGREETASEPQPTSAPAKSYHYDSNYQPAPEKIAEAHKAARFAVGAL 362

Query: 417 AFDDVSVAVDYLKKSLELLTNPSAG 441
           AFDDVSVAV++LKKSLELLTNPSA 
Sbjct: 363 AFDDVSVAVEHLKKSLELLTNPSAN 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799318|ref|XP_002867543.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi|297313379|gb|EFH43802.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/455 (56%), Positives = 308/455 (67%), Gaps = 51/455 (11%)

Query: 1   MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
           M++  EPA+ LLPYLQRADELQKHEPLVAYYCRLYAMERGL+IPQ ERTKTTNS+L+SL+
Sbjct: 1   MSNANEPARALLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNSILMSLI 60

Query: 61  NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
           NQLEKDKKSL L P+D++H+EGFAL+VFAKADKQDRAGRADL TAKTFYAA+IFFEIL+Q
Sbjct: 61  NQLEKDKKSLNLSPDDNMHVEGFALSVFAKADKQDRAGRADLGTAKTFYAATIFFEILSQ 120

Query: 121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGE-DLSIPPSTPAVSYDIGTS 179
           FG + PD+E+KQKYAAWKAADIRKA+KEGRKP PG P   + DLSIP S P+ SYD G S
Sbjct: 121 FGPVPPDIEQKQKYAAWKAADIRKAIKEGRKPTPGDPVDDDNDLSIPSSGPSGSYDHGAS 180

Query: 180 ETPIKG-PGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQH 238
           ++       ++ DPS    D   H+     P  P              PP+FHD  +N +
Sbjct: 181 DSNSSSHHRTEPDPSHDSNDDSSHHHFPEVPQHPL-------------PPRFHDNPTNDY 227

Query: 239 SSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHHQ- 297
             D+                        P S YP++D HPPP      +S Y  PY HQ 
Sbjct: 228 PIDV---------------------PPPPPSSYPSNDLHPPPTG--PSDSPYQHPYSHQP 264

Query: 298 YSQEPQQHL--PHNYPSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPY--S 353
           Y Q+P QH+  P NY + E    + PNFQSYPSF+ESS+PS P HYPS+YQ  + PY  S
Sbjct: 265 YHQDPSQHMPPPQNYSAHEPSPNSLPNFQSYPSFSESSLPSTPPHYPSHYQNPE-PYYSS 323

Query: 354 PQSAVPAPTASYQLTSEYSSSSRNGTIS-------EPPPAQKYQYDSNYQPPPEKISEAH 406
           P SA    + S+         S NG I+        P PAQKY YDS+YQP PEK++EAH
Sbjct: 324 PHSAPAPSSTSFSSAPPPPPYSSNGRINIAPVLDPAPSPAQKYHYDSSYQPGPEKVAEAH 383

Query: 407 KAARFAVGALAFDDVSVAVDYLKKSLELLTNPSAG 441
           KAARFAVGALAFD+VS AV++LKKSLELLTNPSAG
Sbjct: 384 KAARFAVGALAFDEVSTAVEHLKKSLELLTNPSAG 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2116437	421	EXT-like "AT4G26750" [Arabidop	0.719	0.755	0.524	1.7e-75
UNIPROTKB|E1BRP3	307	VTA1 "Uncharacterized protein"	0.314	0.452	0.421	9.4e-36
DICTYBASE|DDB_G0271488	550	vta1 "unknown" [Dictyostelium	0.337	0.270	0.376	5.9e-33
UNIPROTKB|Q9NP79	307	VTA1 "Vacuolar protein sorting	0.477	0.687	0.345	1.3e-32
UNIPROTKB|F1N318	307	VTA1 "Vacuolar protein sorting	0.484	0.697	0.341	1.6e-32
UNIPROTKB|Q32L63	307	VTA1 "Vacuolar protein sorting	0.484	0.697	0.341	4.3e-32
MGI|MGI:1913451	309	Vta1 "Vps20-associated 1 homol	0.479	0.686	0.326	1.4e-31
ZFIN|ZDB-GENE-040426-2154	302	vta1 "Vps20-associated 1 homol	0.459	0.672	0.333	2.2e-25
RGD|1305031	251	Vta1 "Vps20-associated 1 homol	0.328	0.577	0.327	6.6e-20
UNIPROTKB|F1S6Z8	245	VTA1 "Uncharacterized protein"	0.432	0.779	0.334	1.3e-17

TAIR|locus:2116437 EXT-like "AT4G26750" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 181/345 (52%), Positives = 212/345 (61%)

Query:     1 MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLM 60
             M++  EPA+ LLPYLQRADELQKHEPLVAYYCRLYAMERGL+IPQ ERTKTTNS+L+SL+
Sbjct:     1 MSNPNEPARALLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNSILMSLI 60

Query:    61 NQLEKDKKSLKLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
             NQLEKDKKSL L P+D++H+EGFAL+VFAKADKQDRAGRADL TAKTFYAASIFFEIL+Q
Sbjct:    61 NQLEKDKKSLTLSPDDNMHVEGFALSVFAKADKQDRAGRADLGTAKTFYAASIFFEILSQ 120

Query:   121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKXXXXXXXXXE-DLSIPPSTPAVSYDIGTS 179
             FG + PD+E+K KYAAWKAADIRKA+KEGRK         + DLSIP S P+ SYD   S
Sbjct:   121 FGPVPPDIEQKHKYAAWKAADIRKAIKEGRKPTPGDPVDDDTDLSIPSSGPSGSYDHSAS 180

Query:   180 ETPIKGPG-SDSDPSSQFPDRLDHYSANVSPPSPFPDRL-DH----YSANVSPPPQFHDK 233
             +T       ++ DP     D   H+     P  P P R  D+    Y A+V PPP     
Sbjct:   181 DTNTTSHHRTELDPPHDSNDDSSHHQFPEVPQHPLPPRFYDNPTNDYPADVPPPPP-SSY 239

Query:   234 VSNQHSSDIXXXXXTHDFHPTSLNRXXXXXXXXXXXGYPTHDFHPPPPANRS--ENSTYS 291
              SN H         +   HP S                P    H PPP N S  E S  S
Sbjct:   240 PSNDHLPPPTGPSDSPYPHPYSHQPYHQD---------PPK--HMPPPQNYSSHEPSPNS 288

Query:   292 QPYHHQYSQEPQQHLPH---NYPSQ-ENPT--YNYPNFQSYPSFT 330
              P    Y    +  LP    +YPS  +NP   Y+ P+    PS T
Sbjct:   289 LPNFQSYPSFSESSLPSTSPHYPSHYQNPEPYYSSPHSAPAPSST 333

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|E1BRP3 VTA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 9.4e-36, Sum P(3) = 9.4e-36
 Identities = 62/147 (42%), Positives = 85/147 (57%)

Query:     9 KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68
             K +  +L+ A EL K EP+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK
Sbjct:    14 KSIQHHLRTAQELDKREPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSKLMDQLEAMKK 71

Query:    69 SL----KLGPE--DSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFG 122
                    +  E   S H+E +AL +F  AD +DRAG+   N  K+FY AS+  ++L  FG
Sbjct:    72 QFGDNEAITQEIVGSAHVENYALKMFLYADNEDRAGQFHKNMIKSFYTASLLIDVLTVFG 131

Query:   123 ALQPDLEEKQKYAAWKAADIRKAMKEG 149
              L  +  + +KYA WKAA I   +K G
Sbjct:   132 ELSEENVQHRKYARWKAAYIHNCLKNG 158

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0271488 vta1 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 286 (105.7 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
 Identities = 58/154 (37%), Positives = 99/154 (64%)

Query:     1 MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQ--GERTKTTNSLLVS 58
             +AS     K ++PYL+++ +L+KH+ L+AYYCR++A++  + I Q  G      +  +V 
Sbjct:     3 LASLPPALKPIIPYLKQSQQLEKHDLLMAYYCRVHAIQMAMDIKQKMGASGSFLSIPIVK 62

Query:    59 LMNQLEKDKKSL--KLGPEDSL-HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFF 115
             +++Q + DK  L  +L  ED   ++E FA+  F+ AD QDRAG+A+  T+ TFY+A +FF
Sbjct:    63 ILDQGDADKAKLGSRLDEEDEAKYVEAFAMKAFSFADTQDRAGKANKATSTTFYSAFLFF 122

Query:   116 EILNQFGALQPDLEEKQKYAAWKAADIRKAMKEG 149
              +L   G +  +++ K+KYA+W++ DI  A+K G
Sbjct:   123 NVLEHMGEVSEEVKLKKKYASWRSVDINTAIKNG 156

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

UNIPROTKB|Q9NP79 VTA1 "Vacuolar protein sorting-associated protein VTA1 homolog" [Homo sapiens (taxid:9606)]

 Score = 286 (105.7 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 83/240 (34%), Positives = 115/240 (47%)

Query:     9 KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68
             K +  +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK
Sbjct:    15 KSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSKLMDQLEALKK 72

Query:    69 SLKLGPEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
               +LG  +++        HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  
Sbjct:    73 --QLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITV 130

Query:   121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKXXXXXXXXXEDLSIPPSTPAVSYDIGTSE 180
             FG L  +  + +KYA WKA  I   +K G           ED  I  +  A +  + T  
Sbjct:   131 FGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQP 190

Query:   181 TPIKGPGSDS--DPSS---------QFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQ 229
             T    P S S  DPS+         Q P    H  AN   P+  P      S  + P PQ
Sbjct:   191 TQ---PSSSSTYDPSNMPSGNYTGIQIPPGA-HAPANT--PAEVPHSTGVASNTIQPTPQ 244

GO:0015031 "protein transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

UNIPROTKB|F1N318 VTA1 "Vacuolar protein sorting-associated protein VTA1 homolog" [Bos taurus (taxid:9913)]

 Score = 285 (105.4 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 81/237 (34%), Positives = 114/237 (48%)

Query:     9 KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68
             K +  +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK
Sbjct:    15 KSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSRLMDQLEALKK 72

Query:    69 SL----KLGPE--DSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFG 122
              L     +  E   S HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG
Sbjct:    73 QLGDNEAITQEIVGSAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFG 132

Query:   123 ALQPDLEEKQKYAAWKAADIRKAMKEGRKXXXXXXXXXED-LSIPPSTPAVSYDIGTSET 181
              L  +  + +KYA WKA  I   +K G           ED + +  +  A +  + T   
Sbjct:   133 ELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNVDVEENEDAGATSLPTQ-- 190

Query:   182 PIKGPGSDSDPSS---------QFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQ 229
             P++   S  DPS+         Q P    H  AN   P+  P      S  + P PQ
Sbjct:   191 PLQPSSSTYDPSNMPSSSYTGIQIPPGA-HAPANT--PAEVPHSTGVISNTIQPTPQ 244

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q32L63 VTA1 "Vacuolar protein sorting-associated protein VTA1 homolog" [Bos taurus (taxid:9913)]

 Score = 281 (104.0 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 81/237 (34%), Positives = 113/237 (47%)

Query:     9 KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68
             K +  +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK
Sbjct:    15 KSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSRLMDQLEALKK 72

Query:    69 SL----KLGPE--DSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFG 122
              L     +  E   S HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG
Sbjct:    73 QLGDNEAITQEIVGSAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFG 132

Query:   123 ALQPDLEEKQKYAAWKAADIRKAMKEGRKXXXXXXXXXED-LSIPPSTPAVSYDIGTSET 181
              L  +  + +KYA WKA  I   +K G           ED + +     A +  + T   
Sbjct:   133 ELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNVDVEEYEDAGATSLPTQ-- 190

Query:   182 PIKGPGSDSDPSS---------QFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQ 229
             P++   S  DPS+         Q P    H  AN   P+  P      S  + P PQ
Sbjct:   191 PLQPSSSTYDPSNMPSSSYTGIQIPPGA-HAPANT--PAEVPHSTGVTSNTIQPTPQ 244

GO:0010008 "endosome membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1913451 Vta1 "Vps20-associated 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 281 (104.0 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
 Identities = 78/239 (32%), Positives = 115/239 (48%)

Query:     9 KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68
             K +  +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK
Sbjct:    15 KSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSKLMDQLEALKK 72

Query:    69 SLKLGPEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
               +LG  +++        HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  
Sbjct:    73 --QLGDNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITV 130

Query:   121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRKXXXXXXXXXEDLSIPPSTPAVSYDIGTSE 180
             FG L  +  + +KYA WKA  I   +K G           E+  +  +      D+G + 
Sbjct:   131 FGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEENDVEENE-----DVGATS 185

Query:   181 TPIKGPGSDS----DPSSQFPDRLD--HYSANVSPPSPFPDRLDH---YSAN-VSPPPQ 229
              P + P   S    DPS+  P              P+  P  + H    ++N V P PQ
Sbjct:   186 LPTQPPQPSSSSAYDPSNLAPGSYSGIQIPPGAHAPANTPAEVPHSTGVTSNAVQPSPQ 244

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2154 vta1 "Vps20-associated 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 75/225 (33%), Positives = 114/225 (50%)

Query:     9 KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68
             K +  YL+ A E +K +P+VAYYCRLYAM+ G+++    +T      LV LM+QLE  KK
Sbjct:     8 KAIQHYLRTAQEHEKRDPVVAYYCRLYAMQTGMKLDS--KTPECRKFLVKLMDQLEMMKK 65

Query:    69 SLKLGPEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQ 120
               +LG  +S+        H+E +AL +F  AD +DR+ R   N  K+FY +S+ F++L+ 
Sbjct:    66 --ELGDNESISQEIVGNAHIENYALKMFLYADNEDRSERFHKNMIKSFYTSSLLFDVLSV 123

Query:   121 FGALQPDLEEKQKYAAWKAADIRKAMKEGRK-----XXXXXXXXXEDLSIPPSTPAVSYD 175
             FG L  +  +++KYA WKAA I   +K G                ++       P+ + D
Sbjct:   124 FGELSEENLQQRKYAKWKAAYIHNCLKNGETPQPGPIGMEGEAYDDEFGAEGGGPSQAPD 183

Query:   176 IGTSETP-IKGPGSDSDPSSQFPD-RL---DHYSANVSPPSPFPD 215
                   P   G  SD  P+S F + ++    H  AN     P P+
Sbjct:   184 NPPHSQPSFHGHPSDQPPTSNFSNIQIPPGSHAPANTPAEIPHPE 228

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1305031 Vta1 "Vps20-associated 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
 Identities = 53/162 (32%), Positives = 75/162 (46%)

Query:    79 HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWK 138
             HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG L  +  + +KYA WK
Sbjct:    31 HLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWK 90

Query:   139 AADIRKAMKEGRKXXXXXXXXXEDLSIPPSTPAVSYDIGTSETPIKGPGSDSDPSSQFPD 198
             A  I   +K G           ED  +  +      D+G +  P + P   S  S+  P 
Sbjct:    91 ATYIHNCLKNGETPQAGPVGIEEDNDVEENE-----DVGATSLPTQPP-QPSSSSTYDPS 144

Query:   199 RL--DHYSANVSPP---SPF--PDRLDH---YSAN-VSPPPQ 229
              L    YS    PP   +P   P  + H    ++N V P PQ
Sbjct:   145 NLAAGSYSGIQIPPGAHAPANTPAEVPHSTGVTSNAVQPSPQ 186

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|F1S6Z8 VTA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 219 (82.2 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 70/209 (33%), Positives = 93/209 (44%)

Query:    33 RLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSL----KLGPE--DSLHLEGFALN 86
             RLYAM+ G++I    +T      L  LM+QLE  KK L     +  E   S HLE +AL 
Sbjct:     1 RLYAMQTGMKIDS--KTPECRKFLSKLMDQLEALKKQLGDNEAVTQEIVGSAHLENYALK 58

Query:    87 VFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAM 146
             +F  AD +DRAGR   N  K+FY AS+  +++  FG L  +  + +KYA WKA  I   +
Sbjct:    59 MFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCL 118

Query:   147 KEGRKXXXXXXXXXEDLSIPPSTPAVSYDIGTSET-PIKG---PG---SDSDPSSQFPDR 199
             K G           ED  I  +  A +  + T    P      PG   S S    Q P  
Sbjct:   119 KNGETPQAGPVGIEEDNDIEENEDAGATSLPTQPPQPSSSTYDPGNMPSSSYTGIQIPPG 178

Query:   200 LDHYSANVSPPSPFPDRLDHYSANVSPPP 228
               H  AN   P+  P      S  + P P
Sbjct:   179 A-HAPANT--PAEVPHSTGVTSNTIQPTP 204

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-68
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-12

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score =  219 bits (561), Expect = 2e-68
 Identities = 110/307 (35%), Positives = 141/307 (45%), Gaps = 38/307 (12%)

Query: 9   KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKK 68
           K + PYL+RA EL+K +P+VAYYCRLYA++  L+I    +       L  L++QLE  KK
Sbjct: 1   KSIQPYLKRAQELEKADPVVAYYCRLYAVQLILKIKL--KDGEVTKFLTKLLDQLEAFKK 58

Query: 69  SL------KLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFG 122
            L              ++E FAL +F +ADKQDRAGRA  NTAKTFYAAS FFE+L  FG
Sbjct: 59  ELGDNDAITDEVAAQAYVENFALKLFNRADKQDRAGRATKNTAKTFYAASTFFEVLAIFG 118

Query: 123 ALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGEDLSIPPSTPAVSYDIGTSETP 182
            L  ++ +K KYA WKAA I KA+KEG  P PGPP   ED     +T           + 
Sbjct: 119 ELDEEVAQKIKYAKWKAARIHKALKEGEDPNPGPPLDEEDEDADVATT---------NSD 169

Query: 183 IKGPGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDKVSNQHSSDI 242
              PG D+DP+S  P      S  V      P   D  S + S  P              
Sbjct: 170 NSFPGEDADPASASPSDPPSSSPGVPSFPSPP--EDPSSPSDSSLP-------------- 213

Query: 243 PPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHHQYSQEP 302
           P P       P     S ++    P    P     PPPP  +    + ++P     S  P
Sbjct: 214 PAPSSFQSDTPPPSPESPTNPSPPPGPAAP-----PPPPVQQVPPLSTAKPTPPSASATP 268

Query: 303 QQHLPHN 309
                  
Sbjct: 269 APIGGIT 275

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 311 PSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSP-----QSAVPAPTASY 365
               + +   P+F S P    S   S     PS +Q    P SP      S  P P A  
Sbjct: 185 SDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPP 244

Query: 366 QLTSEYSSSSRNGTISEPPPAQKYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAV 425
               +          + P  +             + I++A K A++A+ AL F+DV  AV
Sbjct: 245 PPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDAIAKAQKHAKWAISALNFEDVPTAV 304

Query: 426 DYLKKSLELLT 436
             L+K+L+LL 
Sbjct: 305 KELRKALKLLG 315

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
KOG0917	338	consensus Uncharacterized conserved protein [Funct	100.0
PF04652	380	DUF605: Vta1 like; InterPro: IPR006745 This family	100.0
KOG0916	1679	consensus 1,3-beta-glucan synthase/callose synthas	96.13

>KOG0917 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.2e-82  Score=614.35  Aligned_cols=325  Identities=38%  Similarity=0.584  Sum_probs=266.4

Q ss_pred             CCCCCcchhhhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhc------ccCCh
Q 013480            1 MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKS------LKLGP   74 (442)
Q Consensus         1 m~s~~~P~K~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~------l~dd~   74 (442)
                      |.++++|...|++|||||+|++++||||||||||||||.|||++.  .+.|||+||..|||+||++|++      |++++
T Consensus         1 m~~p~~pa~si~~~l~~a~e~~k~dpvvayycrlyamq~gmKid~--qT~e~rk~lsgLm~~lealkkqlaDneaitne~   78 (338)
T KOG0917|consen    1 MPLPPLPAQSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--QTPECRKFLSGLMDQLEALKKQLADNEAITNEI   78 (338)
T ss_pred             CCCCCCChHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcccCCc--cCHHHHHHHHHHHHHHHHHHHHhcchhhhhhch
Confidence            889999999999999999999999999999999999999999985  6699999999999999987664      55678


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhHHHHHHHHHcCCCCCC
Q 013480           75 EDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVP  154 (442)
Q Consensus        75 ~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKAa~I~KaLKeGe~P~P  154 (442)
                      ++++|||+||||||++||++||+|+++|+++|+||+|++|||||.+||||++|+.+++|||||||++|+||||+||+|+|
T Consensus        79 ~aqaHiE~fAlklF~~ADKqdragr~dk~vvkaFYtA~~~~dILs~FGel~e~~l~~rKYAkWKat~I~~clk~G~~p~P  158 (338)
T KOG0917|consen   79 VAQAHIENFALKLFLYADKQDRAGRFDKNVVKAFYTASLLIDILSVFGELTEENLKHRKYAKWKATYIHNCLKNGETPQP  158 (338)
T ss_pred             HHHHHHHHHHHHHHHhhchhhhhcccchhHHHHHHHHHHHHHHHHHhcCCChHHHhhhHHhHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 013480          155 GPPGGGED-LSIPPSTPAVSYDIGTSETPIKGPGSDSDPSSQFPDRLDHYSANVSPPSPFPDRLDHYSANVSPPPQFHDK  233 (442)
Q Consensus       155 gpp~~ee~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (442)
                      |+.++|++ ..|+    ..                                      +                      
T Consensus       159 g~~~deD~d~di~----~~--------------------------------------~----------------------  174 (338)
T KOG0917|consen  159 GPVGDEDDDNDIE----EN--------------------------------------E----------------------  174 (338)
T ss_pred             CCCCCcccccccC----cc--------------------------------------c----------------------
Confidence            99888874 3333    00                                      0                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--CCCCC
Q 013480          234 VSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHHQ-YSQEPQQH--LPHNY  310 (442)
Q Consensus       234 ~~~~~~~~~~sp~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~p~~~--~~~~~  310 (442)
                                                           +.+++..|+  ..++....|++||.++ |.|+|-++  ..++|
T Consensus       175 -------------------------------------~~s~d~~P~--~tGp~~~syp~Py~p~p~~q~p~p~~p~~~~y  215 (338)
T KOG0917|consen  175 -------------------------------------DASADSLPT--QTGPTQPSYPSPYDPSPYHQDPMPSGPYTGIY  215 (338)
T ss_pred             -------------------------------------cccCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcce
Confidence                                                 000111111  2233334467777777 77766555  55679


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 013480          311 PSQENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSP-QSAVP--APTASYQLTSEYSSSSRNGTISEPPPAQ  387 (442)
Q Consensus       311 ~~~~~~~~~~p~fqs~p~f~~~~~p~~~~~~p~~~~~~~~~~~~-~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (442)
                      .+|++++.++|  |+||+|.+++|||.|++++..+..+...+++ ..+|.  +.++..|.+..+....+ ...      +
T Consensus       216 iS~~~S~ns~~--qs~~s~s~s~~~S~pP~~pa~~nnP~p~ySst~~ap~ps~f~~~~P~~qP~~a~d~-~~~------q  286 (338)
T KOG0917|consen  216 ISHEPSPNSLP--QSYPSFSESSLPSTPPGAPAPANNPAPVYSSTGVAPNPSTFFTIQPTPQPIPAIDP-ALF------Q  286 (338)
T ss_pred             eecccCccccc--ccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc-ccc------c
Confidence            99999999999  8999999999999999999999998887665 33332  22222222222222221 100      0


Q ss_pred             ccccCCCCCCChhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhcCCCC
Q 013480          388 KYQYDSNYQPPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTNPSA  440 (442)
Q Consensus       388 ~~~~~~~~~~~~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~~~~~  440 (442)
                      .+. +..|||++|+++||||+||||+|||+||||+|||++|+|||+||+++|+
T Consensus       287 PV~-~~g~qptpE~faea~K~~kyA~sAl~yedVstavenL~KaL~lLt~~s~  338 (338)
T KOG0917|consen  287 PVS-QGGVQPTPEDFAEAQKYCKYAGSALQYEDVSTAVENLQKALKLLTTGSE  338 (338)
T ss_pred             ccc-CCCCccCHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhhcCCC
Confidence            011 7899999999999999999999999999999999999999999999874

>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised

Probab=100.00  E-value=1e-71  Score=557.90  Aligned_cols=154  Identities=54%  Similarity=0.862  Sum_probs=124.5

Q ss_pred             hhhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhccc------CChhHHHHHHH
Q 013480            9 KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLK------LGPEDSLHLEG   82 (442)
Q Consensus         9 K~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l~------dd~~a~ayVEn   82 (442)
                      |.|.|||+||+||++++|||||||||||||+||+++.  +++||+.||+.|||+||++|+++.      |+.++++|||+
T Consensus         1 k~i~~~l~~a~e~~~~~p~v~Y~c~~ya~~~~l~~~~--~~~e~~~~~~~Ll~~lE~~K~~~~~~~~~~~~~~~~~~v~~   78 (380)
T PF04652_consen    1 KSISPFLKRAQELEKRDPVVAYYCRLYAVEQILKLKL--RSKECRQFLTSLLDKLEKMKAELGDNEAILDDVAAQAYVEN   78 (380)
T ss_dssp             --HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHTT-TT----HHHHHHHHHHHHHHHHHHHCT---CHHC-HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhhcCCEEhHHHHHHHHHHHcCCCC--CChhHHHHHHHHHHHHHHhhhccCcHHhhcCHHHHHHHHHH
Confidence            7899999999999999999999999999999999876  889999999999999999998776      66789999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhHHHHHHHHHcCCCCCCCCCCCCCC
Q 013480           83 FALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPVPGPPGGGED  162 (442)
Q Consensus        83 FALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKAa~I~KaLKeGe~P~Pgpp~~ee~  162 (442)
                      |||+||++||++||+|++|++|+|+||||++|||||++||+|++|+++|+|||||||+||+||||+|++|++|++.++|+
T Consensus        79 fa~~~f~~a~~~~~~~~~~~~~~~~f~~a~~~~~~l~~f~~~~~~~~~k~kyak~~a~~i~k~~~~g~~p~~~~~~~~~~  158 (380)
T PF04652_consen   79 FALKLFNRADKEDRAGRATKQTAKTFYAASTFFEVLNIFGELDEEIEEKIKYAKWKAARIAKALKEGEDPNPGPPLEEEE  158 (380)
T ss_dssp             HHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS----------------
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhCCCChHHhhceeeeeeeHhhhHHHHHCCCCCCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             CC
Q 013480          163 LS  164 (442)
Q Consensus       163 ~~  164 (442)
                      ..
T Consensus       159 ~~  160 (380)
T PF04652_consen  159 ED  160 (380)
T ss_dssp             --
T ss_pred             cc
Confidence            44

; PDB: 2RKK_B 2RKL_B 3MHV_A.

>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]

Probab=96.13  E-value=0.0036  Score=73.51  Aligned_cols=56  Identities=25%  Similarity=0.425  Sum_probs=49.5

Q ss_pred             hhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhh
Q 013480           10 LLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDK   67 (442)
Q Consensus        10 ~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~K   67 (442)
                      .|.|+|+.|++++..||.|+|.||.||.++  .+|..++++++++|.+.+|+..+..+
T Consensus        38 ~i~pilr~a~~i~~~~p~~a~l~~~~~~e~--~~D~~s~gr~v~qf~~~~~~~~~~~~   93 (1679)
T KOG0916|consen   38 DIAPILRVANEIEQQNPRVAYLCRFHAFEK--RMDPTSSGRGVRQFKTLDLNSYTSLG   93 (1679)
T ss_pred             ccchhhhccccccccCchhhhccccchHhh--cCCCCCCcchhhhhhhhhccccCccc
Confidence            399999999999999999999999999999  67888899999999999994444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	442
2lxm_A	168	Lip5-chmp5 Length = 168		2e-23
2lxl_A	183	Lip5(mit)2 Length = 183		2e-23

>pdb|2LXM|A Chain A, Lip5-chmp5 Length = 168

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 12/144 (8%)
Query: 14  YLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLG 73
           +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK  +LG
Sbjct: 20  HLRTAQEHDKRDPVVAYYCRLYAMQTGMKID--SKTPECRKFLSKLMDQLEALKK--QLG 75
Query: 74  PEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQ 125
             +++        HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG L 
Sbjct: 76  DNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELT 135
Query: 126 PDLEEKQKYAAWKAADIRKAMKEG 149
            +  + +KYA WKA  I   +K G
Sbjct: 136 DENVKHRKYARWKATYIHNCLKNG 159

>pdb|2LXL|A Chain A, Lip5(mit)2 Length = 183

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 12/144 (8%)
Query: 14  YLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLKLG 73
           +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK  +LG
Sbjct: 20  HLRTAQEHDKRDPVVAYYCRLYAMQTGMKID--SKTPECRKFLSKLMDQLEALKK--QLG 75
Query: 74  PEDSL--------HLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQ 125
             +++        HLE +AL +F  AD +DRAGR   N  K+FY AS+  +++  FG L 
Sbjct: 76  DNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELT 135
Query: 126 PDLEEKQKYAAWKAADIRKAMKEG 149
            +  + +KYA WKA  I   +K G
Sbjct: 136 DENVKHRKYARWKATYIHNCLKNG 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
2rkk_A	168	Vacuolar protein sorting-associated protein VTA1;	2e-43
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-09
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	8e-09
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	6e-06
2rkl_A	53	Vacuolar protein sorting-associated protein VTA1;	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	6e-04

>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae} Length = 168

 Score =  149 bits (377), Expect = 2e-43
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 29/165 (17%)

Query: 8   AKLLLPYLQRADELQKHE-PLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKD 66
           A      +  A +  K    ++ YY +LYA+E  L   + +R++   +L   L++ +E  
Sbjct: 3   ASNAARVVATAKDFDKVGLGIIGYYLQLYAVELILS--EEDRSQEMTALATELLDTIEAF 60

Query: 67  KKSLKLGPED--------------------SLHLEGFALNVFAKADKQDRAGRADLNTAK 106
           KK +    E                      +++  F ++++ +  KQ + G  D+   +
Sbjct: 61  KKEIGGESEAEDSDKSLHVMNTLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKR 120

Query: 107 TFYAASIFFEILNQF------GALQPDLEEKQKYAAWKAADIRKA 145
           + +     F  +               L+++ KY     + + K 
Sbjct: 121 SLWCCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSKLAKG 165

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 60.1 bits (145), Expect = 8e-10
 Identities = 59/260 (22%), Positives = 90/260 (34%), Gaps = 37/260 (14%)

Query: 156  PPGGGEDLSIPPSTPAVSYDIGTSETPIKGPGSDSDPSSQFPDRLDHYSANVSPPSPFPD 215
                 ED      TP       ++E+ +     D      F   +D  S +         
Sbjct: 1458 KITEIEDGQDGGVTP------YSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAY 1511

Query: 216  RLDHYSANVSPPPQFHDKVSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSG--YPT 273
                Y    SP   +               P +  F  +S   S +S    P+S    PT
Sbjct: 1512 GGADYGEATSPFGAY------------GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPT 1559

Query: 274  -HDFHPPPPANRSENSTYSQPYHHQYSQEPQQHLPHNYPSQENPTYNYPNFQSY----PS 328
               + P  P+    + +YS P    YS     + P +           P   SY    PS
Sbjct: 1560 SPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1618

Query: 329  FTESSI---PSIPSHYPS--YYQGSDIPYSPQSAVPAPT-ASYQLTSE-YSSSSRNGTIS 381
            ++ +S    P+ PS+ P+   Y  +   YSP S   +PT  +Y  TS  YS +S + + +
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT 1678

Query: 382  EP---PPAQKYQYDS-NYQP 397
             P   P +  Y   S NY P
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSP 1698

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 59.3 bits (143), Expect = 2e-09
 Identities = 55/236 (23%), Positives = 73/236 (30%), Gaps = 20/236 (8%)

Query: 154  PGPPGGGEDLSIPPSTPAVSYDIGTSETPIKGPGSDSDP-----SSQFPDRLDHYSANVS 208
                GG           A S      E P       S P     S  +      YS    
Sbjct: 1502 DAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSP 1561

Query: 209  PPSPFPDRLDHYSANVSPPPQFHDKVSNQHSSDIPPPPPTH--------DFHPTSLNRSD 260
              SP        S + SP    +   S  +S   P   PT          + PTS + S 
Sbjct: 1562 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621

Query: 261  SS-SYSHPSSGY-PTHDFHPPPPANRSENSTYSQPYHHQYSQEPQQHLPHNYPSQENPTY 318
            +S SYS  S  Y PT   + P   + S  S    P    YS     + P +         
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681

Query: 319  NYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTASYQLTSEYSSS 374
              P   SY   + +  P+ PS     Y  +   YSP S   +P    Q  +E  +S
Sbjct: 1682 YSPTSPSYSPTSPNYSPTSPS-----YSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 11/182 (6%)

Query: 221  SANVSPPPQFHDKVSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHPPP 280
            + +         K     S  +       D           + Y   +S +  +   P  
Sbjct: 1475 NESGLVNADLDVKDELMFSPLVDSGSN--DAMAGGFTAYGGADYGEATSPFGAYGEAPTS 1532

Query: 281  PANRSENSTYS--QPYHHQYSQEPQQHLPHNYPSQENPTYNYPNFQSYPSFTESSIPSIP 338
            P     +  +S   P +   S       P   P+  + +   P++         + PS  
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1592

Query: 339  SHYPSYYQGSDIPYSPQSAVPAPT-ASYQLTS-EYSSSSRNGTISEPPPAQKYQYDSNYQ 396
               PSY   S   YSP S   +PT  SY  TS  YS +S +      P +  Y   S   
Sbjct: 1593 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSY 1647

Query: 397  PP 398
             P
Sbjct: 1648 SP 1649

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 57.0 bits (137), Expect = 8e-09
 Identities = 62/239 (25%), Positives = 86/239 (35%), Gaps = 32/239 (13%)

Query: 154  PGPPGGGEDLSIPPSTPAVSYDIGTSETPIKGPGSDS-DPSSQFPDRLDHYSA---NVSP 209
                 G         +P  +    ++ +P  G  S S  PSS        Y     + SP
Sbjct: 1521 DYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSP 1580

Query: 210  PSPFPDRLDHYSANVSPPPQFHDKVSNQHSSDIPPPPPT--------HDFHPTSLNRSDS 261
             SP        S + SP    +   S  +S+  P   PT          + PTS + S +
Sbjct: 1581 TSP---SYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1637

Query: 262  S-SYSHPSSGY-PTHDFHPPPPANRSENSTYSQPYHHQY---SQEPQQHLPHNYPSQ--- 313
            S SYS  S  Y PT   + P   + S  S    P    Y   S       P   P+    
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697

Query: 314  --ENPTYNYPNFQSYPSFTESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPTA-SYQLTS 369
               +P+Y+ P   SY   + S  P+ PS     Y  +   YSP S   +PT+ SY  TS
Sbjct: 1698 SPTSPSYS-PTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTS 1750

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 51/254 (20%), Positives = 71/254 (27%), Gaps = 37/254 (14%)

Query: 151  KPVPGPPGGGEDLSIPPSTPAVSYDIGTSETPIKGPGSDSDPSSQFPDRLDHYSANVSPP 210
              VP   G G   S  P      Y+             D+   S                
Sbjct: 1463 TAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDY 1522

Query: 211  SPFPDRLDHYSANVSPPPQFHDKVSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSG 270
                             P +    S+  S       P+  + P+S   S S +Y   S  
Sbjct: 1523 GLLGA---ASPYKGVQSPGYTSPFSSAMSPGYGLTSPS--YSPSSPGYSTSPAYMPSSPS 1577

Query: 271  Y-PTHDFHPPPPANRSENSTYSQPYHHQYSQEPQQHLPHNYPSQENPTYNYPNFQSYPSF 329
            Y PT   + P   + S  S    P    YS     + P                 + PS+
Sbjct: 1578 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSP-----------------TSPSY 1620

Query: 330  TESSIPSIPSHYPSYYQGSDIPYSPQSAVPAPT-ASYQLTS-EYSSSSRNGTISEP---P 384
                     S     Y  +   YSP S   +PT  SY  TS  YS +S + + + P   P
Sbjct: 1621 ---------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671

Query: 385  PAQKYQYDSNYQPP 398
             +  Y   S    P
Sbjct: 1672 TSPSYSPTSPSYSP 1685

>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A Length = 53

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 399 PEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLT 436
             KI +  K A++A+ AL ++D+  A D L K+L+LL 
Sbjct: 14  ASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLN 51

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 49/315 (15%), Positives = 76/315 (24%), Gaps = 120/315 (38%)

Query: 49  TKTTNSLLVSLMNQLEKDK------KSLKLGPEDSLHLEG-----FALNVFAKADKQDRA 97
             TT+  L      L  D+      K L   P+D L  E        L++ A    +D  
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIA-ESIRDGL 341

Query: 98  GRAD----LNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKPV 153
              D    +N  K                 L+P  E ++ +                   
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLN------VLEPA-EYRKMF------------------- 375

Query: 154 PGPPGGGEDLSI-PPSTPAVSYDIGTSETPIK------GPGSDSDPSSQFPDRLDHYSAN 206
                  + LS+ PPS       I     P             SD      ++L  YS  
Sbjct: 376 -------DRLSVFPPSAH-----I-----PTILLSLIWFDVIKSDVM-VVVNKLHKYSLV 417

Query: 207 VSPPSPF----PDRLDHYSANVSPPPQFHDKVSNQHSSDIPPPPPTHDFHPTSLNRSDSS 262
              P       P         +      H  + +                          
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDH------------------------- 452

Query: 263 SYSHPSSGYPTHDFHPPPPANRSENSTYSQPYHH-QYSQEPQQHLPHNYPSQENPTYN-- 319
            Y+ P   + + D  PP          Y   Y H  +      HL +    +    +   
Sbjct: 453 -YNIPK-TFDSDDLIPPYLDQ------YF--YSHIGH------HLKNIEHPERMTLFRMV 496

Query: 320 YPNFQSYPSFTESSI 334
           + +F     F E  I
Sbjct: 497 FLDF----RFLEQKI 507

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 18/143 (12%), Positives = 29/143 (20%), Gaps = 9/143 (6%)

Query: 219 HYSANVSPPPQFHDKVSNQHSSDIPPPPPTHDFHPTSLNRSDSSSYSHPSSGYPTHDFHP 278
           H+         F    S Q +S +  P         SL+ S       P   +       
Sbjct: 5   HHHHVDDDDKMF----STQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60

Query: 279 PPPANRSENSTYSQPYHHQYSQEPQQHLPHNYPSQENPTYNYPNFQSYPSFTESSIPSIP 338
            P      N              P        P+    T +          + S     P
Sbjct: 61  SPI-----NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPP 115

Query: 339 SHYPSYYQGSDIPYSPQSAVPAP 361
                  +    P    ++    
Sbjct: 116 LGLNGVLKVPAHPSGNMASFTKH 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
2lxl_A	183	Vacuolar protein sorting-associated protein VTA1;	100.0
2rkk_A	168	Vacuolar protein sorting-associated protein VTA1;	100.0
2rkl_A	53	Vacuolar protein sorting-associated protein VTA1;	99.61

>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A

Probab=100.00  E-value=6.8e-56  Score=411.25  Aligned_cols=160  Identities=42%  Similarity=0.685  Sum_probs=143.5

Q ss_pred             CCCCCcch--hhhHHHHHHHHhhhhcCChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhccc------C
Q 013480            1 MASETEPA--KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSLK------L   72 (442)
Q Consensus         1 m~s~~~P~--K~I~PfLkrA~ELE~~dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l~------d   72 (442)
                      |+++.+|.  |.|.|||+||+||++++|+|||||||||+|+||+++.  +++|+++|++.|||+||++|+++.      +
T Consensus         5 ~~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~--~~~e~~~f~~~LLd~LE~~K~~~~~~dai~~   82 (183)
T 2lxl_A            5 APLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSKLMDQLEALKKQLGDNEAITQ   82 (183)
T ss_dssp             CCCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCS--CCTTHHHHHHHHHHHHHHHHHHHCSCHHHHC
T ss_pred             CCCCCCChhHHhHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhccc--CChhHHHHHHHHHHHHHHHHHhccchhHHhh
Confidence            67888887  6699999999999999999999999999999998864  689999999999999999988764      4


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHhHHHHHHHHHcCCCC
Q 013480           73 GPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYAASIFFEILNQFGALQPDLEEKQKYAAWKAADIRKAMKEGRKP  152 (442)
Q Consensus        73 d~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~aAs~LfEVL~~FGeLddDi~eK~KYAKwKAa~I~KaLKeGe~P  152 (442)
                      +.++++|||+||++||++||++||+|+++++|+|+||||++|||||++||+|++|+++|+|||||||+||+||||+|++|
T Consensus        83 ~~~~~ayve~fAlklF~~Ad~~dRa~~~t~~~~k~F~aA~~f~eVL~~fg~l~~e~~~k~KYAKwkA~~I~kalk~G~~P  162 (183)
T 2lxl_A           83 EIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETP  162 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHCCCCHHHHHhHHHHHHhHHHHHHHHHCCCCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q 013480          153 VPGPPGGGED  162 (442)
Q Consensus       153 ~Pgpp~~ee~  162 (442)
                      +|||++++++
T Consensus       163 ~pgp~~~~~~  172 (183)
T 2lxl_A          163 QAGPVGIEED  172 (183)
T ss_dssp             C---------
T ss_pred             CCCCCCCccc
Confidence            9999988775

>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-44  Score=332.54  Aligned_cols=134  Identities=20%  Similarity=0.323  Sum_probs=125.1

Q ss_pred             hhhHHHHHHHHhhhhc-CChhhHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHhhhhhcc-----------------
Q 013480            9 KLLLPYLQRADELQKH-EPLVAYYCRLYAMERGLRIPQGERTKTTNSLLVSLMNQLEKDKKSL-----------------   70 (442)
Q Consensus         9 K~I~PfLkrA~ELE~~-dPVVAYyCRLYAlE~gLkl~~~srdkE~~~FL~~LLD~LEk~Ke~l-----------------   70 (442)
                      +.|.|||+||+||+++ +|+|||||||||||+||++  +.+++|++.|++.|||+||++|+++                 
T Consensus         4 ~~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~--~~~s~e~~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~~~~   81 (168)
T 2rkk_A            4 SNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSE--EDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMN   81 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHHHHHHTTC-----------CTTTT
T ss_pred             chHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHhccccccccccccchhhhh
Confidence            6799999999999999 9999999999999999987  6789999999999999999998765                 


Q ss_pred             ---cCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH-HHHHHHHHhhhcCCc-----hhHHHHHHHHHHhHHH
Q 013480           71 ---KLGPEDSLHLEGFALNVFAKADKQDRAGRADLNTAKTFYA-ASIFFEILNQFGALQ-----PDLEEKQKYAAWKAAD  141 (442)
Q Consensus        71 ---~dd~~a~ayVEnFALkLFn~AD~qDRaG~~tk~taK~F~a-As~LfEVL~~FGeLd-----dDi~eK~KYAKwKAa~  141 (442)
                         .|+.++++|||+|||+||++||++||+|++|++++|+||| |.+|++||++||+++     +|+++|+|||||||++
T Consensus        82 ~~i~d~~~a~a~ve~FAlklF~~Ad~~drag~~~k~~~k~fy~ta~~F~avl~~fg~~~~~~~~~e~~~k~KYaKw~aa~  161 (168)
T 2rkk_A           82 TLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSK  161 (168)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHH
Confidence               3455689999999999999999999999999999999996 555778999999999     9999999999999999


Q ss_pred             HHH
Q 013480          142 IRK  144 (442)
Q Consensus       142 I~K  144 (442)
                      |+|
T Consensus       162 I~K  164 (168)
T 2rkk_A          162 LAK  164 (168)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            999

>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A

Probab=99.61  E-value=1.6e-16  Score=121.18  Aligned_cols=41  Identities=37%  Similarity=0.606  Sum_probs=39.0

Q ss_pred             CChhhHHHHHHHhhhhhhcccccChHHHHHHHHHHHHHhcC
Q 013480          397 PPPEKISEAHKAARFAVGALAFDDVSVAVDYLKKSLELLTN  437 (442)
Q Consensus       397 ~~~~~i~~a~k~~~~a~~al~~~dv~~a~~~l~~al~ll~~  437 (442)
                      |..++|++||||||||||||+||||.||+++|++||+||++
T Consensus        12 ~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~~   52 (53)
T 2rkl_A           12 DRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLNS   52 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhc
Confidence            56789999999999999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00