Citrus Sinensis ID: 013513

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MKEGEITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESLLNNFSSETGRENHINAKAATS
cccccccccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccEEccccccccEEEEEEccccEEEEcccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEcccEEEcccccccccccccccHHHHHHHHHccccccccccccccccccc
cccccccccccHHHHHHHHHHHHHcccccEEEEEEcccccEEEccEEccccccHHHHHHHcccccccEEEEEccccEEEEEcccccHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHHcccccEccccEEEEHHHHHcccccccccEcccccEEEEEEcEEEccEEccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHccccccccccEcccccccccccccccccEEEEccEEEEcccccccHHHccEEEEcEEEEEEccccEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHccc
mkegeitpgisaEEYISRRKRLLEILPENSVAILAAApekmmtdvvpypyrqdanylyitgcqqpggvavLSHEcglcmfmpetsahdviwkgqiagvdaapetfkadkaypmsKIQEILPdmigrssklfhnQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTmlhskshpyeGLLAAKFEYECKMRgaqrmafnpvvgggpnaAVIHYsrndqkiddgdlvLMDVGCELhgyvsdmtrtwppcgsfssLEEALYDLILQTNKECLelcmpgtsllqiHHYSVGMLRKGLKeigivnsdgtdpynelnptsighylgmdvhdssvvtyerplepgvvitiepgiyiplsfsgperfrgigiriedevlitETGYEVLTGSLPKEIKHIESLLNNfssetgrenhinakaats
mkegeitpgisaeeyISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESLLnnfssetgrenhinakaats
MKEGEITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESLLNNFSSETGRENHINAKAATS
**************YISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESLL********************
***GEITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNL*********GAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESL*********************
MKEGEITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESLLNNFSSETGRENHINAKAATS
*****ITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESLLNNFSS***************
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MKEGEITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESLLNNFSSETGRENHINAKAATS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
Q5R9W8507 Probable Xaa-Pro aminopep yes no 0.963 0.838 0.366 4e-85
Q9NQH7507 Probable Xaa-Pro aminopep yes no 0.963 0.838 0.362 2e-84
B7ZMP1506 Probable Xaa-Pro aminopep yes no 0.963 0.839 0.360 3e-84
B5DEQ3506 Probable Xaa-Pro aminopep yes no 0.963 0.839 0.360 3e-84
Q54T46518 Probable Xaa-Pro aminopep yes no 0.950 0.808 0.372 1e-75
P44881430 Xaa-Pro aminopeptidase OS yes no 0.922 0.946 0.332 2e-69
Q10439486 Intermediate cleaving pep yes no 0.936 0.849 0.343 2e-69
P40051511 Intermediate cleaving pep yes no 0.977 0.843 0.342 4e-69
P15034441 Xaa-Pro aminopeptidase OS N/A no 0.922 0.922 0.354 2e-68
A1CSI0466 Probable Xaa-Pro aminopep N/A no 0.825 0.781 0.295 9e-42
>sp|Q5R9W8|XPP3_PONAB Probable Xaa-Pro aminopeptidase 3 OS=Pongo abelii GN=XPNPEP3 PE=2 SV=1 Back     alignment and function desciption
 Score =  315 bits (808), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 260/450 (57%), Gaps = 25/450 (5%)

Query: 1   MKEGEITPGISAEEYISRRKRLLEILPE--------NSVAILAAAPEKMMTDVVPYPYRQ 52
           ++ GE+TPG+S  EY  RR +L+ ++ +        +   ++ + P   M++ +PY + Q
Sbjct: 58  LRPGEVTPGLSQVEYALRRHKLMSLIQKEAQGQSGTDQTVVVLSNPTYYMSNDIPYTFHQ 117

Query: 53  DANYLYITGCQQPGGVAVLSHECG-------LCMFMPETSAHDVIWKGQIAGVDAAPETF 105
           D N+LY+ G Q+P  + VL    G         +F+P       +W G  +G D A    
Sbjct: 118 DNNFLYLCGFQEPDSILVLQSLPGKQLPSHKAILFVPRRDPSRELWDGPRSGTDGAIALT 177

Query: 106 KADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQ-----KADFYGAVRNLS 160
             D+AY + + Q +LP M   ++ ++++         + +  Q     KA     VR + 
Sbjct: 178 GVDEAYTLEEFQHLLPKMKAETNMVWYDWMRPSHAQLHSDYMQPLTEAKAKSKNKVRGVQ 237

Query: 161 RLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR 220
           +L   LR +KSPAE++ M+ +  +  QA ++TM  SK+   EG L AKFE+EC+ RGA  
Sbjct: 238 QLIQRLRLIKSPAEIERMQIAGKLTSQAFIETMFASKAPVEEGFLYAKFEFECRARGADI 297

Query: 221 MAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLE 280
           +A+ PVV GG  +  +HY +N+Q I DG++VL+D GCE   YVSD+TRTWP  G F++ +
Sbjct: 298 LAYPPVVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQ 357

Query: 281 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVN----SDGTDPYNEL 336
             LY+ IL+  ++CL LC PGTSL  I+   + ++ + LK++GI+     ++      + 
Sbjct: 358 AELYEAILEIQRDCLALCFPGTSLENIYSMMLTLIGQKLKDLGIMKNIKENNAFKAARKY 417

Query: 337 NPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPL-SFSGPERFRGIGIRIEDE 395
            P  +GHYLGMDVHD+  +    PL+PG+VITIEPGIYIP      PE+FRG+G+RIED+
Sbjct: 418 CPHHVGHYLGMDVHDTPDMPRSLPLQPGMVITIEPGIYIPEDDKDAPEKFRGLGVRIEDD 477

Query: 396 VLITETGYEVLTGSLPKEIKHIESLLNNFS 425
           V++T+    +L+   PKE+  IE + +  S
Sbjct: 478 VVVTQDSPLILSADCPKEMNDIEQICSRAS 507

Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 4EC: .EC: 1EC: 1EC: .EC: 9
>sp|Q9NQH7|XPP3_HUMAN Probable Xaa-Pro aminopeptidase 3 OS=Homo sapiens GN=XPNPEP3 PE=1 SV=1 Back     alignment and function description
>sp|B7ZMP1|XPP3_MOUSE Probable Xaa-Pro aminopeptidase 3 OS=Mus musculus GN=Xpnpep3 PE=2 SV=1 Back     alignment and function description
>sp|B5DEQ3|XPP3_RAT Probable Xaa-Pro aminopeptidase 3 OS=Rattus norvegicus GN=Xpnpep3 PE=1 SV=1 Back     alignment and function description
>sp|Q54T46|XPP3_DICDI Probable Xaa-Pro aminopeptidase 3 OS=Dictyostelium discoideum GN=xpnpep3 PE=2 SV=1 Back     alignment and function description
>sp|P44881|AMPP_HAEIN Xaa-Pro aminopeptidase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pepP PE=3 SV=1 Back     alignment and function description
>sp|Q10439|ICP55_SCHPO Intermediate cleaving peptidase 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=icp55 PE=3 SV=2 Back     alignment and function description
>sp|P40051|ICP55_YEAST Intermediate cleaving peptidase 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ICP55 PE=1 SV=1 Back     alignment and function description
>sp|P15034|AMPP_ECOLI Xaa-Pro aminopeptidase OS=Escherichia coli (strain K12) GN=pepP PE=1 SV=2 Back     alignment and function description
>sp|A1CSI0|AMPP3_ASPCL Probable Xaa-Pro aminopeptidase pepP OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=pepP PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
224124998484 predicted protein [Populus trichocarpa] 1.0 0.911 0.741 0.0
225450545486 PREDICTED: probable Xaa-Pro aminopeptida 0.997 0.905 0.735 0.0
255542934487 xaa-pro dipeptidase, putative [Ricinus c 1.0 0.905 0.736 0.0
356533531462 PREDICTED: probable Xaa-Pro aminopeptida 0.961 0.917 0.745 0.0
356575333479 PREDICTED: probable Xaa-Pro aminopeptida 0.986 0.908 0.728 0.0
449453996483 PREDICTED: probable Xaa-Pro aminopeptida 0.961 0.877 0.714 0.0
449490802483 PREDICTED: LOW QUALITY PROTEIN: probable 0.961 0.877 0.714 0.0
30681070493 metallopeptidase M24-like protein [Arabi 0.954 0.853 0.721 0.0
26450001480 unknown protein [Arabidopsis thaliana] 0.954 0.877 0.721 0.0
297843720480 hypothetical protein ARALYDRAFT_471021 [ 0.954 0.877 0.718 0.0
>gi|224124998|ref|XP_002319477.1| predicted protein [Populus trichocarpa] gi|222857853|gb|EEE95400.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/441 (74%), Positives = 384/441 (87%)

Query: 1   MKEGEITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYIT 60
           +KEGEITPGI+ EEYISRRKRLLE+LPE S+AI+AAAP KMMTDVVPY +RQDA+YLYIT
Sbjct: 44  LKEGEITPGITTEEYISRRKRLLELLPEKSLAIIAAAPMKMMTDVVPYTFRQDADYLYIT 103

Query: 61  GCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEIL 120
           GCQQPGGVAVL HECGLCMFMPE + HDVIW+G++AGV+AA E+FKA+KA+P+SK+++IL
Sbjct: 104 GCQQPGGVAVLGHECGLCMFMPEATRHDVIWQGEVAGVEAALESFKAEKAHPLSKLRDIL 163

Query: 121 PDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRE 180
           P MI  SSKLFHN +TA   YT L+ FQ+A   G V++LS  THELRW+KSPAELKLM+E
Sbjct: 164 PGMIRGSSKLFHNMQTATPMYTELDDFQRAALTGKVKDLSNFTHELRWIKSPAELKLMKE 223

Query: 181 SASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSR 240
           +ASI CQ LLQTMLHSK +P+EG+LAAK EYE KMRGAQRMAFNPVVGGG N +VIHYSR
Sbjct: 224 AASIVCQGLLQTMLHSKMYPHEGMLAAKIEYESKMRGAQRMAFNPVVGGGSNGSVIHYSR 283

Query: 241 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMP 300
           NDQKI +GDLVLMDVGCELHGYVSD+TRTWPPCGSFSS+ E LY+L+L+TNKE ++LC P
Sbjct: 284 NDQKIKNGDLVLMDVGCELHGYVSDLTRTWPPCGSFSSVHEELYNLVLETNKESMKLCRP 343

Query: 301 GTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERP 360
           G SL QIH+YSV ML KG KEIGI+   G++ Y++LNPTSIGHYLGMDVHDSS ++Y+R 
Sbjct: 344 GVSLRQIHNYSVEMLCKGFKEIGILKGSGSNSYHQLNPTSIGHYLGMDVHDSSNISYDRL 403

Query: 361 LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESL 420
           L+PGVVITIEPG+YIP  F GP+R+RGIGIRIEDEVLITETGYEVLTGS+PKE+KHIESL
Sbjct: 404 LKPGVVITIEPGVYIPSIFDGPDRYRGIGIRIEDEVLITETGYEVLTGSMPKEVKHIESL 463

Query: 421 LNNFSSETGRENHINAKAATS 441
           LNN+S   G E   N +AA+S
Sbjct: 464 LNNYSCGNGMEAQNNLEAASS 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225450545|ref|XP_002281646.1| PREDICTED: probable Xaa-Pro aminopeptidase 3 [Vitis vinifera] gi|296089797|emb|CBI39616.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255542934|ref|XP_002512530.1| xaa-pro dipeptidase, putative [Ricinus communis] gi|223548491|gb|EEF49982.1| xaa-pro dipeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356533531|ref|XP_003535317.1| PREDICTED: probable Xaa-Pro aminopeptidase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356575333|ref|XP_003555796.1| PREDICTED: probable Xaa-Pro aminopeptidase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449453996|ref|XP_004144742.1| PREDICTED: probable Xaa-Pro aminopeptidase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449490802|ref|XP_004158711.1| PREDICTED: LOW QUALITY PROTEIN: probable Xaa-Pro aminopeptidase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30681070|ref|NP_172401.2| metallopeptidase M24-like protein [Arabidopsis thaliana] gi|332190305|gb|AEE28426.1| metallopeptidase M24-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26450001|dbj|BAC42121.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297843720|ref|XP_002889741.1| hypothetical protein ARALYDRAFT_471021 [Arabidopsis lyrata subsp. lyrata] gi|297335583|gb|EFH66000.1| hypothetical protein ARALYDRAFT_471021 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2203038493 AT1G09300 [Arabidopsis thalian 0.954 0.853 0.721 3.2e-168
ZFIN|ZDB-GENE-040426-2076510 xpnpep3 "X-prolyl aminopeptida 0.945 0.817 0.380 3.5e-75
UNIPROTKB|E1BNA2507 XPNPEP3 "Uncharacterized prote 0.891 0.775 0.385 4.5e-75
UNIPROTKB|E2RB50507 XPNPEP3 "Uncharacterized prote 0.900 0.783 0.376 1.5e-74
RGD|1589063506 Xpnpep3 "X-prolyl aminopeptida 0.900 0.784 0.369 1.7e-73
UNIPROTKB|G3V9W4506 Xpnpep3 "Probable Xaa-Pro amin 0.900 0.784 0.369 1.7e-73
UNIPROTKB|F1NH26506 XPNPEP3 "Uncharacterized prote 0.891 0.776 0.384 2.8e-73
MGI|MGI:2445217506 Xpnpep3 "X-prolyl aminopeptida 0.900 0.784 0.369 3.6e-73
UNIPROTKB|Q9NQH7507 XPNPEP3 "Probable Xaa-Pro amin 0.900 0.783 0.373 7.5e-73
DICTYBASE|DDB_G0282075518 xpnpep3 "peptidase M24 family 0.950 0.808 0.378 7.7e-71
TAIR|locus:2203038 AT1G09300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1636 (581.0 bits), Expect = 3.2e-168, P = 3.2e-168
 Identities = 305/423 (72%), Positives = 363/423 (85%)

Query:     1 MKEGEITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYIT 60
             M EGE+TPGI  EEYI RRK+L+E+LPENS+AI+++AP KMMTDVVPY +RQDA+YLY+T
Sbjct:    43 MAEGEVTPGIRIEEYIGRRKKLVELLPENSLAIISSAPVKMMTDVVPYTFRQDADYLYLT 102

Query:    61 GCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEIL 120
             GCQQPGGVAVLS E GLCMFMPE++  D+ W+G++AGVDAA E FKAD+AYP+SK+ EIL
Sbjct:   103 GCQQPGGVAVLSDERGLCMFMPESTPKDIAWEGEVAGVDAASEVFKADQAYPISKLPEIL 162

Query:   121 PDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRE 180
              DMI  SSK+FHN ++A Q YTNL+ FQ +   G V+ LS LTHELR +KSPAELKLMRE
Sbjct:   163 SDMIRHSSKVFHNVQSASQRYTNLDDFQNSASLGKVKTLSSLTHELRLIKSPAELKLMRE 222

Query:   181 SASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSR 240
             SASI CQ LL+TMLHSK  P EG+L+A+ EYEC++RGAQRMAFNPVVGGG NA+VIHYSR
Sbjct:   223 SASIACQGLLKTMLHSKGFPDEGILSAQVEYECRVRGAQRMAFNPVVGGGSNASVIHYSR 282

Query:   241 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMP 300
             NDQ+I DGDLVLMD+GCELHGYVSD+TRTWPPCG FSS++E LYDLILQTNKEC++ C P
Sbjct:   283 NDQRIKDGDLVLMDMGCELHGYVSDLTRTWPPCGKFSSVQEELYDLILQTNKECIKQCKP 342

Query:   301 GTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERP 360
             GT++ Q++ YS  +L  GL ++GI+ S     Y++LNPTSIGHYLGMDVHDSS V Y+RP
Sbjct:   343 GTTIRQLNTYSTELLCDGLMKMGILKSRRL--YHQLNPTSIGHYLGMDVHDSSAVGYDRP 400

Query:   361 LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIESL 420
             L+PG VITIEPG+YIP SF  PERF+GIGIRIED+VLITETGYEVLTGS+PKEIKHIE+L
Sbjct:   401 LQPGFVITIEPGVYIPSSFDCPERFQGIGIRIEDDVLITETGYEVLTGSMPKEIKHIETL 460

Query:   421 LNN 423
             LNN
Sbjct:   461 LNN 463
GO:0004177 "aminopeptidase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0008235 "metalloexopeptidase activity" evidence=IEA
GO:0008237 "metallopeptidase activity" evidence=ISS
GO:0009987 "cellular process" evidence=IEA
GO:0030145 "manganese ion binding" evidence=IEA
ZFIN|ZDB-GENE-040426-2076 xpnpep3 "X-prolyl aminopeptidase (aminopeptidase P) 3, putative" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNA2 XPNPEP3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB50 XPNPEP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1589063 Xpnpep3 "X-prolyl aminopeptidase (aminopeptidase P) 3, putative" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9W4 Xpnpep3 "Probable Xaa-Pro aminopeptidase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH26 XPNPEP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2445217 Xpnpep3 "X-prolyl aminopeptidase (aminopeptidase P) 3, putative" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQH7 XPNPEP3 "Probable Xaa-Pro aminopeptidase 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282075 xpnpep3 "peptidase M24 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40051ICP55_YEAST3, ., 4, ., 1, 1, ., 2, 60.34210.97730.8434yesno
Q10439ICP55_SCHPO3, ., 4, ., -, ., -0.34390.93650.8497yesno
Q9NQH7XPP3_HUMAN3, ., 4, ., 1, 1, ., 90.36220.96370.8382yesno
B5DEQ3XPP3_RAT3, ., 4, ., 1, 1, ., 90.36080.96370.8399yesno
B7ZMP1XPP3_MOUSE3, ., 4, ., 1, 1, ., 90.36080.96370.8399yesno
Q5R9W8XPP3_PONAB3, ., 4, ., 1, 1, ., 90.36660.96370.8382yesno
Q54T46XPP3_DICDI3, ., 4, ., 1, 1, ., 90.37210.95010.8088yesno
P44881AMPP_HAEIN3, ., 4, ., 1, 1, ., 90.33250.92290.9465yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.110.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00130062
hypothetical protein (484 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVI.341.1
hypothetical protein (185 aa)
•     • 0.555
gw1.16155.2.1
Predicted protein (206 aa)
      • 0.463
estExt_Genewise1_v1.C_LG_II3255
arginine-tRNA ligase (EC-6.1.1.19) (590 aa)
      • 0.443
rpl22
50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)
      • 0.438
gw1.I.4241.1
hypothetical protein (326 aa)
      • 0.433
fgenesh4_pm.C_LG_IX000007
hypothetical protein (574 aa)
      • 0.432
grail3.2692000301
Predicted protein (389 aa)
•       0.428
eugene3.29520003
annotation not avaliable (742 aa)
      • 0.421
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
      • 0.421
DHQS6
SubName- Full=Putative uncharacterized protein; (375 aa)
•    •• 0.411

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
PRK10879438 PRK10879, PRK10879, proline aminopeptidase P II; P 7e-95
cd01087243 cd01087, Prolidase, Prolidase 3e-93
COG0006384 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid 2e-63
pfam00557208 pfam00557, Peptidase_M24, Metallopeptidase family 1e-52
cd01092208 cd01092, APP-like, Similar to Prolidase and Aminop 3e-45
pfam05195134 pfam05195, AMP_N, Aminopeptidase P, N-terminal dom 3e-43
smart01011135 smart01011, AMP_N, Aminopeptidase P, N-terminal do 3e-37
cd01066207 cd01066, APP_MetAP, A family including aminopeptid 2e-31
PRK09795361 PRK09795, PRK09795, aminopeptidase; Provisional 1e-26
PRK13607443 PRK13607, PRK13607, proline dipeptidase; Provision 2e-24
cd01085224 cd01085, APP, X-Prolyl Aminopeptidase 2 4e-15
TIGR00500247 TIGR00500, met_pdase_I, methionine aminopeptidase, 1e-09
COG0024255 COG0024, Map, Methionine aminopeptidase [Translati 2e-09
PRK14576405 PRK14576, PRK14576, putative endopeptidase; Provis 2e-09
cd01086238 cd01086, MetAP1, Methionine Aminopeptidase 1 5e-09
PRK05716252 PRK05716, PRK05716, methionine aminopeptidase; Val 7e-09
PRK12318291 PRK12318, PRK12318, methionine aminopeptidase; Pro 2e-07
PRK14575406 PRK14575, PRK14575, putative peptidase; Provisiona 2e-06
PRK15173323 PRK15173, PRK15173, peptidase; Provisional 2e-06
PRK12896255 PRK12896, PRK12896, methionine aminopeptidase; Rev 7e-04
TIGR02993391 TIGR02993, ectoine_eutD, ectoine utilization prote 0.003
cd01091243 cd01091, CDC68-like, Related to aminopeptidase P a 0.003
cd01090228 cd01090, Creatinase, Creatine amidinohydrolase 0.004
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional Back     alignment and domain information 
 Score =  292 bits (748), Expect = 7e-95
 Identities = 157/445 (35%), Positives = 242/445 (54%), Gaps = 46/445 (10%)

Query: 10  ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
           ++ +E+  RR+ LL  +   S A++ AAPE   +    YPYRQ++++ Y TG  +P  V 
Sbjct: 1   MTQQEFQRRRQALLAKMQPGSAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVL 60

Query: 70  VLSHECGLCMFMPETSAHDV-----------IWKGQIAGVDAAPETFKADKAYPMSKIQE 118
           VL           +T  H V           IW G+  G DAAPE    D+A P S+I +
Sbjct: 61  VLIKS-------DDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQ 113

Query: 119 ILPDMIGRSSKLFHNQ-ETAVQ---TYTNLEAFQKADFYGAVRNLS---RLT------HE 165
            L  ++     ++H Q E A      ++ LE  +K    G+ +NL+    LT      HE
Sbjct: 114 QLYQLLNGLDVVYHAQGEYAYADEIVFSALEKLRK----GSRQNLTAPATLTDWRPWVHE 169

Query: 166 LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHP--YEGLLAAKFEYECKMRGAQRMAF 223
           +R  KSP E+ ++R +  I   A  + M   K  P  +E  L  +  +E    GA+  ++
Sbjct: 170 MRLFKSPEEIAVLRRAGEISALAHTRAM--EKCRPGMFEYQLEGEIHHEFNRHGARYPSY 227

Query: 224 NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEAL 283
           N +VG G N  ++HY+ N+ ++ DGDLVL+D GCE  GY  D+TRT+P  G F+  +  +
Sbjct: 228 NTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREI 287

Query: 284 YDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNP 338
           YD++L++ +  L L  PGTS+ ++    V ++  GL ++GI+  D       + +     
Sbjct: 288 YDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFM 347

Query: 339 TSIGHYLGMDVHDSSV--VTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEV 396
             + H+LG+DVHD  V      R LEPG+V+T+EPG+YI      PE++RGIGIRIED++
Sbjct: 348 HGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDI 407

Query: 397 LITETGYEVLTGSLPKEIKHIESLL 421
           +ITETG E LT S+ K+   IE+L+
Sbjct: 408 VITETGNENLTASVVKKPDEIEALM 432

Length = 438
>gnl|CDD|238520 cd01087, Prolidase, Prolidase Back     alignment and domain information
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24 Back     alignment and domain information
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain Back     alignment and domain information
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain Back     alignment and domain information
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional Back     alignment and domain information
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2 Back     alignment and domain information
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I Back     alignment and domain information
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1 Back     alignment and domain information
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated Back     alignment and domain information
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional Back     alignment and domain information
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional Back     alignment and domain information
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed Back     alignment and domain information
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD Back     alignment and domain information
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor Back     alignment and domain information
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
PRK10879438 proline aminopeptidase P II; Provisional 100.0
KOG2414488 consensus Putative Xaa-Pro aminopeptidase [Amino a 100.0
TIGR02993391 ectoine_eutD ectoine utilization protein EutD. Mem 100.0
COG0006384 PepP Xaa-Pro aminopeptidase [Amino acid transport 100.0
PRK09795361 aminopeptidase; Provisional 100.0
PRK14575406 putative peptidase; Provisional 100.0
PRK14576405 putative endopeptidase; Provisional 100.0
PRK13607443 proline dipeptidase; Provisional 100.0
KOG2737492 consensus Putative metallopeptidase [General funct 100.0
PRK15173323 peptidase; Provisional 100.0
PRK12897248 methionine aminopeptidase; Reviewed 100.0
PRK07281286 methionine aminopeptidase; Reviewed 100.0
PRK12318291 methionine aminopeptidase; Provisional 100.0
PLN03158396 methionine aminopeptidase; Provisional 100.0
TIGR00500247 met_pdase_I methionine aminopeptidase, type I. Met 100.0
cd01087243 Prolidase Prolidase. E.C. 3.4.13.9. Also known as 100.0
PRK05716252 methionine aminopeptidase; Validated 100.0
cd01090228 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. 100.0
PRK12896255 methionine aminopeptidase; Reviewed 100.0
cd01092208 APP-like Similar to Prolidase and Aminopeptidase P 100.0
cd01086238 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 100.0
cd01091243 CDC68-like Related to aminopeptidase P and aminope 100.0
PF00557207 Peptidase_M24: Metallopeptidase family M24 This Pr 100.0
cd01085224 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also 100.0
cd01066207 APP_MetAP A family including aminopeptidase P, ami 100.0
KOG2738369 consensus Putative methionine aminopeptidase [Post 100.0
cd01089228 PA2G4-like Related to aminopepdidase M, this famil 100.0
COG0024255 Map Methionine aminopeptidase [Translation, riboso 100.0
PTZ00053470 methionine aminopeptidase 2; Provisional 100.0
PRK08671291 methionine aminopeptidase; Provisional 100.0
TIGR00495389 crvDNA_42K 42K curved DNA binding protein. Protein 100.0
TIGR00501295 met_pdase_II methionine aminopeptidase, type II. M 100.0
cd01088291 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 100.0
KOG1189 960 consensus Global transcriptional regulator, cell d 100.0
KOG2413606 consensus Xaa-Pro aminopeptidase [Amino acid trans 99.97
COG5406 1001 Nucleosome binding factor SPN, SPT16 subunit [Tran 99.92
PF05195134 AMP_N: Aminopeptidase P, N-terminal domain; InterP 99.65
KOG2775397 consensus Metallopeptidase [General function predi 99.51
KOG2776398 consensus Metallopeptidase [General function predi 99.39
PF01321132 Creatinase_N: Creatinase/Prolidase N-terminal doma 99.3
PF14826163 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-term 97.58
cd01086238 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 97.38
PLN03158 396 methionine aminopeptidase; Provisional 97.32
PRK05716252 methionine aminopeptidase; Validated 96.96
KOG2738 369 consensus Putative methionine aminopeptidase [Post 96.95
PRK12896255 methionine aminopeptidase; Reviewed 96.74
cd01088 291 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 96.65
cd01066207 APP_MetAP A family including aminopeptidase P, ami 96.24
COG0024255 Map Methionine aminopeptidase [Translation, riboso 96.09
PTZ00053 470 methionine aminopeptidase 2; Provisional 95.58
TIGR00501 295 met_pdase_II methionine aminopeptidase, type II. M 95.57
cd01092208 APP-like Similar to Prolidase and Aminopeptidase P 95.56
TIGR00495 389 crvDNA_42K 42K curved DNA binding protein. Protein 95.54
PRK08671 291 methionine aminopeptidase; Provisional 95.46
cd01090228 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. 95.31
cd01089228 PA2G4-like Related to aminopepdidase M, this famil 95.3
PRK12897248 methionine aminopeptidase; Reviewed 94.85
TIGR00500247 met_pdase_I methionine aminopeptidase, type I. Met 94.77
PF00557207 Peptidase_M24: Metallopeptidase family M24 This Pr 94.75
cd01091243 CDC68-like Related to aminopeptidase P and aminope 94.54
PRK12318291 methionine aminopeptidase; Provisional 94.2
TIGR02993391 ectoine_eutD ectoine utilization protein EutD. Mem 93.96
cd01087 243 Prolidase Prolidase. E.C. 3.4.13.9. Also known as 93.69
KOG2775 397 consensus Metallopeptidase [General function predi 93.26
PRK09795361 aminopeptidase; Provisional 93.19
PRK15173323 peptidase; Provisional 92.95
PRK07281286 methionine aminopeptidase; Reviewed 92.78
PRK14575406 putative peptidase; Provisional 92.54
PRK14576405 putative endopeptidase; Provisional 92.38
COG0006384 PepP Xaa-Pro aminopeptidase [Amino acid transport 90.31
cd01085224 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also 88.36
KOG2413 606 consensus Xaa-Pro aminopeptidase [Amino acid trans 86.2
KOG2776 398 consensus Metallopeptidase [General function predi 83.84
PRK10879 438 proline aminopeptidase P II; Provisional 81.45
>PRK10879 proline aminopeptidase P II; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.9e-76  Score=591.86  Aligned_cols=414  Identities=35%  Similarity=0.625  Sum_probs=369.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEecCCcccccCCCCCCCCCCCceEEEcCCCCCCeEEEEEcCC----ceEEEccCCC
Q 013513           10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHEC----GLCMFMPETS   85 (441)
Q Consensus        10 ~~~~e~~~R~~rl~~~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~n~~yltG~~~~~~~lvv~~~~----~~~l~~~~~~   85 (441)
                      ++.++|..|+++|.+.|.+.++.++.+++..++++|..|+|+|++||+||||+..|++++|+.+++    ..+||+|+.+
T Consensus         1 ~~~~~~~~rR~~l~~~~~~~~~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~ep~~~lv~~~~~~~~~~~~Lf~~~~d   80 (438)
T PRK10879          1 MTQQEFQRRRQALLAKMQPGSAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRD   80 (438)
T ss_pred             CChHHHHHHHHHHHhhCCCCcEEEEeCCCccccCCCCCCCccCCCceeeeeCCCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            467899999999999999988999999999999999999999999999999999999998885533    3789999999


Q ss_pred             cccccccccccCcccccccccCCcCCchhHHHHHHHHhhccCCceeeccccc----ccchhHHHHHHhh-----ccCCce
Q 013513           86 AHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETA----VQTYTNLEAFQKA-----DFYGAV  156 (441)
Q Consensus        86 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~igv~~~~~----~~~~~~~~~l~~~-----~~~~~~  156 (441)
                      ...+.|.+.+.+.+.+...++++.+.+++++.+.|.+++.+...+..+....    ......++.++..     .+...+
T Consensus        81 ~~~e~W~G~~~~~~~a~~~~g~d~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (438)
T PRK10879         81 LTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQQLYQLLNGLDVVYHAQGEYAYADEIVFSALEKLRKGSRQNLTAPATL  160 (438)
T ss_pred             CCccEEcCcCCCHHHHHHHhCCCEEeeHHHHHHHHHHHhcCCceEEecCCccccchhHHHHHHHHHHhhhccccCCcccc
Confidence            9999999999999999989999999999999999998876555566543321    1112223333322     234578


Q ss_pred             eehHHHHhHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCceeeeCCCCCcc
Q 013513          157 RNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVI  236 (441)
Q Consensus       157 ~d~~~~i~~~R~vKs~~Ei~~~r~Aa~i~~~~~~~~~~~~~pG~tE~ei~~~~~~~~~~~G~~~~~~~~~v~~G~~~~~~  236 (441)
                      +|+.+++.++|+|||++||++||+|+++++.++..+++.++||+||.||++.+.+.+.+.|+...+|+++|++|.|++.+
T Consensus       161 ~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~~~~~~iv~~G~na~~~  240 (438)
T PRK10879        161 TDWRPWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYPSYNTIVGSGENGCIL  240 (438)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCCCCCCcEEEEcCccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             CccCCCcccCCCCeEEEEEeeeECCeeeeeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Q 013513          237 HYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLR  316 (441)
Q Consensus       237 h~~~~~~~l~~gd~v~id~g~~~~GY~~d~~Rt~~v~G~~~~~~~~~~~~~~~~~~~~~~~~rpG~~~~~v~~a~~~~~~  316 (441)
                      |+.|++++|++||+|++|+|+.++||++|+||||+++|+++++|+++|++++++++++++++|||+++++|+.++.+++.
T Consensus       241 H~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~  320 (438)
T PRK10879        241 HYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMV  320 (438)
T ss_pred             cCCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCC-----CCCCCCCCCCccccCCCccccCCCCC--CCCCcCCCcEEEeCcceeeCCCCCCCCccceee
Q 013513          317 KGLKEIGIVNSDGT-----DPYNELNPTSIGHYLGMDVHDSSVVT--YERPLEPGVVITIEPGIYIPLSFSGPERFRGIG  389 (441)
Q Consensus       317 ~~~~~~G~~~~~~~-----~~~~~~~~~~~Gh~iGl~~~e~p~~~--~~~~l~~Gmv~~iep~~~~~~~~~~~~~~~~~g  389 (441)
                      +.|.++|+.....+     .++..+++|++||++|+++||.|.+.  ++.+|+|||||+||||+|++....++++|+++|
T Consensus       321 ~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~~~~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~G  400 (438)
T PRK10879        321 SGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIG  400 (438)
T ss_pred             HHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcCCCcCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccE
Confidence            99999998753211     16788999999999999999998764  468999999999999999987666788888899


Q ss_pred             EEEeEeEEEcCCCccccCCCCCCCHHHHHHHHcC
Q 013513          390 IRIEDEVLITETGYEVLTGSLPKEIKHIESLLNN  423 (441)
Q Consensus       390 ~~~ed~vlVte~G~e~Lt~~~p~~~~~i~~~~~~  423 (441)
                      +|+||+|+||++|+|+||..+|+++.+||++|+.
T Consensus       401 iRiED~VlVT~~G~e~LT~~~pk~~~~iE~~m~~  434 (438)
T PRK10879        401 IRIEDDIVITETGNENLTASVVKKPDEIEALMAA  434 (438)
T ss_pred             EEeccEEEECCCcCeEcCccCCCCHHHHHHHHHh
Confidence            9999999999999999998899999999999964

>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02993 ectoine_eutD ectoine utilization protein EutD Back     alignment and domain information
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09795 aminopeptidase; Provisional Back     alignment and domain information
>PRK14575 putative peptidase; Provisional Back     alignment and domain information
>PRK14576 putative endopeptidase; Provisional Back     alignment and domain information
>PRK13607 proline dipeptidase; Provisional Back     alignment and domain information
>KOG2737 consensus Putative metallopeptidase [General function prediction only] Back     alignment and domain information
>PRK15173 peptidase; Provisional Back     alignment and domain information
>PRK12897 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PRK07281 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PRK12318 methionine aminopeptidase; Provisional Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR00500 met_pdase_I methionine aminopeptidase, type I Back     alignment and domain information
>cd01087 Prolidase Prolidase Back     alignment and domain information
>PRK05716 methionine aminopeptidase; Validated Back     alignment and domain information
>cd01090 Creatinase Creatine amidinohydrolase Back     alignment and domain information
>PRK12896 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>cd01086 MetAP1 Methionine Aminopeptidase 1 Back     alignment and domain information
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor Back     alignment and domain information
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd01085 APP X-Prolyl Aminopeptidase 2 Back     alignment and domain information
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 Back     alignment and domain information
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00053 methionine aminopeptidase 2; Provisional Back     alignment and domain information
>PRK08671 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR00495 crvDNA_42K 42K curved DNA binding protein Back     alignment and domain information
>TIGR00501 met_pdase_II methionine aminopeptidase, type II Back     alignment and domain information
>cd01088 MetAP2 Methionine Aminopeptidase 2 Back     alignment and domain information
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2775 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>KOG2776 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3 Back     alignment and domain information
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A Back     alignment and domain information
>cd01086 MetAP1 Methionine Aminopeptidase 1 Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK05716 methionine aminopeptidase; Validated Back     alignment and domain information
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12896 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01088 MetAP2 Methionine Aminopeptidase 2 Back     alignment and domain information
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00053 methionine aminopeptidase 2; Provisional Back     alignment and domain information
>TIGR00501 met_pdase_II methionine aminopeptidase, type II Back     alignment and domain information
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>TIGR00495 crvDNA_42K 42K curved DNA binding protein Back     alignment and domain information
>PRK08671 methionine aminopeptidase; Provisional Back     alignment and domain information
>cd01090 Creatinase Creatine amidinohydrolase Back     alignment and domain information
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 Back     alignment and domain information
>PRK12897 methionine aminopeptidase; Reviewed Back     alignment and domain information
>TIGR00500 met_pdase_I methionine aminopeptidase, type I Back     alignment and domain information
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor Back     alignment and domain information
>PRK12318 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR02993 ectoine_eutD ectoine utilization protein EutD Back     alignment and domain information
>cd01087 Prolidase Prolidase Back     alignment and domain information
>KOG2775 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>PRK09795 aminopeptidase; Provisional Back     alignment and domain information
>PRK15173 peptidase; Provisional Back     alignment and domain information
>PRK07281 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PRK14575 putative peptidase; Provisional Back     alignment and domain information
>PRK14576 putative endopeptidase; Provisional Back     alignment and domain information
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01085 APP X-Prolyl Aminopeptidase 2 Back     alignment and domain information
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2776 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>PRK10879 proline aminopeptidase P II; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
1wl9_A440 Structure Of Aminopeptidase P From E. Coli Length = 8e-70
2bww_A440 His350ala Escherichia Coli Aminopeptidase P Length 1e-69
1jaw_A440 Aminopeptidase P From E. Coli Low Ph Form Length = 1e-69
1m35_A440 Aminopeptidase P From Escherichia Coli Length = 440 2e-69
2v3z_A440 Glu383ala Escherichia Coli Aminopeptidase P In Comp 4e-69
2bwy_A440 Glu383ala Escherichia Coli Aminopeptidase P Length 7e-69
2bws_A440 His243ala Escherichia Coli Aminopeptidase P Length 8e-69
2bwv_A440 His361ala Escherichia Coli Aminopeptidase P Length 8e-69
2bwt_A440 Asp260ala Escherichia Coli Aminopeptidase P Length 1e-68
2bwu_A440 Asp271ala Escherichia Coli Aminopeptidase P Length 1e-68
2bwx_A441 His354ala Escherichia Coli Aminopeptidase P Length 3e-67
3ig4_A427 Structure Of A Putative Aminopeptidase P From Bacil 2e-43
2iw2_A494 Crystal Structure Of Human Prolidase Length = 494 4e-36
1pv9_A348 Prolidase From Pyrococcus Furiosus Length = 348 2e-31
1wy2_A351 Crystal Structure Of The Prolidase From Pyrococcus 1e-30
2zsg_A359 Crystal Structure Of X-Pro Aminopeptidase From Ther 2e-25
3q6d_A356 Xaa-Pro Dipeptidase From Bacillus Anthracis. Length 2e-24
1wn1_A356 Crystal Structure Of Dipeptiase From Pyrococcus Hor 2e-21
4fkc_A377 Recombinant Prolidase From Thermococcus Sibiricus L 4e-20
4ege_A378 Crystal Structure Of Dipeptidase Pepe From Mycobact 3e-14
3rva_A451 Crystal Structure Of Organophosphorus Acid Anhydrol 3e-12
3l24_A517 Crystal Structure Of The Nerve Agent Degrading Orga 1e-08
3ror_A291 Crystal Structure Of C105s Mutant Of Mycobacterium 7e-05
1y1n_A291 Identification Of Sh3 Motif In M. Tuberculosis Meth 9e-05
3pka_A285 M. Tuberculosis Metap With Bengamide Analog Y02, In 9e-05
3iu7_A288 M. Tuberculosis Methionine Aminopeptidase With Mn I 1e-04
3ctz_A623 Structure Of Human Cytosolic X-Prolyl Aminopeptidas 1e-04
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli Length = 440 Back     alignment and structure 
Iteration: 1

 Score =  261 bits (666), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 244/437 (55%), Gaps = 30/437 (6%)
Query: 10  ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
           IS +E+  RR+ L+E +   S A++ AAPE   +    YPYRQ++++ Y TG  +P  V 
Sbjct: 3   ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70  VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
           VL     +H   + +F         IW G+  G DAAPE    D+A   S+I + L  ++
Sbjct: 63  VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
                ++H Q E A   V   + LE  +K    G+ +NL+          + HE+R  KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
           P E+ ++R +  I   A  + M   +   +E  L  +  +E    GA+  ++N +VG G 
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
           N  ++HY+ N+ ++ DGDLVL+D GCE  GY  D+TRT+P  G F+  +  +YD++L++ 
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
           +  L L  PGTS+L++    V ++  GL ++GI+  D       + +       + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
           +DVHD  V   +R   LEPG+V+T+EPG+YI      PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
            LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form Length = 440 Back     alignment and structure
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli Length = 440 Back     alignment and structure
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex With Substrate Length = 440 Back     alignment and structure
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus Anthracis Length = 427 Back     alignment and structure
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase Length = 494 Back     alignment and structure
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus Length = 348 Back     alignment and structure
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus Horikoshii Ot3 Length = 351 Back     alignment and structure
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga Maritima Msb8 Length = 359 Back     alignment and structure
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis. Length = 356 Back     alignment and structure
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii Ot3 Length = 356 Back     alignment and structure
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus Length = 377 Back     alignment and structure
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium Ulcerans Length = 378 Back     alignment and structure
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii Length = 451 Back     alignment and structure
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH Inhibitors Length = 517 Back     alignment and structure
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium Tuberculosis Methionine Aminopeptidase Length = 291 Back     alignment and structure
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine Aminopeptidase Suggests A Mode Of Interaction With The Ribosome Length = 291 Back     alignment and structure
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn Form Length = 285 Back     alignment and structure
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn Inhibitor A02 Length = 288 Back     alignment and structure
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase Length = 623 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 1e-177
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 1e-171
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 1e-141
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 1e-109
3l24_A517 XAA-Pro dipeptidase; PITA-bread, detoxification, h 1e-105
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 9e-63
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 7e-62
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 8e-61
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 2e-60
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 5e-59
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 1e-58
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 7e-58
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 4e-53
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 6e-52
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 9e-40
3ctz_A623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 2e-15
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 5e-10
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 8e-10
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 4e-09
2q8k_A401 Proliferation-associated protein 2G4; EBP1, PA2G4, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 3e-07
1b6a_A478 Methionine aminopeptidase; angiogenesis inhibitor; 4e-07
1xgs_A295 Methionine aminopeptidase; hyperthermophIle; 1.75A 8e-07
2nw5_A360 Methionine aminopeptidase 2; metap2, structural ge 2e-06
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 3e-06
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 6e-06
3mx6_A262 Methionine aminopeptidase; seattle structural geno 8e-06
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 2e-05
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 4e-05
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Length = 440 Back     alignment and structure
 Score =  502 bits (1294), Expect = e-177
 Identities = 147/434 (33%), Positives = 233/434 (53%), Gaps = 20/434 (4%)

Query: 10  ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
           IS +E+  RR+ L+E +   S A++ AAPE   +    YPYRQ++++ Y TG  +P  V 
Sbjct: 3   ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62

Query: 70  VLSHECG----LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIG 125
           VL           +F         IW G+  G DAAPE    D+A   S+I + L  ++ 
Sbjct: 63  VLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLN 122

Query: 126 RSSKLFH----NQETAVQTYTNLEAFQKADFYGA-----VRNLSRLTHELRWVKSPAELK 176
               ++H         V   + LE  +K           + +   + HE+R  KSP E+ 
Sbjct: 123 GLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPEEIA 182

Query: 177 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVI 236
           ++R +  I   A  + M   +   +E  L  +  +E    GA+  ++N +VG G N  ++
Sbjct: 183 VLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCIL 242

Query: 237 HYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLE 296
           HY+ N+ ++ DGDLVL+D GCE  GY  D+TRT+P  G F+  +  +YD++L++ +  L 
Sbjct: 243 HYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLR 302

Query: 297 LCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDP-----YNELNPTSIGHYLGMDVHD 351
           L  PGTS+L++    V ++  GL ++GI+  D  +      +       + H+LG+DVHD
Sbjct: 303 LYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHD 362

Query: 352 SSVVTYE--RPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGS 409
             V   +  R LEPG+V+T+ PG+YI      PE++RGIGIRIED+++ITETG E LT S
Sbjct: 363 VGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTAS 422

Query: 410 LPKEIKHIESLLNN 423
           + K+ + IE+L+  
Sbjct: 423 VVKKPEEIEALMVA 436
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Length = 427 Back     alignment and structure
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Length = 494 Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Length = 451 Back     alignment and structure
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Length = 517 Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Length = 467 Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Length = 356 Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444 Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Length = 359 Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Length = 351 Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Length = 378 Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Length = 356 Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Length = 401 Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Length = 402 Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Length = 470 Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Length = 623 Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Length = 264 Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Length = 262 Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Length = 286 Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Length = 401 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Length = 252 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Length = 295 Back     alignment and structure
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Length = 368 Back     alignment and structure
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Length = 329 Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Length = 262 Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Length = 263 Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 100.0
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 100.0
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 100.0
4fkc_A377 XAA-Pro aminopeptidase; PITA-bread structure, prol 100.0
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 100.0
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 100.0
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 100.0
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 100.0
3l24_A517 XAA-Pro dipeptidase; PITA-bread, detoxification, h 100.0
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 100.0
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 100.0
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 100.0
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 100.0
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 100.0
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 100.0
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 100.0
3ctz_A623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 100.0
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 100.0
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 100.0
4fuk_A337 Methionine aminopeptidase; structural genomics con 100.0
3mx6_A262 Methionine aminopeptidase; seattle structural geno 100.0
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 100.0
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 100.0
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 100.0
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 100.0
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 100.0
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 100.0
2q8k_A401 Proliferation-associated protein 2G4; EBP1, PA2G4, 100.0
1xgs_A295 Methionine aminopeptidase; hyperthermophIle; 1.75A 100.0
1b6a_A478 Methionine aminopeptidase; angiogenesis inhibitor; 100.0
2nw5_A360 Methionine aminopeptidase 2; metap2, structural ge 100.0
3fm3_A358 Methionine aminopeptidase 2; metap2, structural ge 100.0
4b6a_t 614 Probable metalloprotease ARX1; large ribosomal sub 99.64
3i7m_A140 XAA-Pro dipeptidase; structural genomics, APC64794 99.38
3il0_A131 Aminopeptidase P; XAA-Pro aminopeptidase; structur 99.38
3pn9_A138 Proline dipeptidase; structural genomics, PSI-2, p 99.34
3o5v_A132 X-Pro dipeptidase; creatinase, N-terminal, PSI, MC 99.26
3ooo_A132 Proline dipeptidase; structural genomics, PSI-2, p 99.25
3qoc_A135 Putative metallopeptidase; MCSG, PSI-2, structural 99.25
3ovk_A132 Aminopeptidase P, XAA-Pro dipeptidase; structural 99.11
3ctz_A 623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 98.9
3fm3_A 358 Methionine aminopeptidase 2; metap2, structural ge 95.7
4fuk_A 337 Methionine aminopeptidase; structural genomics con 95.5
3tb5_A 264 Methionine aminopeptidase; hydrolase, metalloprote 94.94
1xgs_A 295 Methionine aminopeptidase; hyperthermophIle; 1.75A 94.89
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 94.35
2b3h_A 329 Methionine aminopeptidase 1; hydrolase, metallopro 93.93
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 93.77
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 93.64
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 93.55
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 93.52
3mx6_A262 Methionine aminopeptidase; seattle structural geno 93.33
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 93.18
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 93.17
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 93.15
3s6b_A 368 Methionine aminopeptidase; malaria, proteolysis, " 93.1
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 92.65
2nw5_A 360 Methionine aminopeptidase 2; metap2, structural ge 92.58
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 92.47
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 92.41
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 91.79
4b6a_t 614 Probable metalloprotease ARX1; large ribosomal sub 91.74
4fkc_A377 XAA-Pro aminopeptidase; PITA-bread structure, prol 91.25
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 90.81
2q8k_A401 Proliferation-associated protein 2G4; EBP1, PA2G4, 90.16
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 89.51
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 89.29
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 88.95
1b6a_A478 Methionine aminopeptidase; angiogenesis inhibitor; 88.88
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 81.77
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 80.52
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Back     alignment and structure
Probab=100.00  E-value=8.2e-78  Score=604.30  Aligned_cols=403  Identities=28%  Similarity=0.515  Sum_probs=371.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEecCCcccccCCCCCCCCCCCceEEEcCCCCCCeEEEEEcC---CceEEEccCCCc
Q 013513           10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHE---CGLCMFMPETSA   86 (441)
Q Consensus        10 ~~~~e~~~R~~rl~~~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~n~~yltG~~~~~~~lvv~~~---~~~~l~~~~~~~   86 (441)
                      ++.++|.+|++||.+.|.+.++.++.+++..++++|..|+|+|++||+||||+..|++++++.++   ++.+||+++.+.
T Consensus         1 m~~~~~~~RR~~l~~~l~~~~~~i~~~~~~~~~~~d~~~~frq~s~f~YltG~~~~~~~~v~~~~~~~~~~~lfv~~~~~   80 (427)
T 3ig4_A            1 MKSKFFAQNRERLVNTLPDESITILFAGQAPHMSADAHYKFVPNRNFYYVTGIDEPNVIFMLKKFGNSVEETLFIEKSDP   80 (427)
T ss_dssp             CCHHHHHHHHHHHHTTSCSSEEEEEECCCCCEEETTEECCCCCCHHHHHHHCCCSTTCEEEEEEETTEEEEEEEECCCCT
T ss_pred             CCHHHHHHHHHHHHHhCcCCCEEEEECCCccccCCCCCCcccCCCCeEEeeCCCCCCEEEEEEccCCCceEEEEecCCCc
Confidence            36789999999999999999999999999999999999999999999999999999999998763   368999999999


Q ss_pred             ccccccccccCcccccccccCCcCCchhHHHHHHHHhhcc--CCceeeccccc------ccchhHHHHHHhhccCCceee
Q 013513           87 HDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGR--SSKLFHNQETA------VQTYTNLEAFQKADFYGAVRN  158 (441)
Q Consensus        87 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~igv~~~~~------~~~~~~~~~l~~~~~~~~~~d  158 (441)
                      ..+.|.+.|.+.+.+...++.+.+.+.+++.+.|.+++.+  .++|+++.+..      ..++..++.|++.+|..++++
T Consensus        81 ~~~~w~g~r~~~~~a~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  160 (427)
T 3ig4_A           81 VMEKWVGKTVSNEEAEKISGIKKVIYLDSFEKTMSNIFFTENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGN  160 (427)
T ss_dssp             TGGGTTCCCCCHHHHHHHHCCSEEEEGGGHHHHHHHHHTTTCCCEEEECCCCCCTTCCCCHHHHHHHHHHHHCTTCEEEE
T ss_pred             cceEEeCCCCcHHHHHhcCCCCEEEEhhhHHHHHHHHHhcCCCcEEEEeCCccccccccccCHHHHHHHHhhCCCCeEeE
Confidence            8999999999999888888888888889999889888754  67899875421      234556788899999999999


Q ss_pred             hHHHHhHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCceeeeCCCCCccCc
Q 013513          159 LSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHY  238 (441)
Q Consensus       159 ~~~~i~~~R~vKs~~Ei~~~r~Aa~i~~~~~~~~~~~~~pG~tE~ei~~~~~~~~~~~G~~~~~~~~~v~~G~~~~~~h~  238 (441)
                      +++++..+|+|||++||+.||+|++++++++..+++.++||+||.||++.++..+.++|+.+.+|+++|++|.|++.+|+
T Consensus       161 ~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~el~~~~~~~~~~~G~~~~~f~~ivasG~n~~~~H~  240 (427)
T 3ig4_A          161 VYPNICELRVFKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGIKHHAFNTILASGKNATVLHY  240 (427)
T ss_dssp             CHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEHHHHHHHHHHHHHHTTCCEESSCCEEEEGGGGGSTTC
T ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCCCCCCCEEEECcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             cCCCcccCCCCeEEEEEeeeECCeeeeeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Q 013513          239 SRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKG  318 (441)
Q Consensus       239 ~~~~~~l~~gd~v~id~g~~~~GY~~d~~Rt~~v~G~~~~~~~~~~~~~~~~~~~~~~~~rpG~~~~~v~~a~~~~~~~~  318 (441)
                      .|++++|++||+|++|+|+.|+||++|+||||+|+|+++++|+++|++++++++++++++|||+++.||++++++++.+.
T Consensus       241 ~~~~~~l~~GdlvliD~G~~~~gY~sDitRT~~v~G~~s~~~~~~y~~vl~a~~~~i~~~kpG~~~~di~~~a~~~i~~~  320 (427)
T 3ig4_A          241 EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEG  320 (427)
T ss_dssp             CCCCSEECTTCEEEEEECEEETTEECCEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTCCTTCBTHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCCEEEEEeeeEECcEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             HHhcCcccCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCcCCCcEEEeCcceeeCCCCCCCCccceeeEEEeEeEEE
Q 013513          319 LKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLI  398 (441)
Q Consensus       319 ~~~~G~~~~~~~~~~~~~~~~~~Gh~iGl~~~e~p~~~~~~~l~~Gmv~~iep~~~~~~~~~~~~~~~~~g~~~ed~vlV  398 (441)
                      +.++|+.....  ++..+++|++||++|+++||.|. .++.+|++||||+||||+|+++.        ++|+|+||+|+|
T Consensus       321 ~~~~G~~~~~~--~~~~~~~Hg~GH~iGl~vhe~~~-~~~~~L~~GMV~tiEPgiy~~~~--------g~GvriEd~vlV  389 (427)
T 3ig4_A          321 CKAVGLIQEDE--ELSKYYYHGVSHFLGLDTHDVGT-YKDRVLEEGMVITIEPGLYIEEE--------SIGIRIEDDILV  389 (427)
T ss_dssp             HHHHTSCSSGG--GGGGTCCSCSCCBCSSSSSCCCC-CTTCBCCTTCEEEECCEEEEGGG--------TEEEECBEEEEE
T ss_pred             HhhcCCccCcc--hhhccCCCCCCCcCCcCCCcCCC-CCCCEeCCCCEEEECCEEEECCC--------ceEEEEeeEEEE
Confidence            88899875433  57889999999999999999875 57889999999999999999875        369999999999


Q ss_pred             cCCCccccCCCCCCCHHHHHHHHcC
Q 013513          399 TETGYEVLTGSLPKEIKHIESLLNN  423 (441)
Q Consensus       399 te~G~e~Lt~~~p~~~~~i~~~~~~  423 (441)
                      |++|+|+||..+|+++.+||++|++
T Consensus       390 t~~G~e~LT~~~pk~~~~IE~~m~~  414 (427)
T 3ig4_A          390 TKDGHENLSKDIIREVEEIEEFMRE  414 (427)
T ss_dssp             CSSSEEETTTTSCCSHHHHHHHHHH
T ss_pred             eCCcCeECCCCCCCCHHHHHHHHcc
Confidence            9999999997689999999999974
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Back     alignment and structure
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Back     alignment and structure
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus} Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Back     alignment and structure
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Back     alignment and structure
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei} Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A Back     alignment and structure
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Back     alignment and structure
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Back     alignment and structure
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A* Back     alignment and structure
>4b6a_t Probable metalloprotease ARX1; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis} Back     alignment and structure
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus} Back     alignment and structure
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A* Back     alignment and structure
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics, midwest center for structu genomics, hydrolase; HET: MSE; 2.15A {Corynebacterium diphtheriae} Back     alignment and structure
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes} Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Back     alignment and structure
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A* Back     alignment and structure
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei} Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Back     alignment and structure
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Back     alignment and structure
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Back     alignment and structure
>4b6a_t Probable metalloprotease ARX1; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} Back     alignment and structure
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus} Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Back     alignment and structure
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 441
d2v3za2264 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal 3e-44
d2gg2a1262 d.127.1.1 (A:3-264) Methionine aminopeptidase {Esc 2e-34
d2v3za1176 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia c 1e-32
d1pv9a2221 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal 4e-31
d1chma2246 d.127.1.1 (A:157-402) Creatinase, catalytic (C-ter 1e-30
d1o0xa_249 d.127.1.1 (A:) Methionine aminopeptidase {Thermoto 1e-24
d1xgsa2218 d.127.1.1 (A:1-194,A:272-295) Methionine aminopept 5e-23
d1qxya_249 d.127.1.1 (A:) Methionine aminopeptidase {Staphylo 6e-23
d1b6aa2295 d.127.1.1 (A:110-374,A:449-478) Methionine aminope 9e-20
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 264 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Creatinase/aminopeptidase
superfamily: Creatinase/aminopeptidase
family: Creatinase/aminopeptidase
domain: Aminopeptidase P, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  153 bits (386), Expect = 3e-44
 Identities = 98/258 (37%), Positives = 154/258 (59%), Gaps = 7/258 (2%)

Query: 171 SPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGG 230
           SP E+ ++R +  I   A  + M   +   +E  L  +  +E    GA+  ++N +VG G
Sbjct: 1   SPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSG 60

Query: 231 PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 290
            N  ++HY+ N+ ++ DGDLVL+D GCE  GY  D+TRT+P  G F+  +  +YD++L++
Sbjct: 61  ENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLES 120

Query: 291 NKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYN-----ELNPTSIGHYL 345
            +  L L  PGTS+L++    V ++  GL ++GI+  D  +              + H+L
Sbjct: 121 LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWL 180

Query: 346 GMDVHDSSVV--TYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGY 403
           G+DVHD  V      R LEPG+V+T+ PG+YI      PE++RGIGIRIED+++ITETG 
Sbjct: 181 GLDVHDVGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGN 240

Query: 404 EVLTGSLPKEIKHIESLL 421
           E LT S+ K+ + IE+L+
Sbjct: 241 ENLTASVVKKPEEIEALM 258
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Length = 262 Back     information, alignment and structure
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli [TaxId: 562]} Length = 176 Back     information, alignment and structure
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 221 Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Length = 246 Back     information, alignment and structure
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Length = 249 Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 218 Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Length = 249 Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
d1pv9a2221 Aminopeptidase P, C-terminal domain {Archaeon Pyro 100.0
d2v3za2264 Aminopeptidase P, C-terminal domain {Escherichia c 100.0
d1chma2246 Creatinase, catalytic (C-terminal) domain {Pseudom 100.0
d1qxya_249 Methionine aminopeptidase {Staphylococcus aureus [ 100.0
d1o0xa_249 Methionine aminopeptidase {Thermotoga maritima [Ta 100.0
d2gg2a1262 Methionine aminopeptidase {Escherichia coli [TaxId 100.0
d1xgsa2218 Methionine aminopeptidase {Archaeon Pyrococcus fur 100.0
d1b6aa2295 Methionine aminopeptidase {Human (Homo sapiens) [T 100.0
d2v3za1176 Aminopeptidase P {Escherichia coli [TaxId: 562]} 99.79
d1chma1155 Creatinase {Pseudomonas putida [TaxId: 303]} 99.65
d1kp0a1156 Creatinase {Actinobacillus sp. [TaxId: 41114]} 99.58
d1pv9a1117 Aminopeptidase P {Archaeon Pyrococcus furiosus [Ta 99.03
d1xgsa2218 Methionine aminopeptidase {Archaeon Pyrococcus fur 96.13
d1b6aa2295 Methionine aminopeptidase {Human (Homo sapiens) [T 95.4
d1pv9a2221 Aminopeptidase P, C-terminal domain {Archaeon Pyro 94.87
d2gg2a1262 Methionine aminopeptidase {Escherichia coli [TaxId 94.44
d2v3za2 264 Aminopeptidase P, C-terminal domain {Escherichia c 94.24
d1chma2246 Creatinase, catalytic (C-terminal) domain {Pseudom 93.93
d1qxya_249 Methionine aminopeptidase {Staphylococcus aureus [ 93.33
d1o0xa_249 Methionine aminopeptidase {Thermotoga maritima [Ta 92.13
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Creatinase/aminopeptidase
superfamily: Creatinase/aminopeptidase
family: Creatinase/aminopeptidase
domain: Aminopeptidase P, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.8e-51  Score=378.13  Aligned_cols=219  Identities=34%  Similarity=0.572  Sum_probs=208.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCCCCCCceeeeCCCCCccCccCCCcccCCCC
Q 013513          170 KSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGD  249 (441)
Q Consensus       170 Ks~~Ei~~~r~Aa~i~~~~~~~~~~~~~pG~tE~ei~~~~~~~~~~~G~~~~~~~~~v~~G~~~~~~h~~~~~~~l~~gd  249 (441)
                      |||+||++||+|++++++++..+++.++||+||.||.+.+...+.+.|++...|.+++++|.|+..+|+.|+++++++||
T Consensus         1 Ks~~EI~~mr~a~~i~~~~~~~~~~~i~~G~tE~ei~~~~~~~~~~~G~~~~~~~~~v~~g~~~~~~h~~~~~~~i~~gd   80 (221)
T d1pv9a2           1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGD   80 (221)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHTTCSEESSCCEEEEGGGGGSTTCBCCSCBCCTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             eEEEEEeeeECCeeeeeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcCcccCCC
Q 013513          250 LVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDG  329 (441)
Q Consensus       250 ~v~id~g~~~~GY~~d~~Rt~~v~G~~~~~~~~~~~~~~~~~~~~~~~~rpG~~~~~v~~a~~~~~~~~~~~~G~~~~~~  329 (441)
                      +|++|+|+.++||++|++||+++ |+|+++++++|+++.++++++++++|||++++||++++++.+++    .       
T Consensus        81 ~v~id~~~~~~gy~~d~~Rt~~v-G~~~~~~~~~~~~~~~~~~~~~~~~kpG~~~~~v~~~~~~~~~~----~-------  148 (221)
T d1pv9a2          81 LVVIDLGALYNHYNSDITRTIVV-GSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKE----Y-------  148 (221)
T ss_dssp             EEEEEECEEETTEECCEEEEEES-SSCCHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHH----T-------
T ss_pred             eEEEecccccCccccCcceeeec-CCccHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHhhhhh----c-------
Confidence            99999999999999999999999 99999999999999999999999999999999999999888876    3       


Q ss_pred             CCCCCCCCCCCccccCCCccccCCCCC--CCCCcCCCcEEEeCcceeeCCCCCCCCccceeeEEEeEeEEEcCCCccccC
Q 013513          330 TDPYNELNPTSIGHYLGMDVHDSSVVT--YERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLT  407 (441)
Q Consensus       330 ~~~~~~~~~~~~Gh~iGl~~~e~p~~~--~~~~l~~Gmv~~iep~~~~~~~~~~~~~~~~~g~~~ed~vlVte~G~e~Lt  407 (441)
                        ++..++.|++|||+|+.+||.|.+.  ++.+|++||||+|||++|.++.         +|+++||+|+||++|+|+||
T Consensus       149 --g~~~~~~~~~Ghg~g~~~~e~~~~~~~~~~~L~~gMv~~iep~~~~~~~---------~g~r~Ed~v~Vte~G~e~Lt  217 (221)
T d1pv9a2         149 --GYGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGIYIPKL---------GGVRIEDTVLITENGAKRLT  217 (221)
T ss_dssp             --TCGGGCCSCSEEECSSSSSEEEEESTTCCCBCCTTCEEEECCEEEETTT---------EEEECBEEEEECSSSEEESC
T ss_pred             --ccCCceeccccCCCCcccchhcccccCCCceeCCCcEEEECCEEEECCC---------CEEEEeEEEEECCCcceECC
Confidence              4566778999999999999998765  5789999999999999999987         89999999999999999999


Q ss_pred             CCCCC
Q 013513          408 GSLPK  412 (441)
Q Consensus       408 ~~~p~  412 (441)
                      + +||
T Consensus       218 ~-~pr  221 (221)
T d1pv9a2         218 K-TER  221 (221)
T ss_dssp             C-SCC
T ss_pred             C-CCC
Confidence            8 886
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]} Back     information, alignment and structure
>d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure