Citrus Sinensis ID: 013535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHcccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHccccccccccEEEEEcccccEEEEEEEEcccccHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHccEEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccEEEEEcccccccEEEEEcccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHcccccccccccEEcccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHccccHHccccccccccccccccEEEEEcccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHcccEEEEEccccccccccccccccEEEHHHHHHHHHHHcccEEccc
Coil and Loop (DISEMBL)
MDDEYAKLIrrmnpprvvidnntcadaTVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYissdggwfmdvfnvidcdgkkirDKEVIDYIQQRLetdasfapslrssvgvmpteehtsieftgtdrpglfSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVtdhstgyaikdpkRLSTIKELLFNVLRGYDDfrkaktslsppgimnreRRLHQIMFDDRDYERVEKAVGrvedkssrpqvtvlnIEKDYTVItmrskdrpkLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHvdglpisseAERERVIQCLEAAIERRASeglelelctEDRVGLLSDITRIFRENSLSIKRAEIStiggkvkdTFYVtdvtgnpvdpkiiDSIRRQightklqvkrstilapkppketttgfflgnffkartFQTFKLIRSYS
Flexible Loop (DISEMBL)
MDDEYAKlirrmnpprvvidnnTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYissdggwfmDVFNVIDCDGKKIRDKEVIDYIQQRletdasfapslrSSVGVMPTEEHTSieftgtdrpGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHstgyaikdpkrlsTIKELLFNVLRGYDDfrkaktslsppgimnrerrLHQIMFDDRDYERVEKavgrvedkssrpqvtvlniekdytvitmrskdrpKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERraseglelelctedrvgllsditrifrenslsikraeistiggkvkdtfyvtdvtgnpvdpkiidsirrqightklqvkrstilapkppketttgfflgnffkartfqTFKLIRSYS
Low Complexity Region (SEG)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS
Disordered region (IsUnstruct)
********IRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD********************SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRK****************LHQIMFDD*********************VTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILA*****ETTTGFFLGNFFKARTFQTFKLI****
Disordered Region (DISOPRED)
*DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSE****RVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHT**************************FFKARTFQTFKLIRSY*
Disordered Region (DISEMBL)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS
Disordered Region (DISPRO)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYER***********SSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRST**********TTGFFLGNFFKARTFQTFKLIRSYS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.464	0.219	0.271	3e-12
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.437	0.203	0.255	5e-10
A4XWU3	899	[Protein-PII] uridylyltra	yes	no	0.145	0.071	0.446	9e-08
B1JBR2	900	[Protein-PII] uridylyltra	yes	no	0.176	0.086	0.375	1e-07
Q886P5	898	[Protein-PII] uridylyltra	yes	no	0.145	0.071	0.415	2e-07
Q48F57	898	[Protein-PII] uridylyltra	yes	no	0.145	0.071	0.415	2e-07
Q4ZWT0	898	[Protein-PII] uridylyltra	yes	no	0.145	0.071	0.420	3e-07
Q1I624	900	[Protein-PII] uridylyltra	yes	no	0.176	0.086	0.362	3e-07
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.115	0.054	0.382	3e-07
B0KS97	900	[Protein-PII] uridylyltra	yes	no	0.176	0.086	0.362	4e-07

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 31/236 (13%)

Query: 103 SLRSSVGVMPTEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV 160
            L  +V V+P  E   + +     D PGLFS++   +A    N+++A+I T +D  A  +
Sbjct: 711 GLTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDI 770

Query: 161 HVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 220
                  G+AI+  +R++ + + + +VL G     KA     PP +  R R L       
Sbjct: 771 FTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKALRR-QPPRLPERTRHL------- 822

Query: 221 RDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVV 279
                           +  P+V V N   K +TVI +  +DRP  L+ +   LTD+   +
Sbjct: 823 ----------------TVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQI 866

Query: 280 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI----ERRASEGLE 331
               V+T        FY++ V G+ I   A+  ++ + LEAAI     R+  EG E
Sbjct: 867 SSARVSTYGERVVDSFYVKDVFGMKIVHRAKLAQIREALEAAITQTVPRKVEEGAE 922

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 26/219 (11%)

Query: 107 SVGVMPTEEHTSIEFT--GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
           +V   P  E    E T    D PGLFS++   LA    ++V+A I T +D  A       
Sbjct: 744 TVEAYPIPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQ 803

Query: 165 HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE 224
              G + ++P +L  +  L+   L G  D RK     S      R R +H          
Sbjct: 804 DGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIH---------- 853

Query: 225 RVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGM 283
                          P+V + N   D +TVI +  +DRP LL D+   L+     +    
Sbjct: 854 -------------VPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAH 900

Query: 284 VNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322
           + T    A   FY+R + G+ I+      R+ + L A++
Sbjct: 901 ITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain ymp) GN=glnD PE=3 SV=1

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
           LEL   DR GLL+ I RIF E  LS++ A+I+T+G +V+D F+VTD    P+ DP++   
Sbjct: 817 LELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPLSDPELCAR 876

Query: 391 IRRQI 395
           ++  I
Sbjct: 877 LQETI 881

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain W619) GN=glnD PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
           LE+   DR GLL+ I RIF E  LS++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 391 IRRQIGHTKLQVKRSTILAP 410
           ++  I   +LQ  +++  +P
Sbjct: 877 LQEAIVQ-QLQAGQASDASP 895

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas putida (strain W619) (taxid: 390235)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=glnD PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
           LEL   DR GLL+ I +IF E  LS++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNQPLSDPQLCSQ 875

Query: 391 IRRQI 395
           ++  I
Sbjct: 876 LQEAI 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
           LEL   DR GLL+ I +IF E  LS++ A+I+T+G +V+D F++TD   +P+ DP++   
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCSQ 875

Query: 391 IRRQI 395
           ++  I
Sbjct: 876 LQDAI 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKII-- 388
           LEL   DR GLL+ I +IF E  LS++ A+I+T+G +V+D F++TD   +P+ DP++   
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQ 875

Query: 389 --DSIRRQI 395
             D+I +Q+
Sbjct: 876 LQDAIVKQL 884

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas syringae pv. syringae (strain B728a) (taxid: 205918)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila (strain L48) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
           LE+   DR GLL+ I RIF E  +S++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 391 IRRQIGHTKLQVKRSTILAP 410
           ++  I   +LQ  +++  +P
Sbjct: 877 LQEAIIQ-QLQAGQASEASP 895

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas entomophila (strain L48) (taxid: 384676)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV+IDNN     TVI+V+  ++ G+L  + + L ++ L I  A IS+ G   +DVF V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903

Query: 74  IDCDGKKIRDKEVIDYIQQRL 94
            D  G K+  +  +  I++RL
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain GB-1) GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
           LE+   DR GLL+ + RIF E  LS++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 391 IRRQIGHTKLQVKRSTILAP 410
           ++  I   +LQ  + +  +P
Sbjct: 877 LQEAIVQ-QLQAGQGSDTSP 895

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas putida (strain GB-1) (taxid: 76869)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
255543679	443	amino acid binding protein, putative [Ri	1.0	0.995	0.835	0.0
224143611	439	predicted protein [Populus trichocarpa]	0.993	0.997	0.830	0.0
224055763	441	predicted protein [Populus trichocarpa]	0.993	0.993	0.826	0.0
356561659	445	PREDICTED: uncharacterized protein LOC10	1.0	0.991	0.786	0.0
225451503	440	PREDICTED: uncharacterized protein LOC10	0.993	0.995	0.792	0.0
357503685	442	Amino acid binding protein, putative [Me	1.0	0.997	0.787	0.0
356571573	445	PREDICTED: uncharacterized protein LOC10	0.997	0.988	0.778	0.0
357503687	475	Amino acid binding protein, putative [Me	1.0	0.928	0.732	0.0
449490057	440	PREDICTED: uncharacterized protein LOC10	0.995	0.997	0.735	0.0
449441712	445	PREDICTED: uncharacterized protein LOC10	0.995	0.986	0.727	0.0

>gi|255543679|ref|XP_002512902.1| amino acid binding protein, putative [Ricinus communis] gi|223547913|gb|EEF49405.1| amino acid binding protein, putative [Ricinus communis]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/443 (83%), Positives = 401/443 (90%), Gaps = 2/443 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDN+ C DATVI+VDSVNKHGILLQV+QVL D+NLVIKKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDVCEDATVIQVDSVNKHGILLQVVQVLTDMNLVIKKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNVID DG KIRDKEVI YIQ+RLE++ASFAPSLR SVGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVIDQDGNKIRDKEVIGYIQRRLESNASFAPSLRGSVGVMPSEDHTSIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +G DRPGL SEVCAVLADL CNVVNAEIWTHN RAAAVVHVTD STG A+KDPKRLSTI
Sbjct: 121 LSGNDRPGLLSEVCAVLADLRCNVVNAEIWTHNARAAAVVHVTDDSTGCAVKDPKRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK-AVGRVEDKSSR 239
           KELL NVL+G +D + AK +LSPPGI +RERRLHQIMF DRDYERV++  +GR+EDKSSR
Sbjct: 181 KELLCNVLKGNNDLKAAKMTLSPPGITSRERRLHQIMFADRDYERVDRVGLGRLEDKSSR 240

Query: 240 PQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIR 298
           P VTVLNIEKDY+VITMRSKDRPKLLFDIVCTLTDM+YVVFHGMVN GR  EAYQEFYIR
Sbjct: 241 PHVTVLNIEKDYSVITMRSKDRPKLLFDIVCTLTDMEYVVFHGMVNAGRKEEAYQEFYIR 300

Query: 299 HVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIK 358
           HVDGLPISS+AERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITR FRENSL IK
Sbjct: 301 HVDGLPISSDAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRTFRENSLCIK 360

Query: 359 RAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTT 418
           RAEIST GG  KDTFYVTDVTG+PVDPKI+DSI RQIG T+LQVK++  L+PKP +ETT 
Sbjct: 361 RAEISTKGGIAKDTFYVTDVTGSPVDPKIVDSICRQIGQTRLQVKQNLTLSPKPAQETTM 420

Query: 419 GFFLGNFFKARTFQTFKLIRSYS 441
           G+ LG  FKARTFQ FKLIRSYS
Sbjct: 421 GYLLGTLFKARTFQNFKLIRSYS 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143611|ref|XP_002336061.1| predicted protein [Populus trichocarpa] gi|222869846|gb|EEF06977.1| predicted protein [Populus trichocarpa]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/442 (83%), Positives = 403/442 (91%), Gaps = 4/442 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EYAKLIRR+NPPRVVIDN+ C +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNV+D DGKKIRDKEV+DYIQ+RLE++ASFAPSLR SVGVMP+EEHT+IE
Sbjct: 61  SSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRRLESNASFAPSLRGSVGVMPSEEHTAIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SEVCAVL DLHCNVVNAEIWTHN RAAAVVHVTD STG AIKDPKRLSTI
Sbjct: 121 LTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSR 239
           +ELL NVL+G DD + A T+LSPPG+ +RERRLHQIMF DRDYERVE+A + R EDKSSR
Sbjct: 181 RELLCNVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKSSR 240

Query: 240 PQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
           P VTVLNIE+DYTV++MRSKDRPKLLFDIVCTLTDM+YVVFHGMV+TGR EAYQEFYIRH
Sbjct: 241 PHVTVLNIERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFYIRH 300

Query: 300 VDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKR 359
           VDGLP+SS+AERERV+QCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSL IKR
Sbjct: 301 VDGLPVSSDAERERVVQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLCIKR 360

Query: 360 AEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTG 419
           AEI T GGK KDTFYVTDVTGNPVDPKIIDSI RQIG TKL VKR++IL+PKPP+ETT G
Sbjct: 361 AEILTKGGKAKDTFYVTDVTGNPVDPKIIDSICRQIGQTKLLVKRNSILSPKPPQETTMG 420

Query: 420 FFLGNFFKARTFQTFKLIRSYS 441
           +  GN FKAR   TFKLIRSYS
Sbjct: 421 YIFGNLFKAR---TFKLIRSYS 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055763|ref|XP_002298641.1| predicted protein [Populus trichocarpa] gi|222845899|gb|EEE83446.1| predicted protein [Populus trichocarpa]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/444 (82%), Positives = 403/444 (90%), Gaps = 6/444 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EYAKLIRR+NPPRVVIDN+ C +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ--RLETDASFAPSLRSSVGVMPTEEHTS 118
           SSDG WFMDVFNV+D DGKKIRDKEV+DYIQ+  RLE++ASFAPSLR SVGVMP+EEHT+
Sbjct: 61  SSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRVRRLESNASFAPSLRGSVGVMPSEEHTA 120

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
           IE TGTDRPGL SEVCAVL DLHCNVVNAEIWTHN RAAAVVHVTD STG AIKDPKRLS
Sbjct: 121 IELTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLS 180

Query: 179 TIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKS 237
           TI+ELL NVL+G DD + A T+LSPPG+ +RERRLHQIMF DRDYERVE+A + R EDKS
Sbjct: 181 TIRELLCNVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKS 240

Query: 238 SRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI 297
           SRP VTVLNIE+DYTV++MRSKDRPKLLFDIVCTLTDM+YVVFHGMV+TGR EAYQEFYI
Sbjct: 241 SRPHVTVLNIERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFYI 300

Query: 298 RHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSI 357
           RHVDGLP+SS+AERERV+QCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSL I
Sbjct: 301 RHVDGLPVSSDAERERVVQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLCI 360

Query: 358 KRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETT 417
           KRAEI T GGK KDTFYVTDVTGNPVDPKIIDSI RQIG TKL VKR++IL+PKPP+ETT
Sbjct: 361 KRAEILTKGGKAKDTFYVTDVTGNPVDPKIIDSICRQIGQTKLLVKRNSILSPKPPQETT 420

Query: 418 TGFFLGNFFKARTFQTFKLIRSYS 441
            G+  GN FKAR   TFKLIRSYS
Sbjct: 421 MGYIFGNLFKAR---TFKLIRSYS 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561659|ref|XP_003549097.1| PREDICTED: uncharacterized protein LOC100818506 [Glycine max]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/445 (78%), Positives = 392/445 (88%), Gaps = 4/445 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSD  WFMDVFNVID +G KIRDKEVIDYIQ+RLE + SFAPSLR SVGV+PTEEHT IE
Sbjct: 61  SSDAVWFMDVFNVIDHNGNKIRDKEVIDYIQRRLENNPSFAPSLRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVL DLHCNVV AEIWTHN RAAAVVHVTD S+G AIKDP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSR 239
           ++LL NVLRG +D + A+T+LSPPG+ NR+RRLHQIMF DRDYER+E+A  G + D+  R
Sbjct: 181 RDLLSNVLRGSNDPKTARTTLSPPGVTNRDRRLHQIMFADRDYERIERAGRGGLRDRDKR 240

Query: 240 --PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFY 296
             P VTV++ +EKDYTV+TMR++DRPKLLFDIVCTLTDMQYVVFHG+V T RTEA+QEFY
Sbjct: 241 PLPHVTVVDCVEKDYTVVTMRAQDRPKLLFDIVCTLTDMQYVVFHGVVKTLRTEAFQEFY 300

Query: 297 IRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLS 356
           IRHVDG PISSEAERER++QCLEAAIERRASEG+ELELCTEDRVGLLSDITRIFRENSL 
Sbjct: 301 IRHVDGFPISSEAERERLVQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLC 360

Query: 357 IKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKET 416
           IKRAEIST  GK +DTFYVTDVTGNPVDPKIIDSIRRQIG   L+VK ++ L+PKP + T
Sbjct: 361 IKRAEISTEEGKARDTFYVTDVTGNPVDPKIIDSIRRQIGDKVLKVKHNSNLSPKPSQPT 420

Query: 417 TTGFFLGNFFKARTFQTFKLIRSYS 441
           T GF LGNFFKAR+FQ FKLIRSYS
Sbjct: 421 TIGFLLGNFFKARSFQNFKLIRSYS 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451503|ref|XP_002272024.1| PREDICTED: uncharacterized protein LOC100248040 [Vitis vinifera] gi|296082319|emb|CBI21324.3| unnamed protein product [Vitis vinifera]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/443 (79%), Positives = 389/443 (87%), Gaps = 5/443 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDN+   +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDASEEATVIQVDSVNKHGILLEVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNV+D DG KIRDK VI+YI + LE DASF P +R +VGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVVDGDGNKIRDKGVINYITKTLERDASFVPPMRGTVGVMPSEDHTSIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +GTDRPGL SEVCAVLADLHCNVVNAEIWTHN RAAAVVHVTD STG AI+DP RLS I
Sbjct: 121 LSGTDRPGLLSEVCAVLADLHCNVVNAEIWTHNARAAAVVHVTDDSTGCAIEDPNRLSKI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSR 239
           KELL NVL+G +D + AK +LSPPG  +RERRLHQIMF DRDY+RVE+A +G+  DKSSR
Sbjct: 181 KELLCNVLKGNNDLKTAKMTLSPPGFTHRERRLHQIMFADRDYQRVERAELGK--DKSSR 238

Query: 240 PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298
           P VTVL+ IEKDYTVITMRSKDRPKLLFD VCTLTDMQYVVFHG+V+TGR EAYQE+YIR
Sbjct: 239 PHVTVLDCIEKDYTVITMRSKDRPKLLFDTVCTLTDMQYVVFHGVVHTGRMEAYQEYYIR 298

Query: 299 HVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIK 358
           HVDGLP+SS+AERERVI+CLEAAIERRASEGLELEL TEDR GLLSDITR+FRENSL IK
Sbjct: 299 HVDGLPMSSDAERERVIECLEAAIERRASEGLELELRTEDRFGLLSDITRVFRENSLCIK 358

Query: 359 RAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTT 418
           RAEIST GGK KDTFYVTDVTGNPV+P+IIDSIR+QIGH+ LQVK S  L+PK P+ETT 
Sbjct: 359 RAEISTEGGKAKDTFYVTDVTGNPVNPQIIDSIRQQIGHSILQVKNSN-LSPKAPQETTM 417

Query: 419 GFFLGNFFKARTFQTFKLIRSYS 441
            F  GN FK RT Q FKLIRSYS
Sbjct: 418 SFLFGNIFKCRTLQNFKLIRSYS 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503685|ref|XP_003622131.1| Amino acid binding protein, putative [Medicago truncatula] gi|355497146|gb|AES78349.1| Amino acid binding protein, putative [Medicago truncatula]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/442 (78%), Positives = 383/442 (86%), Gaps = 1/442 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVIKKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNV D +G KI+DKEVIDYIQ+RLE + SF  S+R SVGV+PTEEHT IE
Sbjct: 61  SSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVLADL CNVV AEIWTHN RAAAVVHVTD S+G AI+DP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           ++LL NVLRG DD + AKT+LS PG+  R+RRLHQIMF DRDYERVE+A  R  DK   P
Sbjct: 181 RDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLHQIMFADRDYERVERAGLRERDKGPFP 240

Query: 241 QVTVLNI-EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
            VTV +  E+DYTV+ MR+KDRPKLLFDIVCTLTDMQYVVFHG+V T RT AYQEFYIRH
Sbjct: 241 HVTVSDCTERDYTVVIMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRH 300

Query: 300 VDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKR 359
           VDG PISSEAERER+IQCLEAAIERRASEG+ELELCTEDRVGLLSDITRIFRENSL IKR
Sbjct: 301 VDGFPISSEAERERLIQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKR 360

Query: 360 AEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTG 419
           AEIST  GK KDTFYVTDVTGNPVDPK IDSIRRQIG T LQVK ++ L+PKPP+ TT G
Sbjct: 361 AEISTENGKAKDTFYVTDVTGNPVDPKSIDSIRRQIGDTVLQVKHNSSLSPKPPQGTTIG 420

Query: 420 FFLGNFFKARTFQTFKLIRSYS 441
           F  G+FFKAR+FQ FKLIRSYS
Sbjct: 421 FLFGSFFKARSFQNFKLIRSYS 442

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571573|ref|XP_003553951.1| PREDICTED: uncharacterized protein LOC100801859 [Glycine max]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/446 (77%), Positives = 387/446 (86%), Gaps = 6/446 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNVID  G KIRDKEVIDYIQ+RLE + SF PSLR SVGV+PTEEHT IE
Sbjct: 61  SSDGVWFMDVFNVIDHKGNKIRDKEVIDYIQRRLENNPSFVPSLRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVL DLHCNVV AEIWTHN RAAAVVHVTD S+G AIKDP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVE----DK 236
           ++LL NVLRG +D + A+T+LSP G+ NR+RRLHQIMF DRDYER+E+A G+ E    DK
Sbjct: 181 RDLLSNVLRGSNDPKTARTTLSPHGVTNRDRRLHQIMFADRDYERIERA-GQEELRDRDK 239

Query: 237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEF 295
              P VTV + +EKDYTV+TMR++DRPKLLFDIVCTLTDMQYVVFHG+V T R EA+QEF
Sbjct: 240 RPLPHVTVGDCVEKDYTVVTMRAQDRPKLLFDIVCTLTDMQYVVFHGVVKTLRMEAFQEF 299

Query: 296 YIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSL 355
           YIRHVDG PISSEAERER++QCLEAAIERRASEG+ LELCTEDRVGLLSDITR FRENSL
Sbjct: 300 YIRHVDGFPISSEAERERLMQCLEAAIERRASEGMGLELCTEDRVGLLSDITRTFRENSL 359

Query: 356 SIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKE 415
            IKRAEIST  GK +DTFYVTDVTGNPVDPKIIDSIRRQIG   L+VK ++ L+PKPP+ 
Sbjct: 360 CIKRAEISTEEGKARDTFYVTDVTGNPVDPKIIDSIRRQIGDKVLKVKHNSNLSPKPPQP 419

Query: 416 TTTGFFLGNFFKARTFQTFKLIRSYS 441
           TT GF LGNFFKAR+FQ FKLI+SYS
Sbjct: 420 TTIGFLLGNFFKARSFQNFKLIKSYS 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503687|ref|XP_003622132.1| Amino acid binding protein, putative [Medicago truncatula] gi|355497147|gb|AES78350.1| Amino acid binding protein, putative [Medicago truncatula]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/475 (73%), Positives = 383/475 (80%), Gaps = 34/475 (7%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVIKKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ---------------------------- 92
           SSDG WFMDVFNV D +G KI+DKEVIDYIQ+                            
Sbjct: 61  SSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRVGSCLFAISRMLQLTLIYVARSLWKGDF 120

Query: 93  -----RLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNA 147
                RLE + SF  S+R SVGV+PTEEHT IE TGTDRPGL SE+CAVLADL CNVV A
Sbjct: 121 TVLYHRLEKNPSFETSMRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLADLRCNVVTA 180

Query: 148 EIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 207
           EIWTHN RAAAVVHVTD S+G AI+DP RLSTI++LL NVLRG DD + AKT+LS PG+ 
Sbjct: 181 EIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTIRDLLCNVLRGSDDPKTAKTALSHPGVT 240

Query: 208 NRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNI-EKDYTVITMRSKDRPKLLF 266
            R+RRLHQIMF DRDYERVE+A  R  DK   P VTV +  E+DYTV+ MR+KDRPKLLF
Sbjct: 241 YRDRRLHQIMFADRDYERVERAGLRERDKGPFPHVTVSDCTERDYTVVIMRAKDRPKLLF 300

Query: 267 DIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA 326
           DIVCTLTDMQYVVFHG+V T RT AYQEFYIRHVDG PISSEAERER+IQCLEAAIERRA
Sbjct: 301 DIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRHVDGFPISSEAERERLIQCLEAAIERRA 360

Query: 327 SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPK 386
           SEG+ELELCTEDRVGLLSDITRIFRENSL IKRAEIST  GK KDTFYVTDVTGNPVDPK
Sbjct: 361 SEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEISTENGKAKDTFYVTDVTGNPVDPK 420

Query: 387 IIDSIRRQIGHTKLQVKRSTILAPKPPKETTTGFFLGNFFKARTFQTFKLIRSYS 441
            IDSIRRQIG T LQVK ++ L+PKPP+ TT GF  G+FFKAR+FQ FKLIRSYS
Sbjct: 421 SIDSIRRQIGDTVLQVKHNSSLSPKPPQGTTIGFLFGSFFKARSFQNFKLIRSYS 475

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490057|ref|XP_004158495.1| PREDICTED: uncharacterized protein LOC101225681 [Cucumis sativus]

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/442 (73%), Positives = 375/442 (84%), Gaps = 3/442 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EY KLIRR+NPPRVVIDNN C DATVI+VDS+NKHGILL+V+QVL D+NL+I KAYI
Sbjct: 1   MDNEYDKLIRRLNPPRVVIDNNACKDATVIQVDSMNKHGILLKVVQVLMDMNLIITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNVI  +G KIRD+EVI+ IQ RLE  ASF PSLR SVGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVITYEGNKIRDQEVINAIQMRLE--ASFVPSLRESVGVMPSEDHTSIE 118

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +GTDRPGL SEVCAVLADLHCNVVNA++WTHN+RAAAVVHVTD +TG AI DP+RL TI
Sbjct: 119 LSGTDRPGLLSEVCAVLADLHCNVVNADVWTHNNRAAAVVHVTDDATGRAINDPQRLLTI 178

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           KELL NVLRG  + ++AK +LSPPG+ + +RRLHQIM  DRDYER  K    VEDK+ RP
Sbjct: 179 KELLCNVLRGNGELKEAKMTLSPPGVTSTDRRLHQIMLADRDYERAVKTKLEVEDKNLRP 238

Query: 241 QVTVLNI-EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
            VTV +  EKDYT+IT R++DRPKLLFD++CTLTDM+YVVFHGMV TGR EA+ EFYIRH
Sbjct: 239 HVTVFDCTEKDYTLITTRTRDRPKLLFDVLCTLTDMEYVVFHGMVETGRMEAFLEFYIRH 298

Query: 300 VDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKR 359
            DGLPISS+AER+RV+ CLEAAIERR SEGL+LELC EDRVGLLSDITRIFRENSL I+R
Sbjct: 299 KDGLPISSKAERDRVLHCLEAAIERRESEGLKLELCAEDRVGLLSDITRIFRENSLCIRR 358

Query: 360 AEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPKETTTG 419
           AEI+T  GK KD FYVTD+TG  +D K+++SIR+QIG   LQVK ++ L+  PPKE T G
Sbjct: 359 AEIATKRGKAKDIFYVTDMTGTTIDAKVVESIRKQIGDAMLQVKHNSCLSETPPKEMTAG 418

Query: 420 FFLGNFFKARTFQTFKLIRSYS 441
           FFLG FFKARTFQ FKLIRSYS
Sbjct: 419 FFLGYFFKARTFQNFKLIRSYS 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441712|ref|XP_004138626.1| PREDICTED: uncharacterized protein LOC101213097 [Cucumis sativus]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/447 (72%), Positives = 376/447 (84%), Gaps = 8/447 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EY KLIRR+NPPRVVIDNN C DATVI+VDS+NKHGILL+V+QVL D+NL+I KAYI
Sbjct: 1   MDNEYDKLIRRLNPPRVVIDNNACKDATVIQVDSMNKHGILLKVVQVLMDMNLIITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNVI  +G KIRD+EVI+ IQ RLE  ASF PSLR SVGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVITYEGNKIRDQEVINAIQMRLE--ASFVPSLRESVGVMPSEDHTSIE 118

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +GTDRPGL SEVCAVLADLHCNVVNA++WTHN+RAAAVVHVTD +TG AI DP+RL TI
Sbjct: 119 LSGTDRPGLLSEVCAVLADLHCNVVNADVWTHNNRAAAVVHVTDDATGRAINDPQRLLTI 178

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           KELL NVLRG  + ++AK +LSPPG+ + +RRLHQIM  DRDYER  K    VEDK+ RP
Sbjct: 179 KELLCNVLRGNGELKEAKMTLSPPGVTSTDRRLHQIMLADRDYERAVKTKLEVEDKNLRP 238

Query: 241 QVTVLNI-EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-----AYQE 294
            VTV +  EKDYT+IT R++DRPKLLFD++CTLTDM+YVVFHGMV TGR E     ++QE
Sbjct: 239 HVTVFDCTEKDYTLITTRTRDRPKLLFDVLCTLTDMEYVVFHGMVETGRMEENWSFSFQE 298

Query: 295 FYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENS 354
           FYIRH DGLPISS+AER+RV+ CLEAAIERR SEGL+LELC EDRVGLLSDITRIFRENS
Sbjct: 299 FYIRHKDGLPISSKAERDRVLHCLEAAIERRESEGLKLELCAEDRVGLLSDITRIFRENS 358

Query: 355 LSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPK 414
           L I+RAEI+T  GK KD FYVTD+TG  +D K+++SIR+QIG   LQVK ++ L+  PPK
Sbjct: 359 LCIRRAEIATKRGKAKDIFYVTDMTGTTIDAKVVESIRKQIGDAMLQVKHNSCLSETPPK 418

Query: 415 ETTTGFFLGNFFKARTFQTFKLIRSYS 441
           E T GFFLG FFKARTFQ FKLIRSYS
Sbjct: 419 EMTAGFFLGYFFKARTFQNFKLIRSYS 445

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.959	0.976	0.738	3.5e-162
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.995	0.964	0.612	1.1e-140
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.990	0.958	0.593	1.3e-132
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.954	0.929	0.505	1.1e-108
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.882	0.882	0.526	2e-104
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.875	0.859	0.512	2.8e-98
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.442	0.39	0.454	3e-95
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.671	0.620	0.391	9.9e-55
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.267	0.406	0.298	1.2e-06
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.174	0.255	0.269	2.3e-06

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
 Identities = 322/436 (73%), Positives = 361/436 (82%)

Query:     2 DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61
             DDEYAKLIRRMNPPRVVIDNN   DATVI+VDSVNKHG LL+V+QVL D+NLVIKKAYIS
Sbjct:     3 DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query:    62 SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-FAPSLRSSVGVMPTEEHTSIE 120
             SDGGWFMDVF VID DG KIRD +V+DYIQ+R+E++A  F P LRSSVGVMPT+E+TSIE
Sbjct:    63 SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIE 122

Query:   121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
               GTDRPGL SEV AVL DLHCNVVNAEIWTHN RAAAV+HVTD+ST  AI DP RLSTI
Sbjct:   123 LAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTI 182

Query:   181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
             KELL NV+R     R AKT  S     +RERRLHQIMFDDRDYE V++A       +SRP
Sbjct:   183 KELLCNVVRTNSGSRAAKTVFSCSDT-HRERRLHQIMFDDRDYEGVKRA----RTSASRP 237

Query:   241 QVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300
              VT++NIEKDYTV+TMRSKDRPKL+FD+VCTLTDMQYVVFHGMV+T   EAYQEFYIRHV
Sbjct:   238 SVTLMNIEKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHV 297

Query:   301 DGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRA 360
             DGLPI+SEAE+ERVIQCLEAAIERRASEGLELEL  EDRVGLLSDITR FRENSL+I RA
Sbjct:   298 DGLPINSEAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFRENSLTIVRA 357

Query:   361 EISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKR------STILAPKPPK 414
             EIST  GK KDTFYVTDVTGNPV+ KI++SIR+QIG +KL+VK+      S +   +P  
Sbjct:   358 EISTREGKAKDTFYVTDVTGNPVESKIVESIRQQIGVSKLKVKKKEKEHCSVLGTSRPSH 417

Query:   415 ETTT-GFFLGNFFKAR 429
             ETTT G+ L N FK +
Sbjct:   418 ETTTMGYLLSNIFKPK 433

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
 Identities = 274/447 (61%), Positives = 345/447 (77%)

Query:     1 MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
             MD+EY KLIRRMNPPRVVIDN++C  ATVI+VDS N++GILL+V+Q+L D+NL I KAYI
Sbjct:    11 MDNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYI 70

Query:    61 SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
             SSDGGWFMDVFNV D DG K+ D+ V+DYIQ+ L  +A F+ S+RS VGV+P+ + T IE
Sbjct:    71 SSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRS-VGVIPSTDSTVIE 129

Query:   121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
              TG DRPGL SE+ AVL  L C+V+NAEIWTHN RAAAV+ VTD  TG  I DP+RLS I
Sbjct:   130 LTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERLSRI 189

Query:   181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE-RVEKAVGRVEDKSSR 239
             K LL NVL+G +  R+AKT +S  G ++ +RRLHQ+MF+DRDYE R+      ++D+  R
Sbjct:   190 KNLLRNVLKGSNTPREAKTVVSH-GEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQR 248

Query:   240 PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298
             P V V N ++KDY+V+T+R KDRPKLLFD VCTLTDMQYVVFHG V+T  TEA+QE+Y+R
Sbjct:   249 PDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAFQEYYVR 308

Query:   299 HVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIK 358
             H+DG P+ SEAE++RVIQCLEAAI+RR SEGL+LELCT DRVGLLS++TRIFRENSL++ 
Sbjct:   309 HIDGSPVKSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVT 368

Query:   359 RAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPK----PPK 414
             RAE+ T GGK  +TFYV+D +G  +D K IDSIR+ IG T L+VK +     +    P  
Sbjct:   369 RAEVKTKGGKALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQEQQQRQKSPSH 428

Query:   415 ETTTGFFLGNFFKARTFQTFKLIRSYS 441
             E+ T F  G  FK+++F  F L+RSYS
Sbjct:   429 ESPTRFLFGGLFKSKSFVNFGLVRSYS 455

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
 Identities = 266/448 (59%), Positives = 329/448 (73%)

Query:     1 MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
             MDDE AK IRR+NPPRVVIDN  C D TVIKVDS NKHGILL+V+QVL ++NL IKKAYI
Sbjct:    11 MDDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYI 70

Query:    61 SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS--FAPSLRSSVGVMPTEEHTS 118
             SSDGGWFMDVFNV D DG K+ D+ V++YI++ L  D S  F+PS+RS++GV  + ++T 
Sbjct:    71 SSDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTIGVKQSVDYTV 130

Query:   119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
             +E TGTDRPGL SE+CAVL DL CNVVNAEIWTH  +AAAV+ VTD  T  AI DP+RLS
Sbjct:   131 VELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLS 190

Query:   179 TIKELLFNVLRGYDD---FRKAKTSLSPP-GIMNRERRLHQIMFDDRDYERVEKAVGRVE 234
              I++LL  VL G      FR+ KT++S      + +R+LHQ+MF DRDY+  E  V   E
Sbjct:   191 KIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDD-E 249

Query:   235 DKSSR--PQVTVLNI-EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEA 291
             DK  R  P V V N+ + DY+++ ++ KDRPKLLFD V TLTDM YVV H  ++    +A
Sbjct:   250 DKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQA 309

Query:   292 YQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFR 351
             YQE+YIRH DG P+ SEAER+RVI+CL+AAI+RR SEGL+LELCT DRVGLLSD+TRIFR
Sbjct:   310 YQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVGLLSDVTRIFR 369

Query:   352 ENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPK 411
             ENSL++ RAE+ T G K  +TFYV D +G  VD K I+SIR+ IG T LQVK     A  
Sbjct:   370 ENSLTVTRAEVKTKGDKALNTFYVRDASGYQVDTKTIESIRQVIGQTILQVKGGNTDAKP 429

Query:   412 PPKETTTGFFLGNFFKARTFQTFKLIRS 439
              P+++ TGF  G  FK+R+F  F LIRS
Sbjct:   430 SPQDSPTGFLFG-VFKSRSFVNFGLIRS 456

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 225/445 (50%), Positives = 305/445 (68%)

Query:     2 DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61
             D EY  L  R+NPP V IDN +C + T++KVDS+NK GILL+V+QVL D++L I KAYIS
Sbjct:    10 DPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYIS 69

Query:    62 SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS----SVGVMPTEEHT 117
             SDGGWFMDVF+V D  G K+ D + IDYI++ L      + S  +     VGV    +HT
Sbjct:    70 SDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHT 129

Query:   118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL 177
             SIE    DRPGL SEV AVLADL+ NVV AE WTHN R A V++V D++T  A+ DP+RL
Sbjct:   130 SIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRAVDDPERL 189

Query:   178 STIKELLFNVLRGYD--DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVED 235
             S+++E L NVLRG +  D + A+TSLS  G  + +RRLHQ+ F DRDYE    AV +++D
Sbjct:   190 SSMEEQLNNVLRGCEEQDEKFARTSLSI-GSTHVDRRLHQMFFADRDYE----AVTKLDD 244

Query:   236 KSS---RPQVTVLNIE-KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEA 291
              +S    P++TV + E K Y+VI +  +DRPKL+FDIVCTLTDMQY+VFH  +++  + A
Sbjct:   245 SASCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHA 304

Query:   292 YQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFR 351
              QE++IRH DG  + +E E+ERV++CLEAAI RR SEG  LELC +DRVGLLS++TRI R
Sbjct:   305 SQEYFIRHKDGCTLDTEGEKERVVKCLEAAIHRRVSEGWSLELCAKDRVGLLSEVTRILR 364

Query:   352 ENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAPK 411
             E+ LS+ RA ++T+G +  + FYV D +GNPVD K I+++R +IGH+ +   ++ + + K
Sbjct:   365 EHGLSVSRAGVTTVGEQAVNVFYVKDASGNPVDVKTIEALRGEIGHSMMIDFKNKVPSRK 424

Query:   412 PPKE---------TTTGFFLGNFFK 427
               +E           T FF GN  +
Sbjct:   425 WKEEGQAGTGGGWAKTSFFFGNLLE 449

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 212/403 (52%), Positives = 285/403 (70%)

Query:     3 DEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62
             DEY KL+ RMN PRVVIDN  C+ AT++KVDS  ++GILL+ +Q+L D+NL IKKAYISS
Sbjct:     8 DEYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISS 67

Query:    63 DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFT 122
             DG W MDVF+V D +G K+ D+ V+ YI+Q +ET   +  ++  + G+      T++E T
Sbjct:    68 DGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSIET-VYYGENIEVN-GL------TALELT 119

Query:   123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182
             GTDR GL SE+ AVL+DL+C+VV+A++WTHN R A+V+++ D  +G  I D  R+S I+ 
Sbjct:   120 GTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEG 179

Query:   183 LLFNVLRGYDDFRKA-KTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQ 241
              L NVL G +D   A KT ++   +M+ ERRLHQ+MF+DRDYER  K      ++S    
Sbjct:   180 RLKNVLNGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKK----HERSPMVV 235

Query:   242 VTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300
             VTV N  E+ Y+V+ +  +DR KLLFD+VCTLTDM+Y VFH  +NT   +A+ EFYIRH 
Sbjct:   236 VTVQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIRHK 295

Query:   301 DGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRA 360
             DG PISSEAER+RVIQCLEAA+ERRA EG+ LEL   D+ GLL+++TR FREN L++ R 
Sbjct:   296 DGSPISSEAERQRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTFRENGLNVTRT 355

Query:   361 EISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVK 403
             EIST      + FYVTD  G+  D K+I+S+R +IG   L+VK
Sbjct:   356 EISTSSDMATNIFYVTDANGDEPDFKLIESVREKIGLECLRVK 398

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 207/404 (51%), Positives = 276/404 (68%)

Query:     3 DEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62
             +EY KL+ RMN PRVVIDN  C ++TV+K+DS    GILL+ +Q+L D+NL IKKAYISS
Sbjct:     8 NEYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISS 67

Query:    63 DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFT 122
             DG W MDVF+V D +G K+ D+ +I YI++ +ET  S         G+      T++E T
Sbjct:    68 DGKWNMDVFHVSDLNGDKLTDENLIRYIEKSIET--SHYCKTEGYTGL------TALELT 119

Query:   123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK-DPKRLSTIK 181
             GTDR GL SEV AVLADL C+VV A+ WTHN R A++++V D ++G  I  D  R+  ++
Sbjct:   120 GTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVE 179

Query:   182 ELLFNVLRGYDDFRK-AKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
               L N+L+  D ++   +T +S  G  + ERRLHQ MF DRDYE+      + + + S P
Sbjct:   180 GQLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEK------KFDIEKS-P 232

Query:   241 QVTVLNIEK-DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
              V+V N+ K  Y+V+ ++ KDR KLLFD+VCTLTDM Y+VFH  + T    A+ EFY+RH
Sbjct:   233 IVSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRH 292

Query:   300 VDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKR 359
              DG P+SSE ER+R+IQCL+AAIERR  +G+ LELCT DR GLL+++TRI REN L+I R
Sbjct:   293 SDGHPVSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIAR 352

Query:   360 AEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVK 403
             AEIST     ++ FYVTD  GN +DP+II SIR +IG   L VK
Sbjct:   353 AEISTKDSIARNVFYVTDANGNLIDPEIIKSIREKIGIDDLSVK 396

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
 Identities = 95/209 (45%), Positives = 148/209 (70%)

Query:   208 NRERRLHQIMFDDRDYER-------VEKAVGRVE--DKSSRPQVTVLNI----EKDYTVI 254
             N ERRLHQ+M   RD++        +     ++E  D   R + T+++I    E+ Y+++
Sbjct:   241 NMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKER-KTTIVSIGNCEERGYSIV 299

Query:   255 TMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERV 314
             T++SKDR +L+FD +CTL DMQYV+FH  + +   +A+QE++IRH+DG  +++E E+ERV
Sbjct:   300 TVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERV 359

Query:   315 IQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFY 374
             I+CLEAAIERR  EG++LELC E+RVGLLSDITR+ REN L++ RA++ T G K  + FY
Sbjct:   360 IKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFY 419

Query:   375 VTDVTGNPVDPKIIDSIRRQIGHTKLQVK 403
             V D++GN +D + ++S+++++    L+VK
Sbjct:   420 VRDISGNKIDMEFVESVKKEMRPIHLEVK 448

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 122/312 (39%), Positives = 186/312 (59%)

Query:   115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDP 174
             EHT+ E TG +RPGL SE+ AVL+D+ C+V  A  WTH++RAA V+++ D   G  I DP
Sbjct:   131 EHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDGFNGGPIIDP 190

Query:   175 KRLSTIKELLFNVLRGYD---DF-----RKAKTSLSPPGIMNRERRLHQIMFDDRDYERV 226
              R + +K+ L  V+  +    D      R  +    P G  + ERRLH++M+ + DYE  
Sbjct:   191 IRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELMYGEGDYENC 250

Query:   227 -------EKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVV 279
                    ++       +  R  VT+      Y+++ ++ +DRPKLLFD VC L ++Q+VV
Sbjct:   251 FDCDCFGDRCDALWRGRCERIHVTI-EACNGYSMVNVKCRDRPKLLFDTVCALKELQFVV 309

Query:   280 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDR 339
             FH +     + A QE++IR  +G  + +E +RER+  CL AAI RRAS+GL+LE+ TE++
Sbjct:   310 FHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAISRRASQGLKLEIRTENK 369

Query:   340 VGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 399
             +GLLSD+TR+ REN LSI RAE+ T G     +FYVTDV G    P  ++++ R++G   
Sbjct:   370 MGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVNGGETGPSEVEAVVRELGGAV 429

Query:   400 LQVKRSTILAPK 411
             +   +   + P+
Sbjct:   430 VSAVKGVGMMPR 441

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 40/134 (29%), Positives = 68/134 (50%)

Query:    15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
             P V+ID ++  DATV++V   ++ G LL  +  L ++ L + KA +  D     + F + 
Sbjct:    84 PVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAIT 143

Query:    75 DCD-GKKIRDKEVIDYIQ-----QRLE--TDASFAPSLRSSVGVMPTEE--------HTS 118
               D G+K+ D E+++ I+       LE   ++S   ++ ++ GV+P  E        H +
Sbjct:   144 RADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPIDVDIATHIT 203

Query:   119 IEFTGTDRPGLFSE 132
             IE  G DR  LF E
Sbjct:   204 IEDDGPDRSLLFIE 217

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 21/78 (26%), Positives = 46/78 (58%)

Query:    15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
             P V+ID +   +AT++++   N+ G L+  ++ L D+ L + K  +S++G      F++ 
Sbjct:    95 PMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154

Query:    75 DCD-GKKIRDKEVIDYIQ 91
               D G+K+ D ++++ I+
Sbjct:   155 KRDTGRKVEDPDLLEQIR 172

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.3173.1 hypothetical protein (434 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	3e-37
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	3e-35
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	2e-34
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	5e-30
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	8e-25
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-16
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	7e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-13
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-11
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-11
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	9e-11
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-09
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-08
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	3e-08
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	6e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-07
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	1e-07
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-07
pfam01842	66	pfam01842, ACT, ACT domain	2e-06
pfam01842	66	pfam01842, ACT, ACT domain	3e-06
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	4e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	4e-06
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	4e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	6e-06
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	6e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	9e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	2e-05
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	3e-05
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	3e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	5e-05
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	5e-05
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	1e-04
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-04
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	1e-04
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-04
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	4e-04
pfam13740	76	pfam13740, ACT_6, ACT domain	4e-04
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	5e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	5e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	7e-04
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	8e-04
cd04928	68	cd04928, ACT_TyrKc, Uncharacterized, N-terminal AC	0.002
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	0.003
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  130 bits (328), Expect = 3e-37
 Identities = 49/75 (65%), Positives = 64/75 (85%)

Query: 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAE 310
           Y+V+T++ +DRPKLLFD+VCTLTDM YVVFH  ++T   +A+QE+YIRH DG  +S+E E
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 311 RERVIQCLEAAIERR 325
           R+RVI+CLEAAIERR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  124 bits (314), Expect = 3e-35
 Identities = 45/72 (62%), Positives = 56/72 (77%)

Query: 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKII 388
           G+ LEL TEDRVGLLSD+TR+FREN L++ RAEIST G    + FYVTD  GNPVDPK I
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 389 DSIRRQIGHTKL 400
           +++R++IG   L
Sbjct: 61  EAVRQEIGPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  122 bits (309), Expect = 2e-34
 Identities = 49/74 (66%), Positives = 56/74 (75%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T+IE TGTDRPGL SEV AVLADLHCNVV A  WTHN R A V++V D  TG  I DP R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 177 LSTIKELLFNVLRG 190
           L++I++ L NVLRG
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  110 bits (277), Expect = 5e-30
 Identities = 41/72 (56%), Positives = 52/72 (72%)

Query: 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEV 86
           T++KVDS  K GILL+ +QVL D++L I KAYISSDGGWFMDVF+V D  G K+ D  +
Sbjct: 1  CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 87 IDYIQQRLETDA 98
          I YI++ L T  
Sbjct: 61 IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 96.4 bits (241), Expect = 8e-25
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 391
           LEL   DR GLL+D+TR+  E  L+I  A+I+T+G + +D FYVTD  G P+DP+  +++
Sbjct: 3   LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEAL 62

Query: 392 RRQIGHT 398
           R  +G  
Sbjct: 63  RAALGEA 69

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 81.3 bits (202), Expect = 2e-19
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T +E T  DRPGL ++V  VLA+L  N+ +A+I T  +RA  V +VTD + G  + DP+R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPER 58

Query: 177 LSTIKELLFNVL 188
              ++  L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 79.5 bits (197), Expect = 9e-19
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query: 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIID 389
             +E+   DR GLL+DITR+  +  L+I  A IST G +  D FYVTD  G P+DP+ I 
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 390 SIRRQIGH 397
            +   +  
Sbjct: 61  RLEEALED 68

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 73.7 bits (182), Expect = 1e-16
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T +E    DRPGL +++  VLADL  N+ +A I T  +RA  V +VTD S G  + DP+R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPER 58

Query: 177 LSTIKELLFNVL 188
           ++ ++E L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 73.4 bits (181), Expect = 7e-14
 Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 29/237 (12%)

Query: 95  ETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154
           + D +  P L + V   P    T +     D PGLFS +    A    N+V+A I+T  D
Sbjct: 712 DADDAGRP-LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTD 770

Query: 155 -RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRL 213
            RA     + D + G    +P+RL+ + + + + L G                   E RL
Sbjct: 771 GRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDALSG-------------------EVRL 810

Query: 214 HQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTL 272
            + +   R   +       V      P+VT+ N     +TVI +  +DRP LL+D+   L
Sbjct: 811 PEAL-AKRTKPKKRARAFHVP-----PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRAL 864

Query: 273 TDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEG 329
           +D+   +    + T    A   FY+  + GL I++EA +  + + L AA+    +E 
Sbjct: 865 SDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEA 921

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER 311
           TV+ + + DRP LL DI   L D+   +    ++T    A   FY+   DG P+  E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 312 ERVIQCLEAAI 322
            R+ + LE A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 46/193 (23%)

Query: 233 VEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVC--------TLTDMQYVV-FHG 282
           V     +P V +        T + + + DRP+L F +VC        ++ D Q      G
Sbjct: 665 VRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRL-FAVVCAALSRRGLSIVDAQIFTTRDG 723

Query: 283 MVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRAS--------------- 327
                   A   F +   DG P+  +       + +EA +  +A                
Sbjct: 724 Y-------ALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFP 776

Query: 328 -------------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFY 374
                        +   LE+   DR GLL+ +  +F +  LS+  A+I+T G +V+D F 
Sbjct: 777 IPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFI 836

Query: 375 VTDVTGNPVDPKI 387
           VTD  G  ++ ++
Sbjct: 837 VTDADGQALNAEL 849

Length = 867

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 58.3 bits (142), Expect = 4e-11
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVI 87
          TV++V + ++ G+L  + +VL D+ L I  A IS+ G   +DVF V D DG+ + D E I
Sbjct: 1  TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 88 DYIQQRLET 96
            +++ LE 
Sbjct: 60 ARLEEALED 68

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 63.6 bits (155), Expect = 9e-11
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 34/183 (18%)

Query: 235 DKSSRPQVTVLNIEKDYTV-ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-AY 292
             S  P   +          + + + D+P L   +   L  +   V    VNT +   A 
Sbjct: 651 LSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVAL 710

Query: 293 QEFYIRHVDGLPISSEAERERVIQCLEAAIERRA-------------------------- 326
             F ++ + G P ++E   + ++Q L   +   A                          
Sbjct: 711 DTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVT 770

Query: 327 ------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 380
                  +   +E+   DR GLL+ + R   E  LSI+ A+I+T G K +D FYVTD+ G
Sbjct: 771 ILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG 830

Query: 381 NPV 383
             +
Sbjct: 831 LKL 833

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 48/189 (25%)

Query: 248 EKDYTVITMRSKDRPKLLFDI--VCTLT-----DMQ-YVVFHGMVNTGRTEAYQEFYIRH 299
            +  T +T+ + D P L   I   C        D + +    G        A   F+I+ 
Sbjct: 729 ARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGR-------ALDTFWIQD 781

Query: 300 VDGLPISSEAERERVIQCLEAAI--ERRASEGLE-------------------------- 331
             G          R+ + +E A+  E R  E L                           
Sbjct: 782 AFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASN 841

Query: 332 ----LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPK 386
               +E+   DR GLL D+TR   + +L+I  A I+T G +  D FYVTD+ G  + +  
Sbjct: 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEA 901

Query: 387 IIDSIRRQI 395
              +IRR +
Sbjct: 902 RQAAIRRAL 910

Length = 931

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
              T IE  G DRPGL  ++   L+DL+ N+ +A I T+ +RA  V +VTD   G  I +
Sbjct: 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITN 899

Query: 174 PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGI 206
             R + I+  L   L   +   +A+ +  P  +
Sbjct: 900 EARQAAIRRALLAALAEGEA--EARAARPPGAV 930

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184
           D+PGLF++V   LA L  +V +A++ T  D  A    V     G      +    + + L
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGL 736

Query: 185 FNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTV 244
            +VL G      AK   +      R RRL                          P+VT+
Sbjct: 737 VDVLAG-----LAKDPDTISARRARRRRLQHFAV--------------------PPRVTI 771

Query: 245 LN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGL 303
           LN   +  T++ +R+ DRP LL  +  TL ++   +    + T   +A   FY+  + GL
Sbjct: 772 LNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL 831

Query: 304 PISSEAERERVIQCLEAAIE 323
            ++ E E +R+++ L A++ 
Sbjct: 832 KLTDE-EEQRLLEVLAASVA 850

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
           LE+   DR GLL+ I RIF E  LS++ A+I+T+G +V+D F++TD    P+ DP++   
Sbjct: 817 LEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 391 IRRQI 395
           ++  I
Sbjct: 877 LQDAI 881

Length = 895

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 21/151 (13%)

Query: 52  NLVIKKAYISSDGGWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLETDASFAPSLRS-- 106
           ++V  + + + DG + +D F V++ DG  +   R   +   + + L       P  R   
Sbjct: 711 SIVDAQIFTTRDG-YALDTFIVLEPDGFPVEEDRRAALRGELIEAL-LSGKAQPPRRRRI 768

Query: 107 -----------SVGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153
                       V ++PT   + T +E    DRPGL + +  V ADL  ++ +A+I T  
Sbjct: 769 PRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG 828

Query: 154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184
           +R   V  VTD + G A+    R S ++ LL
Sbjct: 829 ERVEDVFIVTD-ADGQALNAELRQSLLQRLL 858

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 22/172 (12%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
           P  +ID    +  T + + + ++ G+  +V   L  ++L +  A + ++  G  +D F V
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVV 715

Query: 74  IDCDGKKIRD-------KEVIDYIQQRLETDASFAPSLRS------------SVGVMPT- 113
            D  G             + +  +   L  D     + R+             V ++ T 
Sbjct: 716 QDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTA 775

Query: 114 -EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
             + T +E    DRPGL + V   L +L  ++ +A+I T  ++A  V +VTD
Sbjct: 776 SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD 827

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 30/174 (17%)

Query: 240 PQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
             V +   +     +T+ + DR  LL      L   +  V    V +    A  EF +  
Sbjct: 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP 647

Query: 300 VDGLPISSEAERERVIQCLE------AAIERRASEGLE---------------------- 331
             G P  +   R+ + + L+      A +  R +                          
Sbjct: 648 RFGSPPDAALLRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDA 707

Query: 332 --LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
             LE+   DR GLL+ + R      + ++ A ++T+G  V D FYVT   G P+
Sbjct: 708 TVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761

Length = 774

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 49.0 bits (118), Expect = 6e-08
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKEL 183
           DRPGLF+ +   L  L  N+++A I+T  D  A     V D   G  I + +RL+ I+E 
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREA 68

Query: 184 LFNVL 188
           L + L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV IDN      TVI+V+  ++ G+L  + + L+D+NL I  A+I++ G   +DVF V
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 74  IDCDGKKIRDKEVIDYIQQRL 94
            D  G KI ++     I++ L
Sbjct: 890 TDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 377
           E+EL   DR GLL+ ++++F E +L++  A+I+TIG K +D F +T+
Sbjct: 785 EMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN 831

Length = 854

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 33/216 (15%)

Query: 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTG 168
           V P    T +     DRP LF+ VCA L+    ++V+A+I+T  +  A     V +   G
Sbjct: 678 VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDG 736

Query: 169 YAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK 228
           + +++ +R +   EL+  +L G       K        + R+ R   I            
Sbjct: 737 FPVEEDRRAALRGELIEALLSG-------KAQPPRRRRIPRKLRHFPI------------ 777

Query: 229 AVGRVEDKSSRPQVTVLNIE-KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 287
                      P+VT+L     D TV+ +R+ DRP LL  +     D+   +    + T 
Sbjct: 778 ----------PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827

Query: 288 RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323
                  F +   DG  +++E  R+ ++Q L  A+ 
Sbjct: 828 GERVEDVFIVTDADGQALNAE-LRQSLLQRLLEALL 862

Length = 867

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA--VVHVTDHS 166
           T +E    DRPGL +EV   LAD   N+ +    T  D+A    +V V D  
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEE 52

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDS 390
            LE+   DR GLL+++     +  ++I+    ST G K    F +  V         +++
Sbjct: 2   VLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVF-IVVVVDEEDLEAALEA 60

Query: 391 IRRQIG 396
           +++ +G
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV I N     AT+++V ++++ G+L +V + L ++ L I+ A I++ G    DVF V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 74  IDCDGKKIRDKEVIDYIQQRLETD 97
            D  G K+ D+E     +QRL   
Sbjct: 826 TDLFGLKLTDEE-----EQRLLEV 844

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 27  ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVIDCDGKKIRDK- 84
            T I + + ++H      +  ++ +NL I  A I +S   + +D + V+D DG+ I D  
Sbjct: 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP 763

Query: 85  EVIDYIQQRLETDASFAPSLRSSVG----------VMPTE---------EHTSIEFTGTD 125
             I+ I++ L           + +             PT+           T +E    D
Sbjct: 764 ARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPD 823

Query: 126 RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182
           RPGL + +  +  +   ++ NA+I T  +R   V  +TD +    + DP+  S +++
Sbjct: 824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQD 879

Length = 895

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 33/167 (19%)

Query: 252 TVITMRSKDRPKLLFDIVCTLTDMQYV-VFHGMVNTGRTE-AYQEFYIRHVDGLPISSEA 309
           T I + S DRP L F  VC   D + + V    + T R   A   F +   DG P+S + 
Sbjct: 702 TEIFIWSPDRPYL-FAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QD 759

Query: 310 ERERVIQCLEAAIE---------RRASEGLE--------------------LELCTEDRV 340
             + + + LE A+          RR    L                     +EL   D+ 
Sbjct: 760 RHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQP 819

Query: 341 GLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKI 387
           GLL+ + +IF +  +S+  A I+TIG +V+D F +       ++ ++
Sbjct: 820 GLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEEL 866

Length = 884

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 43.6 bits (104), Expect = 6e-06
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEI-STIGGKVKDTFYVTDVTGNPV-DPK 386
           G E+ + T DR GL + I     +  L+I  A I +T  G   DTF V D  G P+ + +
Sbjct: 1   GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERE 60

Query: 387 IIDSIRRQI 395
            +  IR  +
Sbjct: 61  RLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTD 377
           L+L   DR GLL D+T +  E  L+I+R ++ST   G+V D F++TD
Sbjct: 3   LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD 49

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           +  +G DRPGL ++V +VLA+   N+ + E  T  D   A + + 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV 45

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 3   DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
           D+Y  +I+R  P          +V I N+     TV+++ + ++ G+L ++ ++  + +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL 840

Query: 54  VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
            ++ A I++ G    DVF + D D + + D ++   +Q  +
Sbjct: 841 SLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
           P V++        T I + S ++  +   V   L+  NL +  A I +S  G  MD F V
Sbjct: 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIV 748

Query: 74  IDCDGKKI---RDKEVIDYIQQRLETDASFAPSLR------------SSVGVMPTEEH-- 116
           ++ DG  +   R + +   ++Q L   +   P  R            + V  +PT     
Sbjct: 749 LEPDGSPLSQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRR 808

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA 156
           + +E    D+PGL + V  + ADL  ++  A I T  +R 
Sbjct: 809 SYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERV 848

Length = 884

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 377
           L +   DR GLL  I R+  E+ +S+  A+I+T+G +V+DTF +  
Sbjct: 789 LSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG 834

Length = 856

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV I      D TV++V ++++ G+L  +  V  D+ L +  A I++ G    DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 74  IDCDGKKIRDKEVIDYIQQRLET 96
            D DG+ +  +     +Q+ LE 
Sbjct: 838 TDADGQALNAELRQSLLQRLLEA 860

Length = 867

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
             V I N      T I +   ++  + L+V+  +    L I  A I +S  G+ +D F V
Sbjct: 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIV 724

Query: 74  IDCDGKKI---RDKEVIDYIQQRLETDASFAPSLR-----------SSVGVMPTE--EHT 117
            + +GK +   R +++   + + L T+     +L            + V  +  E  E T
Sbjct: 725 TELNGKLLEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQT 784

Query: 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA 156
            +E    DR GL ++V  V ++L+ N++NA+I T  ++A
Sbjct: 785 EMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKA 823

Length = 854

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 341 GLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDSIRRQIG 396
           G+L +  ++  +  L I +A IS+ GG   D F+VTD  GN + D  +I  I + +G
Sbjct: 13  GILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 289 TEAYQEFYIRHVDGLPISSEAE----RERVIQCLEAAIERRASEGLELELCTEDRVGLLS 344
             AY ++++R      I+  AE           L      R S G E+ +   D+ GL +
Sbjct: 625 LRAYDDYFLRFTHK-EIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFA 683

Query: 345 DITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVD 384
            +       SLS+  A+++T   G   DTF V D+ G+P  
Sbjct: 684 KVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPA 724

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 391
           L +   DR GLL+ +  +  E  ++I   E  T G   +   ++  V G+    K+++++
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFI-VVDGDGDLEKLLEAL 59

Query: 392 R 392
            
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 323 ERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI-STIGGKVKDTFYVTDVTGN 381
            R  S G E+ +   DR  L + +        LSI  A+I +T  G   DTF V +  G 
Sbjct: 678 VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF 737

Query: 382 PVDPKIIDSIRRQIGHTKLQVKRSTILAPKPPK 414
           PV+     ++R ++    L  K       + P+
Sbjct: 738 PVEEDRRAALRGELIEALLSGKAQPPRRRRIPR 770

Length = 867

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 37/200 (18%)

Query: 125 DRPGLFSEVCAVLADLH-CNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKEL 183
           DR GL S+   VLA LH   V +A + +H+  A     V+    G    D   L      
Sbjct: 608 DRRGLLSKAAGVLA-LHRLRVRSASVRSHDGVAVLEFVVSPRF-GSPP-DAALLR----- 659

Query: 184 LFNVLRGYDDFRKAKT-SLSPPGIMNR-ERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQ 241
                    D R+A    L    ++ R   R       +     V      V   ++ P+
Sbjct: 660 --------QDLRRALDGDLD---VLARLAAR-------EAAAAAV-----PVRRPAAPPR 696

Query: 242 VTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300
           V  L+    D TV+ +R+ DRP LL  +   L      V    V T   +    FY+   
Sbjct: 697 VLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA 756

Query: 301 DGLPISSEAERERVIQCLEA 320
            G P++    R  V Q + A
Sbjct: 757 AGGPLA--DARAAVEQAVLA 774

Length = 774

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 315 IQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFY 374
           ++  E+A  RR      + L   DR GLL+D+  + R   L +  A I+T G + +D F 
Sbjct: 786 VEFSESAGGRRT----RISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQ 841

Query: 375 VTDVTGNPV 383
           +TD    P+
Sbjct: 842 ITDEHDRPL 850

Length = 869

>gnl|CDD|205914 pfam13740, ACT_6, ACT domain

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           I  TG DRPGL + +  VLA+  CN++++            + V+
Sbjct: 5   ITATGPDRPGLTASLTRVLAEHGCNILDSRQAVIGGELTLGMLVS 49

ACT domains bind to amino acids and regulate associated enzyme domains. Length = 76

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVI 87
          TV+++ ++++ G+L  V +VL ++ L I  A I++ G    DVF V D DG+   D E  
Sbjct: 1  TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQ 59

Query: 88 DYIQQRLET 96
          + ++  L  
Sbjct: 60 EALRAALGE 68

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 36 NKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
          ++ G+  ++   L+ + L I  A I ++  G+ +D F V+D DG+ I ++E +  I++ L
Sbjct: 10 DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69

Query: 95 E 95
          E
Sbjct: 70 E 70

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL 177
            +E    DR GL S+V  V  +    V  AEI T  D A  V +VTD + G  + DPK +
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTI 60

Query: 178 STIKE 182
             +++
Sbjct: 61  EAVRQ 65

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 41/204 (20%)

Query: 115 EHTSIEFTG--------TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHS 166
           E T  EF G         D+   F+   A +  L+ N+ +A I T + +     ++    
Sbjct: 695 ETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD 754

Query: 167 TGYAIKD-PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDY 223
            G  I D P R+  I+E L   LR  DD+         P I+ R   R+L    F     
Sbjct: 755 DGEPIGDNPARIEQIREGLTEALRNPDDY---------PTIIQRRVPRQLKHFAFP---- 801

Query: 224 ERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHG 282
                            QVT+ N  ++  TV+ + + DRP LL  I     +    + + 
Sbjct: 802 ----------------TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA 845

Query: 283 MVNTGRTEAYQEFYIRHVDGLPIS 306
            + T        F+I   D  P+S
Sbjct: 846 KIATLGERVEDVFFITDADNQPLS 869

Length = 895

>gnl|CDD|153200 cd04928, ACT_TyrKc, Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVI 74
          I   + +K  +L Q+  +L D+ L I +A+  S+D G  +D+F V 
Sbjct: 4  ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 68

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 44/168 (26%), Positives = 64/168 (38%), Gaps = 25/168 (14%)

Query: 16  RVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVI 74
           R V DN    DA  + V S ++ G+   ++  L+     I +A +  +      DVF V+
Sbjct: 683 RAVPDN----DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVL 738

Query: 75  DCDGKKIRDKEVID-YIQQRLETDAS-----------------FAPSLRSSVGVMPTEEH 116
             D     D + +   ++Q L  D                   FAP  R           
Sbjct: 739 PQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAP--RVEFSESAGGRR 796

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
           T I     DRPGL ++V  VL   H  V +A I T  +RA     +TD
Sbjct: 797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD 844

Length = 869

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 17/85 (20%), Positives = 32/85 (37%)

Query: 304 PISSEAERERVIQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 363
           P+            +   I       +E+ +   DR GLLS    +   + L ++ A + 
Sbjct: 574 PLDPAQLALAADGGVHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVR 633

Query: 364 TIGGKVKDTFYVTDVTGNPVDPKII 388
           +  G     F V+   G+P D  ++
Sbjct: 634 SHDGVAVLEFVVSPRFGSPPDAALL 658

Length = 774

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK05007	884	PII uridylyl-transferase; Provisional	99.95
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK05007	884	PII uridylyl-transferase; Provisional	99.95
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
PRK03059	856	PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
PRK03381	774	PII uridylyl-transferase; Provisional	99.93
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.91
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
PRK03381	774	PII uridylyl-transferase; Provisional	99.91
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.8
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.8
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.75
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.75
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.71
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.67
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.67
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.62
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.58
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.58
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.58
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.57
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.55
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.53
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.52
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.47
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.38
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.31
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.3
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.29
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.27
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.22
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.21
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.18
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.87
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.84
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.62
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.61
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.46
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.45
COG4747	142	ACT domain-containing protein [General function pr	98.38
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.32
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.31
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.29
COG4747	142	ACT domain-containing protein [General function pr	98.27
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.24
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.23
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.11
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	98.09
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.06
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.05
PRK00194	90	hypothetical protein; Validated	98.02
PRK07431	587	aspartate kinase; Provisional	98.02
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	98.0
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.98
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.97
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.94
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.92
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.78
PRK00194	90	hypothetical protein; Validated	97.77
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.69
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.68
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.67
COG3830	90	ACT domain-containing protein [Signal transduction	97.66
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.54
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.4
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.39
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.35
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.35
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.32
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.26
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.21
COG3830	90	ACT domain-containing protein [Signal transduction	97.16
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.15
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.09
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.07
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.02
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.99
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.98
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.97
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.96
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.94
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.94
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.92
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.91
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.9
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.87
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.86
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.82
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.79
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.78
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.75
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.75
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.7
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.69
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.65
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.63
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.6
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.55
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.54
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.52
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.51
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.42
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.42
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.39
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.36
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.35
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.35
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.25
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.21
PRK07431	587	aspartate kinase; Provisional	96.15
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.04
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.0
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.0
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	95.98
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.9
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.88
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	95.86
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.85
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.83
PRK08577	136	hypothetical protein; Provisional	95.82
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.79
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.71
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.64
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.63
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.63
PRK08577	136	hypothetical protein; Provisional	95.61
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.58
PRK04435	147	hypothetical protein; Provisional	95.55
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.43
cd02116	60	ACT ACT domains are commonly involved in specifica	95.34
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.24
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.2
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.1
PRK07334	403	threonine dehydratase; Provisional	95.03
PRK04435	147	hypothetical protein; Provisional	94.98
cd02116	60	ACT ACT domains are commonly involved in specifica	94.65
PRK06635	404	aspartate kinase; Reviewed	94.38
PRK06635	404	aspartate kinase; Reviewed	94.31
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	94.16
PRK07334	403	threonine dehydratase; Provisional	94.05
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	94.04
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.04
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.0
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.89
PRK06291	465	aspartate kinase; Provisional	93.73
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.44
PRK08210	403	aspartate kinase I; Reviewed	93.3
PRK11899	279	prephenate dehydratase; Provisional	93.28
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.27
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.26
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.23
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.19
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	93.03
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	92.96
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.33
COG1707	218	ACT domain-containing protein [General function pr	92.24
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.08
COG2150	167	Predicted regulator of amino acid metabolism, cont	91.94
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	91.93
PRK06291	465	aspartate kinase; Provisional	91.84
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.56
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	91.5
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.48
PRK09034	454	aspartate kinase; Reviewed	91.36
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.3
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	91.19
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	90.94
PRK08210	403	aspartate kinase I; Reviewed	90.78
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	90.61
PRK09034	454	aspartate kinase; Reviewed	90.6
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	90.39
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	90.37
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	90.29
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.0
COG1707	218	ACT domain-containing protein [General function pr	89.89
PRK06382	406	threonine dehydratase; Provisional	89.49
PLN02551	521	aspartokinase	89.17
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.99
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	88.98
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	88.89
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	88.88
PRK06349	426	homoserine dehydrogenase; Provisional	88.57
PRK08818	370	prephenate dehydrogenase; Provisional	88.47
PRK06545	359	prephenate dehydrogenase; Validated	88.42
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	88.07
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.9
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	87.66
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.41
PRK06545	359	prephenate dehydrogenase; Validated	87.32
PRK11899	279	prephenate dehydratase; Provisional	87.05
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	86.99
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	86.94
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	86.83
PRK14630	143	hypothetical protein; Provisional	86.73
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	86.03
PRK09181	475	aspartate kinase; Validated	85.93
PRK09181	475	aspartate kinase; Validated	85.88
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	85.6
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	85.44
PRK14646	155	hypothetical protein; Provisional	85.14
PRK14636	176	hypothetical protein; Provisional	84.86
COG2150	167	Predicted regulator of amino acid metabolism, cont	84.7
PRK12483	521	threonine dehydratase; Reviewed	84.61
PRK14634	155	hypothetical protein; Provisional	84.47
PRK06382	406	threonine dehydratase; Provisional	84.42
PRK08818	370	prephenate dehydrogenase; Provisional	84.37
PRK08198	404	threonine dehydratase; Provisional	83.82
PLN02317	382	arogenate dehydratase	83.73
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	83.15
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	82.86
PLN02551	521	aspartokinase	82.62
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	82.39
PRK14645	154	hypothetical protein; Provisional	82.2
PRK06349	426	homoserine dehydrogenase; Provisional	82.03
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	81.94
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	81.89
PRK09224	504	threonine dehydratase; Reviewed	81.43
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	81.33
PRK09084	448	aspartate kinase III; Validated	81.03
PRK08198	404	threonine dehydratase; Provisional	80.81
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	80.25

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.4e-27  Score=263.54  Aligned_cols=161  Identities=24%  Similarity=0.391  Sum_probs=145.4

Q ss_pred             CCCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEccCCCCCCCHHHHHHH
Q 013535          237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERV  314 (441)
Q Consensus       237 ~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~F~V~~~~g~~i~~~~~~~~l  314 (441)
                      ..+|.|.+++ .+.++++|+|+++||||||++|+++|+.+|+||++|+|.| .+|+++|+|+|++.+|.++. ++++++|
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l  740 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence            3578899999 8899999999999999999999999999999999999998 58999999999999999885 4688999


Q ss_pred             HHHHHHHHhh---------hc-------------------CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535          315 IQCLEAAIER---------RA-------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  366 (441)
Q Consensus       315 ~~~L~~~L~~---------r~-------------------~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g  366 (441)
                      ++.|.++|..         +.                   ...|+|||.|.|||||||+|+++|.++|++|++|||+|+|
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g  820 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG  820 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence            9999888731         00                   0148999999999999999999999999999999999999


Q ss_pred             CeeEEEEEEEcCCCCCCChHHHHHHHHHhccc
Q 013535          367 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHT  398 (441)
Q Consensus       367 ~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~  398 (441)
                      ++|+|+|||+|.+|.|++++.+++|+++|.++
T Consensus       821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~  852 (854)
T PRK01759        821 EKAEDFFILTNQQGQALDEEERKALKSRLLSN  852 (854)
T ss_pred             ceEEEEEEEECCCCCcCChHHHHHHHHHHHHH
Confidence            99999999999999999876669999998874

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=3.5e-27  Score=263.08  Aligned_cols=161  Identities=24%  Similarity=0.396  Sum_probs=146.7

Q ss_pred             CCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHH
Q 013535          238 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVI  315 (441)
Q Consensus       238 ~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~  315 (441)
                      .+|.|.+++ .+.++++|+|+++||||||++|+++|+.+|+||++|+|+|. +|+++|+|+|++.+|.++. ++++++|+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence            578899999 88899999999999999999999999999999999999998 5699999999999999885 46889999


Q ss_pred             HHHHHHHhhh---------c--------------------CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535          316 QCLEAAIERR---------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  366 (441)
Q Consensus       316 ~~L~~~L~~r---------~--------------------~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g  366 (441)
                      +.|.++|..+         .                    +..|+|||.|.|||||||+|+++|.++|++|++|||+|+|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            9999887321         0                    1147999999999999999999999999999999999999


Q ss_pred             CeeEEEEEEEcCCCCCCChHHHHHHHHHhcccc
Q 013535          367 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK  399 (441)
Q Consensus       367 ~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~  399 (441)
                      ++|+|+|||++.+|.|++++.+++|+++|..++
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l  878 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEAL  878 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999888899999998855

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=9.4e-27  Score=258.80  Aligned_cols=177  Identities=24%  Similarity=0.337  Sum_probs=151.2

Q ss_pred             hcCCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCch---HH
Q 013535           11 RMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EV   86 (441)
Q Consensus        11 ~~~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~---~~   86 (441)
                      ...+|.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.++.++   .+
T Consensus       661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l  740 (854)
T PRK01759        661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQL  740 (854)
T ss_pred             cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHH
Confidence            3456889999999999999999999999999999999999999999999998 8999999999999999887542   24


Q ss_pred             HHHHHHHhcccCCCCC-------------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535           87 IDYIQQRLETDASFAP-------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (441)
Q Consensus        87 ~~~L~~~L~~~~~~~~-------------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~  153 (441)
                      .+.|+++|.+......             ++.+.++++.+..+|+|+|.++||||||++|+++|.++|++|++|+|.|.|
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g  820 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG  820 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence            4666666665432110             122334457888999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       154 ~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ++++|+|||++ ..|.++.++++ ++|+++|.++|.
T Consensus       821 erv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l~  854 (854)
T PRK01759        821 EKAEDFFILTN-QQGQALDEEER-KALKSRLLSNLS  854 (854)
T ss_pred             ceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhC
Confidence            99999999999 68999987666 999999988763

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=7.2e-26  Score=252.57  Aligned_cols=176  Identities=22%  Similarity=0.313  Sum_probs=152.0

Q ss_pred             CCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCch---HHHH
Q 013535           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EVID   88 (441)
Q Consensus        13 ~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~---~~~~   88 (441)
                      .+|.|.+++.++.++++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.+++++   ++.+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~  766 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRK  766 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999997 6789999999999999887542   2456


Q ss_pred             HHHHHhcccCCCC------C--------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC
Q 013535           89 YIQQRLETDASFA------P--------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND  154 (441)
Q Consensus        89 ~L~~~L~~~~~~~------~--------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~  154 (441)
                      .|+++|.+.....      +        ++.+.++++.+..+|+|+|.+.||||||++|+++|.++|++|++|+|.|.|+
T Consensus       767 ~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge  846 (884)
T PRK05007        767 ALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE  846 (884)
T ss_pred             HHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc
Confidence            6667776542111      0        1223344578899999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535          155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (441)
Q Consensus       155 ~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (441)
                      +++|+|||++ ..|.+++ +++.+.|+++|.++|..
T Consensus       847 ra~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        847 RVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             eEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999 5889996 77889999999999865

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=3e-25  Score=247.59  Aligned_cols=179  Identities=22%  Similarity=0.383  Sum_probs=151.1

Q ss_pred             CCCEEEEeeCCC---CCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCc-hH--
Q 013535           13 NPPRVVIDNNTC---ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRD-KE--   85 (441)
Q Consensus        13 ~~~~V~v~~~~~---~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~-~~--   85 (441)
                      +.|.|.++..+.   .++++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|.++.. ++  
T Consensus       687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            467888888776   58999999999999999999999999999999999986 789999999999999887532 22  


Q ss_pred             --HHHHHHHHhcccCCCC-------------C--CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEE
Q 013535           86 --VIDYIQQRLETDASFA-------------P--SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus        86 --~~~~L~~~L~~~~~~~-------------~--~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                        +.+.|.++|.+.....             .  ++.+.+.++++.+.|+|+|+++||||||++|+++|+.+|+||++|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence              4456666666543211             0  1122234477789999999999999999999999999999999999


Q ss_pred             EEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 013535          149 IWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  192 (441)
Q Consensus       149 i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (441)
                      |.|.++++.|+|||++ .+|.++.+++++++|+++|.++|.+..
T Consensus       847 I~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~~  889 (895)
T PRK00275        847 IATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDARN  889 (895)
T ss_pred             EEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999 588999888899999999999997654

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=8.1e-25  Score=244.18  Aligned_cols=182  Identities=25%  Similarity=0.340  Sum_probs=156.7

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCC-CHHHHHHHHHHHHHhhcCC
Q 013535          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIK-DPKRLSTIKELLFNVLRGY  191 (441)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~-~~~~~~~l~~~L~~~L~~~  191 (441)
                      .+.++|.|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.++. +++++++|++.|.++|.|+
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            489999999999999999999999999999999999875 788999999999 5788754 4689999999999999987


Q ss_pred             CcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHH
Q 013535          192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVC  270 (441)
Q Consensus       192 ~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~  270 (441)
                      .+..   .        .+.+|....      .          ..+..+|.|.+++ .+.++|+|+|+++||||||++|++
T Consensus       781 ~~~~---~--------~~~~~~~~~------~----------~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~  833 (895)
T PRK00275        781 DDYP---T--------IIQRRVPRQ------L----------KHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR  833 (895)
T ss_pred             Cccc---h--------hhhhhhhhh------c----------cCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHH
Confidence            5311   1        111221100      0          1235679999999 888999999999999999999999


Q ss_pred             HHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 013535          271 TLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  323 (441)
Q Consensus       271 ~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~  323 (441)
                      +|+.+|+||++|+|.|.+++++|+|||++.+|.++.++.++++|+++|.++|.
T Consensus       834 ~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~  886 (895)
T PRK00275        834 IFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD  886 (895)
T ss_pred             HHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999888899999999998874

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=9.5e-25  Score=242.24  Aligned_cols=175  Identities=24%  Similarity=0.317  Sum_probs=146.5

Q ss_pred             CCCEEEEee-CCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCch-HHHHH
Q 013535           13 NPPRVVIDN-NTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK-EVIDY   89 (441)
Q Consensus        13 ~~~~V~v~~-~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~-~~~~~   89 (441)
                      +.|.|.+.. .+..++++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.+...+ ++.+.
T Consensus       675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~  754 (869)
T PRK04374        675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA  754 (869)
T ss_pred             CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence            467777765 67778999999999999999999999999999999999997 8899999999999887643222 35677


Q ss_pred             HHHHhcccCCCC-------C--------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC
Q 013535           90 IQQRLETDASFA-------P--------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND  154 (441)
Q Consensus        90 L~~~L~~~~~~~-------~--------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~  154 (441)
                      |+++|.+.....       +        ++.+.+.++.+.+.|+|+|.+.||||||++||++|+++|+||++|+|+|.++
T Consensus       755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~  834 (869)
T PRK04374        755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGE  834 (869)
T ss_pred             HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCC
Confidence            788887743210       0        1112233467789999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       155 ~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ++.|+|||++ .+|.++.++++ +.|+++|.++|.
T Consensus       835 ~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        835 RAEDQFQITD-EHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             EEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence            9999999999 58888876666 999999998885

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.1e-24  Score=239.96  Aligned_cols=173  Identities=18%  Similarity=0.295  Sum_probs=143.6

Q ss_pred             cCCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCch----HH
Q 013535           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK----EV   86 (441)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~----~~   86 (441)
                      .+.|.|.+...+..+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ..++    ++
T Consensus       663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i  741 (856)
T PRK03059        663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV  741 (856)
T ss_pred             CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence            346888899999999999999999999999999999999999999999986 88999999999998776 3232    35


Q ss_pred             HHHHHHHhcccCCCC-------C--------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535           87 IDYIQQRLETDASFA-------P--------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus        87 ~~~L~~~L~~~~~~~-------~--------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      .+.|+++|.+.....       +        ++.+.+.++++.+.|+|+|+++||||||++||++|+.+|+||++|+|+|
T Consensus       742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T  821 (856)
T PRK03059        742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT  821 (856)
T ss_pred             HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence            566677776643211       0        0111233467779999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          152 HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       152 ~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      .++++.|+|||++    .++.+++++++|++.|.++|.
T Consensus       822 ~~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        822 LGERVEDTFLIDG----SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             cCCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999965    234578899999999988774

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=1.4e-24  Score=242.74  Aligned_cols=163  Identities=26%  Similarity=0.347  Sum_probs=147.0

Q ss_pred             CCCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEccCCCCCCCHHHHHHH
Q 013535          237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERV  314 (441)
Q Consensus       237 ~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~F~V~~~~g~~i~~~~~~~~l  314 (441)
                      ...|.|.+++ ...++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++.+|.++.+++++++|
T Consensus       653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i  732 (850)
T TIGR01693       653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL  732 (850)
T ss_pred             CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence            3468899988 6689999999999999999999999999999999999995 5899999999999999999888789999


Q ss_pred             HHHHHHHHhh-----------h-cC--------------------CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEE
Q 013535          315 IQCLEAAIER-----------R-AS--------------------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI  362 (441)
Q Consensus       315 ~~~L~~~L~~-----------r-~~--------------------~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i  362 (441)
                      +..|.++|..           + .+                    ..|+|+|.+.||||||++|+++|+++|+||++|+|
T Consensus       733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i  812 (850)
T TIGR01693       733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI  812 (850)
T ss_pred             HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence            9999888731           0 00                    14899999999999999999999999999999999


Q ss_pred             EeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcccc
Q 013535          363 STIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK  399 (441)
Q Consensus       363 ~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~  399 (441)
                      +|+|++++|+|||++..|.|+++++++.|+++|.+++
T Consensus       813 ~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       813 TTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             EecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999998888899999988754

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=3.5e-24  Score=236.12  Aligned_cols=169  Identities=20%  Similarity=0.218  Sum_probs=143.6

Q ss_pred             CCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHH
Q 013535           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (441)
Q Consensus        13 ~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~   92 (441)
                      .+|.|.+++.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.+++|.+...+++.+.|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence            67889999888 89999999999999999999999999999999999999999999999999988875544457788888


Q ss_pred             HhcccCCC--C---C--C----------cceee--eecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535           93 RLETDASF--A---P--S----------LRSSV--GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (441)
Q Consensus        93 ~L~~~~~~--~---~--~----------~~~~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~  153 (441)
                      +|.+....  .   .  .          .+..+  .++.+.+.|+|+|.++||||||++|+++|+++|+||++|+|.|.+
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g  744 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG  744 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            88875321  0   0  0          01122  336667899999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535          154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (441)
Q Consensus       154 ~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~  185 (441)
                      +++.|+|||++ .+|.++.++  .+.|+++|.
T Consensus       745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence            99999999999 589999754  678877764

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.9e-24  Score=228.92  Aligned_cols=163  Identities=26%  Similarity=0.392  Sum_probs=143.6

Q ss_pred             CCCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHH
Q 013535          237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERV  314 (441)
Q Consensus       237 ~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l  314 (441)
                      ...|.|.+.+ ...+.++|+|+++|+|.||+.+++++...|+||++|+|+|+ +|+++|+|+|.+++|.++. +++...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            4678888888 77789999999999999999999999999999999999997 7899999999999999988 4577777


Q ss_pred             HHHHHHHHhh---------hc----------C----------CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535          315 IQCLEAAIER---------RA----------S----------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI  365 (441)
Q Consensus       315 ~~~L~~~L~~---------r~----------~----------~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~  365 (441)
                      +..|.+.+..         +.          |          +.++|||++.||||||++|+++|++++++|++|||+|.
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            7777766531         10          1          14799999999999999999999999999999999999


Q ss_pred             CCeeEEEEEEEcCCCCCCChHHHHHHHHHhccccc
Q 013535          366 GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKL  400 (441)
Q Consensus       366 g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~  400 (441)
                      ||+|+|+|||++..|.+++++..+.+.+.+.+++.
T Consensus       828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~  862 (867)
T COG2844         828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALL  862 (867)
T ss_pred             cccceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998777788787777554

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.1e-23  Score=233.88  Aligned_cols=180  Identities=22%  Similarity=0.253  Sum_probs=152.0

Q ss_pred             cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      .+..+.++|.|+++|+||||++||++|+.+|+||++|+|+| .+|.+.|+|+|.+ ..|.+   +++++++++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHc
Confidence            55668999999999999999999999999999999999998 5889999999999 45653   3568899999999999


Q ss_pred             CCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHHH
Q 013535          190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI  268 (441)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i  268 (441)
                      |+....    .+.       .++...   +.             ..+..+|.|.+++ .+.++|+|+|+++||||||++|
T Consensus       761 ~~~~~~----~~~-------~~~~~~---~~-------------~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~I  813 (869)
T PRK04374        761 GDLQKV----RPA-------RRAVPR---QL-------------RHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADV  813 (869)
T ss_pred             CCCCcc----ccc-------cccCcc---cc-------------cCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHH
Confidence            865311    011       011100   00             1345789999999 8889999999999999999999


Q ss_pred             HHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 013535          269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (441)
Q Consensus       269 ~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L  322 (441)
                      +++|+.+|+||++|+|+|.+++++|+|||++.+|.++.++++ +.|+++|.+.|
T Consensus       814 a~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l  866 (869)
T PRK04374        814 AHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACL  866 (869)
T ss_pred             HHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            999999999999999999999999999999999998877655 99999998776

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.92  E-value=2.5e-23  Score=232.60  Aligned_cols=185  Identities=26%  Similarity=0.381  Sum_probs=157.2

Q ss_pred             cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE-eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~-T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ....+.|+|+|+++||||||++||++|+.+|+||++|+|+ |.++++.|+|+|++ .+|.++.+++++++|++.|.++|.
T Consensus       663 ~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L~  741 (850)
T TIGR01693       663 TRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVLA  741 (850)
T ss_pred             cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHHc
Confidence            4457999999999999999999999999999999999999 56899999999999 588888888889999999999998


Q ss_pred             CCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHHH
Q 013535          190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI  268 (441)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i  268 (441)
                      +.....   ..+.        .|.. ..   +          +...+..+|.|.|+| .++.+|+|+|.|+|||||+++|
T Consensus       742 ~~~~~~---~~~~--------~~~~-~~---~----------~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i  796 (850)
T TIGR01693       742 GLAKDP---DTIS--------ARRA-RR---R----------RLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARV  796 (850)
T ss_pred             CCCccc---cccc--------cccC-Cc---c----------cccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHH
Confidence            864211   0011        1100 00   0          001345789999999 9999999999999999999999


Q ss_pred             HHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 013535          269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (441)
Q Consensus       269 ~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L  322 (441)
                      +++|+++|+||.+|+|.|.++++.|+|+|++..|.++.+ .+.+.|+++|.+.|
T Consensus       797 ~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       797 GRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987 68899999998764

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=2.4e-23  Score=234.19  Aligned_cols=179  Identities=25%  Similarity=0.368  Sum_probs=151.3

Q ss_pred             CCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchH----HH
Q 013535           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE----VI   87 (441)
Q Consensus        13 ~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~----~~   87 (441)
                      .++.|.+++.+..++++|+|+++|+||||++||++|+.+||||++|+|+| .+|+++|+|+|.+++|.++.+++    +.
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            45788899998889999999999999999999999999999999999997 88999999999998887765543    34


Q ss_pred             HHHHHHhcccCCCC--------C---------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE
Q 013535           88 DYIQQRLETDASFA--------P---------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (441)
Q Consensus        88 ~~L~~~L~~~~~~~--------~---------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~  150 (441)
                      +.|++++.+...+.        +         ++.+.+.++++...|+|+|.++||||||++|+++|+++|+||++|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            45555554432110        0         011223446778899999999999999999999999999999999999


Q ss_pred             eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 013535          151 THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  192 (441)
Q Consensus       151 T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (441)
                      |.++++.|+|+|++ .+|.++.+++++++|+++|.++|.++.
T Consensus       878 T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~~  918 (931)
T PRK05092        878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGE  918 (931)
T ss_pred             EcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999 589999888899999999999998754

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=5.5e-23  Score=231.32  Aligned_cols=189  Identities=27%  Similarity=0.441  Sum_probs=160.6

Q ss_pred             eecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       109 ~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      ...+..+.++|+|+++||||||++||++|+.+|+||++|+|+| .++.+.|+|+|++ .+|.++.+++++++|++.|..+
T Consensus       725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~  803 (931)
T PRK05092        725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDA  803 (931)
T ss_pred             EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHH
Confidence            3456678999999999999999999999999999999999998 5788999999999 5788777788999999999999


Q ss_pred             hcCCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHH
Q 013535          188 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLF  266 (441)
Q Consensus       188 L~~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~  266 (441)
                      +.+...+.   .        .+.+|....    +  .        ...+..+|.|.++| .+.++|+|.|+++||||||+
T Consensus       804 l~~~~~~~---~--------~~~~r~~~~----~--~--------~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~  858 (931)
T PRK05092        804 LSGEVRLP---E--------ALAKRTKPK----K--R--------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLY  858 (931)
T ss_pred             HcCCCCCc---c--------ccccccCcc----c--c--------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHH
Confidence            98865311   0        111110000    0  0        01335679999999 88899999999999999999


Q ss_pred             HHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 013535          267 DIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  323 (441)
Q Consensus       267 ~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~  323 (441)
                      +|+++|+++|+||.+|+|.|.++++.|+|+|++.+|.++.++..++.|+++|.+.|.
T Consensus       859 ~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        859 DLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             HHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999888889999999998884

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=4.1e-23  Score=229.65  Aligned_cols=181  Identities=19%  Similarity=0.279  Sum_probs=150.2

Q ss_pred             ecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535          110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (441)
Q Consensus       110 ~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (441)
                      ..+..+.++|.|+++||||||++||++|+.+|+||++|+|+| .+|.+.|+|+|.+ ..|. ..+++++++|++.|.++|
T Consensus       672 ~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l  749 (856)
T PRK03059        672 LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERL  749 (856)
T ss_pred             ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHH
Confidence            356678999999999999999999999999999999999987 5789999999999 4555 556789999999999999


Q ss_pred             cCCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHH
Q 013535          189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD  267 (441)
Q Consensus       189 ~~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~  267 (441)
                      .|+.+..     .      ...+|...   +   .          ..+..+|.|.+++ .+.++|+|+|+++||||||++
T Consensus       750 ~~~~~~~-----~------~~~~~~~~---~---~----------~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~  802 (856)
T PRK03059        750 AEQAPLP-----E------PSKGRLSR---Q---V----------KHFPITPRVDLRPDERGQYYILSVSANDRPGLLYA  802 (856)
T ss_pred             cCCCCcc-----h------hhcccccc---c---c----------cCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHH
Confidence            9875311     0      01122100   0   0          1335678999999 888999999999999999999


Q ss_pred             HHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 013535          268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (441)
Q Consensus       268 i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L  322 (441)
                      |+++|+.+|+||++|+|+|.+|+++|+|||.+   .++.+++++++|+++|.+.|
T Consensus       803 Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        803 IARVLAEHRVSVHTAKINTLGERVEDTFLIDG---SGLSDNRLQIQLETELLDAL  854 (856)
T ss_pred             HHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999953   33556678999999998765

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.3e-23  Score=220.86  Aligned_cols=177  Identities=24%  Similarity=0.358  Sum_probs=145.4

Q ss_pred             cCCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchH---HH
Q 013535           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE---VI   87 (441)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~---~~   87 (441)
                      ..+|.|.++.....+.++|+||++|+|.||+.+|+++...|+||++|+|+| .+|+++|+|+|++++|.++....   +.
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~  748 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALR  748 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHH
Confidence            677999999999999999999999999999999999999999999999996 88999999999999998876432   23


Q ss_pred             HHHHHHhcccCCCCC--------------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535           88 DYIQQRLETDASFAP--------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (441)
Q Consensus        88 ~~L~~~L~~~~~~~~--------------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~  153 (441)
                      +.+.+++......++              ++.+.+.+..+...|+++|.+.||||||+.++++|+++|++|++|+|+|.|
T Consensus       749 ~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~G  828 (867)
T COG2844         749 GELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG  828 (867)
T ss_pred             HHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecccc
Confidence            444444433322111              111223336667899999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535          154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (441)
Q Consensus       154 ~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (441)
                      ++++|+|+|++ ..|.++. ++..+.+.+.|.+++..
T Consensus       829 ErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~~  863 (867)
T COG2844         829 ERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALLP  863 (867)
T ss_pred             ccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhcc
Confidence            99999999999 5888884 55667777777666654

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=7.7e-23  Score=225.51  Aligned_cols=178  Identities=25%  Similarity=0.280  Sum_probs=145.4

Q ss_pred             ecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       110 ~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ..+ .+.++|+|+++||||||++||++|+.+|+||++|+|+|.+|.+.|+|+|.+ ..|.+.    .++++++.|.++|.
T Consensus       594 ~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~~L~  667 (774)
T PRK03381        594 PAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRRALD  667 (774)
T ss_pred             eCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHHHHc
Confidence            355 799999999999999999999999999999999999999999999999999 466543    25899999999999


Q ss_pred             CCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHHH
Q 013535          190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI  268 (441)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i  268 (441)
                      ++.+..   ..+.        +|.....+  .  .        ...+..++.|.+++ .+.++++|+|+++||||||++|
T Consensus       668 ~~~~~~---~~~~--------~~~~~~~~--~--~--------~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~I  724 (774)
T PRK03381        668 GDLDVL---ARLA--------AREAAAAA--V--P--------VRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARL  724 (774)
T ss_pred             CCCchh---hhhh--------cccccccc--c--c--------cccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHH
Confidence            854311   0111        11000000  0  0        01335678999999 8889999999999999999999


Q ss_pred             HHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHH
Q 013535          269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL  318 (441)
Q Consensus       269 ~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L  318 (441)
                      +++|+++|+||.+|+|.|.+++++|+|||++.+|.++.++  ++.|+++|
T Consensus       725 a~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        725 ARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV  772 (774)
T ss_pred             HHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence            9999999999999999999999999999999999998865  67777665

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.80  E-value=2.7e-19  Score=138.70  Aligned_cols=69  Identities=28%  Similarity=0.434  Sum_probs=65.3

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCC-hHHHHHHHHHhcc
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGH  397 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~-~~~~~~l~~~l~~  397 (441)
                      .++|||.++|||||||+|+++|+++|++|++|+|+|+|++++|+|||+|.+|.|+. ++.++.|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            37899999999999999999999999999999999999999999999999999996 6788999999875

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.80  E-value=3.2e-19  Score=139.31  Aligned_cols=70  Identities=16%  Similarity=0.233  Sum_probs=66.0

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCC-hHHHHHHHHHhcccc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGHTK  399 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~-~~~~~~l~~~l~~~~  399 (441)
                      ++|||.++|||||||+|+++|.++|++|++|+|+|+|++++|+|||++.+|.|+. +++++.|+++|.+++
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al   72 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI   72 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999996 668899999998744

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=4.1e-18  Score=133.06  Aligned_cols=70  Identities=24%  Similarity=0.338  Sum_probs=64.7

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE--eeCCeeEEEEEEEcCCCCCCC-hHHHHHHHHHhccccc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIS--TIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGHTKL  400 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~--T~g~~~~d~F~v~d~~g~~~~-~~~~~~l~~~l~~~~~  400 (441)
                      |+|||.+.|||||||+|+++|+++|++|++|||+  |+|++++|+||| +.+|.+++ +++++.|+++|.++++
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999  999999999999 88898885 6788999999988554

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=1.2e-17  Score=130.44  Aligned_cols=75  Identities=65%  Similarity=1.131  Sum_probs=71.7

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR  325 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r  325 (441)
                      +|+|+|.|+||||||++|+++|+++|++|..|+|.|.++++.|+|||++.+|.|+.++.+++.|+++|.++|.||
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999988654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=7.4e-17  Score=125.12  Aligned_cols=69  Identities=28%  Similarity=0.371  Sum_probs=65.6

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~  185 (441)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|++++|+|||++ .+|.++.++++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999999 68999999999999998875

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.67  E-value=5.8e-16  Score=142.87  Aligned_cols=140  Identities=14%  Similarity=0.138  Sum_probs=110.4

Q ss_pred             CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013535          249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE-----  323 (441)
Q Consensus       249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~-----  323 (441)
                      ..+.+|++.|+||||++++++++|+++||||.+++....+|.+.-++.|.   +.+    ...+.|+.+|...-.     
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L~   78 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDLL   78 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCeE
Confidence            36789999999999999999999999999999999999999988888873   333    467778887754321     


Q ss_pred             ---hhc--------CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC--eeEEEEEEEcCCCCCCChHHHHH
Q 013535          324 ---RRA--------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG--KVKDTFYVTDVTGNPVDPKIIDS  390 (441)
Q Consensus       324 ---~r~--------~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~--~~~d~F~v~d~~g~~~~~~~~~~  390 (441)
                         ++.        +.++.++|.+.|||||+++||++|+++|+||.+.+..|+++  ...+.|.+.-.-..|.+ ..++.
T Consensus        79 i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~~  157 (190)
T PRK11589         79 IVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAAN  157 (190)
T ss_pred             EEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHHH
Confidence               111        11489999999999999999999999999999999999986  67788887655455533 22444


Q ss_pred             HHHHhc
Q 013535          391 IRRQIG  396 (441)
Q Consensus       391 l~~~l~  396 (441)
                      |+++|.
T Consensus       158 L~~~l~  163 (190)
T PRK11589        158 IEQAFK  163 (190)
T ss_pred             HHHHHH
Confidence            555444

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.67  E-value=5.5e-16  Score=121.12  Aligned_cols=72  Identities=19%  Similarity=0.255  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE--eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~--T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (441)
                      |+|+|.++||||||++|+++|+++|++|++|+|.  |.|++++|+||| + ..|.++.++++++.|+++|.++|..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999  999999999999 6 4788899999999999999998864

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.62  E-value=4.4e-15  Score=116.63  Aligned_cols=73  Identities=66%  Similarity=0.996  Sum_probs=68.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhhcC
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST-GYAIKDPKRLSTIKELLFNVLRG  190 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~~  190 (441)
                      |+|+|.++||||||++||++|+++|+||++|+++|.++++.|+|+|++ .+ +.++.++++++++++.|.++|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            579999999999999999999999999999999999999999999999 46 77788889999999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.58  E-value=3.5e-14  Score=131.03  Aligned_cols=152  Identities=13%  Similarity=0.127  Sum_probs=109.1

Q ss_pred             CCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        24 ~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      ...+++|+++|+||||++++++++|+++||||+++++...+|.|.-++.|..+       |.....|+..|...... ..
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~-------~~~~~~le~~L~~l~~~-~~   76 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS-------WNAITLIESTLPLKGAE-LD   76 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC-------hhHHHHHHHHHHhhhhh-cC
Confidence            34678999999999999999999999999999999999999988878887332       34556667666554310 01


Q ss_pred             cceee---ee---cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC------eEEEEEEEEeCCCCCCC
Q 013535          104 LRSSV---GV---MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND------RAAAVVHVTDHSTGYAI  171 (441)
Q Consensus       104 ~~~~v---~~---~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~------~~~dvF~V~~~~~g~~~  171 (441)
                      ....+   ..   ......+.++|+|.||||+++.+|++|+++|+||.+.+..|.+.      .....|.+.-| .+.  
T Consensus        77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~--  153 (190)
T PRK11589         77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQ--  153 (190)
T ss_pred             eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCC--
Confidence            11111   11   11112589999999999999999999999999999999888764      23444455442 222  


Q ss_pred             CCHHHHHHHHHHHHHhhcC
Q 013535          172 KDPKRLSTIKELLFNVLRG  190 (441)
Q Consensus       172 ~~~~~~~~l~~~L~~~L~~  190 (441)
                          ..+.++.+|.+....
T Consensus       154 ----~~~~L~~~l~~l~~e  168 (190)
T PRK11589        154 ----DAANIEQAFKALCTE  168 (190)
T ss_pred             ----CHHHHHHHHHHHHHH
Confidence                246777777664443

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.58  E-value=1.9e-14  Score=113.10  Aligned_cols=71  Identities=24%  Similarity=0.381  Sum_probs=66.7

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccC-CCCCCCHHHHHHHHHHHHHHH
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD-GLPISSEAERERVIQCLEAAI  322 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~-g~~i~~~~~~~~l~~~L~~~L  322 (441)
                      |+|+|+++||||||++++++|+++||||++|++.|.++++.|+|+|++++ |.++.+++++++|++.|.+.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l   72 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL   72 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999999999999988 888888889999999998765

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.58  E-value=1.7e-14  Score=112.92  Aligned_cols=70  Identities=26%  Similarity=0.365  Sum_probs=65.4

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~  321 (441)
                      ++|+|+++||||||++++++|+.+|+||++|+|.|. +|+++|+|+|++.+|.++.+++++++|++.|.+.
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~   72 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA   72 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence            689999999999999999999999999999999998 6899999999999999887778999999998765

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.57  E-value=2.3e-14  Score=112.22  Aligned_cols=71  Identities=34%  Similarity=0.524  Sum_probs=65.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (441)
                      +.|+|+++||||||+++|++|+.+|+||++|+|+|. ++++.|+|+|++ ..+.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999998 689999999999 57888877889999999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.55  E-value=1.3e-14  Score=128.34  Aligned_cols=142  Identities=17%  Similarity=0.179  Sum_probs=115.1

Q ss_pred             CCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-----H
Q 013535          248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA-----I  322 (441)
Q Consensus       248 ~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~-----L  322 (441)
                      ..++.+|+++++||||+...+++...++||||.++|+...|+.+.-+..|.   |.|    +...+|+++|...     |
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L   74 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDL   74 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCe
Confidence            356899999999999999999999999999999999999999887666654   444    6788888888532     1


Q ss_pred             ----hhh-------cCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe--eEEEEEEEcCCCCCCChHHHH
Q 013535          323 ----ERR-------ASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK--VKDTFYVTDVTGNPVDPKIID  389 (441)
Q Consensus       323 ----~~r-------~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~--~~d~F~v~d~~g~~~~~~~~~  389 (441)
                          .+.       .+.++.++|.+.|||||+.++|++|.++|+||++....|+...  ..-.|.+.-.-+.|.+ ..++
T Consensus        75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~  153 (176)
T COG2716          75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSIS  153 (176)
T ss_pred             EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHH
Confidence                111       1236899999999999999999999999999999999998654  6668988666667765 4556


Q ss_pred             HHHHHhcc
Q 013535          390 SIRRQIGH  397 (441)
Q Consensus       390 ~l~~~l~~  397 (441)
                      .|+++|++
T Consensus       154 ~l~~~f~a  161 (176)
T COG2716         154 ALRDAFEA  161 (176)
T ss_pred             HHHHHHHH
Confidence            77776664

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.53  E-value=7.8e-14  Score=110.12  Aligned_cols=71  Identities=24%  Similarity=0.352  Sum_probs=64.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (441)
                      .++|+++||||||+++|++|+++|+||++|+|.| .++++.|+|+|+++ .+. ..+++++++++++|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 79999999999994 555 55678999999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.52  E-value=1.3e-13  Score=108.84  Aligned_cols=70  Identities=21%  Similarity=0.352  Sum_probs=63.4

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 013535          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  323 (441)
Q Consensus       253 ~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~  323 (441)
                      +++|+++||||||++++++|+++|+||++|+|.| .+|+++|+|+|++++|. ..+++++++|+++|.+.|.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~   72 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG   72 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999997 58999999999998777 5556789999999988764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.47  E-value=3.7e-13  Score=103.11  Aligned_cols=65  Identities=25%  Similarity=0.306  Sum_probs=55.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHh
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL   94 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L   94 (441)
                      .+|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+.+|..  ...+.+.++++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~--~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE--TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc--hHHHHHHHHHhh
Confidence            58999999999999999999999999999999996 889999999999988752  123445555554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.38  E-value=3.8e-12  Score=97.54  Aligned_cols=65  Identities=20%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L  322 (441)
                      .+|.|+++||||||++++++|+.+|+||++|+|.|+ +|+++|+|+|.+.+|.-      .+.|+++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~------~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE------TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc------hHHHHHHHHHhh
Confidence            478999999999999999999999999999999987 78999999999988762      334555555443

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.31  E-value=1e-11  Score=110.10  Aligned_cols=154  Identities=12%  Similarity=0.160  Sum_probs=113.2

Q ss_pred             CCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCC---CC
Q 013535           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FA  101 (441)
Q Consensus        25 ~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~---~~  101 (441)
                      .+++.|++++.|+||+...+|++..++||||+++++...++.+..+..+..+       |+....|+.+|....+   +.
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs-------~dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS-------WDAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC-------HHHHHHHHHHhhcccccCCeE
Confidence            4578999999999999999999999999999999999988887766555333       7778888988866543   11


Q ss_pred             CCccee-eee-cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHH
Q 013535          102 PSLRSS-VGV-MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRL  177 (441)
Q Consensus       102 ~~~~~~-v~~-~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~  177 (441)
                      ..+.+. ... ......+.+.|.+.||||++.++|.+|..+|+||++....|.  .+.-.-.|.+.- .-.-|.  .-..
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa--~~~i  152 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPA--NLSI  152 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCC--cCcH
Confidence            111111 011 355678999999999999999999999999999999988885  333445565544 222333  2245


Q ss_pred             HHHHHHHHHhh
Q 013535          178 STIKELLFNVL  188 (441)
Q Consensus       178 ~~l~~~L~~~L  188 (441)
                      ..|++++.+..
T Consensus       153 ~~l~~~f~al~  163 (176)
T COG2716         153 SALRDAFEALC  163 (176)
T ss_pred             HHHHHHHHHHH
Confidence            67777776533

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.30  E-value=1.4e-11  Score=133.69  Aligned_cols=120  Identities=16%  Similarity=0.158  Sum_probs=102.7

Q ss_pred             EEEEEEe-cCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh--hh-cC
Q 013535          252 TVITMRS-KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE--RR-AS  327 (441)
Q Consensus       252 t~I~V~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~--~r-~~  327 (441)
                      -.++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.++..|.|....|.+.++....+.++.++...+.  .. .|
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            4678887 9999999999999999999999999999 888899999999999998776555556555543332  11 12


Q ss_pred             C----ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEE
Q 013535          328 E----GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVT  376 (441)
Q Consensus       328 ~----~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~  376 (441)
                      +    ++++||++.||||+|+.|+++|.    .|.+|+++|.|..++|.||+.
T Consensus       626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~  674 (693)
T PRK00227        626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK  674 (693)
T ss_pred             ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence            2    57999999999999999999999    899999999999999999996

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.29  E-value=3e-11  Score=94.29  Aligned_cols=67  Identities=24%  Similarity=0.349  Sum_probs=61.5

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHH
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~  319 (441)
                      +.|+|+++||||+|++++++|+++|+||.+|++.|.+++++|+|+|.+++|.++ +++++++|+++|.
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            579999999999999999999999999999999999889999999999998877 5568888888775

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.27  E-value=3.9e-11  Score=93.67  Aligned_cols=67  Identities=34%  Similarity=0.495  Sum_probs=60.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~  185 (441)
                      +.|+|.++|+||+|++|+++|+++|+||++|+++|.++.+.|+|+|++ .++.++ +++++++++++|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence            689999999999999999999999999999999998889999999999 477777 6778888887764

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.22  E-value=1.5e-10  Score=125.77  Aligned_cols=144  Identities=15%  Similarity=0.182  Sum_probs=119.8

Q ss_pred             EEEEEEc-cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCC-CCcc
Q 013535           28 TVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA-PSLR  105 (441)
Q Consensus        28 ~~v~V~~-~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~-~~~~  105 (441)
                      -.++|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+..+..+.+.+..++.+..+.. +.++
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            4777776 9999999999999999999999999999 88888999999888888777778888888888877532 2233


Q ss_pred             eeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535          106 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (441)
Q Consensus       106 ~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~  185 (441)
                      +.+.+.     ++++|.+.||+|+|+.++++|.    +|..|++.|.|..++|+|++.+   +.      ...++++++.
T Consensus       626 ~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~~------~r~~~~~~~~  687 (693)
T PRK00227        626 ATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---GF------DRATVERDVT  687 (693)
T ss_pred             ceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---cc------cHHHHHHHHH
Confidence            333332     8999999999999999999999    8999999999999999999985   11      1377888888


Q ss_pred             HhhcC
Q 013535          186 NVLRG  190 (441)
Q Consensus       186 ~~L~~  190 (441)
                      .+|.+
T Consensus       688 ~~~~~  692 (693)
T PRK00227        688 RVLAG  692 (693)
T ss_pred             HHHhc
Confidence            77764

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.21  E-value=1.4e-10  Score=89.41  Aligned_cols=69  Identities=43%  Similarity=0.771  Sum_probs=63.4

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhccc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHT  398 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~  398 (441)
                      |.++|.+.||||+|++|+++|+++|++|.++++.|.++.+.|+|++++..|.|.+++.+++|++.|..+
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999999889999999999999987667888899988763

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.18  E-value=2.3e-10  Score=88.19  Aligned_cols=70  Identities=41%  Similarity=0.609  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (441)
                      |.+.|.++|+||+|++|+++|+.+|+||.++++.|.++.+.|.|++++ ..+.+. +.+++++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999998889999999999 577774 6789999999987754

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.87  E-value=2.3e-08  Score=76.63  Aligned_cols=70  Identities=43%  Similarity=0.649  Sum_probs=60.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (441)
                      +.|.|.++|+||+|++++++|+++|++|.++++.+.++...++|++.+ ..+.+. ++++++++++.|..++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence            368899999999999999999999999999999998778999999998 455554 5678999999987653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.84  E-value=3.5e-08  Score=75.57  Aligned_cols=68  Identities=41%  Similarity=0.686  Sum_probs=60.2

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +.|.|.+.|+||+|++|+.+|+++|++|.++++.|.++...+.|++.+.++.+.++++++.|++.|..
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~   68 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALED   68 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence            36889999999999999999999999999999999888999999999887777666677888887754

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.62  E-value=2.7e-07  Score=72.67  Aligned_cols=63  Identities=24%  Similarity=0.287  Sum_probs=50.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcc
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~   96 (441)
                      +..|+++|+||||+++.++++|+++||||.+.++.+.+|.+.-.+.|.-+       |...+.|+++|..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~   64 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEE   64 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHH
Confidence            46899999999999999999999999999999999999998888888655       3345666666654

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.61  E-value=4e-07  Score=71.72  Aligned_cols=66  Identities=24%  Similarity=0.388  Sum_probs=55.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ..+|++.|+||||+++.++++|+++|+||.+.+..+.++.+...+.|.-+        ++..++++++|.+...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999998872        4567889999887543

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.46  E-value=1.1e-06  Score=69.33  Aligned_cols=48  Identities=19%  Similarity=0.183  Sum_probs=43.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID   75 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~   75 (441)
                      +.|++.|+||||+.+++++.|+++|+||++++.+..+|+++-...+..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~   49 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG   49 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence            689999999999999999999999999999999998888876666643

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.45  E-value=7.7e-07  Score=65.73  Aligned_cols=59  Identities=22%  Similarity=0.335  Sum_probs=51.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHH
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEV   86 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~   86 (441)
                      ++|+|.|||+.||-.++|+++.+.|++|..++++|++.|++.+|+|.......-..|..
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~l   59 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDL   59 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHH
Confidence            47999999999999999999999999999999999999999999997654333345654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.38  E-value=7e-06  Score=68.59  Aligned_cols=114  Identities=25%  Similarity=0.267  Sum_probs=83.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCccee
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSS  107 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~  107 (441)
                      -+|.|...|+||-++..+..|.++|+||..-.|.-.+.+-+...+|..++       ..    ..+|.+..-     .+ 
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d-------~A----~~~Lee~gF-----~V-   66 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD-------EA----HSVLEEAGF-----TV-   66 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH-------HH----HHHHHHCCc-----EE-
Confidence            37899999999999999999999999999766654555545556663332       22    345544331     01 


Q ss_pred             eeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535          108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (441)
Q Consensus       108 v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~  164 (441)
                            ...-++-|...|+||-|+.|+++|.++++|+..+..+++. ..+.-+|.+.|
T Consensus        67 ------r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          67 ------RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             ------EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence                  1345678889999999999999999999999999999864 44555555433

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.32  E-value=2.2e-06  Score=67.16  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +++|.++||||++++|+++|+++|+||...+-++++++-.-.|.+.-+.+.     ..+.|+++|..
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~-----~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA-----DSEALLKDLLF   62 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC-----CHHHHHHHHHH
Confidence            478999999999999999999999999999999998776666666544332     23455555443

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.31  E-value=3.2e-06  Score=66.26  Aligned_cols=49  Identities=18%  Similarity=0.078  Sum_probs=44.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCC
Q 013535           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDG   78 (441)
Q Consensus        30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g   78 (441)
                      |+|.++||||+.++++++|+++|+||.+.+..+.++.+.-.+.+..+.+
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~   50 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS   50 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence            7899999999999999999999999999998887888887888876654

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.29  E-value=8.9e-06  Score=61.28  Aligned_cols=61  Identities=26%  Similarity=0.348  Sum_probs=47.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC--eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~--~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      |.|.+.++||||+|++++.+|+++|+||..+.+.+.++  .....+...+         ....+++.+.|.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            57889999999999999999999999999999999876  3334444333         2344666666655

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.27  E-value=3.3e-05  Score=64.62  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=83.5

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-HhhhcCCce
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA-IERRASEGL  330 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~-L~~r~~~~~  330 (441)
                      -+|+|+..++||-|+.++..|.+.|+||..-.|.-+++.-+-.+.|.++           +.-.+.|+++ +  .....-
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~gF--~Vr~~d   70 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAGF--TVRETD   70 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCCc--EEEeee
Confidence            3689999999999999999999999999999998888766666666432           1122334331 0  011245


Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEE
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYV  375 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v  375 (441)
                      ++-|...|+||=|..|+.+|.++++|+.++..-+.- +.+.-.|.+
T Consensus        71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~  116 (142)
T COG4747          71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV  116 (142)
T ss_pred             EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence            888999999999999999999999999999876543 445555544

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.24  E-value=1.3e-05  Score=60.34  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=46.9

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCC--eEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~--~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~  320 (441)
                      +.|.|.++||||+|++++++|+++|+||..+...+.++  .....+.+.+        ....+.+.++|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD--------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE--------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC--------CCCHHHHHHHHHc
Confidence            46899999999999999999999999999999999865  4444444433        2355566666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.23  E-value=8.9e-06  Score=64.18  Aligned_cols=63  Identities=21%  Similarity=0.380  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      .+|++.|+||||+.+.|+++|+++|+||.+.+.++.+++......+..+    .    ...+.+++.|...
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~----~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----W----DAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----c----ccHHHHHHHHHHH
Confidence            6789999999999999999999999999999999988887666655541    1    1247777777763

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.11  E-value=1.1e-05  Score=59.63  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~  321 (441)
                      ++|+|.|||+.||=.++++++.+.|++|..+.++|.|.++.-+|+|.......   +-+++.|+.+|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~---~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI---KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC---cccHHHHHHHHHhc
Confidence            47999999999999999999999999999999999999999999998644321   24788888887653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=98.09  E-value=0.0001  Score=72.49  Aligned_cols=116  Identities=8%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcce
Q 013535           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (441)
Q Consensus        29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~  106 (441)
                      .|+|.|+|+||+.+.+++.|+++|+||++.+.+.+  .|+|+-.+.+..+ +...+.+++.+.+..++.....    ...
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~----l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFE----MTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhC----CEE
Confidence            58999999999999999999999999999999984  4777767776443 2223333444444442333332    112


Q ss_pred             eeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       107 ~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      .+..  ......|-|.+.-+-.-|..+......-.+++.=+-+.+
T Consensus        77 ~l~~--~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis  119 (280)
T TIGR00655        77 ELIL--ADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS  119 (280)
T ss_pred             EEec--CCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence            2222  122334555555556677777777777767655555554

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.06  E-value=7.1e-06  Score=64.03  Aligned_cols=65  Identities=12%  Similarity=0.115  Sum_probs=45.6

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +|++.++||||++++|+++|+++|+||...+..+...  ...|++.-.-..|-.+...++|+++|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPD--SGRFFMRVEFELEGFDLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCC--CCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            4789999999999999999999999999999887422  2357775432223111134566665554

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.05  E-value=1.5e-05  Score=64.36  Aligned_cols=49  Identities=24%  Similarity=0.263  Sum_probs=43.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC   76 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~   76 (441)
                      ..|++.|+|+||++++++++|+++|+||.+.+.++.++.+.-.+.+..+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~   50 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS   50 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence            4789999999999999999999999999999998877877767777544

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.02  E-value=2e-05  Score=63.82  Aligned_cols=50  Identities=26%  Similarity=0.290  Sum_probs=43.6

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC   76 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~   76 (441)
                      ...|+|.|+|+||++++++++|+++|+||.+.+..+.+|.+.-.+.+..+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~   52 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS   52 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence            57899999999999999999999999999999988878877766666443

>PRK07431 aspartate kinase; Provisional

Probab=98.02  E-value=0.022  Score=62.07  Aligned_cols=258  Identities=13%  Similarity=0.180  Sum_probs=149.7

Q ss_pred             ccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcceeeeecC
Q 013535           34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMP  112 (441)
Q Consensus        34 ~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~v~~~~  112 (441)
                      .++.+|+++++...|+++|+||.--.... ..+..-..|.+...+-     .+..+.|+ .+.....     ...+.  .
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~-~l~~~~~-----~~~i~--~  344 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAE-AIAPALG-----GAEVL--V  344 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHH-HHHHHcC-----CCcEE--E
Confidence            57889999999999999999999665443 2333333567633221     11222222 2222111     01122  2


Q ss_pred             CCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       113 ~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ..+...|.+.|.   +.||+++++..+|++.|++|....  +.  ...-.|.|..          +..++..+.|++.+.
T Consensus       345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~Is~vv~~----------~d~~~av~~Lh~~f~  410 (587)
T PRK07431        345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVKVSCVIDA----------EDGDKALRAVCEAFE  410 (587)
T ss_pred             eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEcH----------HHHHHHHHHHHHHhc
Confidence            357788888885   799999999999999999997665  21  1222333322          234556666666664


Q ss_pred             CCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEE-EecCCcchHHHH
Q 013535          190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITM-RSKDRPKLLFDI  268 (441)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~t~I~V-~~~DrpGLl~~i  268 (441)
                      -+.. .   ..+.            +.    . .           +....+.-.+. ...+...|++ ..++.+|+++++
T Consensus       411 ~~~~-~---~~~~------------~~----~-~-----------~~~~~~v~gIa-~~~~~~~i~l~~~~~~~g~~a~i  457 (587)
T PRK07431        411 LEDS-Q---IEIN------------PT----A-S-----------GQDEPEVRGVA-LDRNQAQLAIRNVPDRPGMAASI  457 (587)
T ss_pred             cCCc-c---cccC------------cc----c-c-----------CCCCCcEEEEE-ccCCEEEEEECCCCCCccHHHHH
Confidence            4321 0   0011            00    0 0           01112211111 2334555555 467889999999


Q ss_pred             HHHHHhCCceEEEEEEEec-C--CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhc--------CCceEEEEEeC
Q 013535          269 VCTLTDMQYVVFHGMVNTG-R--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA--------SEGLELELCTE  337 (441)
Q Consensus       269 ~~~L~~~glnI~~A~i~t~-~--~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~--------~~~~~ieV~~~  337 (441)
                      ...|+++|++|..-..... +  |..--.|.+..         ....++.+.+++ +.+..        ..-..|.|.+.
T Consensus       458 f~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~---------~~~~~~~~~l~~-l~~~~~~~~i~~~~~va~VSvVG~  527 (587)
T PRK07431        458 FGALAEANISVDMIVQSQRCRSDGTRDISFTVPK---------EDREAAQKVLRE-LAKQLPGAEVEDGPAIAKVSIVGA  527 (587)
T ss_pred             HHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH---------HHHHHHHHHHHH-HHHhcCCceEEEeCCeEEEEEECC
Confidence            9999999999986533211 1  22333355432         122233333322 22111        22457888886


Q ss_pred             ---CccchHHHHHHHHHHCCceEEEEE
Q 013535          338 ---DRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       338 ---DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                         .+||+++++.++|.+.|++|....
T Consensus       528 gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        528 GMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             CccCCcCHHHHHHHHHHHCCCcEEEee
Confidence               889999999999999999997666

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=98.00  E-value=0.00015  Score=71.56  Aligned_cols=118  Identities=8%  Similarity=0.034  Sum_probs=70.3

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEE--ecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS--SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~--t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  104 (441)
                      ..+|+|.|+||||+.++++++|+++|+||++.+.+  +..|.++-.+.+.+.....++..++.+.+.+ +.....    .
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~-l~~~l~----l   83 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQP-VAEKFD----M   83 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHH-HHHHhC----C
Confidence            46899999999999999999999999999999997  3334444343333221112222333344433 222221    1


Q ss_pred             ceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       105 ~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      ...+.+  ......|-|...-+..-|..+........++..=+-+.+
T Consensus        84 ~~~i~~--~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis  128 (289)
T PRK13010         84 QWAIHP--DGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS  128 (289)
T ss_pred             eEEEec--CCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence            222222  223334555555556677777777777777665555555

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.98  E-value=1.7e-05  Score=62.75  Aligned_cols=66  Identities=17%  Similarity=0.339  Sum_probs=47.4

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe--eEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK--VKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~--~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      ++.+.++||||++++|+++|+++|+||.+.+..|.+..  ....|+++-....|- ....++|+++|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHH
Confidence            47899999999999999999999999999999998733  445666544323331 1224555555544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.97  E-value=4.7e-05  Score=60.19  Aligned_cols=49  Identities=20%  Similarity=0.203  Sum_probs=41.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecC------CEEEEEEEEEcCC
Q 013535           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG------GWFMDVFNVIDCD   77 (441)
Q Consensus        29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~------g~~~d~f~V~~~~   77 (441)
                      .|+|.|+|+||+.++|++.|+++|+||.+.+..+.+      +.+.-.+.+..+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~   55 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA   55 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC
Confidence            378999999999999999999999999999998754      5666666665553

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.94  E-value=7.9e-05  Score=58.06  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=38.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcC
Q 013535           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDC   76 (441)
Q Consensus        29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~   76 (441)
                      .|+|.|+||||++++++++|+++|+||.+.+.++  ..+.+.-.+.+..+
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~   50 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE   50 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence            4789999999999999999999999999999986  33454444454333

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.92  E-value=3.5e-05  Score=62.25  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ..+++.|+|+||+++.|+++|+++|+||.+.+..+.++...-.+.+.-+  +...    ..+.+++.|.....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~l~~   68 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEELGK   68 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999988877777777652  1111    24778888776443

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.78  E-value=0.00049  Score=67.98  Aligned_cols=118  Identities=13%  Similarity=0.122  Sum_probs=69.4

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      ....|+|.|+||||+.+.++++|+++|+||.+.+.++  .+|.+.-.+.+.. +..+.+    ...|+++|.....   .
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~~----~~~L~~~L~~l~~---~   76 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIFN----LETLRADFAALAE---E   76 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCCC----HHHHHHHHHHHHH---H
Confidence            4578999999999999999999999999999999998  7787666666643 111111    2334444433211   0


Q ss_pred             cceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          104 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       104 ~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      ....+..........|-|.+.-+-.-|..+........++..=+-+.|
T Consensus        77 l~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK06027         77 FEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVIS  124 (286)
T ss_pred             hCCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEE
Confidence            011122211112233444444445556666666666555555444444

>PRK00194 hypothetical protein; Validated

Probab=97.77  E-value=0.00011  Score=59.54  Aligned_cols=48  Identities=10%  Similarity=0.105  Sum_probs=42.0

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEE
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR  298 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~  298 (441)
                      ..+++|.|+||||+++++++.|+++|+||.+.+..+.++.+.-.+.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~   50 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence            568999999999999999999999999999999888877766555554

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.69  E-value=0.00035  Score=55.18  Aligned_cols=65  Identities=22%  Similarity=0.338  Sum_probs=50.4

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      -.+.|.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+.-.|.+.-.       +.++++++.+.|++
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHHC
Confidence            45788999999999999999999999999999999994  5677777777552       45677777766643

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.68  E-value=0.0014  Score=64.74  Aligned_cols=116  Identities=8%  Similarity=0.013  Sum_probs=72.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  104 (441)
                      ...|+|.|+||||+.+++|++|+++|+||.+.+.++  .++.+.-.+.+..+.+.  +...+.+.|++ ++....    .
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~~~~L~~~L~~-l~~~l~----l   79 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--DEDALRAGFAP-IAARFG----M   79 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--CHHHHHHHHHH-HHHHhC----c
Confidence            468999999999999999999999999999999985  55677666666545432  22334344443 333322    1


Q ss_pred             ceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       105 ~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      ...+.+..  ....|-|.+.-+-.-|..+........++.+=+-+.+
T Consensus        80 ~i~i~~~~--~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         80 QWELHDPA--ARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             EEEEeecc--cCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence            12222211  2224444444466667777777777766655555555

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.67  E-value=0.00034  Score=55.24  Aligned_cols=64  Identities=31%  Similarity=0.457  Sum_probs=49.4

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      ++.|+|.+.||||+|++|++++++.|+||.++++.+.  ++.+.-.|.+.-.     +.+++..|-+.|.+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence            4678999999999999999999999999999999985  5667777766433     23677777777765

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.66  E-value=5.1e-05  Score=60.80  Aligned_cols=50  Identities=24%  Similarity=0.250  Sum_probs=42.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC   76 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~   76 (441)
                      ...|||.+.||||+.+.++++|+++|.||++-+..-.+|++.-.+.|..+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~   52 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS   52 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence            35899999999999999999999999999988877788887766666433

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.54  E-value=0.00069  Score=64.83  Aligned_cols=66  Identities=14%  Similarity=0.223  Sum_probs=48.1

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHH
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~   92 (441)
                      ...++++.|||++|++++|++.|+++||||.+++.++  ..|+|+-.... ..++.+.+.+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f-~~~~~~~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEF-EGEGGPLDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEE-ecCCCcccHHHHHHHHHH
Confidence            4579999999999999999999999999999999997  34777644333 233443433444444443

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.40  E-value=0.0048  Score=60.96  Aligned_cols=67  Identities=16%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~  321 (441)
                      ...+|+|.|+||||+.++++++|+++|+||.+.+..+  .+|.+.-.+.+.- +..+    ...+.|+++|++.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~----~~~~~L~~~L~~l   73 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLI----FNLETLRADFAAL   73 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCC----CCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999  6776554444432 1111    1256777777654

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.39  E-value=0.0018  Score=49.94  Aligned_cols=61  Identities=13%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      |.|.+.|+||+|++|+.++++.|+||.+....+. .+.+...|.+.-       .+.++++++.+.|+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHhc
Confidence            6789999999999999999999999999888765 356666665544       135677777777654

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.35  E-value=0.0041  Score=61.51  Aligned_cols=108  Identities=10%  Similarity=0.082  Sum_probs=63.6

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN--TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE-----  323 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~--t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~-----  323 (441)
                      ..+|+|.|+||||+.+.+++.|+++|+||.+.+.+  +..+.+.-.+.+.+......    ..+.|+++|.+.-.     
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~   84 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ   84 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence            45799999999999999999999999999999987  33343333322332211111    24566666654321     


Q ss_pred             ---hhcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEE
Q 013535          324 ---RRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI  362 (441)
Q Consensus       324 ---~r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i  362 (441)
                         +...+...|-|-+--+..-|.+|......-.++.+-.-+
T Consensus        85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~v  126 (289)
T PRK13010         85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI  126 (289)
T ss_pred             EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEE
Confidence               111222333333333444566666666665555443333

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.35  E-value=0.0054  Score=60.42  Aligned_cols=105  Identities=10%  Similarity=0.116  Sum_probs=68.4

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh------
Q 013535          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER------  324 (441)
Q Consensus       253 ~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~------  324 (441)
                      +|+|.|+||||+.+.+++.|+++|+||.+.+.+..  .|++.-.+.+.-+.. ..    ..+.|+++|.+.+..      
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~----~~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RL----EESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CC----CHHHHHHHHHHHHHHHhCCEE
Confidence            58999999999999999999999999999998885  366665555543321 11    245666666552211      


Q ss_pred             ---hcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEE
Q 013535          325 ---RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI  362 (441)
Q Consensus       325 ---r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i  362 (441)
                         ...+...|-|-+--+---|.+|......-.++++-+-+
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v  117 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV  117 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence               11122334444444455678888887776665544443

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.32  E-value=0.0024  Score=49.24  Aligned_cols=61  Identities=18%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +.|.+.||||+|++|+.++++.|+||.+....+.. +.+.-.|-+.-.     +.++++.+.+.|..
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence            68999999999999999999999999999887753 555555655322     23566666666665

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.26  E-value=0.0084  Score=59.27  Aligned_cols=108  Identities=9%  Similarity=0.106  Sum_probs=69.0

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh----
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER----  324 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~----  324 (441)
                      ..+|+|.|+||||+.+++++.|+++|+||.+.+..+.  ++.+.-.+.+..+.+.      ..+.|+++|++....    
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence            4579999999999999999999999999999998864  3555545555433332      255666666554221    


Q ss_pred             ----hcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535          325 ----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  364 (441)
Q Consensus       325 ----r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T  364 (441)
                          ...+...|-|-+--+.--|..|..++..-.++.+-+-+-|
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence                1112223333333355567777777776666554444433

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.21  E-value=0.0026  Score=49.96  Aligned_cols=67  Identities=13%  Similarity=0.145  Sum_probs=48.5

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe-eCCeeEEEEEEEcCCCCCCChHHHHHHHHHhccccccc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIST-IGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQV  402 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T-~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~  402 (441)
                      +.+.+...|+||+|++|+.+|+..|.||.+..+.- .......+-.+...     ++..+++|...|.+ +.++
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-----~~~~i~qi~kQL~K-LidV   70 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-----TENEATLLVSQLKK-LINV   70 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-----CHHHHHHHHHHHhC-CcCE
Confidence            57899999999999999999999999999999873 33333333333222     24567788888877 4433

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.16  E-value=0.00061  Score=54.69  Aligned_cols=48  Identities=15%  Similarity=0.057  Sum_probs=40.4

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEE
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR  298 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~  298 (441)
                      ..+|+|.++||||+.+.++++|+++|+||.+-.-.-.+|++.-.+.|.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~   50 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence            468999999999999999999999999999876655677776666654

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.15  E-value=0.0024  Score=49.73  Aligned_cols=59  Identities=20%  Similarity=0.439  Sum_probs=43.8

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      .++|.+.||+|+|++|+.++++.|+||.+..+.+. +.    .+++-. ..  +.+++..|-++|..
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i~-v~--~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNFP-TI--EFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEeE-ec--CHHHHHHHHHHHhC
Confidence            47899999999999999999999999999998775 22    333211 11  23566777777765

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.09  E-value=0.0051  Score=46.37  Aligned_cols=62  Identities=19%  Similarity=0.386  Sum_probs=44.9

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      .+.+.+.|+||+|.+|+.+|+++|++|.+....+. ++.....++..+.   + + +.++.+.+.|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence            57889999999999999999999999999998775 3333333323232   1 3 456677777665

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.07  E-value=0.0037  Score=51.12  Aligned_cols=67  Identities=19%  Similarity=0.314  Sum_probs=48.3

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      .....|.+...|+||+|++|+++|+..|.||.+..+......-.--+.+.-.  +     ++.++++.+.|.+.
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-----~~~i~Qi~kQL~KL   72 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-----DQRLEQMISQIEKL   72 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-----chHHHHHHHHHhCC
Confidence            4567799999999999999999999999999999876543322222233221  1     24678888887653

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.02  E-value=0.0068  Score=45.82  Aligned_cols=61  Identities=16%  Similarity=0.270  Sum_probs=42.8

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-----CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-----NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-----~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      +.|..+|+||+|++|+.+|+++|+||.+......     .+.....|.+..       .+.++++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            3577899999999999999999999998876653     233444444433       134556677666654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.99  E-value=0.0041  Score=48.38  Aligned_cols=59  Identities=22%  Similarity=0.286  Sum_probs=43.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .|.|.+.||+|+|++|+.++++.|+||.+..+.+. +.  ..|.+.-       .+.++++.+.+.|..
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-------~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-------IEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-------cCHHHHHHHHHHHhC
Confidence            47899999999999999999999999999998775 33  2232222       235566777666654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.98  E-value=0.0052  Score=48.29  Aligned_cols=62  Identities=5%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC-eE-EEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~-~~-~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ..|.+...|+||.|++|+++|+..|+||.+..+.-..+ .. .-++.+..        ++...++|.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence            46899999999999999999999999999988774332 22 22333222        24566777777765

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.97  E-value=0.0027  Score=46.37  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=38.5

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEc
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTD  377 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d  377 (441)
                      +++...|+||.|.+++..|.++|+||.+..+...+ +.+.-.|-+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46789999999999999999999999999988765 56666666633

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.96  E-value=0.0048  Score=46.80  Aligned_cols=44  Identities=20%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  375 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v  375 (441)
                      +.+.|...|+||.|++|+..|.++|+||.+..+...++.  ..|.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl   45 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL   45 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence            357889999999999999999999999999998776553  45555

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.94  E-value=0.0031  Score=57.58  Aligned_cols=64  Identities=20%  Similarity=0.348  Sum_probs=44.9

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +.+.|.+.|+||+|++|+.+|+++|+||.+..+..........+.+.-+ +   ++..+++|+++|.+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~---~~~~ieqL~kQL~K   66 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G---DDRTIEQLTKQLYK   66 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C---CHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999996532222224444322 1   12235666666655

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.94  E-value=0.0029  Score=46.19  Aligned_cols=46  Identities=20%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~  164 (441)
                      +.+..+|+||.|++++.+|.++|+||.+..+...+ +.....|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999988765 66777776644

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.92  E-value=0.0059  Score=55.77  Aligned_cols=65  Identities=11%  Similarity=0.275  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ..+.+.+.|+||+|++|+++|+++|+||.+-.+.+.  .+...-++.+..        ++...++|.+.|.+...
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence            578999999999999999999999999999999762  333333333321        12336888888877544

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.91  E-value=0.0072  Score=45.67  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI  365 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~  365 (441)
                      +.|..+|+||+|++|+++|+++|+||.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            4678899999999999999999999998876543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.90  E-value=0.0063  Score=46.32  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC--CeeEEEEEEE
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVT  376 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g--~~~~d~F~v~  376 (441)
                      +.+.|..+|+||.|++|++.|+++|+||.+.......  ....-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4678999999999999999999999999998876652  2344455553

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.87  E-value=0.006  Score=48.67  Aligned_cols=64  Identities=11%  Similarity=0.158  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCe--EEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~--~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      ..|.+...|+||.|++|+++|++.|+||.+-.+......  ...++.+..   |    |+..++++.+.|.+.
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kl   68 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQ   68 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCC
Confidence            468899999999999999999999999999998764333  223333321   2    356678888887653

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.86  E-value=0.0043  Score=47.06  Aligned_cols=45  Identities=13%  Similarity=0.284  Sum_probs=37.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEE
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT  163 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~  163 (441)
                      ..+.|..+|+||.|++++.+|+++|+||.+..+...++.  .++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            467889999999999999999999999999998776553  445443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.82  E-value=0.0069  Score=49.57  Aligned_cols=71  Identities=15%  Similarity=0.257  Sum_probs=52.1

Q ss_pred             CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhccccccccc
Q 013535          328 EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKR  404 (441)
Q Consensus       328 ~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~~  404 (441)
                      ...+|.+...|+||+|++|+..|+..|.||++..+.-......-.+.+.-. +    +..++++.+.|.+ +.++-.
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~~~i~Qi~kQL~K-LidVik   77 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----DQRLEQMISQIEK-LEDVLK   77 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----chHHHHHHHHHhC-CcCEEE
Confidence            357899999999999999999999999999999987554443333333222 1    3577888888887 444333

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.79  E-value=0.0062  Score=48.59  Aligned_cols=65  Identities=15%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      .++.+...|+||+|++|+..|...|+||.+..+........-.+-+.-..|   ++..++++.+.|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhC
Confidence            468889999999999999999999999999998754444333333322112   24566788888877

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.78  E-value=0.013  Score=44.47  Aligned_cols=61  Identities=21%  Similarity=0.283  Sum_probs=43.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-C-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-D-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~-~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ..+.+..+|+||.|++++..|+++|+||.+....... + .....+.+..         ++..+++.+.|.+
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~---------~~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT---------QEDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC---------HHHHHHHHHHHHH
Confidence            4678899999999999999999999999988877652 2 3333444432         1234566666654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.75  E-value=0.011  Score=45.32  Aligned_cols=64  Identities=23%  Similarity=0.329  Sum_probs=43.6

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +.+.|.+.|+||+|.+|++.|+++|+||.+....+..+ ......+++..    .+..++.++-+.|.+
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i~~L~~   65 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAALAEIEA   65 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHHHHHHc
Confidence            45889999999999999999999999999998765432 22223333322    133455555555554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.75  E-value=0.011  Score=45.58  Aligned_cols=62  Identities=19%  Similarity=0.304  Sum_probs=46.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHH-HHHHHHHHHHH
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPK-RLSTIKELLFN  186 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~-~~~~l~~~L~~  186 (441)
                      .+.+.+.|+||+|++|+.+|+++|+||......+. ++.+.-.|.+...       +.+ .++++.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence            57899999999999999999999999999876553 3555666666441       233 66777777654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.70  E-value=0.01  Score=53.35  Aligned_cols=64  Identities=19%  Similarity=0.372  Sum_probs=48.1

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +++.|...|+||.|++|+..|+++|+||.+..+........-.+.+.- +|   ++..+++|.++|.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~K   65 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNK   65 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhc
Confidence            578999999999999999999999999999988766533333333321 12   34667888888887

acetohydroxyacid synthase is a synonym.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.69  E-value=0.013  Score=52.66  Aligned_cols=63  Identities=19%  Similarity=0.274  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      ..+++...|+||.|++|+++|+++|+||.+..+....  +...-++.|..        ++...+++.+.|.+.
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kl   66 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKL   66 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcC
Confidence            4688999999999999999999999999999887654  33344444422        245678888887653

acetohydroxyacid synthase is a synonym.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.65  E-value=0.015  Score=52.38  Aligned_cols=63  Identities=13%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      ..+++...|+||.|++|+++|+++|+||.+..+....  +...-++.+..        ++..++++.+.|.+.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KL   67 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKL   67 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcc
Confidence            5789999999999999999999999999998877643  33444444432        345678888887653

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.63  E-value=0.014  Score=43.71  Aligned_cols=44  Identities=18%  Similarity=0.305  Sum_probs=36.9

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC--CeeEEEEEE
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYV  375 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g--~~~~d~F~v  375 (441)
                      +.|.+.|+||+|++|+++|+++|+||.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999987764  444445555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.60  E-value=0.015  Score=52.41  Aligned_cols=68  Identities=19%  Similarity=0.344  Sum_probs=48.9

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE-EcCCCCCCChHHHHHHHHHhcccccccc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV-TDVTGNPVDPKIIDSIRRQIGHTKLQVK  403 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v-~d~~g~~~~~~~~~~l~~~l~~~~~~~~  403 (441)
                      +++.|...|+||.|++|+..|+++|+||.+..+....+...-.+.+ .+.     ++..++++...|.+ +.++-
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~-----~~~~i~qi~kQl~K-LidV~   71 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG-----DEQVIEQITKQLNK-LIDVL   71 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC-----CHHHHHHHHHHHhc-cccEE
Confidence            5789999999999999999999999999999876554232222222 222     34667788888877 44333

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.55  E-value=0.015  Score=45.67  Aligned_cols=66  Identities=15%  Similarity=0.252  Sum_probs=48.0

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEE-EEEEEcCCCCCCChHHHHHHHHHhcccccccc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKD-TFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVK  403 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d-~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~  403 (441)
                      +.+.+...|+||.|++|+..|+..|.||.+..+.-. .+.... ++-+ .      ++..+++|.+.|.+ +.++.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~K-L~dV~   71 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNK-LVDVA   71 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhc-CcCeE
Confidence            578999999999999999999999999999998753 222333 3333 2      23456677777776 44443

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.54  E-value=0.011  Score=56.74  Aligned_cols=66  Identities=15%  Similarity=0.247  Sum_probs=46.5

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~  320 (441)
                      ...++++.|||++|+.++|++.|+..|+||.++.-++.  .|++.-.-.... .+.+.    ..+.|++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCcc----cHHHHHHHHHH
Confidence            35789999999999999999999999999999998864  355443222222 22222    34556666654

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.52  E-value=0.018  Score=45.40  Aligned_cols=48  Identities=17%  Similarity=0.333  Sum_probs=38.6

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTD  377 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d  377 (441)
                      +.+.+...|+||.|++|...|+++|+||.+......+. ...=.|||.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            35677889999999999999999999999998666543 3455787743

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.51  E-value=0.014  Score=45.85  Aligned_cols=61  Identities=11%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ..+.+...|+||.|++++++|+..|.||.+-.+...  ++...-++.+.+         +..++.|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---------~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---------ERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---------CchHHHHHHHHhc
Confidence            578999999999999999999999999999998763  333444454422         2345777777755

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.42  E-value=0.031  Score=41.97  Aligned_cols=61  Identities=13%  Similarity=0.247  Sum_probs=44.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-C-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-N-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .+.+.+.|+||+|++|+.+|+++|++|.+....+. + +.+.-.|.+..       .+ ..++.+.+.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-------DD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-------CH-HHHHHHHHHHhC
Confidence            46788999999999999999999999999998775 3 33444444432       12 455666666653

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.42  E-value=0.022  Score=43.65  Aligned_cols=61  Identities=15%  Similarity=0.261  Sum_probs=43.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~  185 (441)
                      .|.+.+.|+||++++++.+|+++|+||.+....+..  +.+.-.+.+..       .+...++.+.+.|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-------~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-------TSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-------CCHHHHHHHHHHHH
Confidence            478889999999999999999999999999876542  33433443322       13455566666554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.39  E-value=0.021  Score=42.83  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEIST  364 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T  364 (441)
                      +.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678999999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.36  E-value=0.013  Score=43.70  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  366 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g  366 (441)
                      ++.|..+|+||-|++++..|+++|+||.+.......
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367889999999999999999999999988875544

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.35  E-value=0.032  Score=43.02  Aligned_cols=64  Identities=13%  Similarity=0.071  Sum_probs=47.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhccc
Q 013535           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (441)
Q Consensus        29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~   97 (441)
                      .+.|.++|+||++++|++.++++|.||......+ .+|++--.|.+...+.     +..++.|.+.|...
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~~i   66 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELREI   66 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHhcC
Confidence            5789999999999999999999999999887755 3466665677643321     22456666666553

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.35  E-value=0.024  Score=42.37  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=38.0

Q ss_pred             EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEE
Q 013535           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNV   73 (441)
Q Consensus        30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~V   73 (441)
                      +.|.++|++|++++++.+|+++|+||.+......  ++...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            5788999999999999999999999999998764  3677666766

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.25  E-value=0.032  Score=42.07  Aligned_cols=46  Identities=15%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEE
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVT  163 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~  163 (441)
                      .+.+.++|+||.|++++..|+++|+||.+....+.+ +...-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            578899999999999999999999999988877653 3444444443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.21  E-value=0.025  Score=43.19  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=34.7

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEE
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYV  375 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v  375 (441)
                      +-+...|+||.+++|++.|+++|+||.+......  ++.+.=.|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            4568999999999999999999999999887553  3445444444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK07431 aspartate kinase; Provisional

Probab=96.15  E-value=2.7  Score=45.88  Aligned_cols=191  Identities=14%  Similarity=0.178  Sum_probs=114.8

Q ss_pred             CCeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCC--
Q 013535           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS--   99 (441)
Q Consensus        25 ~~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~--   99 (441)
                      .+...|.|.+.   +.+|+.+++..+|++.|+||....   ..+..+ +|.|...+.     ++..+.|.+.+.....  
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence            35678888875   789999999999999999997444   233223 355533221     3456777777744322  


Q ss_pred             -CCCC----cceee-eecCCCCeEEEEEE-eCCCcchHHHHHHHHHhcCCeEEEEEEEe-eC--CeEEEEEEEEeCCCCC
Q 013535          100 -FAPS----LRSSV-GVMPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWT-HN--DRAAAVVHVTDHSTGY  169 (441)
Q Consensus       100 -~~~~----~~~~v-~~~~~~~~t~i~v~-~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~--~~~~dvF~V~~~~~g~  169 (441)
                       +.|.    ....+ ......+...|++. .++.+|+++++...|+++|++|..-.... .+  +...-.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence             1111    00111 12334566666665 46889999999999999999998775432 12  12333444433     


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEcCCC
Q 013535          170 AIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEK  249 (441)
Q Consensus       170 ~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~  249 (441)
                           +...++...+.+ |.....                                             .-.+.+   ..
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~---------------------------------------------~~~i~~---~~  517 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP---------------------------------------------GAEVED---GP  517 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC---------------------------------------------CceEEE---eC
Confidence                 112222222222 221110                                             001111   12


Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEE
Q 013535          250 DYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGM  283 (441)
Q Consensus       250 ~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~  283 (441)
                      +...|.|.+.   .+||+++++..+|++.|++|....
T Consensus       518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            4567788775   789999999999999999996543

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.04  E-value=0.058  Score=39.33  Aligned_cols=61  Identities=23%  Similarity=0.297  Sum_probs=43.3

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe-eEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~-~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +.|.+.|+||++.+|+..|.+++++|.+..+...++. ..-.|.+...     +......+.+.|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            4678999999999999999999999999998876633 2223333222     23455666666654

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.00  E-value=0.058  Score=41.13  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI   74 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~   74 (441)
                      +.+.+..+|+||.+++++..|+++|+||.+....-  ..+...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            57899999999999999999999999999876653  345666556663

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.00  E-value=0.013  Score=45.32  Aligned_cols=71  Identities=23%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCe-EEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~-~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (441)
                      |++.|+-||-.|+++|-+|..+|+-|.+|.|.-+  +++ .+-...+.+ ..+..+.......++...+...|.|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~-e~~~~~~~~~~r~~i~drv~~~lmg   76 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLL-EHDRLKLGGRQRSKVVDRVTKTLMG   76 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeec-CCCccccchHHHHHHHHHHHHHHhc
Confidence            6788999999999999999999999999999753  333 443333333 2344455555567777777777654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=95.98  E-value=0.044  Score=41.25  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI  365 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~  365 (441)
                      .+.+...|+||.|++|++.|++++++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            47789999999999999999999999998887665

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.90  E-value=0.011  Score=44.80  Aligned_cols=44  Identities=18%  Similarity=0.221  Sum_probs=34.6

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  375 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v  375 (441)
                      +-+.+.|+||+|.+|+..|.+.|+||.+....+.++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999988766555444444443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.88  E-value=0.039  Score=42.05  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=37.4

Q ss_pred             EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEc
Q 013535           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVID   75 (441)
Q Consensus        30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~   75 (441)
                      +.+..+|+||.++++++.|+++|+||.+.....  .++...-.|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            567899999999999999999999999887754  4566666666633

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=95.86  E-value=0.064  Score=40.13  Aligned_cols=44  Identities=27%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEE
Q 013535           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNV   73 (441)
Q Consensus        30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~V   73 (441)
                      +.+.++|+||.+++++..|+++|+||....... . ++...-.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            567899999999999999999999999887765 2 4555544544

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.85  E-value=0.062  Score=41.28  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~  152 (441)
                      +.+.-+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6778899999999999999999999998876554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.83  E-value=0.11  Score=40.89  Aligned_cols=48  Identities=27%  Similarity=0.290  Sum_probs=39.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~  164 (441)
                      +.+.+..+|+||.|+++...|+++|+||.+-...... +...-.|+|.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            4567778999999999999999999999999876653 45666788865

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK08577 hypothetical protein; Provisional

Probab=95.82  E-value=0.094  Score=45.88  Aligned_cols=70  Identities=23%  Similarity=0.345  Sum_probs=49.0

Q ss_pred             cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       111 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .+....+.+.+.+.|+||+|++|+.+|+++|+||.+....+..  +.+.-.|.+.-+  ..    +..++.+.+.|.+
T Consensus        51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~--~~----~~~l~~l~~~L~~  122 (136)
T PRK08577         51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS--KS----DIDLEELEEELKK  122 (136)
T ss_pred             CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC--Cc----hhhHHHHHHHHHc
Confidence            3445689999999999999999999999999999998877743  333334433321  11    1345666666543

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.79  E-value=0.012  Score=44.52  Aligned_cols=44  Identities=25%  Similarity=0.303  Sum_probs=36.3

Q ss_pred             EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 013535           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV   73 (441)
Q Consensus        30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V   73 (441)
                      +++.+.|+||++++++..|+++|+||......+.+|.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            67899999999999999999999999877655555776655555

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.71  E-value=0.044  Score=41.42  Aligned_cols=55  Identities=11%  Similarity=0.253  Sum_probs=38.7

Q ss_pred             CCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          125 DRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       125 DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      |+||.|.+|+++|...|+||.+..+...  ++...-.+.+..  +      +...+.|.+.|.+.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~------~~~i~~l~~Ql~Kl   57 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--D------DREIEQLVKQLEKL   57 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--C------chhHHHHHHHHhcc
Confidence            7899999999999999999999999883  444444554433  1      23456777777653

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.64  E-value=0.026  Score=41.99  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~  153 (441)
                      +.+.-+|+||-|++++.+|+++|+||.+...+...
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            67888999999999999999999999988865543

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.63  E-value=0.08  Score=40.64  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI  365 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~  365 (441)
                      +.+..+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999999876554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.63  E-value=0.06  Score=40.65  Aligned_cols=56  Identities=18%  Similarity=0.385  Sum_probs=37.0

Q ss_pred             CccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          338 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       338 DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      |+||.|.+|+..|...|+||.+..+........-.+.++- .|.   +...++|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v-~~~---~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV-SGD---DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE-ES----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE-eeC---chhHHHHHHHHhc
Confidence            7899999999999999999999999874333222222321 121   2345667777776

>PRK08577 hypothetical protein; Provisional

Probab=95.61  E-value=0.18  Score=44.07  Aligned_cols=59  Identities=14%  Similarity=0.138  Sum_probs=44.2

Q ss_pred             EEEEeeCCCC--CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEE
Q 013535           16 RVVIDNNTCA--DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVI   74 (441)
Q Consensus        16 ~V~v~~~~~~--~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~V~   74 (441)
                      .+.+.+....  ....+.|.+.|+||++++++++|+++|+||.+....+ . ++.+...|.+.
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            4444444333  4678999999999999999999999999999888765 3 45555445553

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.58  E-value=0.12  Score=37.53  Aligned_cols=60  Identities=25%  Similarity=0.402  Sum_probs=42.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~  185 (441)
                      |.+.+.|+||.+..++..|.+++++|.+..+...+ +.....|.+..+       +...++.+.+.|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~   61 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-------DLEHLARIMRKLR   61 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            45778999999999999999999999999887755 334444544431       2334555555543

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=95.55  E-value=0.14  Score=45.57  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=52.1

Q ss_pred             EeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcc
Q 013535           19 IDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (441)
Q Consensus        19 v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~   96 (441)
                      +..........+.+.++|+||++++|+.+++++|+||....... .+|.+--.|.+...+.     ...++.|.+.|..
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~  134 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRN  134 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence            33334456679999999999999999999999999999887765 4576666676644321     1234555555554

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.43  E-value=0.12  Score=40.09  Aligned_cols=48  Identities=19%  Similarity=0.382  Sum_probs=37.3

Q ss_pred             EEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEEEEEEEcCCCC
Q 013535          333 ELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGN  381 (441)
Q Consensus       333 eV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d~F~v~d~~g~  381 (441)
                      -+...|+||-|++|...|+++|+||.+....-. +....=.|||.- .|.
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~-~~~   51 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF-EGH   51 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ECC
Confidence            345579999999999999999999999976544 345667888843 353

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.34  E-value=0.065  Score=37.04  Aligned_cols=35  Identities=31%  Similarity=0.509  Sum_probs=31.6

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG  366 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g  366 (441)
                      |.+.+.|+||++++|+..|.++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.24  E-value=0.75  Score=47.55  Aligned_cols=105  Identities=18%  Similarity=0.281  Sum_probs=68.1

Q ss_pred             eEEEEEE---ccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           27 ATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        27 ~~~v~V~---~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      ...|+|.   ..+++|.++++..+|+++|+||.-..... ... --.|.|...+.     ++..+.|.+.+....     
T Consensus       260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~~-~Is~~V~~~d~-----~~a~~~L~~~~~~~~-----  327 (401)
T TIGR00656       260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SET-SISLTVDETDA-----DEAVRALKDQSGAAG-----  327 (401)
T ss_pred             EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CCc-eEEEEEeHHHH-----HHHHHHHHHHHHhcC-----
Confidence            4467777   57889999999999999999997443221 121 22466632211     223344444331111     


Q ss_pred             cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEE
Q 013535          104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN  146 (441)
Q Consensus       104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~  146 (441)
                       ...+  ....+...|.+.|.   ++||+++++..+|++.|+||..
T Consensus       328 -~~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 -LDRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             -CceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence             0011  22457788888885   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.20  E-value=0.022  Score=44.14  Aligned_cols=66  Identities=17%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEE--EEEEcCCCCCCC-hHHHHHHHHHhcc
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDT--FYVTDVTGNPVD-PKIIDSIRRQIGH  397 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~--F~v~d~~g~~~~-~~~~~~l~~~l~~  397 (441)
                      -||+++.-||-.+||+|-+|..+++.|.+|.|.-+  +++..-+  |.+.+. +..++ +....++.+.+..
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~   72 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTK   72 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHH
Confidence            37899999999999999999999999999999754  5665554  444444 33343 3334555554444

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.10  E-value=0.098  Score=39.82  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=30.7

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIS  363 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~  363 (441)
                      ..+.+..+|+||.|..+++.|+++|+||.+....
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            4678899999999999999999999999988654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.03  E-value=0.16  Score=52.76  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=51.5

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-----CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-----NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-----~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .-...|.|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.|.-       .+.++++++.+.|++
T Consensus       324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            446899999999999999999999999999999998764     344444454433       245677888888765

>PRK04435 hypothetical protein; Provisional

Probab=94.98  E-value=0.22  Score=44.28  Aligned_cols=68  Identities=10%  Similarity=0.131  Sum_probs=49.2

Q ss_pred             CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHH
Q 013535          247 IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (441)
Q Consensus       247 ~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~  319 (441)
                      ..+..+.+.+.+.|+||+|++++.+|+..|+||........ +|.+.-.|.|...+.     ...++.|.+.|+
T Consensus        65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~  133 (147)
T PRK04435         65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLR  133 (147)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHH
Confidence            44567789999999999999999999999999998876554 465655566543211     125556655554

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=94.65  E-value=0.14  Score=35.35  Aligned_cols=35  Identities=37%  Similarity=0.615  Sum_probs=31.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~  153 (441)
                      |.+.++|+||++++++.+|+.+|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999987653

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK06635 aspartate kinase; Reviewed

Probab=94.38  E-value=0.95  Score=46.87  Aligned_cols=102  Identities=18%  Similarity=0.277  Sum_probs=66.9

Q ss_pred             ccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcceeeeecC
Q 013535           34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMP  112 (441)
Q Consensus        34 ~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~v~~~~  112 (441)
                      ..++||.++++..+|+++|+||.-...+. .+|..--.|.|...+.     ++..+.|.+ +......     ..+  ..
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~-----~~i--~~  336 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGA-----ESV--TY  336 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCc-----ceE--EE
Confidence            56789999999999999999999654443 3334554566633211     122333333 1111110     011  12


Q ss_pred             CCCeEEEEEEe---CCCcchHHHHHHHHHhcCCeEEEEE
Q 013535          113 TEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus       113 ~~~~t~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                      ..+...+.+.+   ++.||.++++..+|+++|+||....
T Consensus       337 ~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        337 DDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             cCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            35677888876   6899999999999999999998753

>PRK06635 aspartate kinase; Reviewed

Probab=94.31  E-value=0.95  Score=46.84  Aligned_cols=103  Identities=16%  Similarity=0.229  Sum_probs=67.9

Q ss_pred             CeEEEEEE-ecCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 013535          250 DYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---IER  324 (441)
Q Consensus       250 ~~t~I~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~---L~~  324 (441)
                      +...|+|. ..++||.++++..+|++.|+||......... |...-.|.|..         +..+...+.|.+.   +.-
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence            34445554 5678999999999999999999964333222 24444566542         2333344444442   110


Q ss_pred             h----cCCceEEEEEe---CCccchHHHHHHHHHHCCceEEEEE
Q 013535          325 R----ASEGLELELCT---EDRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       325 r----~~~~~~ieV~~---~DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      .    ......+.|.+   .|+||++++|.++|++.|+||....
T Consensus       332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            0    11245688866   5999999999999999999998853

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.16  E-value=0.22  Score=38.64  Aligned_cols=48  Identities=19%  Similarity=0.302  Sum_probs=37.5

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEcCCC
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTG  380 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d~~g  380 (441)
                      +-+...|+||-|+++...|+++|||+.+.+...... ..+=.|||. -+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd-~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVD-CEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEE-EEc
Confidence            445568999999999999999999999988765543 455688884 345

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK07334 threonine dehydratase; Provisional

Probab=94.05  E-value=0.33  Score=50.32  Aligned_cols=64  Identities=19%  Similarity=0.193  Sum_probs=48.1

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-----RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-----~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~  320 (441)
                      .+.|.|.+.||+|+|++|+.+|++.++||.+.+..+.     ++.+.-.|.|.      +.+.+.++.|...|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~------V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE------TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998765     35544444443      1233466777766654

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=94.04  E-value=0.2  Score=47.21  Aligned_cols=59  Identities=19%  Similarity=0.288  Sum_probs=44.2

Q ss_pred             CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHH
Q 013535          327 SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIID  389 (441)
Q Consensus       327 ~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~  389 (441)
                      ++.+.+-+.-.||||.+..|+..|.+++|||..+++...  |+.+.=..-+    ..+++++.++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~  206 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKD  206 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHh
Confidence            446788889999999999999999999999999999875  4444433333    4455545444

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.04  E-value=1.1  Score=46.37  Aligned_cols=101  Identities=13%  Similarity=0.143  Sum_probs=67.2

Q ss_pred             CCeEEEEEE---ecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 013535          249 KDYTVITMR---SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR  325 (441)
Q Consensus       249 ~~~t~I~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r  325 (441)
                      .+...|+|.   ..+++|+++++..+|++.|++|..-......  .--+|.|..         +..+++.+.|.+.+...
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~---------~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE---------TDADEAVRALKDQSGAA  326 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHhc
Confidence            356678887   6789999999999999999999744221111  222355532         23344444454433111


Q ss_pred             -------cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEE
Q 013535          326 -------ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRA  360 (441)
Q Consensus       326 -------~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A  360 (441)
                             ...-..|.|.+.   ++||+++++.++|.+.|+||...
T Consensus       327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence                   122456677775   79999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.00  E-value=0.28  Score=39.82  Aligned_cols=51  Identities=20%  Similarity=0.438  Sum_probs=40.2

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCC
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGN  381 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~  381 (441)
                      +.|-+...|+||-|+++-..|+++|||+.+....-.. ..-.=.|||. -+|.
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~   66 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK   66 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC
Confidence            5566677999999999999999999999999877554 3355588884 3454

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.89  E-value=0.039  Score=44.18  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=44.3

Q ss_pred             EEEEEeCC-CcchHHHHHHHHHhcCCeEEEEEEEee---------CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          118 SIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTH---------NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       118 ~i~v~~~D-rpGLl~~i~~~L~~~g~~I~~A~i~T~---------~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .|+|.|+| ..|+++.+|.+|+++|+||.+-+-.+.         .......|.|+.+    +. +   .+.++++|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~---~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-D---LEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-C---HHHHHHHHHH
Confidence            37899999 999999999999999999976554321         1245667777652    22 2   3677777765

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK06291 aspartate kinase; Provisional

Probab=93.73  E-value=2.8  Score=44.39  Aligned_cols=107  Identities=11%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             eEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           27 ATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        27 ~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      ...|+|.+.   +.+|+.+++.++|+++|+||.-....+...  --.|.|...+.     ++..+.|.+.+.....    
T Consensus       321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~--sIsf~V~~~d~-----~~av~~L~~~~~~~~~----  389 (465)
T PRK06291        321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSES--NISLVVDEADL-----EKALKALRREFGEGLV----  389 (465)
T ss_pred             EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCc--eEEEEEeHHHH-----HHHHHHHHHHHHHhcC----
Confidence            456777654   689999999999999999998654433221  12355633211     2334555555543110    


Q ss_pred             cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEE
Q 013535          104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus       104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                        ..+.  ...+...|.+.|.   +++|+.+++..+|+..|+||..-.
T Consensus       390 --~~i~--~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        390 --RDVT--FDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             --cceE--EeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence              0111  2346778888885   799999999999999999998444

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.44  E-value=0.051  Score=43.52  Aligned_cols=61  Identities=21%  Similarity=0.296  Sum_probs=41.8

Q ss_pred             EEEEEeCC-ccchHHHHHHHHHHCCceEEEEEEEe-----eC----CeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          331 ELELCTED-RVGLLSDITRIFRENSLSIKRAEIST-----IG----GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       331 ~ieV~~~D-rpGLL~~It~~l~~~~v~I~~A~i~T-----~g----~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +|+|.+.| ++|++++||++|+++|+||...+--+     .+    ....-.|.++   |.+.   ..+.|+++|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~---~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPA---DLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCC---CHHHHHHHHHH
Confidence            47899999 99999999999999999997655421     11    2344466664   3332   34566666654

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK08210 aspartate kinase I; Reviewed

Probab=93.30  E-value=2.8  Score=43.42  Aligned_cols=99  Identities=19%  Similarity=0.283  Sum_probs=65.6

Q ss_pred             CeEEEEEEccCC-CcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 013535           26 DATVIKVDSVNK-HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (441)
Q Consensus        26 ~~~~v~V~~~Dr-pGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  104 (441)
                      +...|+|...+. +|.+++++..|+++|+||.-...+..  .  -.|.+...         ..+.+.+.|....     .
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~~---------~~~~a~~~l~~~~-----~  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSDE---------DSEKAKEILENLG-----L  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcHH---------HHHHHHHHHHHhC-----C
Confidence            345667766555 99999999999999999996644322  1  23555321         1122233333321     0


Q ss_pred             ceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEE
Q 013535          105 RSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN  146 (441)
Q Consensus       105 ~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~  146 (441)
                        .+.  ...+...|.|.|.   ++||+++++..+|++.|+||..
T Consensus       332 --~v~--~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 --KPS--VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             --cEE--EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence              111  1346777888875   8999999999999999999974

>PRK11899 prephenate dehydratase; Provisional

Probab=93.28  E-value=0.37  Score=47.52  Aligned_cols=56  Identities=20%  Similarity=0.304  Sum_probs=43.7

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCCCCCh
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDP  385 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~~~~~  385 (441)
                      .+.|-+...|+||.|+++...|+++|||+.+....-.+ ....=.||| |..|..-++
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~  250 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDR  250 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCH
Confidence            45566666899999999999999999999999987554 446668888 555765443

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.27  E-value=0.51  Score=35.82  Aligned_cols=32  Identities=13%  Similarity=0.049  Sum_probs=27.3

Q ss_pred             EEEEecCCcchHHHHHHHHHhCCceEEEEEEEe
Q 013535          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT  286 (441)
Q Consensus       254 I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  286 (441)
                      +.|.-|||||-|.+++..++. |.||..-+-..
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~   32 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRN   32 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence            357889999999999999999 99998765544

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.26  E-value=0.53  Score=35.72  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             EEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       120 ~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .+.-+|+||-|..++.+++. |.||...+=.-.+.....++..-.      ..+++..+++.+.|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ------VPDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            56789999999999999999 999987754432212222222212      1135677888887765

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.23  E-value=0.55  Score=52.27  Aligned_cols=64  Identities=23%  Similarity=0.223  Sum_probs=48.9

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~  320 (441)
                      .+.|.|.+.||+|+|++|+.+++..++||.+.++.+.  ++.+.-.|.|.      +.+-..++.|...|..
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~L~~  731 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHHHhc
Confidence            4588999999999999999999999999999999875  46655555543      2233466777666653

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.19  E-value=0.5  Score=52.54  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      -...|.|.+.||+|+|++|+.+++..++||.+..+.+.  ++.+...|.|.-       .+.+++.+|.+.|..
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~  731 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ  731 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence            45688999999999999999999999999999998775  355555555543       245677888777654

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.03  E-value=1.1  Score=34.51  Aligned_cols=64  Identities=20%  Similarity=0.202  Sum_probs=43.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      +.+..+|+||-|+++..+|+++|+||.+-...... ....-.|+|.-  .+. . ++...+.+...|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~-~-~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGH-I-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECC-C-CCHHHHHHHHHHHH
Confidence            34455899999999999999999999998766543 35666777765  232 2 23344555555543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=92.96  E-value=0.51  Score=36.82  Aligned_cols=50  Identities=14%  Similarity=0.239  Sum_probs=38.8

Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCCC
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNP  382 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~~  382 (441)
                      +-+...|+||-|+++-..|+.+|+|+.+.+..... ...+=.|||. -+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id-~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD-CECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcCH
Confidence            44556899999999999999999999999877653 4456688884 34543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.33  E-value=0.74  Score=51.15  Aligned_cols=65  Identities=14%  Similarity=0.155  Sum_probs=50.5

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      -...|.|.+.||+|+|++|+.+++..++||.+..+.+.+ +.+...|.+.-       .+.+++.+|-..|..
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV  690 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            466889999999999999999999999999999987764 44455555543       235677777777653

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.24  E-value=0.48  Score=42.54  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=37.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCC-EEEEEEEE
Q 013535           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGG-WFMDVFNV   73 (441)
Q Consensus        29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g-~~~d~f~V   73 (441)
                      -+.+.+.|+||.+.++++.++++|.||..|+.+. .+| ..+.-|.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            4778899999999999999999999999999987 445 45533444

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.08  E-value=1  Score=50.07  Aligned_cols=65  Identities=3%  Similarity=-0.042  Sum_probs=48.7

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~  320 (441)
                      ..+.|.|.+.||+|+|++|+.+++..++||.+.+..+.+ +.+.-.|.|.      +.+-..++.|...|..
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT------ARDRVHLANIMRKIRV  690 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE------ECCHHHHHHHHHHHhC
Confidence            345888999999999999999999999999999987765 4544444443      2223467777666653

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=91.94  E-value=0.18  Score=44.87  Aligned_cols=60  Identities=15%  Similarity=0.224  Sum_probs=43.1

Q ss_pred             ChHHHHHHHhcCCC--EEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEE
Q 013535            2 DDEYAKLIRRMNPP--RVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS   61 (441)
Q Consensus         2 ~~~~~~~~~~~~~~--~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~   61 (441)
                      ||++-.+.++..+-  ...+....+-+..++.....+.||+++.+++.++++||+|.++-..
T Consensus        68 d~~L~~if~nl~P~a~l~~vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~  129 (167)
T COG2150          68 DEELRRIFENLEPVASLADVAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE  129 (167)
T ss_pred             CHHHHHHHHhccchhhHHHHHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence            56666667766652  2234344445556666767889999999999999999999977543

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=91.93  E-value=0.61  Score=48.14  Aligned_cols=56  Identities=23%  Similarity=0.383  Sum_probs=43.9

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe-eCCeeEEEEEEEcCCCCCCCh
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST-IGGKVKDTFYVTDVTGNPVDP  385 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T-~g~~~~d~F~v~d~~g~~~~~  385 (441)
                      .+.+-+...|+||.|+++-..|+.+|||+.+....- .+...+=.||| |..|..-++
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~  353 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSA  353 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCH
Confidence            455556678999999999999999999999999874 45557778988 555765443

>PRK06291 aspartate kinase; Provisional

Probab=91.84  E-value=7.9  Score=40.99  Aligned_cols=102  Identities=14%  Similarity=0.180  Sum_probs=68.6

Q ss_pred             CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013535          249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-  324 (441)
Q Consensus       249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~-  324 (441)
                      ++...|+|.+.   +.+|+++++..+|++.|++|......+..  .--.|.|..         ...++....|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~---------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE---------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence            45667888764   68999999999999999999764332222  222355443         2233334445444332 


Q ss_pred             h------cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEE
Q 013535          325 R------ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       325 r------~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      .      ...-.+|.|.+.   +++|++.++..+|.+.|+||.-..
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence            1      122457888876   799999999999999999998544

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.56  E-value=0.38  Score=50.02  Aligned_cols=60  Identities=25%  Similarity=0.340  Sum_probs=48.1

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHH
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIR  392 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~  392 (441)
                      ++.|-+.-.|+||.++.|+..|+++|+||.+.+..+.|+.+.-+|-+   ++ +++++.+++|+
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~  397 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALK  397 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHH
Confidence            47888899999999999999999999999999999889666665544   33 44555556665

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=91.50  E-value=2.2  Score=34.62  Aligned_cols=70  Identities=14%  Similarity=0.121  Sum_probs=49.4

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ..+.+.+..+|+||-|+++-..|+.+|+|+..-..... +....=.|||.-  .|. . + ..+..+-..|.+.|.
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDIG   83 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHhC
Confidence            45677777799999999999999999999998887664 344667888865  343 2 2 344444455555443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.48  E-value=1  Score=49.97  Aligned_cols=65  Identities=22%  Similarity=0.230  Sum_probs=50.3

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      -.+.|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.-       .+..++.+|-..|..
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT  674 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            467889999999999999999999999999999988763 44444454433       235677777777654

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK09034 aspartate kinase; Reviewed

Probab=91.36  E-value=7.2  Score=41.17  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             eEEEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           27 ATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        27 ~~~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      .+.|++.+   ++++|+.+++...|+++|+||.-.   +.+. .--.|.|...+-.    ...+..+.+.|......   
T Consensus       308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~~~~----~a~~~~l~~el~~~~~~---  376 (454)
T PRK09034        308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRERQLT----PKKEDEILAEIKQELNP---  376 (454)
T ss_pred             EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHHHhh----HHHHHHHHHHHHHhhCC---
Confidence            34556653   678999999999999999999854   2222 2234666443211    01112333333322210   


Q ss_pred             cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                        ..+.  ...+...|.+.|.   +.||+++++..+|+++|+||......+
T Consensus       377 --~~I~--~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        377 --DELE--IEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             --ceEE--EeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence              0111  2357788888763   789999999999999999998765433

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.30  E-value=1.5  Score=48.81  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=47.8

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHH
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~  319 (441)
                      ..+.|.|.+.||+|+|++|+.+++..+.||.+.++.+.. +.+.-.|.|.      +.+-..+..|...|.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L~  673 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKIK  673 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHHh
Confidence            345889999999999999999999999999999998774 5544344442      223346666666664

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=91.19  E-value=0.82  Score=44.87  Aligned_cols=55  Identities=18%  Similarity=0.366  Sum_probs=44.6

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEEEEEEEcCCCCCCC
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVD  384 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d~F~v~d~~g~~~~  384 (441)
                      .+.+-+..+|+||-|+++-..|+.+|||+.+....-. +....=.||| |-.|..-+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence            5777788889999999999999999999999998754 4556668888 55566544

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=90.94  E-value=0.95  Score=34.20  Aligned_cols=46  Identities=22%  Similarity=0.413  Sum_probs=35.8

Q ss_pred             CCeEEEEEEeC----CCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535          114 EEHTSIEFTGT----DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (441)
Q Consensus       114 ~~~t~i~v~~~----DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~  164 (441)
                      .+...|+|.++    |.||+++.+...|++.|+||....  |   ...+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            45677888887    799999999999999999998877  4   2356666654

>PRK08210 aspartate kinase I; Reviewed

Probab=90.78  E-value=3.4  Score=42.80  Aligned_cols=97  Identities=16%  Similarity=0.217  Sum_probs=65.4

Q ss_pred             CCeEEEEEEecCC-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--h
Q 013535          249 KDYTVITMRSKDR-PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--R  325 (441)
Q Consensus       249 ~~~t~I~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r  325 (441)
                      .+...|+|...+. +|.++++...|++.|+||......  ...  -+|.+..         +..+++.+.|.+. ..  .
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~  334 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTE--VVFTVSD---------EDSEKAKEILENL-GLKPS  334 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--Cce--EEEEEcH---------HHHHHHHHHHHHh-CCcEE
Confidence            3556777776665 999999999999999999876333  222  2355432         2333444444431 10  0


Q ss_pred             -cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEE
Q 013535          326 -ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKR  359 (441)
Q Consensus       326 -~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~  359 (441)
                       ...-..|.|.+.   ++||++.++.++|.+.|+||..
T Consensus       335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence             122456777775   8999999999999999999974

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=90.61  E-value=15  Score=38.69  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=70.3

Q ss_pred             CCeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCC
Q 013535           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (441)
Q Consensus        25 ~~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~  101 (441)
                      .+...|+|.+.   +++|..+++.+.|+++|+||.--........  ..|.+...+.     +...+.|++.......  
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~--  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA--  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence            34556666643   3459999999999999999974433322222  4577643321     2344455544433221  


Q ss_pred             CCcceeeeecCCCCeEEEEEEe---CCCcchHHHHHHHHHhcCCeEEEEE
Q 013535          102 PSLRSSVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus       102 ~~~~~~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                           ++.  ...+...|.++|   ...||..+++..+|++.|+||....
T Consensus       376 -----~v~--~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         376 -----EVE--VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             -----eEE--eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence                 112  234666777776   4778999999999999999999887

>PRK09034 aspartate kinase; Reviewed

Probab=90.60  E-value=13  Score=39.27  Aligned_cols=108  Identities=14%  Similarity=0.196  Sum_probs=68.0

Q ss_pred             CCeEEEEEEe---cCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 013535          249 KDYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR  325 (441)
Q Consensus       249 ~~~t~I~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r  325 (441)
                      .+.+.|++..   .+++|+++++...|+++|+||.-.   + .+..--+|.|.+.+   +.. ..+..+.+.|...+...
T Consensus       306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~~---~~~-a~~~~l~~el~~~~~~~  377 (454)
T PRK09034        306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRERQ---LTP-KKEDEILAEIKQELNPD  377 (454)
T ss_pred             CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHHH---hhH-HHHHHHHHHHHHhhCCc
Confidence            3456777764   678999999999999999999874   2 22222346665421   000 01123333333222100


Q ss_pred             ----cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEEEEe
Q 013535          326 ----ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEIST  364 (441)
Q Consensus       326 ----~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~i~T  364 (441)
                          ...-..|.+.+.   ++||+++++..+|.+.|+||....-.+
T Consensus       378 ~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        378 ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence                012457888653   889999999999999999998775433

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=90.39  E-value=1.7  Score=40.85  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=39.0

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV   73 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V   73 (441)
                      ...+.+.-.|+||...+++..|.++|+||...++..  .+|.++-+..|
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            345566679999999999999999999999999986  56788865555

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=90.37  E-value=0.72  Score=39.23  Aligned_cols=53  Identities=15%  Similarity=0.095  Sum_probs=41.2

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe-eEEEEEEEcCCCCC
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNP  382 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~-~~d~F~v~d~~g~~  382 (441)
                      .+.+-+...|+||-|++|-..|+.+|||+.+.+....... ..=.||| |.+|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            4566667799999999999999999999999987766544 4457878 434543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=90.29  E-value=13  Score=42.44  Aligned_cols=113  Identities=16%  Similarity=0.220  Sum_probs=72.5

Q ss_pred             CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (441)
Q Consensus        26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~  102 (441)
                      +...|+|.+.   +++|+.+++..+|+++|+||.-....+ +... ..|.|...+.     ++..+.|.+.+....... 
T Consensus       314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~~-  385 (819)
T PRK09436        314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKEG-  385 (819)
T ss_pred             CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhccC-
Confidence            4557788754   679999999999999999997554332 2222 2466644221     223444555443222100 


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEE
Q 013535          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI  149 (441)
Q Consensus       103 ~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i  149 (441)
                       ....+  ....+...|.+.|.   ++||+++++..+|.+.|+||+...-
T Consensus       386 -~~~~i--~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq  432 (819)
T PRK09436        386 -LLEPL--EVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ  432 (819)
T ss_pred             -CcceE--EEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence             00011  22357888888886   7899999999999999999986543

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.00  E-value=1.5  Score=48.24  Aligned_cols=66  Identities=23%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535          249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (441)
Q Consensus       249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~  320 (441)
                      ...+.|.|.+.||+|+|.+++.+|+..+.||......+.++ .+.-.|.+.      +.+-..+..|...|..
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l~~  691 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARLKQ  691 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHHhc
Confidence            45578999999999999999999999999999999888644 333333332      2223456666666643

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=89.89  E-value=1.3  Score=39.76  Aligned_cols=47  Identities=15%  Similarity=0.421  Sum_probs=37.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC--eEEEEEEEEe
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVTD  164 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~--~~~dvF~V~~  164 (441)
                      -+.+.+.++||.|.++++.++++|.||..|+.+..++  ...-.|.+.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg   52 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG   52 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence            3678899999999999999999999999999887543  4555555533

>PRK06382 threonine dehydratase; Provisional

Probab=89.49  E-value=2.1  Score=44.51  Aligned_cols=68  Identities=21%  Similarity=0.201  Sum_probs=50.1

Q ss_pred             CCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-----eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-----HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       112 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-----~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .....+.+.|.-+|+||-|++++.+|.++|+||.+.....     ..+...-+|.|...       +++..+.|.+.|.+
T Consensus       326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999998876541     13445556666441       24455677777765

>PLN02551 aspartokinase

Probab=89.17  E-value=21  Score=38.41  Aligned_cols=113  Identities=13%  Similarity=0.143  Sum_probs=68.4

Q ss_pred             CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (441)
Q Consensus        26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~  102 (441)
                      +.+.|+|.+.   +.+|.++++...|+++|++|.-..  +..  .-..|.+...+...  .+.+.+.+.+.+.+...+  
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~el~~~--  436 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE--VSISLTLDPSKLWS--RELIQQELDHLVEELEKI--  436 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHHhhcC--
Confidence            3456777654   689999999999999999998542  222  12246664332110  011111222222221110  


Q ss_pred             CcceeeeecCCCCeEEEEEEeC--CCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          103 SLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       103 ~~~~~v~~~~~~~~t~i~v~~~--DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                         ..+.  ...+...|.|+|.  ..||+++++-.+|+..|+||......+
T Consensus       437 ---~~V~--v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        437 ---AVVN--LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             ---CeEE--EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence               1122  2357777888864  689999999999999999998765433

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.99  E-value=0.81  Score=47.63  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=42.0

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV   73 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V   73 (441)
                      ....|.+.-+|+||.+++|+.+|+++|+||..-+..+.++.++-+|.+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence            556888899999999999999999999999988888888888866655

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=88.98  E-value=1.9  Score=47.56  Aligned_cols=67  Identities=25%  Similarity=0.327  Sum_probs=49.9

Q ss_pred             CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~-~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ..-...|.|.+.||+|+|++|+.+|+..++||.+....+..++ +.-.|.+.-       .+-.++.+|-..|..
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~~  691 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLKQ  691 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHhc
Confidence            4567889999999999999999999999999999998886433 333343322       234567777666643

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=88.89  E-value=3  Score=32.26  Aligned_cols=46  Identities=11%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~  164 (441)
                      +.+..+|+||-|+++-..|+.+|+|+..-...... ....=.|+|.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            44555899999999999999999999988776643 44666788765

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=88.88  E-value=15  Score=41.79  Aligned_cols=102  Identities=7%  Similarity=0.101  Sum_probs=68.9

Q ss_pred             CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013535          249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-  324 (441)
Q Consensus       249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~-  324 (441)
                      .+.+.|+|.+.   ++||+++++..+|++.|++|......+ .+ .--+|.|..         ...+.....|.+.+.. 
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se-~sIsf~V~~---------~d~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SE-YSISFCVPQ---------SDAAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CC-ceEEEEEeH---------HHHHHHHHHHHHHHHHH
Confidence            46678888765   689999999999999999996543332 22 222455543         2333334444443321 


Q ss_pred             ----hc------CCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEE
Q 013535          325 ----RA------SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       325 ----r~------~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                          ..      ..-.+|.|.+.   ++||++.++..+|.+.|+||....
T Consensus       382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence                11      22457888876   789999999999999999998664

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.57  E-value=1.8  Score=45.37  Aligned_cols=65  Identities=28%  Similarity=0.349  Sum_probs=47.0

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      .|.|.+...|+||.|++|+.+|.++++||.+..-....+.....+++++..    +...+.++.++|.+
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence            578999999999999999999999999999887554333455677776542    23344444455544

>PRK08818 prephenate dehydrogenase; Provisional

Probab=88.47  E-value=0.99  Score=46.32  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=38.2

Q ss_pred             ceEEEEEeC-CccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcC
Q 013535          329 GLELELCTE-DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDV  378 (441)
Q Consensus       329 ~~~ieV~~~-DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~  378 (441)
                      .+.+.+.-+ |+||.|++|+..|+.+||||.+.++ .......-.|||.-.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            456777776 9999999999999999999999999 333333334998544

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.42  E-value=3.1  Score=42.39  Aligned_cols=49  Identities=18%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEc
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD  377 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d  377 (441)
                      .+.|.|.-+||||-|+.|+..|.+.||||.+.+|.-..+....++.++.
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            4789999999999999999999999999999999766666555665543

>TIGR00657 asp_kinases aspartate kinase

Probab=88.07  E-value=8.4  Score=40.43  Aligned_cols=108  Identities=19%  Similarity=0.203  Sum_probs=66.5

Q ss_pred             CeEEEEEEccCC--CcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           26 DATVIKVDSVNK--HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        26 ~~~~v~V~~~Dr--pGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      +...|+|.+.+-  +|.++++...|+++|+||.-....+.. .. ..|.|...+.     ++..+.|.. +.....    
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~-~~~~~~----  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKS-ELNLSA----  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHH-HHHhcC----
Confidence            344566665333  799999999999999999865433322 11 2456643221     112222222 111110    


Q ss_pred             cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEE
Q 013535          104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus       104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                       ...+  ....+...|.+.|.   +.||+++++..+|+..|+||....
T Consensus       369 -~~~I--~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 -LSSV--EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             -cceE--EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence             0112  23457788888764   789999999999999999997765

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.90  E-value=4  Score=32.44  Aligned_cols=30  Identities=7%  Similarity=0.027  Sum_probs=24.7

Q ss_pred             EEEEEecCCcchHHHHHHHHHhCCceEEEEEE
Q 013535          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMV  284 (441)
Q Consensus       253 ~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i  284 (441)
                      ++.|.-||+||=|.+++.+|+  +.||.+..-
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y   32 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY   32 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence            578899999999999999999  667765433

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=87.66  E-value=2.3  Score=32.07  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             CeEEEEEEec----CCcchHHHHHHHHHhCCceEEEEE
Q 013535          250 DYTVITMRSK----DRPKLLFDIVCTLTDMQYVVFHGM  283 (441)
Q Consensus       250 ~~t~I~V~~~----DrpGLl~~i~~~L~~~glnI~~A~  283 (441)
                      +...|+|.++    |.||+.++++..|++.|+||....
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            4567888888    799999999999999999997655

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.41  E-value=4.5  Score=32.10  Aligned_cols=60  Identities=22%  Similarity=0.331  Sum_probs=37.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCC-HHHHHHHHHHHHH
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKD-PKRLSTIKELLFN  186 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~-~~~~~~l~~~L~~  186 (441)
                      ++.+.-+|+||-|++++.+|+  +.||....-.. ..+.+.-.+.+..       .+ ++..+++.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-------~~~~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-------ANGAEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-------CCcHHHHHHHHHHHHH
Confidence            467888999999999999999  55665333322 2233333333332       13 4566788777765

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=87.32  E-value=2.2  Score=43.48  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=42.9

Q ss_pred             CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (441)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~  164 (441)
                      -...+.+.|.-+|+||-++.++..|...|+||.+.+|.-..+....++.++-
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            3578999999999999999999999999999999999765555555555544

>PRK11899 prephenate dehydratase; Provisional

Probab=87.05  E-value=4.1  Score=40.15  Aligned_cols=49  Identities=14%  Similarity=0.074  Sum_probs=41.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD  164 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~  164 (441)
                      .|.|.+..+|+||.|+++-.+|+.+|+|+.+-..... ++.+.=.|||.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~  243 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI  243 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence            5777777799999999999999999999999888765 445667888866

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=86.99  E-value=1.8  Score=38.97  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=48.3

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE-eeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcccccccccc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIS-TIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRS  405 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~-T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~~~  405 (441)
                      .++.+.-.|.||.|.+++..|++.|+||.+..+. |..+....+=.++..     ++...+++.+.|.+ +.++.++
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~k-LidV~kV   75 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNK-LIDVLKV   75 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHh-hccceeE
Confidence            4677888899999999999999999999999986 443334444444332     23456667666665 4444333

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=86.94  E-value=2.4  Score=38.18  Aligned_cols=68  Identities=15%  Similarity=0.268  Sum_probs=47.1

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (441)
                      ...+.+.-.|.||.|+++++.|++.|+||.+-.+......-..-..+.-  .|    |+...+++...|.+...
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SG----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cC----CcchHHHHHHHHHhhcc
Confidence            4567788899999999999999999999999988754322232222222  12    23456788888776544

>TIGR00657 asp_kinases aspartate kinase

Probab=86.83  E-value=17  Score=38.16  Aligned_cols=102  Identities=14%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             CCeEEEEEEecCC--cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 013535          249 KDYTVITMRSKDR--PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA  326 (441)
Q Consensus       249 ~~~t~I~V~~~Dr--pGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~  326 (441)
                      .+...|+|.+.+-  +|+++++..+|++.|++|......+. + .--.|.|...         ..++..+.|........
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e-~sIs~~I~~~---------~~~~a~~~L~~~~~~~~  368 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-E-TSISFTVDKE---------DADQAKTLLKSELNLSA  368 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-C-ceEEEEEEHH---------HHHHHHHHHHHHHHhcC
Confidence            3456677766443  79999999999999999976542222 2 1123554431         22222222322111111


Q ss_pred             -------CCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEE
Q 013535          327 -------SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       327 -------~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                             ..-..|.|.+.   ++||++++|.++|++.|+||....
T Consensus       369 ~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                   22457888653   889999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK14630 hypothetical protein; Provisional

Probab=86.73  E-value=6.2  Score=34.91  Aligned_cols=87  Identities=10%  Similarity=0.027  Sum_probs=59.2

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEeC-
Q 013535          260 DRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE-  337 (441)
Q Consensus       260 DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~~-  337 (441)
                      |..-+-..+..++..+|+.+.+......++ +.+ .+++....|-.   -+.++.+-+.+...|....+..|.+||+++ 
T Consensus         6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV~---idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG   81 (143)
T PRK14630          6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSFG---VDTLCDLHKMILLILEAVLKYNFSLEISTPG   81 (143)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCCC---HHHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence            444556677888999999999999887654 555 44444444522   357888888887777665577999999975 


Q ss_pred             -CccchHHHHHHHHHH
Q 013535          338 -DRVGLLSDITRIFRE  352 (441)
Q Consensus       338 -DrpGLL~~It~~l~~  352 (441)
                       |||  |.....+-.-
T Consensus        82 ldRp--L~~~~df~r~   95 (143)
T PRK14630         82 INRK--IKSDREFKIF   95 (143)
T ss_pred             CCCc--CCCHHHHHHh
Confidence             555  3333333333

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=86.03  E-value=1.6  Score=41.75  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=33.8

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      ....+|.+.-.|-||.+++|+++|+..|.||.+.-+--
T Consensus        75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            35678888899999999999999999999999987754

>PRK09181 aspartate kinase; Validated

Probab=85.93  E-value=14  Score=39.32  Aligned_cols=102  Identities=13%  Similarity=0.107  Sum_probs=68.9

Q ss_pred             CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013535          249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-  324 (441)
Q Consensus       249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~-  324 (441)
                      .+.+.|+|.+.   +.+|+.+++...|++.|++|.  .+.+..  .--+|.|.+.       ...++++.+.|.+.+.. 
T Consensus       327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-------~~~~~~~~~~L~~~~~~~  395 (475)
T PRK09181        327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-------LKTLKRVIAELEKRYPNA  395 (475)
T ss_pred             CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-------hHHHHHHHHHHHHhcCCc
Confidence            35677788544   789999999999999999997  233332  2223555431       12344555555543321 


Q ss_pred             h--cCCceEEEEEeCC--ccchHHHHHHHHHHCCceEEEEE
Q 013535          325 R--ASEGLELELCTED--RVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       325 r--~~~~~~ieV~~~D--rpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      .  ...-.+|.|.+..  +||+.+++..+|.+.||||....
T Consensus       396 ~i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        396 EVTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             eEEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence            0  1335678887764  89999999999999999998765

>PRK09181 aspartate kinase; Validated

Probab=85.88  E-value=9.9  Score=40.41  Aligned_cols=105  Identities=14%  Similarity=0.202  Sum_probs=66.4

Q ss_pred             CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (441)
Q Consensus        26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~  102 (441)
                      +.+.|+|.+.   +.+|+.+++.+.|+++|+||.  -+.+..  .-..|.+...  .    . ..+.+.+.|......  
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~----~-~~~~~~~~L~~~~~~--  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L----K-TLKRVIAELEKRYPN--  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h----H-HHHHHHHHHHHhcCC--
Confidence            4556676543   689999999999999999998  222322  1224555332  1    1 112223333322210  


Q ss_pred             CcceeeeecCCCCeEEEEEEeCC--CcchHHHHHHHHHhcCCeEEEEEE
Q 013535          103 SLRSSVGVMPTEEHTSIEFTGTD--RPGLFSEVCAVLADLHCNVVNAEI  149 (441)
Q Consensus       103 ~~~~~v~~~~~~~~t~i~v~~~D--rpGLl~~i~~~L~~~g~~I~~A~i  149 (441)
                         ..+.   ..+...|.++|..  +||+.+++..+|++.|+||..-..
T Consensus       395 ---~~i~---~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        395 ---AEVT---VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             ---ceEE---ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence               0122   2567888888854  899999999999999999976543

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=85.60  E-value=7.7  Score=30.14  Aligned_cols=46  Identities=17%  Similarity=0.211  Sum_probs=37.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD  164 (441)
Q Consensus       119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~  164 (441)
                      +.+..+|+||-|+++-..|+.+|+|+..-..... +..+.=.|||.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            4455589999999999999999999998887664 345667788865

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.44  E-value=2.1  Score=46.14  Aligned_cols=61  Identities=21%  Similarity=0.462  Sum_probs=44.9

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHHHHHH
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR  393 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~~l~~  393 (441)
                      .+.+=+.-.|+||.+..|+..|.+++|||...++...  |+.+.=++-+    ..+++++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence            4566667799999999999999999999999998764  3444433433    44566666677664

>PRK14646 hypothetical protein; Provisional

Probab=85.14  E-value=11  Score=33.88  Aligned_cols=90  Identities=13%  Similarity=0.090  Sum_probs=61.3

Q ss_pred             chHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC--
Q 013535          263 KLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE--  337 (441)
Q Consensus       263 GLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~--  337 (441)
                      -+...+..++..+|+.+.+......++ +++ ..+|..++|..++ -+.++.+-..|.+.|..  ..+..|.+||+++  
T Consensus         8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVt-ldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl   85 (155)
T PRK14646          8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDIS-LDDCALFNTPASEEIENSNLLNCSYVLEISSQGV   85 (155)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCcc-HHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence            355667788999999999999998865 555 4444443343333 35788888888888863  4568999999975  


Q ss_pred             CccchHHHHHHHHHHCCce
Q 013535          338 DRVGLLSDITRIFRENSLS  356 (441)
Q Consensus       338 DrpGLL~~It~~l~~~~v~  356 (441)
                      |||  |...-.+-.-.|=.
T Consensus        86 dRp--L~~~~df~r~~G~~  102 (155)
T PRK14646         86 SDE--LTSERDFKTFKGFP  102 (155)
T ss_pred             CCc--CCCHHHHHHhCCCE
Confidence            454  55555554444433

>PRK14636 hypothetical protein; Provisional

Probab=84.86  E-value=8.5  Score=35.29  Aligned_cols=78  Identities=12%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             CcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC
Q 013535          261 RPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE  337 (441)
Q Consensus       261 rpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~  337 (441)
                      .+-+...+..++..+|+.+.+..+...++ +++ ..+|..++|..++ -+.++.+-..|...|..  ..+..|.+||+++
T Consensus         4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~l-rV~ID~~~~ggV~-lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP   81 (176)
T PRK14636          4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTL-QIMAERPDTRQLV-IEDCAALSRRLSDVFDELDPIEDAYRLEVSSP   81 (176)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEE-EEEEECCCCCCcC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence            34456667788999999999999888765 545 4444444332233 35888888899888863  3567899999975


Q ss_pred             --Ccc
Q 013535          338 --DRV  340 (441)
Q Consensus       338 --Drp  340 (441)
                        |||
T Consensus        82 GldRp   86 (176)
T PRK14636         82 GIDRP   86 (176)
T ss_pred             CCCCC
Confidence              565

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=84.70  E-value=2.2  Score=38.20  Aligned_cols=58  Identities=16%  Similarity=0.330  Sum_probs=37.6

Q ss_pred             EEEEEe--CCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEE-EEEEcCCCCCCChHHHHHH
Q 013535          331 ELELCT--EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDT-FYVTDVTGNPVDPKIIDSI  391 (441)
Q Consensus       331 ~ieV~~--~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~-F~v~d~~g~~~~~~~~~~l  391 (441)
                      ++|+..  .+.||+++.++..++++||+|+.+... ..+-.++. .||-  ..+|+....+.+|
T Consensus        95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~-dpe~~~e~~l~IV--te~~iP~~li~el  155 (167)
T COG2150          95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISE-DPELQEEPKLTIV--TERPIPGDLIDEL  155 (167)
T ss_pred             EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC-CcccCCCceEEEE--EeccCCHHHHHHH
Confidence            566554  678999999999999999999998743 33333332 3332  2345544444444

>PRK12483 threonine dehydratase; Reviewed

Probab=84.61  E-value=36  Score=36.65  Aligned_cols=136  Identities=12%  Similarity=0.100  Sum_probs=83.6

Q ss_pred             CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHH-HHHHHHHHHH-Hh---
Q 013535          249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER-ERVIQCLEAA-IE---  323 (441)
Q Consensus       249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~-~~l~~~L~~~-L~---  323 (441)
                      .....+.|.-+||||-|.+++..|...  ||.+..-......-..++......+.     +.. +.|.++|++. +.   
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPR-----HDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeEE
Confidence            456789999999999999999999988  88776554433222333333332221     233 6777777543 10   


Q ss_pred             -----------h-----hcC---CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCC
Q 013535          324 -----------R-----RAS---EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD  384 (441)
Q Consensus       324 -----------~-----r~~---~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~  384 (441)
                                 |     +.+   +--++.|.=+.|||=|.++++.|.. ..||...+=.-.|+....+|.     |..+.
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~YR~~~~~~a~v~v-----gi~~~  489 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHYRNHGAADGRVLA-----GLQVP  489 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-CcceeeeeecCCCCCceEEEE-----EEeeC
Confidence                       0     111   2347889999999999999999985 245555553333555555653     22122


Q ss_pred             hHHHHHHHHHhcc
Q 013535          385 PKIIDSIRRQIGH  397 (441)
Q Consensus       385 ~~~~~~l~~~l~~  397 (441)
                      +++.+++.+.|.+
T Consensus       490 ~~~~~~~~~~l~~  502 (521)
T PRK12483        490 EDERAALDAALAA  502 (521)
T ss_pred             hhHHHHHHHHHHH
Confidence            3455677776655

>PRK14634 hypothetical protein; Provisional

Probab=84.47  E-value=12  Score=33.65  Aligned_cols=89  Identities=19%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             cchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC-
Q 013535          262 PKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE-  337 (441)
Q Consensus       262 pGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~-  337 (441)
                      ..+...+..++..+|+.+.+..+...++ +++ ..+|...+|..++ -+.++.+-..|...|..  ..+..|.+||+++ 
T Consensus         7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   84 (155)
T PRK14634          7 PDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDVS-LDDCAGFSGPMGEALEASQLLTEAYVLEISSPG   84 (155)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCccc-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence            3455566788899999999999988764 555 4444545564343 25788888889888863  3467899999975 


Q ss_pred             -CccchHHHHHHHHHHCC
Q 013535          338 -DRVGLLSDITRIFRENS  354 (441)
Q Consensus       338 -DrpGLL~~It~~l~~~~  354 (441)
                       |||  |...-.+-.-.|
T Consensus        85 ldRp--L~~~~~f~r~~G  100 (155)
T PRK14634         85 IGDQ--LSSDRDFQTFRG  100 (155)
T ss_pred             CCCc--CCCHHHHHHhCC
Confidence             555  444444444434

>PRK06382 threonine dehydratase; Provisional

Probab=84.42  E-value=6.5  Score=40.84  Aligned_cols=66  Identities=18%  Similarity=0.207  Sum_probs=46.8

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEE----e-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhccc
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS----S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~----t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~   97 (441)
                      ..+.+.|..+|+||-|++++..|.++|+||.+....    . ..+...-.|.|... +     ++..+.|.+.|...
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~-----~~~~~~v~~~L~~~  399 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-G-----QDHLDRILNALREM  399 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-C-----HHHHHHHHHHHHHC
Confidence            457899999999999999999999999999977664    1 23555555666433 1     22334556666543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=84.37  E-value=2.4  Score=43.48  Aligned_cols=49  Identities=14%  Similarity=0.175  Sum_probs=39.1

Q ss_pred             CeEEEEEEeC-CCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535          115 EHTSIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (441)
Q Consensus       115 ~~t~i~v~~~-DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~  164 (441)
                      ..+.+.+.-+ |+||.|++|..+|+.+|+||.+-.+ .......-.|+|.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            5677777776 9999999999999999999999998 43333444488765

>PRK08198 threonine dehydratase; Provisional

Probab=83.82  E-value=8.4  Score=39.88  Aligned_cols=68  Identities=16%  Similarity=0.324  Sum_probs=47.2

Q ss_pred             CCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-----CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-----NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       112 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-----~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .......+.|.-+|+||-|+++...++++|.||.+....-.     .+.+.-.+.+.-       .+++..+.|.+.|++
T Consensus       323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~l~~~L~~  395 (404)
T PRK08198        323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET-------RGPEHIEEILDALRD  395 (404)
T ss_pred             hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            34566789999999999999999999999999998876532     122222222211       135566777777654

>PLN02317 arogenate dehydratase

Probab=83.73  E-value=4.4  Score=41.66  Aligned_cols=55  Identities=18%  Similarity=0.305  Sum_probs=41.5

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe---------------eEEEEEEEcCCCCCCC
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK---------------VKDTFYVTDVTGNPVD  384 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~---------------~~d~F~v~d~~g~~~~  384 (441)
                      .+.|-+.-.|+||.|+++-.+|+.+|||+.+.+..-...+               -.=.||| |-+|..-+
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d  352 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD  352 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC
Confidence            3566667789999999999999999999999987654433               2448888 44465433

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=83.15  E-value=8.7  Score=39.36  Aligned_cols=67  Identities=19%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-----eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-----HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-----~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ......+.|.-+|+||.|++++..++++|.||.+..-..     ..+.+.-.+.+..  .     +++..+.|.+.|.+
T Consensus       302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet--~-----~~~~~~~i~~~L~~  373 (380)
T TIGR01127       302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET--R-----GKEHLDEILKILRD  373 (380)
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe--C-----CHHHHHHHHHHHHH
Confidence            345668999999999999999999999999999875442     1234444444433  1     24555677777654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=82.86  E-value=7.5  Score=39.86  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEE
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMV  284 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i  284 (441)
                      ....+.|..+|+||.|.+++..+++.|.||.+-.-
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~  338 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDH  338 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEe
Confidence            34478999999999999999999999999987643

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PLN02551 aspartokinase

Probab=82.62  E-value=54  Score=35.31  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=65.6

Q ss_pred             CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH---HH
Q 013535          249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA---AI  322 (441)
Q Consensus       249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~---~L  322 (441)
                      .+.+.|+|.+.   +.+|+++++...|+++|++|.-.  .+..  .--+|.|...+-.      ..+.+++.+.+   .|
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~------~~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLW------SRELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence            45677888655   68999999999999999999865  2322  2223555432111      11122222222   12


Q ss_pred             hh--h---cCCceEEEEEeC--CccchHHHHHHHHHHCCceEEEEE
Q 013535          323 ER--R---ASEGLELELCTE--DRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       323 ~~--r---~~~~~~ieV~~~--DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      ..  .   ...-.+|.|.+.  .+||+++++-.+|.+.||||....
T Consensus       434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs  479 (521)
T PLN02551        434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS  479 (521)
T ss_pred             hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE
Confidence            21  0   122356666654  689999999999999999998766

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=82.39  E-value=2.6  Score=40.45  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=45.0

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEE--EEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ--EFYIRHVDGLPISSEAERERVIQCLEAA  321 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d--~F~V~~~~g~~i~~~~~~~~l~~~L~~~  321 (441)
                      ..+|.+...|.||.+.+|+++|+..|+||.+--+.-....++-  +..++-.+       .-+++.++.|++.
T Consensus        77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd-------~VveQa~rQiedl  142 (309)
T KOG2663|consen   77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD-------GVVEQARRQIEDL  142 (309)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH-------HHHHHHHHHHHHh
Confidence            4568999999999999999999999999998877655444443  34443221       2455555555543

>PRK14645 hypothetical protein; Provisional

Probab=82.20  E-value=15  Score=32.83  Aligned_cols=90  Identities=22%  Similarity=0.227  Sum_probs=60.7

Q ss_pred             CcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh--cCCceEEEEEeC
Q 013535          261 RPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE  337 (441)
Q Consensus       261 rpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r--~~~~~~ieV~~~  337 (441)
                      ...+-..+..++..+|+.+.+..+...++ +++- .+|...+|..++- +.++.+-..|...|...  .+..|.+||+++
T Consensus         8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSP   85 (154)
T PRK14645          8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESP   85 (154)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCC
Confidence            33456667889999999999999988764 5554 4444333433432 57888888888888643  467899999975


Q ss_pred             --CccchHHHHHHHHHHCC
Q 013535          338 --DRVGLLSDITRIFRENS  354 (441)
Q Consensus       338 --DrpGLL~~It~~l~~~~  354 (441)
                        |||  |...-.+-.-.|
T Consensus        86 GldRp--L~~~~df~r~~G  102 (154)
T PRK14645         86 GPKRP--LFTARHFERFAG  102 (154)
T ss_pred             CCCCC--CCCHHHHHHhCC
Confidence              555  444444444444

>PRK06349 homoserine dehydrogenase; Provisional

Probab=82.03  E-value=6.5  Score=41.15  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=40.9

Q ss_pred             CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (441)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~  164 (441)
                      ....+.|.+...|+||.|++|+++|.++|+||.+.......+....++.+++
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            3456889999999999999999999999999998765543334445566666

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=81.94  E-value=2.5  Score=45.45  Aligned_cols=61  Identities=16%  Similarity=0.415  Sum_probs=44.9

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHHHHHH
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR  393 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~~l~~  393 (441)
                      .+.+-+.-.|+||.+..|+..|.+++|||...++...  |+.+.=.+.+    ..+++++.+++|++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~  513 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA  513 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence            4556666789999999999999999999999998754  4444433333    44566667777764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=81.89  E-value=8.2  Score=32.78  Aligned_cols=49  Identities=12%  Similarity=0.137  Sum_probs=39.1

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~  164 (441)
                      .+.+.+..+|+||-|+++-..|+.+|+|+..-...... ....=.|+|.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            56677777999999999999999999999988877653 34555777755

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09224 threonine dehydratase; Reviewed

Probab=81.43  E-value=59  Score=34.87  Aligned_cols=108  Identities=14%  Similarity=0.108  Sum_probs=71.9

Q ss_pred             CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-H-----
Q 013535          249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA-I-----  322 (441)
Q Consensus       249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~-L-----  322 (441)
                      .....+.|.-|||||-|.+++..|.  +.||..-+-.-.+..-..+|+.....+.    +...+.|.+.|++. +     
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l  399 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL  399 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence            3466889999999999999999999  6788775544333222334443332221    11266777777543 1     


Q ss_pred             h---------h-----hcC---CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE
Q 013535          323 E---------R-----RAS---EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS  363 (441)
Q Consensus       323 ~---------~-----r~~---~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~  363 (441)
                      .         |     +.+   .--...+.=+.|||-|-+....|. -+-||...+=.
T Consensus       400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence            0         1     111   134788999999999999999666 77899988864

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=81.33  E-value=8  Score=38.04  Aligned_cols=50  Identities=20%  Similarity=0.255  Sum_probs=41.8

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD  164 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~  164 (441)
                      ..|.|.+..+|+||.|+++-++|+.+|+|...-..... .+.+.=.|||.-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~  243 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI  243 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence            57888888889999999999999999999988877654 445667788765

>PRK09084 aspartate kinase III; Validated

Probab=81.03  E-value=23  Score=37.33  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=62.3

Q ss_pred             CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (441)
Q Consensus        26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~  102 (441)
                      +...|+|.+.   +.+|.++++...|+++|+||.-... +.   .-..|.+...+-.........+.+.+.|...     
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-se---~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~-----  375 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-SE---VSVSLTLDTTGSTSTGDTLLTQALLTELSQL-----  375 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-cC---cEEEEEEechhhhhhhhHHHHHHHHHHHhcC-----
Confidence            4456777654   6899999999999999999985532 12   1234666432211000001223333333221     


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCC
Q 013535          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHC  142 (441)
Q Consensus       103 ~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~  142 (441)
                         ..+..  ..+...|.+.|.   ++||+++++..+|+..++
T Consensus       376 ---~~i~~--~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        376 ---CRVEV--EEGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             ---CeEEE--ECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence               11222  457788888886   789999999999987533

>PRK08198 threonine dehydratase; Provisional

Probab=80.81  E-value=13  Score=38.52  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEE
Q 013535          249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN  285 (441)
Q Consensus       249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~  285 (441)
                      .....+.|.-+|+||-|.++...+++.|.||.+....
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            4456899999999999999999999999999987654

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=80.25  E-value=14  Score=28.75  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=26.3

Q ss_pred             EEEEE---eCCccchHHHHHHHHHHCCceEEEEE
Q 013535          331 ELELC---TEDRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       331 ~ieV~---~~DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      .|+|.   ..++||++++|..+|+++|+||....
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~   36 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT   36 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence            45552   46889999999999999999999874

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	441
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1u8s_A	192	Glycine cleavage system transcriptional repressor,	3e-07
1u8s_A	192	Glycine cleavage system transcriptional repressor,	1e-05
2nyi_A	195	Unknown protein; protein structure initiative, PSI	2e-05
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 3e-14
 Identities = 69/437 (15%), Positives = 134/437 (30%), Gaps = 134/437 (30%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           +D  +       +  ++ I +       ++K     ++ +L     VL +V         
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENCLL-----VLLNV--------- 253

Query: 61  SSDGGWFMDVFNVIDCDGKKI----RDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEH 116
             +     + FN + C   KI    R K+V D++     T                + +H
Sbjct: 254 -QNA-KAWNAFN-LSC---KILLTTRFKQVTDFLSAATTTH--------------ISLDH 293

Query: 117 TSIEFTGTDRPGLFS------------EVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
            S+  T  +   L              EV         +++   I           HV  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 165 HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLS--------PPGIMNRERRLHQI 216
                      +L+TI E   NVL    ++RK    LS        P  ++        +
Sbjct: 353 ----------DKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILL-------SL 394

Query: 217 MFDDRDYERVEKAVGRVEDKS---SRPQVTVLNIEKDYTVITMRSKDRPKL--------- 264
           ++ D     V   V ++   S    +P+ + ++I   Y  + ++ ++   L         
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 265 ------LFDIVCTLTDM---QYVVFHGMVNTGRTEAYQEF---Y---------IRHVDGL 303
                   D++    D     ++  H + N    E    F   +         IRH D  
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRH-DST 512

Query: 304 PISSEAERERVIQCL----------EAAIERRASEGLE-LELCTED----------RVGL 342
             ++       +Q L          +   ER  +  L+ L    E+          R+ L
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

Query: 343 LSDITRIFRENSLSIKR 359
           +++   IF E    ++R
Sbjct: 573 MAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 40/299 (13%), Positives = 89/299 (29%), Gaps = 70/299 (23%)

Query: 180 IKELLFNVL--RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDK- 236
           ++++  ++L     D        +     ++   RL   +   ++ E V+K V  V    
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRIN 90

Query: 237 --------SSRPQVTVLNIEK----------DYTVITMRSKDRPKLLFDI---VCTLTDM 275
                    +  +   +              D  V    +  R +    +   +  L   
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 276 QYVVFHGMVNTGRT----EAYQEFYIRHVDGLPI--------SSEAERERVIQCLEAAIE 323
           + V+  G++ +G+T    +    + ++      I        +S      ++Q L   I+
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 324 RRASEGLELELCTEDRVGLLSD-ITRIFRE----NSLSIKRAEISTIGGKVKDTF----- 373
              +   +     + R+  +   + R+ +     N L +    +     K  + F     
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQN--AKAWNAFNLSCK 267

Query: 374 --------YVTDVTGNPVDPKIIDSIRRQIGHTKLQVKR--STILAPKP---PKETTTG 419
                    VTD          I      +  T  +VK      L  +P   P+E  T 
Sbjct: 268 ILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 2/129 (1%)

Query: 29  VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVID 88
           VI     ++ GI  +V++++      I  + I+  G  F  +  +        R +  + 
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLP 67

Query: 89  YIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148
            + Q+   D        S            +     D+ GL  +     A     + +  
Sbjct: 68  LLGQQH--DLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS 125

Query: 149 IWTHNDRAA 157
             T +    
Sbjct: 126 AQTISKDKL 134

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           M   +H  I   GTDRPG+ +EV  ++    CN++++ I         ++ ++
Sbjct: 1   MSLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 53

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 29  VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVID 88
           V+ V   ++ GI+      L +++  ++ + ++  GG F  +  V          +  ++
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALE 66

Query: 89  YIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148
                 +     A S+        T E+  +   G D  G+   V AVLA    N+V  E
Sbjct: 67  SALPGFQISTRRASSVAERHVSPDTREYE-LYVEGPDSEGIVEAVTAVLAKKGANIVELE 125

Query: 149 IWTHND 154
             T   
Sbjct: 126 TETLPA 131

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
             I   G D+ G+ +++  V++    N+    +   +      + +        +K+  +
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 177 LSTI 180
           L+T+
Sbjct: 59  LTTL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.75
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.71
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.67
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.95
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.76
2f06_A	144	Conserved hypothetical protein; structural genomic	98.54
2f06_A	144	Conserved hypothetical protein; structural genomic	98.44
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	98.14
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.09
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.07
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.88
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.83
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.8
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.78
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.76
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.74
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.69
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.56
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.55
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.44
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.4
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.24
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.23
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.2
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.2
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.05
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.05
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.03
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.98
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.93
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.84
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.82
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.56
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.48
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.27
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.2
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.17
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.17
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.9
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.72
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.46
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.29
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.98
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.96
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.91
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.59
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	92.57
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	91.73
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.44
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	91.4
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	90.8
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.38
3luy_A	329	Probable chorismate mutase; structural genomics, A	89.94
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	88.11
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	87.46
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	86.93
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	86.51
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	84.77
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	81.94
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	81.83
3luy_A	329	Probable chorismate mutase; structural genomics, A	80.1

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=2.4e-18  Score=159.07  Aligned_cols=143  Identities=13%  Similarity=0.104  Sum_probs=113.5

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-----
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER-----  324 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~-----  324 (441)
                      ..++|+|+|+|||||+++++++|+++|+||.+|++++..|.+.-.|.|.....   ....+++.|++.|...+..     
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeE
Confidence            35789999999999999999999999999999999998775554788765421   2223577777777644321     


Q ss_pred             --------hcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC--CeeEEEEEEEcCCCCCCChHHHHHHHHH
Q 013535          325 --------RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQ  394 (441)
Q Consensus       325 --------r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g--~~~~d~F~v~d~~g~~~~~~~~~~l~~~  394 (441)
                              .....++|+|.++|||||+++|+++|+++|+||..++..|.+  +++.+.||++...+.| .+.. ++|+++
T Consensus        81 ~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~  158 (195)
T 2nyi_A           81 SVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTA  158 (195)
T ss_dssp             CC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHH
T ss_pred             EEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHH
Confidence                    012368999999999999999999999999999999999998  7789999998765544 2334 777777


Q ss_pred             hcc
Q 013535          395 IGH  397 (441)
Q Consensus       395 l~~  397 (441)
                      |..
T Consensus       159 l~~  161 (195)
T 2nyi_A          159 LSR  161 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.75  E-value=1.9e-17  Score=152.91  Aligned_cols=156  Identities=19%  Similarity=0.185  Sum_probs=112.9

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCC---CCC
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FAP  102 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~---~~~  102 (441)
                      ..++|+|+|+||||||++||++|+++|+||++|++++..|.+.-.|.|..+..   ......+.|++.|.....   +..
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeE
Confidence            35799999999999999999999999999999999985555444788864421   112345677777764321   110


Q ss_pred             CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHH
Q 013535          103 SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTI  180 (441)
Q Consensus       103 ~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l  180 (441)
                      .....-. ......++|+|.|+||||+++.|+++|+++|+||.+++..|.+  ++..+.|++... .+.+  ++.. +.|
T Consensus        81 ~~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l  155 (195)
T 2nyi_A           81 SVAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEV  155 (195)
T ss_dssp             CC----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHH
T ss_pred             EEEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHH
Confidence            0000001 3345679999999999999999999999999999999999977  556788888762 3222  2345 788


Q ss_pred             HHHHHHhhc
Q 013535          181 KELLFNVLR  189 (441)
Q Consensus       181 ~~~L~~~L~  189 (441)
                      ++.|.....
T Consensus       156 ~~~l~~~a~  164 (195)
T 2nyi_A          156 VTALSRVEE  164 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.71  E-value=1.4e-16  Score=146.52  Aligned_cols=139  Identities=17%  Similarity=0.197  Sum_probs=109.5

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh------
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER------  324 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~------  324 (441)
                      ..+|+|+|+||||++++++++|+++|+||.++++.+..|.+.-.|.|..+       ....+.|++.|.+....      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence            46899999999999999999999999999999999988877668887642       13677888888765421      


Q ss_pred             --hc--------CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC----eeEEEEEEEcCCCCCCChHHHHH
Q 013535          325 --RA--------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG----KVKDTFYVTDVTGNPVDPKIIDS  390 (441)
Q Consensus       325 --r~--------~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~----~~~d~F~v~d~~g~~~~~~~~~~  390 (441)
                        +.        ...++|+|.++||||++++|+++|+++|+||.+++..|.++    ++.+.||++...+.| ++...++
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~  157 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQ  157 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHH
Confidence              11        12579999999999999999999999999999999999985    689999998764443 2234567


Q ss_pred             HHHHhcc
Q 013535          391 IRRQIGH  397 (441)
Q Consensus       391 l~~~l~~  397 (441)
                      |+++|..
T Consensus       158 l~~~l~~  164 (192)
T 1u8s_A          158 LQEEFDA  164 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777764

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.67  E-value=1.5e-15  Score=139.75  Aligned_cols=156  Identities=12%  Similarity=0.093  Sum_probs=106.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcce
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~  106 (441)
                      ..+|+|+|+||||+|++++++|+++|+||+++++++.+|.+.-.|.|..+. .  ..+++.+.|.+.+.. ..+.....+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-~--~~~~l~~~L~~~~~~-~~~~~~~~~   81 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-S--NITRVETTLPLLGQQ-HDLITMMKR   81 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-H--HHHHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-C--CHHHHHHHHHHHHHh-cCCEEEEEe
Confidence            478999999999999999999999999999999998767666688886432 0  112233444433311 111000000


Q ss_pred             e--eeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC----eEEEEEEEEeCCCCCCCCCHHHHHHH
Q 013535          107 S--VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND----RAAAVVHVTDHSTGYAIKDPKRLSTI  180 (441)
Q Consensus       107 ~--v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~----~~~dvF~V~~~~~g~~~~~~~~~~~l  180 (441)
                      .  -........+.|+|.++||||++++|+.+|+++|+||.+++..|.+.    +..+.|++... .+.+  ++...+.|
T Consensus        82 ~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~~~~~l  158 (192)
T 1u8s_A           82 TSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGCNLMQL  158 (192)
T ss_dssp             ECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTSCHHHH
T ss_pred             CCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCCCHHHH
Confidence            0  00133446789999999999999999999999999999999999874    56788887662 2221  22245788


Q ss_pred             HHHHHHhhc
Q 013535          181 KELLFNVLR  189 (441)
Q Consensus       181 ~~~L~~~L~  189 (441)
                      +++|.....
T Consensus       159 ~~~l~~~~~  167 (192)
T 1u8s_A          159 QEEFDALCT  167 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876554

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.95  E-value=1.8e-08  Score=102.78  Aligned_cols=150  Identities=12%  Similarity=0.045  Sum_probs=101.8

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcc
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLR  105 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~  105 (441)
                      ....|+|.|+||||+.+.++++|+++|+||++++.+..+|++.-...+..+... .+.+.+.+.+.. +.....+    .
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~~~~l~~~l~~-~~~~~~~----~   84 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-ADGPALRHDVEA-AIRKVGL----D   84 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HTSHHHHHHHHH-HHHHTTC----E
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CCHHHHHHHHHH-HHHHcCe----E
Confidence            357899999999999999999999999999999999888887766666433211 111233344432 2222221    1


Q ss_pred             eeeee------cCCCCeEEEEEEeCC-CcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHH
Q 013535          106 SSVGV------MPTEEHTSIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS  178 (441)
Q Consensus       106 ~~v~~------~~~~~~t~i~v~~~D-rpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~  178 (441)
                      ..+..      .....+..+++.++| ++|++.+|+.+|+++|+||.+.+..+......-.|++..+    + .+   .+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~----~-~~---~~  156 (415)
T 3p96_A           85 VSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP----P-GA---DE  156 (415)
T ss_dssp             EEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC----T-TC---HH
T ss_pred             EEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC----C-CC---HH
Confidence            11111      134578899999999 9999999999999999999998887743334444666442    1 12   35


Q ss_pred             HHHHHHHHhhc
Q 013535          179 TIKELLFNVLR  189 (441)
Q Consensus       179 ~l~~~L~~~L~  189 (441)
                      .++..|.+.+.
T Consensus       157 ~l~~~l~~l~~  167 (415)
T 3p96_A          157 ALRTALNRVSS  167 (415)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            56666665544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.76  E-value=1.3e-07  Score=96.33  Aligned_cols=122  Identities=12%  Similarity=0.045  Sum_probs=90.6

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh------
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE------  323 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~------  323 (441)
                      ...+|+|.|+||||+.+.+++.|+++|+||.+++.++.+|++.-...+.-+...     ...+.|++.|...-.      
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-----ADGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-----HTSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-----CCHHHHHHHHHHHHHHcCeEE
Confidence            356899999999999999999999999999999999988876655554321110     023567777754311      


Q ss_pred             --hh------c--CCceEEEEEeCC-ccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEE
Q 013535          324 --RR------A--SEGLELELCTED-RVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVT  376 (441)
Q Consensus       324 --~r------~--~~~~~ieV~~~D-rpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~  376 (441)
                        .+      .  ...+.+++.+.| +||++.+|+.+|+++|+||...+.-+......-.|++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence              00      1  126899999999 99999999999999999999988777433333336664

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.54  E-value=2.1e-06  Score=74.48  Aligned_cols=112  Identities=5%  Similarity=-0.000  Sum_probs=75.8

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceE
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLE  331 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~  331 (441)
                      ..++|..+|+||.++++++.|++.|+||..-.+....+...-.|.+.        +.   ++.++.|++. ........+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHc-CCeEeeeeE
Confidence            46889999999999999999999999999877654433222223321        11   2333334321 000111246


Q ss_pred             EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535          332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  375 (441)
Q Consensus       332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v  375 (441)
                      +-+..+|+||.+++++++|++.|+||.+......+.+..-.|..
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            77788899999999999999999999887755344555555544

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.44  E-value=5e-06  Score=72.12  Aligned_cols=110  Identities=18%  Similarity=0.180  Sum_probs=74.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcce
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~  106 (441)
                      .+|+|..+|+||.++++++.|++.|+||..-.+.. .+.. +-.|.+.+.       +...+.|+    ... +.    .
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~-~~~~~~~d~-------~~a~~~L~----~~G-~~----v   69 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFG-ILRGIVSDP-------DKAYKALK----DNH-FA----V   69 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCE-EEEEEESCH-------HHHHHHHH----HTT-CC----E
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCC-EEEEEeCCH-------HHHHHHHH----HcC-Ce----E
Confidence            58899999999999999999999999999877753 3311 222443111       22333333    221 10    0


Q ss_pred             eeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEE
Q 013535          107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH  161 (441)
Q Consensus       107 ~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~  161 (441)
                             ....++.+..+|+||.+++++++|+++|+||.....+..++...-+|.
T Consensus        70 -------~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~  117 (144)
T 2f06_A           70 -------NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR  117 (144)
T ss_dssp             -------EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred             -------eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence                   012467778899999999999999999999988776533444444443

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=98.14  E-value=0.0046  Score=65.91  Aligned_cols=266  Identities=12%  Similarity=0.116  Sum_probs=157.9

Q ss_pred             EEEEE-ccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCC-C-Cc
Q 013535           29 VIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA-P-SL  104 (441)
Q Consensus        29 ~v~V~-~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~-~-~~  104 (441)
                      .|++. .++.||..+++.+.|+++|+||.-...+. .+|..-..|.|...+-     ++..+.|++ +....... + ..
T Consensus       272 ~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~~~~~~~~  345 (600)
T 3l76_A          272 KVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALRSYPEADQ  345 (600)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGSSSTTCSS
T ss_pred             EEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhhccccccC
Confidence            34444 47899999999999999999995333322 4566666687744321     122222332 33222100 0 01


Q ss_pred             ceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHH
Q 013535          105 RSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIK  181 (441)
Q Consensus       105 ~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~  181 (441)
                      ..++..  ..+...|.|+|.   .+||+.+++..+|++.|+||....  |.  ...-.|.|..          +..++..
T Consensus       346 ~~~v~~--~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~----------~d~~~Av  409 (600)
T 3l76_A          346 EAEIIV--EKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQ----------RDADRAI  409 (600)
T ss_dssp             SSEEEE--ECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEG----------GGHHHHH
T ss_pred             cceeEe--cCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcH----------HHHHHHH
Confidence            112222  457889999985   799999999999999999997765  32  2234454443          1234555


Q ss_pred             HHHHHhhcCCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEE-EecC
Q 013535          182 ELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITM-RSKD  260 (441)
Q Consensus       182 ~~L~~~L~~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~t~I~V-~~~D  260 (441)
                      +.|++.+..... .     ..        .+       ....+.           ..-.-|..+   .+...|++ -.+|
T Consensus       410 ~aLh~~f~~~~t-~-----~~--------~~-------~~~~~~-----------~~v~Gia~~---~~~a~i~i~~~~~  454 (600)
T 3l76_A          410 AALSNAFGVTLS-P-----PK--------NQ-------TDTSHL-----------PAVRGVALD---QDQAQIAIRHVPD  454 (600)
T ss_dssp             HHHHHHTTCCBC-C-----CC--------CC-------CC---C-----------CSCCEEEEE---CSEEEEEEEEEES
T ss_pred             HHHHHhhcccCC-C-----cc--------cc-------cccccc-----------CceEEEEee---CCEEEEEEecCCC
Confidence            666665543210 0     00        00       000010           011233333   35566666 4699


Q ss_pred             CcchHHHHHHHHHhCCceEEEEEEEec----CC--eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhc--------
Q 013535          261 RPKLLFDIVCTLTDMQYVVFHGMVNTG----RT--EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA--------  326 (441)
Q Consensus       261 rpGLl~~i~~~L~~~glnI~~A~i~t~----~~--~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~--------  326 (441)
                      +||+.+++...|++.|+||.--.....    .|  ..--+|.|..         ..+++..+.|++. ....        
T Consensus       455 ~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---------~d~~~a~~~l~~~-~~~~~~~~v~~~  524 (600)
T 3l76_A          455 RPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---------GDSSQAEAILQPL-IKDWLDAAIVVN  524 (600)
T ss_dssp             STTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---------HHHHHHHHHHHHH-TTTSTTCEEEEE
T ss_pred             CccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---------HHHHHHHHHHHHH-HHhcCCceEEEe
Confidence            999999999999999999954333222    13  2333466643         3444445555442 2111        


Q ss_pred             CCceEEEEEe---CCccchHHHHHHHHHHCCceEEEEE
Q 013535          327 SEGLELELCT---EDRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       327 ~~~~~ieV~~---~DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      +.-..|.|.+   ..+||+.+++.++|++.||||....
T Consensus       525 ~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          525 KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             CCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             CCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            2245777876   5999999999999999999998766

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.09  E-value=2e-05  Score=62.48  Aligned_cols=67  Identities=13%  Similarity=0.201  Sum_probs=53.4

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (441)
                      ....|+|.++||||++++|+++|+++|+||.+....+..+.+...+.+.-+  +     ...+++|.+.|.+..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-----~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-----KQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-----CCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-----CCCHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999877777777766442  1     123577888877643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.07  E-value=2.7e-05  Score=61.71  Aligned_cols=50  Identities=20%  Similarity=0.200  Sum_probs=43.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC   76 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~   76 (441)
                      ...|+|.++||||++++++++|+++|+||.+....+.+|.+.-.+.+.-+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~   54 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   54 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence            46899999999999999999999999999999998866887777777443

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.88  E-value=5.5e-05  Score=59.25  Aligned_cols=64  Identities=11%  Similarity=0.214  Sum_probs=50.1

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      .+.|.|.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+.-.     +...++++.++|.+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999998876655555555322     24566777777765

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.83  E-value=0.00063  Score=65.88  Aligned_cols=117  Identities=10%  Similarity=0.054  Sum_probs=74.5

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  104 (441)
                      ...|++.|+||||+.+++++.|+++|+||.+.+.++  ..|+|+-...+.-+++ ..+.+++.+.+. .+.....    +
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~~~~L~~~f~-~la~~~~----m   79 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIPLASLRTGFG-VIAAKFT----M   79 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCCHHHHHHHHH-HHHHHTT----C
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCCHHHHHHHHH-HHHHHcC----C
Confidence            468999999999999999999999999999999985  5688776666643332 122233444443 2333222    1


Q ss_pred             ceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       105 ~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      ...+..  ......|-|....+-.-|.++-.....-.+++.-+-+.+
T Consensus        80 ~~~l~~--~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           80 GWHMRD--RETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             EEEEEE--TTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             EEEeec--cCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            222222  223344555555555677777777777777766555555

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.80  E-value=0.00011  Score=57.54  Aligned_cols=64  Identities=14%  Similarity=0.268  Sum_probs=49.1

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~  185 (441)
                      -.+.|.|.+.||||+|++|+.+|++.|+||.+..+.+.++.+...|.+.-.       +.+.++++.+.|.
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~   67 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHT
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            357789999999999999999999999999999998866555556655441       3455566666553

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.78  E-value=0.00036  Score=68.00  Aligned_cols=118  Identities=12%  Similarity=0.102  Sum_probs=69.0

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      ....|++.|+||||++++|++.|+++|+||++++.+++  .|+|+-...+..+.+ ..+.+++.+.+.. +.....    
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~~~~~L~~~l~~-la~~l~----   94 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PFDLDGFREAFTP-IAEEFS----   94 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SSCHHHHHHHHHH-HHHHHT----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CCCHHHHHHHHHH-HHHHhC----
Confidence            34689999999999999999999999999999999974  688776665543322 1222334344432 222221    


Q ss_pred             cceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          104 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       104 ~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      +...+..........|.+.+.  -.-|.++......-.++..-+-+.+
T Consensus        95 m~~~l~~~~~~~ri~vl~Sg~--g~nl~~ll~~~~~g~l~~~I~~Vis  140 (302)
T 3o1l_A           95 MDWRITDSAQKKRVVLMASRE--SHCLADLLHRWHSDELDCDIACVIS  140 (302)
T ss_dssp             CEEEEEETTSCCEEEEEECSC--CHHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred             CeeeecccCCCcEEEEEEeCC--chhHHHHHHHHHCCCCCcEEEEEEE
Confidence            112222222223333333333  3456666666655555544444444

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.76  E-value=0.00086  Score=64.88  Aligned_cols=116  Identities=7%  Similarity=-0.010  Sum_probs=67.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~  104 (441)
                      ...|+|.|+||||+++++++.|+++|+||.+.+.++  ..|+++-...+..+.+  .+.+++.+.+. .+.....    .
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~--~~~~~L~~~f~-~la~~l~----m   80 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDD--FDEAGFRAGLA-ERSEAFG----M   80 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSS--CCHHHHHHHHH-HHHGGGT----C
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCC--CCHHHHHHHHH-HHHHHcC----C
Confidence            468999999999999999999999999999999996  5687775555543321  22233444443 2333322    1


Q ss_pred             ceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       105 ~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                      ...+..........|.+.+  +-.-|.++......-.++..-+-+.+
T Consensus        81 ~~~l~~~~~~~ri~vl~Sg--~g~~l~~ll~~~~~g~l~~~i~~Vis  125 (286)
T 3n0v_A           81 AFELTAPNHRPKVVIMVSK--ADHCLNDLLYRQRIGQLGMDVVAVVS  125 (286)
T ss_dssp             EEEEECTTCCCEEEEEESS--CCHHHHHHHHHHHTTSSCCEEEEEEE
T ss_pred             EEEeecCCCCcEEEEEEeC--CCCCHHHHHHHHHCCCCCcEEEEEEe
Confidence            1222221112223333333  33456666665555555544444444

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.74  E-value=0.0011  Score=64.05  Aligned_cols=117  Identities=10%  Similarity=-0.009  Sum_probs=71.6

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      ....|++.|+||||+++++++.|+++|+||++++.++  ..|+|+-...+..+ +...  .++.+.+.. +.....    
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~~~--~~L~~~f~~-la~~~~----   77 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP-VAGV--NDFNSAFGK-VVEKYN----   77 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-C-----CHHHHHHHH-HHGGGT----
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC-CCCH--HHHHHHHHH-HHHHcC----
Confidence            4578999999999999999999999999999999985  56877755555332 2111  234344432 333221    


Q ss_pred             cceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee
Q 013535          104 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (441)
Q Consensus       104 ~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~  152 (441)
                      +...+..........|.+.+.  -.-|.++-.....-.+++.-+-+.+.
T Consensus        78 m~~~l~~~~~~~ri~vl~Sg~--g~nl~~ll~~~~~g~l~~~i~~Visn  124 (287)
T 3nrb_A           78 AEWWFRPRTDRKKVVIMVSKF--DHCLGDLLYRHRLGELDMEVVGIISN  124 (287)
T ss_dssp             CEEEEEETTCCCEEEEEECSC--CHHHHHHHHHHHHTSSCCEEEEEEES
T ss_pred             CeeEeeccCCCcEEEEEEeCC--CcCHHHHHHHHHCCCCCeEEEEEEeC
Confidence            222233222233344444443  45777777777766666555555553

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.69  E-value=0.0012  Score=64.00  Aligned_cols=119  Identities=8%  Similarity=0.042  Sum_probs=69.0

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcC-CCCCCCchHHHHHHHHHhcccCCCCC
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDC-DGKKIRDKEVIDYIQQRLETDASFAP  102 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~-~g~~~~~~~~~~~L~~~L~~~~~~~~  102 (441)
                      ....+++.|+||||++++|++.|+++|+||.+++.++  ..|+|+-...+..+ +....+.+++.+.+.. +.....   
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~-la~~~~---   84 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP-IAERFR---   84 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH-HHHHHT---
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH-HHHhcC---
Confidence            3468999999999999999999999999999999996  56877755554332 0111222333333332 222221   


Q ss_pred             CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535          103 SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (441)
Q Consensus       103 ~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T  151 (441)
                       ....+..........|.+.+.  -.-|.++-.....-.+++.-+-+.+
T Consensus        85 -m~~~l~~~~~~~ri~vl~Sg~--g~~l~~ll~~~~~g~l~~~i~~Vis  130 (292)
T 3lou_A           85 -MQWAIHDVAARPKVLIMVSKL--EHCLADLLFRWKMGELKMDIVGIVS  130 (292)
T ss_dssp             -CEEEEEETTSCCEEEEEECSC--CHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             -cEEEeeccCCCCEEEEEEcCC--CcCHHHHHHHHHcCCCCcEEEEEEe
Confidence             122222222223334444333  3466666666666656555455555

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.56  E-value=0.00052  Score=60.96  Aligned_cols=110  Identities=16%  Similarity=0.221  Sum_probs=76.4

Q ss_pred             CCeEEEEEE-ccCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535           25 ADATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYIS-SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (441)
Q Consensus        25 ~~~~~v~V~-~~DrpGLf~~i~~~L~~~glnI~~A~i~-t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~  102 (441)
                      .+...|+|. .+|+||..+++.+.|+++|+||.-.... +.+|..--.|.|...+.     ++..+.|++ +......  
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~--   94 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGA--   94 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTC--
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCC--
Confidence            356888888 5999999999999999999999866553 23465555688743211     223333333 2222211  


Q ss_pred             CcceeeeecCCCCeEEEEEEeCC---CcchHHHHHHHHHhcCCeEEEE
Q 013535          103 SLRSSVGVMPTEEHTSIEFTGTD---RPGLFSEVCAVLADLHCNVVNA  147 (441)
Q Consensus       103 ~~~~~v~~~~~~~~t~i~v~~~D---rpGLl~~i~~~L~~~g~~I~~A  147 (441)
                         ..+..  ..+...+.|.|.+   +||.++++..+|+++|+||..-
T Consensus        95 ---~~i~~--~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           95 ---ASIDG--DDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             ---SEEEE--ESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             ---ceEEe--cCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence               11222  3578899999987   9999999999999999999884

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.55  E-value=0.00084  Score=59.57  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=72.0

Q ss_pred             CCeEEEEEE-ecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH---h
Q 013535          249 KDYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI---E  323 (441)
Q Consensus       249 ~~~t~I~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L---~  323 (441)
                      .+.+.|+|. .+|+||.++++...|++.|+||..-..... +|...-+|.|...         ..++..+.|++..   .
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~---------~~~~a~~~l~~~~~~l~   93 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG---------DYKQTLEILSERQDSIG   93 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG---------GHHHHHHHHHHSSTTTT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech---------HHHHHHHHHHHHHHHcC
Confidence            356778888 599999999999999999999987554322 3444455776431         2233334444321   1


Q ss_pred             hh----cCCceEEEEEeCC---ccchHHHHHHHHHHCCceEEEE
Q 013535          324 RR----ASEGLELELCTED---RVGLLSDITRIFRENSLSIKRA  360 (441)
Q Consensus       324 ~r----~~~~~~ieV~~~D---rpGLL~~It~~l~~~~v~I~~A  360 (441)
                      ..    ......+.|.+.+   +||+++++.++|++.|+||...
T Consensus        94 ~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           94 AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence            10    1225689999887   9999999999999999999984

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.44  E-value=0.0043  Score=60.02  Aligned_cols=109  Identities=13%  Similarity=0.123  Sum_probs=70.9

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE-----  323 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~-----  323 (441)
                      ..+++|.|+||||+.+++++.|+++|+||.+++.++.  .|++.-...+.-+.+. .    ..+.|++.|...-.     
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-I----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-C----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-C----CHHHHHHHHHHHHHHcCCE
Confidence            4679999999999999999999999999999998754  4666544444332221 1    34667776654321     


Q ss_pred             ---hhcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535          324 ---RRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  364 (441)
Q Consensus       324 ---~r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T  364 (441)
                         +...+...|-|-.--+---|.+|-.....-.++++-+-+-+
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence               11122334444444444578888888877777655444433

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.40  E-value=0.0037  Score=60.85  Aligned_cols=108  Identities=10%  Similarity=0.079  Sum_probs=68.1

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hh-
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---IE-  323 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~---L~-  323 (441)
                      ...+++|.|+||||+.+++++.|+++|+||.+++.++.  .|++.-...+..+.+. .    ..+.|++.|...   +. 
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~-~----~~~~L~~~l~~la~~l~m   95 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLP-F----DLDGFREAFTPIAEEFSM   95 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSS-S----CHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCC-C----CHHHHHHHHHHHHHHhCC
Confidence            34679999999999999999999999999999999875  5666544444332221 1    345666666543   21 


Q ss_pred             ----hhcCC--ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535          324 ----RRASE--GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  364 (441)
Q Consensus       324 ----~r~~~--~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T  364 (441)
                          +...+  ...|=+++.  ---|.+|......-.++.+-+-+-+
T Consensus        96 ~~~l~~~~~~~ri~vl~Sg~--g~nl~~ll~~~~~g~l~~~I~~Vis  140 (302)
T 3o1l_A           96 DWRITDSAQKKRVVLMASRE--SHCLADLLHRWHSDELDCDIACVIS  140 (302)
T ss_dssp             EEEEEETTSCCEEEEEECSC--CHHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred             eeeecccCCCcEEEEEEeCC--chhHHHHHHHHHCCCCCcEEEEEEE
Confidence                11112  233334444  3467777777766655544333333

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.24  E-value=0.0028  Score=56.79  Aligned_cols=114  Identities=13%  Similarity=0.179  Sum_probs=76.2

Q ss_pred             CCeEEEEE-EecCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Q 013535          249 KDYTVITM-RSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  324 (441)
Q Consensus       249 ~~~t~I~V-~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~---~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~  324 (441)
                      .+.+.|+| ..+|+||.++++...|++.|+||..-...+.   ++..--.|.+..         ...++..+.|++....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~---------~d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR---------SDGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH---------HHHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc---------ccHHHHHHHHHHHHHh
Confidence            46677888 4699999999999999999999987655443   223322366643         2333444444432111


Q ss_pred             h-------cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535          325 R-------ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  375 (441)
Q Consensus       325 r-------~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v  375 (441)
                      .       ......|.|.+.   ++||+++++.++|++.||||....  |..  ..-.|.|
T Consensus        84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe--~~Is~vV  140 (178)
T 2dtj_A           84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLI  140 (178)
T ss_dssp             TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEE
T ss_pred             cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEE
Confidence            0       122457788876   899999999999999999999843  332  3335656

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.23  E-value=0.0066  Score=58.62  Aligned_cols=108  Identities=10%  Similarity=0.018  Sum_probs=67.1

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh----
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER----  324 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~----  324 (441)
                      ..+++|.|+||||+.+++++.|+++|+||.+++.++.  .|++.-...+..+.  .    ...+.|++.|...-.+    
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~----~~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--D----FDEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--S----CCHHHHHHHHHHHHGGGTCE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--C----CCHHHHHHHHHHHHHHcCCE
Confidence            4679999999999999999999999999999999864  46665444433222  1    1356777777653221    


Q ss_pred             ----hcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535          325 ----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  364 (441)
Q Consensus       325 ----r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T  364 (441)
                          ...++..|-|-+--+---|.+|......-.++.+-+-+-+
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis  125 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVS  125 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEE
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEe
Confidence                1122223333333333467777777766555544333333

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.20  E-value=0.0084  Score=58.06  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEcc-CCCCCCCHHHHHHHHHHHHHH---Hh-
Q 013535          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHV-DGLPISSEAERERVIQCLEAA---IE-  323 (441)
Q Consensus       251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~-~g~~i~~~~~~~~l~~~L~~~---L~-  323 (441)
                      ..+++|.|+||||+.+++++.|+++|+||.+++.++.  .|++.-...+... .+...    ..+.|++.|...   +. 
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~m   85 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFRM   85 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcCc
Confidence            4689999999999999999999999999999999863  4665533333221 01011    346677666543   21 


Q ss_pred             ----hhcCC--ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535          324 ----RRASE--GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  364 (441)
Q Consensus       324 ----~r~~~--~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T  364 (441)
                          +...+  ...|=+++.+  --|.+|......-.++++-+-+-+
T Consensus        86 ~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~g~l~~~i~~Vis  130 (292)
T 3lou_A           86 QWAIHDVAARPKVLIMVSKLE--HCLADLLFRWKMGELKMDIVGIVS  130 (292)
T ss_dssp             EEEEEETTSCCEEEEEECSCC--HHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             EEEeeccCCCCEEEEEEcCCC--cCHHHHHHHHHcCCCCcEEEEEEe
Confidence                11122  2334444443  467777777777666544444433

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.20  E-value=0.0011  Score=58.77  Aligned_cols=109  Identities=13%  Similarity=0.153  Sum_probs=75.5

Q ss_pred             CCeEEEEEEc-cCCCcHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCC
Q 013535           25 ADATVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASF  100 (441)
Q Consensus        25 ~~~~~v~V~~-~DrpGLf~~i~~~L~~~glnI~~A~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~  100 (441)
                      .+...|+|.+ +|+||..+++.++|++.|+||.-......   .|..--.|.|...+.     ++..+.|++ +.....+
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~-~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEP-VLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHH-HHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHH-HHHHhCC
Confidence            4567788875 89999999999999999999986544322   355555688854321     223333333 2222211


Q ss_pred             CCCcceeeeecCCCCeEEEEEEeCC---CcchHHHHHHHHHhcCCeEEEE
Q 013535          101 APSLRSSVGVMPTEEHTSIEFTGTD---RPGLFSEVCAVLADLHCNVVNA  147 (441)
Q Consensus       101 ~~~~~~~v~~~~~~~~t~i~v~~~D---rpGLl~~i~~~L~~~g~~I~~A  147 (441)
                            .+..  ..+...+.|+|.+   +||.++++..+|++.|+||...
T Consensus        88 ------~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           88 ------EAIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             ------EEEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             ------cEEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence                  1222  3578889999976   9999999999999999999544

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.05  E-value=0.015  Score=56.23  Aligned_cols=108  Identities=9%  Similarity=0.113  Sum_probs=67.3

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh---
Q 013535          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---  324 (441)
Q Consensus       250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~---  324 (441)
                      ...+++|.|+||||+.+++++.|+++|+||.+++.++.  .|++.-...+..+ +  .    ..+.|++.|...-.+   
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~--~----~~~~L~~~f~~la~~~~m   78 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP-V--A----GVNDFNSAFGKVVEKYNA   78 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-C---------CHHHHHHHHHHGGGTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC-C--C----CHHHHHHHHHHHHHHcCC
Confidence            35689999999999999999999999999999999753  4666543333221 1  1    233666666543211   


Q ss_pred             -----hcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535          325 -----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST  364 (441)
Q Consensus       325 -----r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T  364 (441)
                           ...+...|-|-.--+---|.+|......-.++++-+-+-+
T Consensus        79 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           79 EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             EEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             eeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence                 1122333333333334578888888877666554444433

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.05  E-value=0.0019  Score=57.24  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ...|.|...|+||+|++|+++|+++|+||.+..+.+..  +...-+|.+..        +...++++.+.|.+
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcC
Confidence            46789999999999999999999999999999987643  45556666643        25677888888876

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.03  E-value=0.0018  Score=58.08  Aligned_cols=110  Identities=18%  Similarity=0.331  Sum_probs=73.7

Q ss_pred             CCeEEEEE-EccCCCcHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCC
Q 013535           25 ADATVIKV-DSVNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASF  100 (441)
Q Consensus        25 ~~~~~v~V-~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~  100 (441)
                      .+...|+| ..+|+||..+++...|++.|+||.-....+.   +|..-..|.+...+.     ++..+.|++ +......
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~-----~~a~~~l~~-~~~~~~~   86 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW   86 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHH-----HHHHHHHHT-TTTTTTC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccH-----HHHHHHHHH-HHHhcCC
Confidence            35678888 4799999999999999999999986555432   333333477743211     122222222 2222211


Q ss_pred             CCCcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEE
Q 013535          101 APSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNA  147 (441)
Q Consensus       101 ~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A  147 (441)
                           ..+..  ..+...|.|.|.   ++||.++++..+|++.|+||..-
T Consensus        87 -----~~v~~--~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           87 -----TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             -----SEEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             -----CeEEE--eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence                 11222  357788888886   89999999999999999999884

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.98  E-value=0.0052  Score=54.31  Aligned_cols=115  Identities=10%  Similarity=0.109  Sum_probs=74.8

Q ss_pred             CCeEEEEEEe-cCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH---H
Q 013535          249 KDYTVITMRS-KDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA---A  321 (441)
Q Consensus       249 ~~~t~I~V~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~---~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~---~  321 (441)
                      .+.+.|+|.+ +|+||.++++..+|++.|+||..-.....   .|...-+|.|...         ..++..+.|.+   .
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~---------d~~~a~~~L~~~~~~   84 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD---------FAQEALEALEPVLAE   84 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG---------GHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH---------HHHHHHHHHHHHHHH
Confidence            3567777766 89999999999999999999986443222   2344455777542         11222233332   2


Q ss_pred             Hhhh---cCCceEEEEEeCC---ccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEE
Q 013535          322 IERR---ASEGLELELCTED---RVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVT  376 (441)
Q Consensus       322 L~~r---~~~~~~ieV~~~D---rpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~  376 (441)
                      +.-.   .+....+.|.+.+   +||+++++.++|++.||||....  |. +. .=+|.|.
T Consensus        85 ~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e~-~is~vv~  141 (167)
T 2dt9_A           85 IGGEAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-EV-RISVIIP  141 (167)
T ss_dssp             HCCEEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEE
T ss_pred             hCCcEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-CC-EEEEEEe
Confidence            2210   1224568888886   99999999999999999995543  33 32 4455553

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.93  E-value=0.0032  Score=55.79  Aligned_cols=63  Identities=11%  Similarity=0.137  Sum_probs=50.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ...|.|...|+||+|++|+++|+++|+||.+..+.+..  +...-+|.+..        ++..+++|.+.|.+
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~K   68 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999987543  55666666654        25677888888776

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.84  E-value=0.24  Score=52.56  Aligned_cols=196  Identities=15%  Similarity=0.159  Sum_probs=122.1

Q ss_pred             EEEEeeCCCCCeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHH
Q 013535           16 RVVIDNNTCADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (441)
Q Consensus        16 ~V~v~~~~~~~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~   92 (441)
                      .|.++    .+...|.|.+.   ++||+.+++..+|++.|+||.-..  +. .. -.+|.|...+.     ++..+.|.+
T Consensus       348 ~v~~~----~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~-~Is~vI~~~d~-----~~Av~aLh~  414 (600)
T 3l76_A          348 EIIVE----KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EV-KVSCVIDQRDA-----DRAIAALSN  414 (600)
T ss_dssp             EEEEE----CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGGGH-----HHHHHHHHH
T ss_pred             eeEec----CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CC-EEEEEEcHHHH-----HHHHHHHHH
Confidence            55553    45778899875   789999999999999999997554  32 22 22466644322     345677777


Q ss_pred             HhcccCCCCCC-----cceee-eecCCCCeEEEEEEe-CCCcchHHHHHHHHHhcCCeEEEEEEEee----CC--eEEEE
Q 013535           93 RLETDASFAPS-----LRSSV-GVMPTEEHTSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTH----ND--RAAAV  159 (441)
Q Consensus        93 ~L~~~~~~~~~-----~~~~v-~~~~~~~~t~i~v~~-~DrpGLl~~i~~~L~~~g~~I~~A~i~T~----~~--~~~dv  159 (441)
                      .+......+..     ....| ....+.+...|+|.. +|+||+.++|-..|+++|+||.--.....    .+  ...-.
T Consensus       415 ~f~~~~t~~~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~is  494 (600)
T 3l76_A          415 AFGVTLSPPKNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIA  494 (600)
T ss_dssp             HTTCCBCCCCCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEE
T ss_pred             hhcccCCCccccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEE
Confidence            77553211000     00111 123355777787765 89999999999999999999965444332    13  23445


Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHhhcCCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCC
Q 013535          160 VHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSR  239 (441)
Q Consensus       160 F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (441)
                      |.|..          +.+++..+.|.+ +..+..                                             .
T Consensus       495 ftv~~----------~d~~~a~~~l~~-~~~~~~---------------------------------------------~  518 (600)
T 3l76_A          495 FMVAE----------GDSSQAEAILQP-LIKDWL---------------------------------------------D  518 (600)
T ss_dssp             EEEEH----------HHHHHHHHHHHH-HTTTST---------------------------------------------T
T ss_pred             EEEeH----------HHHHHHHHHHHH-HHHhcC---------------------------------------------C
Confidence            66544          223334344433 222110                                             0


Q ss_pred             CEEEEEcCCCCeEEEEEEe---cCCcchHHHHHHHHHhCCceEEEEE
Q 013535          240 PQVTVLNIEKDYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGM  283 (441)
Q Consensus       240 ~~V~v~~~~~~~t~I~V~~---~DrpGLl~~i~~~L~~~glnI~~A~  283 (441)
                      -.|.++   ++...|.+.+   +..||.-+++..+|++.|+||..-.
T Consensus       519 ~~v~~~---~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          519 AAIVVN---KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             CEEEEE---CCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             ceEEEe---CCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            112221   2566778876   6899999999999999999997543

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.82  E-value=0.0036  Score=55.44  Aligned_cols=62  Identities=19%  Similarity=0.317  Sum_probs=48.6

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC--CeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g--~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +.|.|.+.||||+|++|+.+|++.|+||.++.+.+..  +...=+|.+. .     ++..+++|.++|.+
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-----d~~~leqI~kqL~K   67 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-----DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-----CHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-----cHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999997543  3344455553 2     14677888888776

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.56  E-value=0.0062  Score=53.93  Aligned_cols=62  Identities=18%  Similarity=0.323  Sum_probs=48.5

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC--CeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g--~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      +.+.|...||||+|++|+.+|++.|+||.++.+.+..  +...=+|.+...      +..+++|.++|.+
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d------~~~leql~kQL~K   68 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP------DEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC------HHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc------HHHHHHHHHHhcC
Confidence            5789999999999999999999999999999997443  334445555311      4677888888776

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.48  E-value=0.041  Score=49.33  Aligned_cols=110  Identities=15%  Similarity=0.241  Sum_probs=74.4

Q ss_pred             CeEEEEEE-ccCCCcHHHHHHHHHHhCCceEEEEEEE-ec--CCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCC
Q 013535           26 DATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYIS-SD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (441)
Q Consensus        26 ~~~~v~V~-~~DrpGLf~~i~~~L~~~glnI~~A~i~-t~--~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~  101 (441)
                      +...|+|. .+|+||..+++...|++.|+||.--... +.  .|..-..|.|...+.     +...+.|++ +.....  
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~-----~~a~~~L~~-~~~el~--   86 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLDS-LRNEIG--   86 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTH-----HHHHHHHHH-THHHHC--
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHH-----HHHHHHHHH-HHHhcC--
Confidence            45566654 7899999999999999999999755443 22  566666788854322     122222332 211111  


Q ss_pred             CCcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEE
Q 013535          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus       102 ~~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                         ...+..  ..+...|.++|.   ++||+.+++..+|++.|+||....
T Consensus        87 ---~~~v~~--~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           87 ---FSQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             ---CSEEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ---cceEEE--eCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence               011222  347788888875   899999999999999999998876

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.27  E-value=0.015  Score=52.51  Aligned_cols=64  Identities=14%  Similarity=0.290  Sum_probs=49.1

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      ...|+|...|+||.|++|+++|+.+|+||.+..+.. .+ +...-++.|...        +..+++|.+.|.+.
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCc
Confidence            578999999999999999999999999999988864 33 445556666541        23467777777653

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.20  E-value=0.014  Score=52.82  Aligned_cols=63  Identities=14%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE-eeC-CeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS-TIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~-T~g-~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      .+.|.|...|+||.|++|+.+|++.|+||.+..+. |.. +...=++.+...      +..+++|.++|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcC
Confidence            47899999999999999999999999999999986 443 223334444322      3567888888887

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.17  E-value=0.013  Score=51.40  Aligned_cols=35  Identities=29%  Similarity=0.536  Sum_probs=32.9

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI  365 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~  365 (441)
                      .|+|.+.||+|+|++|+++|+++++||..+.+.+.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~   36 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI   36 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence            47999999999999999999999999999999766

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.17  E-value=0.047  Score=48.94  Aligned_cols=103  Identities=11%  Similarity=0.076  Sum_probs=68.9

Q ss_pred             CeEEEEE-EecCCcchHHHHHHHHHhCCceEEEEEEE-ec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH---HH
Q 013535          250 DYTVITM-RSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA---AI  322 (441)
Q Consensus       250 ~~t~I~V-~~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~---~L  322 (441)
                      +.+.|+| ..+|+||.++++...|++.|+||.--... +.  .|..--+|.|...+         .++..+.|++   .+
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~---------~~~a~~~L~~~~~el   85 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV---------GPAAVEKLDSLRNEI   85 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT---------HHHHHHHHHHTHHHH
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH---------HHHHHHHHHHHHHhc
Confidence            4445555 46899999999999999999999654322 22  34555567775421         1222233332   22


Q ss_pred             hhh----cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEE
Q 013535          323 ERR----ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       323 ~~r----~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      .-.    ...-..|.|.+.   ++||+.+++.++|++.||||....
T Consensus        86 ~~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           86 GFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             CCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CcceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            100    123457777765   899999999999999999999877

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.90  E-value=0.021  Score=52.19  Aligned_cols=111  Identities=15%  Similarity=0.261  Sum_probs=73.1

Q ss_pred             CCeEEEEEE-ccCCCcHHHHHHHHHHhCCceEEEEEEEe---cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCC
Q 013535           25 ADATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS---DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASF  100 (441)
Q Consensus        25 ~~~~~v~V~-~~DrpGLf~~i~~~L~~~glnI~~A~i~t---~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~  100 (441)
                      .+...|+|. .+|+||..+++.+.|++.|+||-=-....   .++..-..|.+...+.     +...+.++ .+......
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~-----~~~~~~l~-~~~~~~~~  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLD-SLRNEIGF  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH-----HHHHHHHH-TTHHHHCC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH-----HHHHHHHH-HHHhhhce
Confidence            456778876 69999999999999999999997543322   3456666687744321     11222222 22221110


Q ss_pred             CCCcceeeeecCCCCeEEEEEEe---CCCcchHHHHHHHHHhcCCeEEEEE
Q 013535          101 APSLRSSVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus       101 ~~~~~~~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                           ..+..  ..+...|.|+|   +.+||+.+++-.+|++.|+||.--.
T Consensus       107 -----~~v~~--~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          107 -----SQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             -----SEEEE--ECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -----eeEEE--ecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence                 11222  34566777776   6899999999999999999998775

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.72  E-value=0.16  Score=51.61  Aligned_cols=109  Identities=18%  Similarity=0.307  Sum_probs=74.9

Q ss_pred             CeEEEEEE-ccCCCcHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCC
Q 013535           26 DATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (441)
Q Consensus        26 ~~~~v~V~-~~DrpGLf~~i~~~L~~~glnI~~A~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~  101 (441)
                      +.+.|+|. .+|+||..+++.+.|+++|+||.--.+.+.   .|..-..|.|...+.     ++..+.|++ +...... 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~~-  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW-  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTTC-
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcCC-
Confidence            34567777 699999999999999999999986655442   455555688854221     223334443 3222211 


Q ss_pred             CCcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEE
Q 013535          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNA  147 (441)
Q Consensus       102 ~~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A  147 (441)
                          ..+..  ..+...+.|+|.   ++||.++++..+|++.|+||..-
T Consensus       336 ----~~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          336 ----TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             ----SEEEE--ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             ----ceEEE--eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence                11222  357788899885   89999999999999999999843

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.46  E-value=0.054  Score=47.39  Aligned_cols=59  Identities=19%  Similarity=0.126  Sum_probs=45.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      .|.|.+.||+|+|++|+.+|+.+++||....+.+. +.    +++.-+     ..+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            47899999999999999999999999999999765 22    444442     1235667777777665

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.29  E-value=0.2  Score=50.78  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=70.2

Q ss_pred             CCeEEEEEE-ecCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---
Q 013535          249 KDYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---  321 (441)
Q Consensus       249 ~~~t~I~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~---~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~---  321 (441)
                      .+.+.|+|. .+|+||.++++...|++.|+||.--...+.   .|...-+|.|...      +   .++..+.|++.   
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~------~---~~~a~~~l~~~~~~  332 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS------D---GRRAMEILKKLQVQ  332 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT------T---HHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech------h---HHHHHHHHHHHHHH
Confidence            466788888 699999999999999999999986544343   2444555776531      1   12222333331   


Q ss_pred             Hhh-h---cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEE
Q 013535          322 IER-R---ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRA  360 (441)
Q Consensus       322 L~~-r---~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A  360 (441)
                      +.. .   ...-..+.|.+.   ++||+++++.++|.+.||||...
T Consensus       333 ~~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          333 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             TTCSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             cCCceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            210 0   112345777775   89999999999999999999944

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.98  E-value=0.13  Score=46.73  Aligned_cols=105  Identities=10%  Similarity=0.090  Sum_probs=68.4

Q ss_pred             CCCeEEEEEE-ecCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHH---H
Q 013535          248 EKDYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTEAYQEFYIRHVDGLPISSEAERERVIQCLE---A  320 (441)
Q Consensus       248 ~~~~t~I~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~---~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~---~  320 (441)
                      +.+...|++. .+|+||+.+++...|++.|+||.--.....   ++....+|.+...         ..+...+.|.   .
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~---------d~~~~~~~l~~~~~  102 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD---------VGPAAVEKLDSLRN  102 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG---------GHHHHHHHHHTTHH
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh---------hHHHHHHHHHHHHh
Confidence            3456677775 699999999999999999999975432221   2345555776531         2222222232   2


Q ss_pred             HHhhh----cCCceEEEEE---eCCccchHHHHHHHHHHCCceEEEEE
Q 013535          321 AIERR----ASEGLELELC---TEDRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       321 ~L~~r----~~~~~~ieV~---~~DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      .+...    .+.-..|.|.   ...+||+.+++-++|++.||||.-..
T Consensus       103 ~~~~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          103 EIGFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             HHCCSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             hhceeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            22111    1123445555   45899999999999999999998875

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.96  E-value=0.03  Score=51.45  Aligned_cols=61  Identities=11%  Similarity=0.225  Sum_probs=42.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-----CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-----~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ...|.+.+.||||+|++|+.+|+++++||...+..+..     +.+.-.+.+.+         . .++++-+.|++
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d---------~-~Le~LL~kLrk   69 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG---------G-DFEKILERVKT   69 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS---------S-CHHHHHHHHHT
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC---------C-CHHHHHHHHhC
Confidence            46789999999999999999999999999999998853     35555555443         1 24566666543

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.91  E-value=0.051  Score=49.88  Aligned_cols=47  Identities=17%  Similarity=0.137  Sum_probs=36.0

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEE
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-----GGWFMDVFNV   73 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~-----~g~~~d~f~V   73 (441)
                      ...|.|.+.||||++++++.+|++++.||...+..+.     +|.+.-.+.+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV   55 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   55 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEE
Confidence            3578999999999999999999999999999999874     5666655444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=91.73  E-value=0.43  Score=49.84  Aligned_cols=63  Identities=21%  Similarity=0.306  Sum_probs=49.4

Q ss_pred             CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHHHHHH
Q 013535          327 SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR  393 (441)
Q Consensus       327 ~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~~l~~  393 (441)
                      ++.+.+-+.-.|+||.+..|+..|.++||||...++...  |+.+.=.+.+    ..+++++.+++|++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA  516 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence            446889999999999999999999999999999999865  4445544544    34556677777765

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.44  E-value=0.31  Score=49.21  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=40.7

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  375 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v  375 (441)
                      ..|-+.-.|+||.+..|+.+|.++|+||......+.|+.+.-++-+
T Consensus       332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            4677888899999999999999999999999999988777666666

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=91.40  E-value=0.92  Score=44.05  Aligned_cols=92  Identities=16%  Similarity=0.202  Sum_probs=62.2

Q ss_pred             hCC-ceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEeC-CccchHHHHHHHH
Q 013535          274 DMQ-YVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE-DRVGLLSDITRIF  350 (441)
Q Consensus       274 ~~g-lnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~~-DrpGLL~~It~~l  350 (441)
                      ..| |+|..-.|.... ++..  |+|..........                 .....+.|-+..+ |+||-|+++...|
T Consensus       163 ~Yg~L~il~~~I~D~~~N~TR--Flvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~F  223 (313)
T 3mwb_A          163 EQPGLNVLAEDIGDNPDAVTR--FILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQF  223 (313)
T ss_dssp             HCTTCEEEESCCCSCTTCEEE--EEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHHH
T ss_pred             HcCChhhhhhcccCCCcceeE--EEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence            467 899988887664 3333  7766543321110                 0112466667775 9999999999999


Q ss_pred             HHCCceEEEEEEEeeC-CeeEEEEEEEcCCCCCCCh
Q 013535          351 RENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDP  385 (441)
Q Consensus       351 ~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~~~~~  385 (441)
                      +.+|||+.+.+..-.. ...+=.||| |..|..-++
T Consensus       224 a~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~  258 (313)
T 3mwb_A          224 ASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATDS  258 (313)
T ss_dssp             HTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTSH
T ss_pred             HHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCcH
Confidence            9999999999977544 345668888 556766443

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=90.80  E-value=0.5  Score=45.28  Aligned_cols=55  Identities=16%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEcCCCCCCC
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVD  384 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d~~g~~~~  384 (441)
                      .+.|-+..+|+||-|+++...|+.+|||+.+.+..-... ...=.||| |-+|..-+
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d  255 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHRED  255 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTS
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCc
Confidence            345555567999999999999999999999999875544 46678888 55677644

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.38  E-value=0.71  Score=46.50  Aligned_cols=48  Identities=13%  Similarity=0.222  Sum_probs=42.5

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV   73 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V   73 (441)
                      +...|.+.-.|+||.+.+|+.+|+++|+||......+.++.++-++.+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            456788999999999999999999999999999998888888866665

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=89.94  E-value=1.6  Score=42.72  Aligned_cols=48  Identities=21%  Similarity=0.427  Sum_probs=38.8

Q ss_pred             CccchHHHHHHHHHHCCceEEEEEEEeeCCe-eEEEEEEEcCCCCCCChH
Q 013535          338 DRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVDPK  386 (441)
Q Consensus       338 DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~-~~d~F~v~d~~g~~~~~~  386 (441)
                      |+||-|+++-..|+.+|||+.+.+..-.... .+=.||| |.+|..-++.
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~  265 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEER  265 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSHH
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCHH
Confidence            7999999999999999999999998766555 5557887 5567765543

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=88.11  E-value=1.4  Score=44.85  Aligned_cols=106  Identities=15%  Similarity=0.267  Sum_probs=67.7

Q ss_pred             eEEEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535           27 ATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (441)
Q Consensus        27 ~~~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~  103 (441)
                      ...|+|.+   ++.||..+++..+|+++|+||.-..  +...  -..|.|...+-.+ ...++.++|.+.+..       
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~~~~--~is~~V~~~d~~~-~~~~~~~el~~~~~~-------  365 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--SGVD--SVSLVIEDCKLDG-KCDKIIEEIKKQCNP-------  365 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--EETT--EEEEEEEHHHHTT-THHHHHHHHHHHSCC-------
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--cCCC--EEEEEEecchHHH-HHHHHHHHHHHhcCC-------
Confidence            34567774   6899999999999999999997432  2111  2346664432110 001223333332211       


Q ss_pred             cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEE
Q 013535          104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus       104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                        ..+..  ..+...|.|+|.   ++||+.+++..+|++.|+||....
T Consensus       366 --~~v~v--~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          366 --DSIEI--HPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             --SEEEE--EEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             --CcEEE--eCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence              11222  246788899875   589999999999999999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=87.46  E-value=2  Score=44.71  Aligned_cols=62  Identities=16%  Similarity=0.194  Sum_probs=47.4

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHH
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~   92 (441)
                      .+..+.+.-+|+||.+.+++..|.++|+||...++..  .+|.++-.+.+.++    + +++..+.|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~----~-~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD----V-PDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC----C-CHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC----C-CHHHHHHHhc
Confidence            4567888899999999999999999999999999985  46777766666222    2 2446666664

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=86.93  E-value=1.6  Score=41.45  Aligned_cols=80  Identities=13%  Similarity=0.180  Sum_probs=55.2

Q ss_pred             CCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEe---CCccchHHHHHHHH
Q 013535          275 MQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCT---EDRVGLLSDITRIF  350 (441)
Q Consensus       275 ~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~---~DrpGLL~~It~~l  350 (441)
                      .||+|..-.|....+ +..  |+|..... +.                   . ...+.|-+..   .|+||-|+++...|
T Consensus       154 ygL~il~~~I~D~~~N~TR--F~vl~~~~-~~-------------------~-~~ktsl~f~~~~~~~~pGaL~~~L~~F  210 (267)
T 2qmw_A          154 YGFTPIDTHIEDYPHNVTR--FLVIKNQQ-QF-------------------D-QNATSLMFLITPMHDKPGLLASVLNTF  210 (267)
T ss_dssp             GTCCEEEECCCSCSCCEEE--EEEEESCC-CC-------------------C-SSCSEEEEEEEESSCCTTHHHHHHHHH
T ss_pred             CCCcEeeccccCCCCCceE--EEEEecCC-CC-------------------C-CCeEEEEEEcCCCCCCcChHHHHHHHH
Confidence            477777777766533 332  66554322 10                   0 1245566666   89999999999999


Q ss_pred             HHCCceEEEEEEEeeC-CeeEEEEEEEc
Q 013535          351 RENSLSIKRAEISTIG-GKVKDTFYVTD  377 (441)
Q Consensus       351 ~~~~v~I~~A~i~T~g-~~~~d~F~v~d  377 (441)
                      +.+|||+.+.+..-.. ....=.|||.-
T Consensus       211 a~~gINLtkIESRP~~~~~~~Y~FfiD~  238 (267)
T 2qmw_A          211 ALFNINLSWIESRPLKTQLGMYRFFVQA  238 (267)
T ss_dssp             HTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             HHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence            9999999999987554 44667899843

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=86.51  E-value=2.9  Score=42.56  Aligned_cols=114  Identities=12%  Similarity=0.149  Sum_probs=72.2

Q ss_pred             CeEEEEEEe---cCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh-
Q 013535          250 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR-  325 (441)
Q Consensus       250 ~~t~I~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r-  325 (441)
                      +.+.|+|.+   ++.||.++++...|++.|++|...  .+...  --+|.|...+-..     ..+.+.+.|...+... 
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~~-----~~~~~~~el~~~~~~~~  367 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLDG-----KCDKIIEEIKKQCNPDS  367 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHTT-----THHHHHHHHHHHSCCSE
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHHH-----HHHHHHHHHHHhcCCCc
Confidence            566788885   699999999999999999999743  22121  2336665421110     1233333333322100 


Q ss_pred             ---cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEEEEeeCCe-eEEEEEE
Q 013535          326 ---ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYV  375 (441)
Q Consensus       326 ---~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~-~~d~F~v  375 (441)
                         ...-..|.|.+.   .+||+.+++.++|++.||||....   +|.. ..=+|.|
T Consensus       368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs---qgtSei~Is~vV  421 (446)
T 3tvi_A          368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID---QGSSEINVIVGV  421 (446)
T ss_dssp             EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE---ECSCTTEEEEEE
T ss_pred             EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE---ecCCCceEEEEE
Confidence               012457888876   589999999999999999998765   4433 2234555

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=84.77  E-value=5.3  Score=40.27  Aligned_cols=50  Identities=18%  Similarity=0.305  Sum_probs=42.1

Q ss_pred             CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEE
Q 013535          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (441)
Q Consensus       113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V  162 (441)
                      ..+...|.+.-.|.||.|..|+.+|+++|+||..-...|.++.+--+.-|
T Consensus       340 ~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          340 RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            34678999999999999999999999999999999999987665433333

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=81.94  E-value=1.2  Score=45.47  Aligned_cols=33  Identities=42%  Similarity=0.558  Sum_probs=29.8

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEE
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAE  361 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~  361 (441)
                      .|.+-+...|+||.|++|+.+|.++||+|.+..
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~  391 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMV  391 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence            478999999999999999999999999999875

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=81.83  E-value=4.2  Score=42.11  Aligned_cols=137  Identities=14%  Similarity=0.152  Sum_probs=82.0

Q ss_pred             eEEEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCC-chHHHHHHHHHhcccCCCCC
Q 013535           27 ATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIR-DKEVIDYIQQRLETDASFAP  102 (441)
Q Consensus        27 ~~~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~-~~~~~~~L~~~L~~~~~~~~  102 (441)
                      .+.|+|.+   .+++|..+++..+|+++|+||.-.. ++..   -.+|.|...+..... ..+.++.+.+.|....    
T Consensus       341 ~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~-sse~---sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~----  412 (510)
T 2cdq_A          341 VTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA-TSEV---SISLTLDPSKLWSRELIQQELDHVVEELEKIA----  412 (510)
T ss_dssp             EEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE-EETT---EEEEEECCGGGSSSCCCHHHHHHHHHHHTTTS----
T ss_pred             eEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE-eCCC---eEEEEEechHhhhhhHHHHHHHHHHHHhCCCC----
Confidence            35667774   7899999999999999999998552 2222   223566332211100 1223344443343211    


Q ss_pred             CcceeeeecCCCCeEEEEEEeC--CCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHH
Q 013535          103 SLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI  180 (441)
Q Consensus       103 ~~~~~v~~~~~~~~t~i~v~~~--DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l  180 (441)
                          .+..  ..+...|.|+|.  ..||+.+++..+|++.|+||....--  .....-.|.|..          +..++.
T Consensus       413 ----~v~~--~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqG--sSei~Is~vV~~----------~d~~~A  474 (510)
T 2cdq_A          413 ----VVNL--LKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQG--ASKVNISFIVNE----------AEAEGC  474 (510)
T ss_dssp             ----EEEE--EEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEEC--TTCSEEEEEEEH----------HHHHHH
T ss_pred             ----eEEE--eCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEec--CCcceEEEEEeH----------HHHHHH
Confidence                1222  346778888887  77899999999999999999765311  122333454533          234555


Q ss_pred             HHHHHHhhc
Q 013535          181 KELLFNVLR  189 (441)
Q Consensus       181 ~~~L~~~L~  189 (441)
                      -+.|++.+-
T Consensus       475 v~aLH~~f~  483 (510)
T 2cdq_A          475 VQALHKSFF  483 (510)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            566666654

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=80.10  E-value=13  Score=36.19  Aligned_cols=49  Identities=18%  Similarity=0.110  Sum_probs=37.6

Q ss_pred             eEEEEEEeC--CCcchHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEEe
Q 013535          116 HTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTD  164 (441)
Q Consensus       116 ~t~i~v~~~--DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~-~~dvF~V~~  164 (441)
                      .+.+.+..+  |+||-|+++-..|+.+|+|+..-......+. ..=.|||.-
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  257 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL  257 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE
Confidence            344444444  7999999999999999999998888776554 566788755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	441
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	2e-05
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	1e-04

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           +H  I   GTDRPG+ +EV  ++    CN++++ I         ++ ++
Sbjct: 4   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 52

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           I   G D+ G+ + V   +A+L  N+ +      ++    +  V+
Sbjct: 5   ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.67
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.66
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.55
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.43
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.32
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.04
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.75
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.72
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.59
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.54
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.43
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.38
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.36
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.24
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.23
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.16
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.0
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.93
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	96.91
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.89
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.88
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.52
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.19
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.71
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	89.92
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	88.48
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	85.69
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	81.09
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	80.99

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.67  E-value=6.3e-08  Score=75.15  Aligned_cols=51  Identities=18%  Similarity=0.212  Sum_probs=46.0

Q ss_pred             CCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013535           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID   75 (441)
Q Consensus        25 ~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~   75 (441)
                      ..++.|+++|+||||++++++++|+++||||.++++.+.+|.+.-.+.|.-
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~   53 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG   53 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc
Confidence            457899999999999999999999999999999999998888887777754

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.66  E-value=1e-07  Score=73.93  Aligned_cols=66  Identities=23%  Similarity=0.479  Sum_probs=57.2

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      .++++|++.|+||||++++++++|+++|+||.+++..+.++.....+.|.-+        +...+++++.|.+.
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~l   68 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLL   68 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHHH
Confidence            5688999999999999999999999999999999999999998888888762        34567888887663

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.55  E-value=2.2e-07  Score=71.37  Aligned_cols=50  Identities=20%  Similarity=0.221  Sum_probs=44.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCD   77 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~   77 (441)
                      ..|++.|+||||++++++++|+++|+||.+.+.++.++.+.-.+.+..+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~   52 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE   52 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEec
Confidence            57899999999999999999999999999999999888887777775543

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.43  E-value=7.3e-07  Score=68.37  Aligned_cols=63  Identities=10%  Similarity=0.028  Sum_probs=49.9

Q ss_pred             EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (441)
Q Consensus       252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~  320 (441)
                      .+|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+.+.      ..++|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~------~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ------DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC------CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC------CHHHHHHHHHH
Confidence            5799999999999999999999999999999999988877766666544332      23456665543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.32  E-value=4.6e-07  Score=71.15  Aligned_cols=67  Identities=13%  Similarity=0.268  Sum_probs=46.2

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe----eEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK----VKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~----~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      ..|+|.++|||||+++||++|+++|+||..++..|+.+.    ..+.|++.-....|-+ ...++|+++|..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~-~~~~~l~~~l~~   77 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSG-CNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTT-SCHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCcc-ccHHHHHHHHHH
Confidence            457788999999999999999999999999999887543    4557877543232321 224455555543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.04  E-value=7.1e-06  Score=64.09  Aligned_cols=39  Identities=13%  Similarity=0.133  Sum_probs=35.0

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~  153 (441)
                      ....|.|.|+|||||++.||++|+++|+||.+.+-.|..
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            456788899999999999999999999999999987754

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.75  E-value=4.2e-05  Score=56.50  Aligned_cols=47  Identities=6%  Similarity=0.043  Sum_probs=43.0

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEc
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD  377 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d  377 (441)
                      +|.|..+||||-|++++++|.+.||||+++.+...++.+.-.|.+.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57899999999999999999999999999999998999988887743

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=0.00012  Score=54.84  Aligned_cols=61  Identities=21%  Similarity=0.300  Sum_probs=46.8

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHHHHHH
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR  393 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~~l~~  393 (441)
                      ++.+-+.-.|+||+|.+|+.+|.++|+||.+.++.+.  |+.+.-++-+    ..+++++.+++|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v----D~~~~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc----CCCccHHHHHHHHc
Confidence            5678899999999999999999999999999999875  4444444433    33556666666654

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.59  E-value=0.00011  Score=54.05  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=41.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013535           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID   75 (441)
Q Consensus        29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~   75 (441)
                      +|.|..+|+||-+++++++|++.|+||.....+...++.+-.|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47788999999999999999999999999999987788887888844

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.54  E-value=0.00016  Score=53.00  Aligned_cols=46  Identities=22%  Similarity=0.172  Sum_probs=39.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 013535           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (441)
Q Consensus        29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~   74 (441)
                      ++.|+.+||||.+++++++|++.|+||.+-.+....++.+-.+.|.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            7899999999999999999999999999988876555556566663

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.43  E-value=0.00023  Score=52.16  Aligned_cols=45  Identities=16%  Similarity=0.220  Sum_probs=39.4

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV  375 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v  375 (441)
                      .+.|...||||.|++|+.+|++.|+||.+..+....+.+.-.|-+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            478999999999999999999999999999998777776666644

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00056  Score=51.11  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=46.4

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHH
Q 013535           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (441)
Q Consensus        27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~   92 (441)
                      +..+.+.-.|+||.+++++++|+++|+||....+.+  .+|.++-++.+ |  + ++ +++..+.|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v-D--~-~~-~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL-D--Q-DV-PDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE-S--S-CC-CHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc-C--C-Cc-cHHHHHHHHc
Confidence            467888889999999999999999999999999876  56777755555 2  2 12 2456666664

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.36  E-value=0.00013  Score=54.64  Aligned_cols=48  Identities=29%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCe--eEEEEEEEcC
Q 013535          331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGK--VKDTFYVTDV  378 (441)
Q Consensus       331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~--~~d~F~v~d~  378 (441)
                      -|.|.+.||||+|++|+.+|+++++||.+....+. .+.  ..-.|++.+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            47899999999999999999999999999997764 223  4556667554

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.24  E-value=0.00078  Score=50.06  Aligned_cols=64  Identities=11%  Similarity=0.162  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-C-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-N-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (441)
                      ..|.+...|+||+|++|+++|+..|+||.+..+... . +-..-++.+..        +++.++++.+.|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence            468899999999999999999999999999999853 2 33444444443        2567788888887643

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.00092  Score=49.80  Aligned_cols=63  Identities=16%  Similarity=0.313  Sum_probs=47.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCe--EEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (441)
Q Consensus       116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~--~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (441)
                      ...|.+...|+||+|++|+++|+..|+||.+..+......  ...++.+..        +++..+++.+.|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g--------~~~~i~qi~kQl~K   67 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG--------DDKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE--------CTTHHHHHHHHHTT
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc--------CHHHHHHHHHHHhC
Confidence            4678999999999999999999999999999998864333  333444433        13456777777654

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00071  Score=50.16  Aligned_cols=65  Identities=17%  Similarity=0.264  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (441)
Q Consensus       117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (441)
                      ..+.+...|+||+|++|+++|+..|+||.+..+........--+.+.-.  |    +++.++++.+.|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~--~----~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--G----DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--S----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE--C----CHHHHHHHHHHHhCC
Confidence            4688899999999999999999999999999988543332323333331  2    356778888887763

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.0012  Score=49.20  Aligned_cols=65  Identities=12%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      .+.+.+...|+||+|.+|+..|+..|+||.+..+........-.+-++- .|.   +..++++...|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv-~g~---~~~i~qi~kQl~K   67 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV-KGD---DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE-EEC---TTHHHHHHHHHTT
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE-EcC---HHHHHHHHHHHhC
Confidence            3678999999999999999999999999999999865444333333321 122   3456778788777

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0036  Score=47.12  Aligned_cols=42  Identities=14%  Similarity=0.278  Sum_probs=36.6

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeE
Q 013535          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA  156 (441)
Q Consensus       115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~  156 (441)
                      ....+.+.-.|+||.+++|+.+|+++|+||.+....+.++..
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~   51 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMG   51 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCc
Confidence            456888889999999999999999999999999888866443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.91  E-value=0.0002  Score=53.48  Aligned_cols=49  Identities=14%  Similarity=0.048  Sum_probs=34.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEE--EEEEEEEcC
Q 013535           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWF--MDVFNVIDC   76 (441)
Q Consensus        28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~--~d~f~V~~~   76 (441)
                      ..|.|.+.||||++++|+.+++++|.||......+ .+|.+  .-++.+.+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            35889999999999999999999999999999886 44432  223555443

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.89  E-value=0.0012  Score=49.10  Aligned_cols=64  Identities=17%  Similarity=0.354  Sum_probs=46.3

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      ..+.+...|+||+|++|+..|+..|+||.+..+.-......-.+-+.- .|   +++.++++...|.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv-~~---~~~~i~qi~kQL~K   66 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVT-NG---PDEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEE-EE---CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEE-EC---CHHHHHHHHHHHhC
Confidence            468889999999999999999999999999999843333222222221 12   24667778887776

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0017  Score=47.96  Aligned_cols=64  Identities=20%  Similarity=0.393  Sum_probs=47.6

Q ss_pred             eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535          330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH  397 (441)
Q Consensus       330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~  397 (441)
                      ..+.+...|+||+|++|+..|+..|+||.+..+.-......-.|-+.-. |   +++.++++...|.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~-~---~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G---DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S---CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhC
Confidence            4678889999999999999999999999999998443333333434321 2   34667788887776

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.013  Score=43.81  Aligned_cols=43  Identities=14%  Similarity=0.348  Sum_probs=36.2

Q ss_pred             CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecC--CEEE
Q 013535           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG--GWFM   68 (441)
Q Consensus        26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~--g~~~   68 (441)
                      +...+++.-.|+||.+++|+++|+++|+||.+....+.+  |+++
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~   54 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVV   54 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEE
Confidence            346788888999999999999999999999998877754  4544

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.19  E-value=0.034  Score=41.12  Aligned_cols=48  Identities=17%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             EEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEcCCCCC
Q 013535          334 LCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNP  382 (441)
Q Consensus       334 V~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d~~g~~  382 (441)
                      +...|+||-|+++...|+++|||+.+.+..-..+ .-.=.|||.- +|..
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~-~g~~   55 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA-DSAI   55 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE-SCCS
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ecCC
Confidence            4456999999999999999999999998775444 4556899954 4653

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.71  E-value=0.037  Score=42.53  Aligned_cols=52  Identities=21%  Similarity=0.378  Sum_probs=42.2

Q ss_pred             ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEcCCCC
Q 013535          329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGN  381 (441)
Q Consensus       329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d~~g~  381 (441)
                      .+.|-+...|+||-|+++...|+++|||+.+....-... ...=.||| |.+|.
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~   68 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKR   68 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGG
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccC
Confidence            477778889999999999999999999999998775544 34557988 55565

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.92  E-value=0.89  Score=33.00  Aligned_cols=44  Identities=20%  Similarity=0.183  Sum_probs=35.9

Q ss_pred             EEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535          121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (441)
Q Consensus       121 v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~  164 (441)
                      +...|+||-|+++-..|+++|+|+..-...... ....=.|+|.-
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~   51 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA   51 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            334699999999999999999999988877644 34667788876

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.48  E-value=0.41  Score=36.35  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=42.4

Q ss_pred             CCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535          112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD  164 (441)
Q Consensus       112 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~  164 (441)
                      ...+.|.|.+..+|+||.|+++-..|+.+|+|+..-..... +..+.=.|||.-
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            34567888888899999999999999999999988777654 344566788854

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=85.69  E-value=1.1  Score=31.40  Aligned_cols=59  Identities=17%  Similarity=0.154  Sum_probs=39.7

Q ss_pred             EEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHh
Q 013535           29 VIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL   94 (441)
Q Consensus        29 ~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L   94 (441)
                      .|++.+   .++||+.+++..+|++.|+||.-....+.. . -..|.|.+.+.     ++..+.|.+++
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se-~-~Is~~V~~~d~-----~~Av~~Lh~~F   64 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSE-V-NISFVIDEKDL-----LNCVRKLHEKF   64 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCS-S-EEEEEEEGGGH-----HHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCcc-c-eEEEEEeHHHH-----HHHHHHHHHHH
Confidence            466765   689999999999999999999844433322 2 23477755432     34556666655

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.09  E-value=0.72  Score=34.38  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             CCeEEEEEEe---CCCcchHHHHHHHHHhcCCeEEEEE
Q 013535          114 EEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE  148 (441)
Q Consensus       114 ~~~t~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~  148 (441)
                      .+.+.|+|.+   .++||+++++..+|+++|+||.--.
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            4678899987   4999999999999999999998875

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=80.99  E-value=1.7  Score=32.77  Aligned_cols=65  Identities=11%  Similarity=0.111  Sum_probs=44.8

Q ss_pred             CeEEEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhccc
Q 013535           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (441)
Q Consensus        26 ~~~~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~   97 (441)
                      +...|++.+   +++||+.+++..+|++.|+||.--...+.. . -..|.|...+.     ++..+.|.+.+...
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se-~-~Isf~V~~~d~-----~~a~~~L~~~f~~~   81 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE-T-NISLVVSEEDV-----DKALKALKREFGDF   81 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT-C-CEEEEECSTTH-----HHHHHHHHHHHCCC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc-c-eEEEEEeHHHH-----HHHHHHHHHHHHhh
Confidence            456888876   799999999999999999999854443322 1 23477743322     44667777777543