Citrus Sinensis ID: 013545

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD
Secondary Structure (PSIPRED)
ccEEEEEccccEEEEEcccccccEEEEEcccccccEEccccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEcccccccEEEEEEEEcccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEEEccccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEccccEEEEEcccccccEEEEcccccccEEEEEccccEEEcccccccccEEEEEEcccccEEEEEEccccEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEccccccccccccEEEEEcccccEEEEEcccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEcccccccccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEEccccEEEEEEccccccHcEEEEcccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEcccccccccEEEEEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEEcccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEccccccccccEEEEccccccccc
Coil and Loop (DISEMBL)
mwkeiggreagqirpnsfanrvkshrlstlqlsnykeivsphkgsinsLQVDLTEERyllsgasdssvavydvqratdyeggghiakhrSVFVVdkqhehghkyaissaiwypvdtglfvtgsydHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIasgaisqtlsghrdgimtvewsTSSEWILVtggcdgairfWDIRRAGCFRVLDqsqsqlgrrppllkrkslsagqnssvkprapqkrsangngvrqssvgripakgsvrqrlhpgmlssqdRATAHYGAVTGLKVTEDGMYLlsagsdsrirlwdvesgrntlVNFETVrlqtskpiqlattqdpavvfVPCMTAVKAfdiwsgktcltfrghyeyvncccfssqdqelytggndrqilvwcpsrhisdgvdagpmqdqdnwsd
Flexible Loop (DISEMBL)
mwkeiggreagqirpnsfanRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLsgasdssvavYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGaisqtlsghrDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLdqsqsqlgrrppllkrkslsagqnssvkprapqkrsangngvrqssvgripakgsvrqrlhpgmlssqdrATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFetvrlqtskpiqlattqdpaVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRhisdgvdagpmqdqdnwsd
Low Complexity Region (SEG)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD
Disordered region (IsUnstruct)
**********************************YKEIV******INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL************************************************************************AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI*****************
Disordered Region (DISOPRED)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQ*****
Disordered Region (DISEMBL)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK***************************SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD
Disordered Region (DISPRO)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQD******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
Q5BIM8	397	DNA excision repair prote	yes	no	0.818	0.909	0.334	2e-63
Q8CFD5	397	DNA excision repair prote	yes	no	0.857	0.952	0.334	2e-63
Q13216	396	DNA excision repair prote	yes	no	0.823	0.916	0.309	3e-60
Q9USR0	404	DNA excision repair prote	yes	no	0.795	0.868	0.290	1e-44
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.619	0.178	0.266	3e-18
O74855	502	Ribosome assembly protein	no	no	0.784	0.689	0.238	8e-16
P25382	515	Ribosome assembly protein	yes	no	0.748	0.640	0.238	1e-14
Q00808	1356	Vegetative incompatibilit	no	no	0.723	0.235	0.238	4e-13
B4JPT9	419	Ribosome biogenesis prote	N/A	no	0.426	0.448	0.275	4e-13
A7TNS8	669	CCR4-associated factor 4	N/A	no	0.387	0.255	0.263	9e-13

>sp|Q5BIM8|ERCC8_BOVIN DNA excision repair protein ERCC-8 OS=Bos taurus GN=ERCC8 PE=2 SV=1

 Score =  243 bits (620), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/424 (33%), Positives = 208/424 (49%), Gaps = 63/424 (14%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           M   +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+L
Sbjct: 1   MLGFLSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHCSGVNTLDIEPVEGRYML 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SG SD  + +YD++ ++           ++V  V + H   HKY++ +  WYP DTG+F 
Sbjct: 61  SGGSDGVIVLYDLENSSRQP----YYTCKAVCSVGRSHPDVHKYSVETVQWYPHDTGMFT 116

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           + S+D  +KVWDTN  ++   F     VY   MSP+A  H L+A GT   +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQIADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVQLCDLKSG 176

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
           + S  L GHR  I+ V WS   E+IL T   D   + WD+RRA GC   LDQ        
Sbjct: 177 SCSHILQGHRQEILAVSWSPRYEYILATASADSRAKLWDVRRASGCLITLDQHNG----- 231

Query: 240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR 299
                +KS +A              SAN                                
Sbjct: 232 -----KKSQAA-------------ESAN-------------------------------- 241

Query: 300 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359
            TAH G V GL  T DG++LL+ G+D+R+RLW+  +G NTLVN+  V   + K ++   +
Sbjct: 242 -TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVYNDSRKGLKFTVS 300

Query: 360 Q--DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417
                  VFVP  + +  + I+SG+     +GHY+ V+CC F S  QELY+G  D  IL 
Sbjct: 301 SGCSSEFVFVPYGSTIAVYTIYSGEQITMLKGHYKSVDCCVFQSNFQELYSGSRDCNILA 360

Query: 418 WCPS 421
           W PS
Sbjct: 361 WVPS 364

Substrate-recognition component of the CSA complex, a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex, involved in transcription-coupled nucleotide excision repair. The CSA complex (DCX(ERCC8) complex) promotes the ubiquitination and subsequent proteasomal degradation of ERCC6 in a UV-dependent manner; ERCC6 degradation is essential for the recovery of RNA synthesis after transcription-coupled repair. It is required for the recruitment of XAB2, HMGN1 and TCEA1/TFIIS to a transcription-coupled repair complex which removes RNA polymerase II-blocking lesions from the transcribed strand of active genes.
Bos taurus (taxid: 9913)

>sp|Q8CFD5|ERCC8_MOUSE DNA excision repair protein ERCC-8 OS=Mus musculus GN=Ercc8 PE=2 SV=2

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 214/443 (48%), Gaps = 65/443 (14%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           M   +  R++G   P        + R+  L+L+  +++   H   +N+L ++  E RY+L
Sbjct: 1   MLSFLSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYML 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SG SD  V +YD++ A+      H    ++V  V + H   HKY++ +  WYP DTG+F 
Sbjct: 61  SGGSDGVVVLYDLENASRQP---HYTC-KAVCSVGRSHPDVHKYSVETVQWYPHDTGMFT 116

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           + S+D  +KVWDTN  +    F     VY   MSP A  H L+A GT   +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSG 176

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
           + S  L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ        
Sbjct: 177 SCSHILQGHRQEILAVSWSPRHDYILATASADSRVKLWDVRRASGCLLTLDQHNG----- 231

Query: 240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR 299
                +KS +A              SAN                                
Sbjct: 232 -----KKSQAA-------------ESAN-------------------------------- 241

Query: 300 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359
            TAH G V GL  T DG++LL+ G+D+R+RLW+  SG NTLVN+  V   + K +Q A +
Sbjct: 242 -TAHNGKVNGLCFTSDGLHLLTIGTDNRMRLWNSSSGDNTLVNYGKVCNDSRKGLQFAVS 300

Query: 360 --QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417
                  VFVP  + +  + + SG+     +GHY+ V+CC F    QELY+G  D  IL 
Sbjct: 301 CGCSSEFVFVPHGSTIAVYAVHSGERLAMLKGHYKSVDCCVFQPNFQELYSGSRDCNILA 360

Query: 418 WCPSRH--ISDGVDAGPMQDQDN 438
           W P  +  + D  D  P + Q N
Sbjct: 361 WVPPSYEPVPDDDDEAPAKSQLN 383

Involved in transcription-coupled nucleotide excision repair (By similarity). It is required for the recruitment of XAB2, HMGN1 and TCEA1/TFIIS to a transcription-coupled repair complex which removes RNA polymerase II-blocking lesions from the transcribed strand of active genes (By similarity). It is the substrate-recognition component of the CSA complex (DCX(ERCC8) complex) which promotes the ubiquitination and subsequent proteasomal degradation of ERCC6 in a UV-dependent manner; ERCC6 degradation is essential for the recovery of RNA synthesis after transcription-coupled repair.

Mus musculus (taxid: 10090)

>sp|Q13216|ERCC8_HUMAN DNA excision repair protein ERCC-8 OS=Homo sapiens GN=ERCC8 PE=1 SV=1

 Score =  233 bits (593), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/426 (30%), Positives = 205/426 (48%), Gaps = 63/426 (14%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           M   +  R+ G   P        + R+  L+L+  +++   H G IN+L ++  E RY+L
Sbjct: 1   MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SG SD  + +YD++ ++           ++V  + + H   H+Y++ +  WYP DTG+F 
Sbjct: 61  SGGSDGVIVLYDLENSSRQS----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           + S+D  +KVWDTN  +    F     VY   MSP++  H L+A GT   +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
           + S  L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ   +    
Sbjct: 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---- 232

Query: 240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR 299
                            K +A +  +   NG                             
Sbjct: 233 -----------------KSQAVESANTAHNG----------------------------- 246

Query: 300 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359
                  V GL  T DG++LL+ G+D+R+RLW+  +G NTLVN+  V   + K ++   +
Sbjct: 247 ------KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300

Query: 360 --QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417
                  VFVP  + +  + ++SG+     +GHY+ V+CC F S  QELY+G  D  IL 
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360

Query: 418 WCPSRH 423
           W PS +
Sbjct: 361 WVPSLY 366

Substrate-recognition component of the CSA complex, a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex, involved in transcription-coupled nucleotide excision repair. The CSA complex (DCX(ERCC8) complex) promotes the ubiquitination and subsequent proteasomal degradation of ERCC6 in a UV-dependent manner; ERCC6 degradation is essential for the recovery of RNA synthesis after transcription-coupled repair. It is required for the recruitment of XAB2, HMGN1 and TCEA1/TFIIS to a transcription-coupled repair complex which removes RNA polymerase II-blocking lesions from the transcribed strand of active genes.

Homo sapiens (taxid: 9606)

>sp|Q9USR0|CKN1_SCHPO DNA excision repair protein ckn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ckn1 PE=1 SV=1

 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 190/427 (44%), Gaps = 76/427 (17%)

Query: 7   GREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHK----GSINSLQVDLTEERYLLSG 62
            RE GQ   +SF  ++  HRL  L L+   +I   H     GS+N+L +D T  + ++SG
Sbjct: 7   AREWGQEPNSSFRRQLLQHRLQRLALNPDVKIKRRHGAGILGSVNALSIDNTIHQLMVSG 66

Query: 63  ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122
            ++SS+ V+D+Q     E    I    +           HK+ I+   W+P D G+F + 
Sbjct: 67  GANSSINVWDLQNIDQKEDEDLILDTLNAVPA----RTSHKFGITDLHWFPFDNGIFTSS 122

Query: 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182
           S+DH +KVWD +  +    F M   +Y  A SP+A SH LIA       +RLCD+ SG+ 
Sbjct: 123 SFDHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIA-SHCLIATAYRSSSIRLCDMQSGSY 181

Query: 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPP 241
           + +LSGH   ++ V+W   +E++L +G  DG  R WDIR+ +  F  +D           
Sbjct: 182 THSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMD----------- 230

Query: 242 LLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT 301
            L  K L + Q +                                               
Sbjct: 231 -LHNKYLPSNQTN----------------------------------------------I 243

Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF-ETVRLQTSK------PI 354
           +HYG V GL  T D  YL S G+D RIR+W++ESGRNTL  F   +  QT+        I
Sbjct: 244 SHYGTVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHPCMI 303

Query: 355 QLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH-YEYVNCCCFSSQDQELYTGGNDR 413
           Q +   D  V+F     ++   ++  G        H  + +NC  +    ++ +TG  + 
Sbjct: 304 QPSMDSDVFVLFPNDDGSLALLNLLEGSFVRRLSTHSLKRINCAAYRPDFEQCFTGDMNG 363

Query: 414 QILVWCP 420
            I +W P
Sbjct: 364 NIYMWSP 370

Adapter protein for ddb1/cullin 4 ubiquitin ligases involved in transcription-coupled nucleotide excision repair.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 134/327 (40%), Gaps = 54/327 (16%)

Query: 101  GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
            GH   ++S + +  D  +  +GS D  V++WD +  + +  FK  G   R      + + 
Sbjct: 904  GHNSWVNS-VGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFK--GHTSRVRSVVFSPNS 960

Query: 161  MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
            +++A+G+ D  VRL DI+SG       GH   + +V ++     +L TG  D  +R WDI
Sbjct: 961  LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGS-MLATGSGDQTVRLWDI 1019

Query: 221  RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280
              + CF +                      G  S V+             V  SS G + 
Sbjct: 1020 SSSQCFYIFQ--------------------GHTSCVR------------SVVFSSDGAML 1047

Query: 281  AKGSVRQRLHPGMLSSQD---RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337
            A GS  Q +    +SS +       H   V  +  + DG  L S G D  +RLWD+ SG 
Sbjct: 1048 ASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSG- 1106

Query: 338  NTLVNFET----VRLQTSKP--IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY 391
            N L   +     VR     P  + LA      +        V+ +DI S K   T +GH 
Sbjct: 1107 NCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQI--------VRLWDISSKKCLYTLQGHT 1158

Query: 392  EYVNCCCFSSQDQELYTGGNDRQILVW 418
             +VN   FS     L +G  D+ + +W
Sbjct: 1159 NWVNAVAFSPDGATLASGSGDQTVRLW 1185

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|O74855|NLE1_SCHPO Ribosome assembly protein C18.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.05c PE=3 SV=1

 Score = 85.5 bits (210), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 163/399 (40%), Gaps = 53/399 (13%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G+I S Q   +    L++G+ D +  ++D    T       IA  +           G
Sbjct: 133 HDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTP------IATMK-----------G 175

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS-- 159
           H   +S   W P D  +  TGS D+ ++ WD      +      G   R    P+ A   
Sbjct: 176 HTNWVSCVAWAP-DASIIATGSMDNTIRFWDPKKGSPI------GDALRRHTKPIMALCW 228

Query: 160 ---HM-------LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG 209
              H+       L+A+G++D  VR+ ++    +  TLSGH   I  V W     WI  + 
Sbjct: 229 QPLHLAPDSGPYLLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWG-GQNWIY-SS 286

Query: 210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG--QNSSVKPRA--PQKRS 265
             D  IR WD +   C  +L    +++     L     L +G   ++  KP++   ++R 
Sbjct: 287 SYDKTIRIWDAKDGKCLHILKGHAARVNHLS-LSTEHVLRSGAYDHTDFKPKSFSDERRK 345

Query: 266 ANGN---GVRQSSVGRIPAKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLL 320
           A       ++QS    + A   ++  L     S++   +   H   V     + DG  + 
Sbjct: 346 AKERYEACLKQSGERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPDGRCIA 405

Query: 321 SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIW 379
           +A  DS +RLWD ++G+       T+R   +   Q A + D  ++      T +K +D+ 
Sbjct: 406 TASFDSSVRLWDGKTGKF----LATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWDVR 461

Query: 380 SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
           S K      GH + V    +S   Q + +GG D+ + +W
Sbjct: 462 SKKMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIW 500

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 164/385 (42%), Gaps = 55/385 (14%)

Query: 59  LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118
           +++GA D++  ++D     D +   H  K             GH   +    W P D  +
Sbjct: 159 MVTGAGDNTARIWDC----DTQTPMHTLK-------------GHYNWVLCVSWSP-DGEV 200

Query: 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMS--PL----AASHMLIAAGTEDVQV 172
             TGS D+ +++WD    + + +       + T++S  P+      S   +A+ ++D  +
Sbjct: 201 IATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDGTI 260

Query: 173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQ 231
           ++ D  S     T+SGH + +  V+W    + +L +G  D  +R WDI   G C  +L +
Sbjct: 261 KIWDTVSRVCQYTMSGHTNSVSCVKWG--GQGLLYSGSHDRTVRVWDINSQGRCINIL-K 317

Query: 232 SQSQLGRRPPLLKRKSLSAG--QNSSVKPRAP---QKRS---------ANGNGVRQSSVG 277
           S +       L    +L  G   ++  KP  P   QK++          NGN    S   
Sbjct: 318 SHAHWVNHLSLSTDYALRIGAFDHTGKKPSTPEEAQKKALENYEKICKKNGN----SEEM 373

Query: 278 RIPAKGSVRQRLHPGMLSSQD--RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335
            + A       L   + S++   R T H   V  +  + DG Y++SA  D+ I+LWD   
Sbjct: 374 MVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRD 433

Query: 336 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEY 393
           G+       T R   +   Q+A + D   + V C   T +K +D+ + K  +   GH + 
Sbjct: 434 GK----FISTFRGHVASVYQVAWSSD-CRLLVSCSKDTTLKVWDVRTRKLSVDLPGHKDE 488

Query: 394 VNCCCFSSQDQELYTGGNDRQILVW 418
           V    +S   + + +GG D+ + +W
Sbjct: 489 VYTVDWSVDGKRVCSGGKDKMVRLW 513

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 150/381 (39%), Gaps = 62/381 (16%)

Query: 42   HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
            H  S+ S+      +R + SG+ D ++ ++D    T                   Q   G
Sbjct: 840  HGSSVLSVAFSADGQR-VASGSDDKTIKIWDTASGTG-----------------TQTLEG 881

Query: 102  HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAA 158
            H  ++ S  + P D     +GS D  +K+WD     CT+ +      G+V   A SP   
Sbjct: 882  HGGSVWSVAFSP-DRERVASGSDDKTIKIWDAASGTCTQTLEGHG--GRVQSVAFSP--- 935

Query: 159  SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
                +A+G++D  +++ D ASG  +QTL GH   +++V +S   + +  +G  D  I+ W
Sbjct: 936  DGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRV-ASGSGDKTIKIW 994

Query: 219  DIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR 278
            D     C + L+                    G   SV      +R A+G+  +   +  
Sbjct: 995  DTASGTCTQTLEG-----------------HGGSVWSVAFSPDGQRVASGSDDKTIKIWD 1037

Query: 279  IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338
              A G+  Q L             H G V  +  + DG  + S   D  I++WD  SG  
Sbjct: 1038 T-ASGTCTQTLE-----------GHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTC 1085

Query: 339  TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTFRGHYEYVNCC 397
            T    +T+         +A + D   V    +   +K +D  SG    T  GH  +V+  
Sbjct: 1086 T----QTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSV 1141

Query: 398  CFSSQDQELYTGGNDRQILVW 418
             FS   Q + +G  D  I +W
Sbjct: 1142 AFSPDGQRVASGSIDGTIKIW 1162

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|B4JPT9|WDR12_DROGR Ribosome biogenesis protein WDR12 homolog OS=Drosophila grimshawi GN=GH13339 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H+ S++S+ V    +R+  +G+ D+ + ++  +     EG    AK   V    K    G
Sbjct: 192 HERSVDSVAVSPDAQRFA-TGSWDTMLKLWSAELEDAVEGSAKRAKESGV-RTPKMTLQG 249

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+ +IS+  W  +D    +TGS+DH +KVWD N   +         ++    S L   + 
Sbjct: 250 HRESISAVQW--MDGTTLLTGSWDHTLKVWDLNLEGIKTEISTNKSIFDANFSKL---NR 304

Query: 162 LIAAGTEDVQVRLCDIASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
           LI   + D  +RL D  +     +  T  GH   + TV WST+ E++ V+G  D   + W
Sbjct: 305 LIVTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQNKLW 364

Query: 219 DIR--RAGCFRVLDQSQSQL 236
           D R  +A  + +L   +  L
Sbjct: 365 DCRSPKAPLYDLLGHGEKVL 384

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila grimshawi (taxid: 7222)

>sp|A7TNS8|CAF4_VANPO CCR4-associated factor 4 homolog OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=CAF4 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 38/209 (18%)

Query: 39  VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGG-----GHIAKHRSVFV 93
            + H  +IN +Q+D T+++ ++SG  DS V ++D+++  DY         +  +   +F 
Sbjct: 392 FNAHLSTINCMQLD-TQQQIIISGGRDSLVRLWDIKKFQDYSTNYNDIENYYEETNCIFE 450

Query: 94  VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV----- 148
            D      H   ISS  +   D    +TGS D  +K WD    + V  F +   +     
Sbjct: 451 CD-----SHSDEISSISY---DNFNLLTGSQDKTIKHWDLITGKCVQTFDVSFYLNNSPP 502

Query: 149 YRTAMSPLAASHML----------------IAAGTEDVQVRLCDIASGAISQTLSGHRDG 192
           +    SP   ++                  +A+GT+D  +RL D+ SG + + L GH D 
Sbjct: 503 FENKFSPTKKNYFAHSEAPTIGSLQCFESALASGTKDGLIRLWDLRSGKVIRILEGHTDA 562

Query: 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
           I ++++  ++   L+TG  D  IR WD+R
Sbjct: 563 ITSLKFDMTN---LITGSLDKNIRIWDMR 588

Involved in mitochondrial fission. Has a partially redundant function to MDV1 in acting as an adapter protein required to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division.

Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (taxid: 436907)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
255538060	479	WD-repeat protein, putative [Ricinus com	0.995	0.916	0.792	0.0
224127270	449	predicted protein [Populus trichocarpa]	0.997	0.979	0.786	0.0
302142198	458	unnamed protein product [Vitis vinifera]	1.0	0.962	0.766	0.0
225458838	450	PREDICTED: DNA excision repair protein E	0.984	0.964	0.743	0.0
449450283	446	PREDICTED: DNA excision repair protein E	0.993	0.982	0.741	0.0
356510566	460	PREDICTED: DNA excision repair protein E	0.995	0.954	0.736	0.0
356514489	466	PREDICTED: LOW QUALITY PROTEIN: DNA exci	0.997	0.944	0.704	0.0
22329825	450	transducin/WD-40 repeat-containing prote	1.0	0.98	0.691	0.0
297851220	450	ATCSA-1 [Arabidopsis lyrata subsp. lyrat	1.0	0.98	0.691	0.0
79318736	451	transducin/WD-40 repeat-containing prote	1.0	0.977	0.689	0.0

>gi|255538060|ref|XP_002510095.1| WD-repeat protein, putative [Ricinus communis] gi|223550796|gb|EEF52282.1| WD-repeat protein, putative [Ricinus communis]

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/449 (79%), Positives = 397/449 (88%), Gaps = 10/449 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MW+EI  RE+G+ RPNSF NRVKS+R++ LQLSNYKEIVSPH+G+INSLQVDLTE RYL+
Sbjct: 33  MWREIRDRESGKTRPNSFTNRVKSNRIANLQLSNYKEIVSPHRGAINSLQVDLTEGRYLI 92

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGASD+S AV+DVQRATD+E  G IAKH+ +F+VDKQHE  HKYA+SSA WYPVDTGLFV
Sbjct: 93  SGASDASAAVFDVQRATDFEDEGVIAKHKCLFIVDKQHETAHKYAVSSATWYPVDTGLFV 152

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDHY+KVWDTN T+VV+NFK+PGKVYRTAMSPLA SHMLIAAGTEDVQVRLCDIASG
Sbjct: 153 TGSYDHYIKVWDTNTTQVVVNFKLPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDIASG 212

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A + TLSGHRDG+MTVEWSTSSEW+LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP
Sbjct: 213 AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 272

Query: 241 PLLKR--------KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 292
           P+L R        +SL AGQ+ S K RAP K+SA GNG +QS +GR P KG VRQRLHPG
Sbjct: 273 PVLPRSVANKVSSRSLLAGQHLSSKSRAPLKKSATGNGKKQSPLGRTPVKGPVRQRLHPG 332

Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
           MLS QDRATAHYGAVTGLK+TEDGMYLLSAGSDSR+RLWD+ESG NTLVNFETVRLQTSK
Sbjct: 333 MLSIQDRATAHYGAVTGLKITEDGMYLLSAGSDSRMRLWDLESGCNTLVNFETVRLQTSK 392

Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
            IQLATTQD ++VFVPCMTAVKAFD+WSG T +TFRGHYEYVNCC +SSQDQE+YTGGND
Sbjct: 393 AIQLATTQDSSLVFVPCMTAVKAFDLWSGMTSMTFRGHYEYVNCCWYSSQDQEIYTGGND 452

Query: 413 RQILVWCPSRHISDGVDAGPMQDQDNWSD 441
           RQILVWCP R I   ++ GP +DQDNWSD
Sbjct: 453 RQILVWCPPRLID--METGPAEDQDNWSD 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127270|ref|XP_002320030.1| predicted protein [Populus trichocarpa] gi|222860803|gb|EEE98345.1| predicted protein [Populus trichocarpa]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/450 (78%), Positives = 399/450 (88%), Gaps = 10/450 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MW+EI  REAG+ RPNSF NRV S R+S LQLSNYK++VSPH+GSINSLQVDLTE RYLL
Sbjct: 1   MWREIRDREAGKTRPNSFKNRVSSSRISNLQLSNYKDVVSPHRGSINSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGH---IAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           SGASD+S +V+D+Q ATD+EGGG    IAKH+S+  +DKQH++GHK+AISSAIWYP+DTG
Sbjct: 61  SGASDASASVFDIQHATDFEGGGEGALIAKHKSLITIDKQHQNGHKFAISSAIWYPIDTG 120

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
           LFVTGSYDHY+KVWDTN T++V+NFK+PGKVYRTAMSPLA SHMLIAAGTEDVQVRLCDI
Sbjct: 121 LFVTGSYDHYIKVWDTNSTQMVINFKLPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDI 180

Query: 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG 237
           ASGA + TLSGHRDG+MTVEWSTSSEW+LVTGGCDGAIRFWDIRRAGCF VLDQSQSQLG
Sbjct: 181 ASGAFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLG 240

Query: 238 RRPPLLKR------KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 291
           RRPP+L R      K+LS GQN   KPR PQK+S  GNG++ S +G++PAKG ++QRLHP
Sbjct: 241 RRPPVLARSAVSTSKALSKGQNLLGKPRMPQKKSGGGNGIKHSPLGQVPAKGYLKQRLHP 300

Query: 292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351
           GMLSSQDRATAHYGAVTGLK+TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET RLQTS
Sbjct: 301 GMLSSQDRATAHYGAVTGLKITEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETARLQTS 360

Query: 352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411
           KPIQLAT QD  +VFVPCMT+VKAFD+WSGKT +TFRGHYE+VNCC FSSQDQELYTGGN
Sbjct: 361 KPIQLATAQDSNLVFVPCMTSVKAFDVWSGKTYVTFRGHYEHVNCCWFSSQDQELYTGGN 420

Query: 412 DRQILVWCPSRHISDGVDAGPMQDQDNWSD 441
           DRQILVW P+R I +  DA P +DQDNWSD
Sbjct: 421 DRQILVWSPARLIPN-EDASPAEDQDNWSD 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142198|emb|CBI19401.3| unnamed protein product [Vitis vinifera]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/458 (76%), Positives = 397/458 (86%), Gaps = 17/458 (3%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MWK++G REAG++RP SF+NR+ S R+++LQLSNYKEIVSPH+G++NSLQVDLTE RYLL
Sbjct: 1   MWKDLGDREAGKLRPYSFSNRITSDRIASLQLSNYKEIVSPHRGAVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGASD+S AVYD+QRAT+YEGG  +AKH+S+FVVDKQHEHGHKYAISSAIWYP+DTGLF+
Sbjct: 61  SGASDASAAVYDIQRATEYEGGSLVAKHKSIFVVDKQHEHGHKYAISSAIWYPIDTGLFI 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDHY+ VWDTN T+VV+NFKMPGK+YRTAMS LA +HMLIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSYDHYINVWDTNTTQVVVNFKMPGKIYRTAMSSLATAHMLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A + TLSGHRDG+MTVEWSTSSEW+LVTGGCDGAIRFWDIRRAGCF VLDQSQSQLGRRP
Sbjct: 181 AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRP 240

Query: 241 PLLK---------RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP--AKGSVRQRL 289
           PLL+          KS  A Q+ +V+ RAPQ++ A GNG +QS+ GR    AKG VRQRL
Sbjct: 241 PLLECSTANKAPMSKSFPASQSVNVRSRAPQRKFAYGNGSKQSATGRTSSQAKGLVRQRL 300

Query: 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 349
           HPGMLSSQDRAT+HYGAVTGLKVT+DGMYLLSAGSDSR+RLWD+ SG NTLVNFETVRLQ
Sbjct: 301 HPGMLSSQDRATSHYGAVTGLKVTDDGMYLLSAGSDSRLRLWDIMSGCNTLVNFETVRLQ 360

Query: 350 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 409
           TSK +QLA T D A+VFVPCMTAVKAFD+WSGKT +TFRGHYEYVNCC  S QDQELYTG
Sbjct: 361 TSKAMQLAITNDSALVFVPCMTAVKAFDVWSGKTAMTFRGHYEYVNCCWLSLQDQELYTG 420

Query: 410 GNDRQILVWCPSRHISDGVDAG----PM--QDQDNWSD 441
           GNDRQILVW PSR   D +D G    P+  QDQDNWSD
Sbjct: 421 GNDRQILVWSPSRLNFDEMDHGSREEPIHAQDQDNWSD 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458838|ref|XP_002285324.1| PREDICTED: DNA excision repair protein ERCC-8-like [Vitis vinifera]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/457 (74%), Positives = 385/457 (84%), Gaps = 23/457 (5%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MWK++G REAG++RP SF+NR+ S R+++LQLSNYKEIVSPH+G++NSLQVDLTE RYLL
Sbjct: 1   MWKDLGDREAGKLRPYSFSNRITSDRIASLQLSNYKEIVSPHRGAVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGASD+S AVYD+QRAT+YEGG  +AKH+S+FVVDKQHEHGHKYAISSAIWYP+DTGLF+
Sbjct: 61  SGASDASAAVYDIQRATEYEGGSLVAKHKSIFVVDKQHEHGHKYAISSAIWYPIDTGLFI 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDHY+ VWDTN T+VV+NFKMPGK+YRTAMS LA +HMLIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSYDHYINVWDTNTTQVVVNFKMPGKIYRTAMSSLATAHMLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A + TLSGHRDG+MTVEWSTSSEW+LVTGGCDGAIRFWDIRRAGCF VLDQSQSQLGRRP
Sbjct: 181 AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRP 240

Query: 241 PLLK----------RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 290
           PLL+          ++++S G    +     +  SA G    Q       AKG VRQRLH
Sbjct: 241 PLLECSTANKVSFLKQNVSMGMEVGLHVLHSKTGSATGRTSSQ-------AKGLVRQRLH 293

Query: 291 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350
           PGMLSSQDRAT+HYGAVTGLKVT+DGMYLLSAGSDSR+RLWD+ SG NTLVNFETVRLQT
Sbjct: 294 PGMLSSQDRATSHYGAVTGLKVTDDGMYLLSAGSDSRLRLWDIMSGCNTLVNFETVRLQT 353

Query: 351 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG 410
           SK +QLA T D A+VFVPCMTAVKAFD+WSGKT +TFRGHYEYVNCC  S QDQELYTGG
Sbjct: 354 SKAMQLAITNDSALVFVPCMTAVKAFDVWSGKTAMTFRGHYEYVNCCWLSLQDQELYTGG 413

Query: 411 NDRQILVWCPSRHISDGVDAG----PM--QDQDNWSD 441
           NDRQILVW PSR   D +D G    P+  QDQDNWSD
Sbjct: 414 NDRQILVWSPSRLNFDEMDHGSREEPIHAQDQDNWSD 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450283|ref|XP_004142893.1| PREDICTED: DNA excision repair protein ERCC-8-like [Cucumis sativus] gi|449482714|ref|XP_004156381.1| PREDICTED: DNA excision repair protein ERCC-8-like [Cucumis sativus]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/449 (74%), Positives = 382/449 (85%), Gaps = 11/449 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MWK I  REAG++RPNSFANRVKS R S+LQLSN+K+IVSPH+GS+NSLQVDLTE RYLL
Sbjct: 1   MWKNIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGASD+S AV+D+QRAT  EG   IAKH+ +F VDKQHEHGHKYAISSAIWYPVDTGLFV
Sbjct: 61  SGASDASAAVFDIQRATHSEG--LIAKHQCIFAVDKQHEHGHKYAISSAIWYPVDTGLFV 118

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGS+DH++ VWDTN T+VV+NFK+PGKVYRTAMS LA SHMLIAAGTEDVQVRLCDI+SG
Sbjct: 119 TGSFDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSG 178

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A S TLSGHRDG+M+VEWS SSEW+L+TGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP
Sbjct: 179 AFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 238

Query: 241 P--------LLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 292
           P        L   KSL A Q S++K R P K+  NGN  + SS G++PAKGS RQRLHPG
Sbjct: 239 PISGWTANKLSTSKSLLASQGSNMKSRIPHKKLTNGNATKPSSTGKLPAKGSTRQRLHPG 298

Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
           +LS QDRA +HYGAVTGLKVT DGMYLLSAGSDSR++LWDVESG NTLVNFET+RLQT+K
Sbjct: 299 LLSGQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNFETIRLQTNK 358

Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
           P+QLAT+QD ++VF PCM  VKAFD+W+GKT LTF GHYE VNCC ++  DQELYTGGND
Sbjct: 359 PLQLATSQDSSLVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGND 418

Query: 413 RQILVWCPSRHISDGVDAGPMQDQDNWSD 441
           RQILVW PS++ ++ +D     D+DNWSD
Sbjct: 419 RQILVWSPSQNSTE-LDWESTADKDNWSD 446

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510566|ref|XP_003524008.1| PREDICTED: DNA excision repair protein ERCC-8-like [Glycine max]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/452 (73%), Positives = 383/452 (84%), Gaps = 13/452 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           +WK I  REAG++R N FANR+KS+R+S LQLSN+K+IVSPHKG+INSLQVD TE RYLL
Sbjct: 9   VWKRIRDREAGKLRANHFANRIKSNRISQLQLSNHKDIVSPHKGAINSLQVDSTEGRYLL 68

Query: 61  SGASDSSVAVYDVQRATDYEGGGH----IAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116
           S ASD+SVAVYDVQR T YE GG     I+KH S+FVVDKQH+ GHKYA+S+AIWYP+DT
Sbjct: 69  SAASDASVAVYDVQRPTVYEAGGGGGGGISKHSSIFVVDKQHQQGHKYAVSTAIWYPIDT 128

Query: 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176
           GLFVTGSYDH++ VWDTN T+VV+NFKMPGKV+R AMS L+ SHMLIAA TEDVQVRLCD
Sbjct: 129 GLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCD 188

Query: 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236
           IASGA + TLSGHRDG+MTVEWS SSEW+LVTGGCDGAIRFWDIRRAGCF+VLDQSQ+QL
Sbjct: 189 IASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQL 248

Query: 237 GRRPPLLKR--------KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR 288
           GRRPP+LKR        +SL   Q+SS K RA QK+ ANG+G RQ  +GR+P+KG ++QR
Sbjct: 249 GRRPPILKRSMITKVKSQSLYHSQDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQR 308

Query: 289 LHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 348
           LHPGMLS+QDRATAHYGAVTGLK TEDGMYLLSAGSDSR+RLWDVES  NTLVNFETVRL
Sbjct: 309 LHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESSCNTLVNFETVRL 368

Query: 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 408
           Q +KP+QLATTQD A+VFVPCM +VKAFD+WSG T    RGHYE VN C F+  DQELYT
Sbjct: 369 QINKPLQLATTQDSALVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQHDQELYT 428

Query: 409 GGNDRQILVWCPSRHISDGVDAGPMQDQDNWS 440
           GGNDRQILVW P+R I+D ++ G  +DQDNWS
Sbjct: 429 GGNDRQILVWSPARSIADEME-GTAEDQDNWS 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514489|ref|XP_003525938.1| PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8-like [Glycine max]

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/457 (70%), Positives = 377/457 (82%), Gaps = 17/457 (3%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           +WK I  REAG++  + FANR+K +R+S LQLSN+K+IVSPHKG+INSLQ+D TE RYLL
Sbjct: 9   VWKRIRDREAGKLHASHFANRIKWNRISQLQLSNHKDIVSPHKGAINSLQIDSTEGRYLL 68

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           S ASD+SVAVYDVQR T YE GG I+KH S+FVVDKQH+  HKYA+SSAIWYP+DTGLFV
Sbjct: 69  SAASDASVAVYDVQRPTVYEAGGVISKHSSIFVVDKQHQQAHKYAVSSAIWYPIDTGLFV 128

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDH++ VWDTN T+VV+NFKMPGKV+R AMS L+ SHMLIAA TEDVQVRLCDIASG
Sbjct: 129 TGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCDIASG 188

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A + TLSGHRDG+MTVEWS SSEW+LVTGGCDGAIRFWDIRRAGCF+VLDQS++QLGRRP
Sbjct: 189 AFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSRTQLGRRP 248

Query: 241 PLLKRKSLS-----------------AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 283
            +L    ++                   Q+SS K  A QK+ ANG+G RQ  +GR+P+KG
Sbjct: 249 TILNHSMITKVFFFIFXFSISADTFIGSQDSSTKLSAAQKKHANGSGSRQQLIGRVPSKG 308

Query: 284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 343
            ++Q+LHPGMLS+QDRATAHYGAVTGLK TEDGMYLLSAGSDSR+RLWDVESG +TLVNF
Sbjct: 309 PMKQKLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESGCDTLVNF 368

Query: 344 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD 403
           ETVRLQ +KP+QLATTQD  +VFVPCM +VKAFD+WSG T    RGHYE VN C F+ QD
Sbjct: 369 ETVRLQVNKPLQLATTQDSTLVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQQD 428

Query: 404 QELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWS 440
           QELYTGGNDRQILVW P+R ++D +D GP +DQDNWS
Sbjct: 429 QELYTGGNDRQILVWSPARSMADEMDEGPAEDQDNWS 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329825|ref|NP_174105.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|15982897|gb|AAL09795.1| At1g27840/F28L5_15 [Arabidopsis thaliana] gi|18377624|gb|AAL66962.1| unknown protein [Arabidopsis thaliana] gi|20465583|gb|AAM20274.1| unknown protein [Arabidopsis thaliana] gi|332192760|gb|AEE30881.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/450 (69%), Positives = 361/450 (80%), Gaps = 9/450 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MW+ I  RE G+IR NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct: 1   MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGA+D S AV+DVQRATDYE  G IAKH+ +F VDKQHE+GHKYAISSAIWYP+DTGLF+
Sbjct: 61  SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFI 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGS+DHY+KVWDTN  + V++FKMPGKVYRTAMS +A SH LIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLDQSQ+QLG RP
Sbjct: 181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP 240

Query: 241 PLLKRKSLSAGQNSSVKP--------RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 292
           P+LKR ++ +  +S  K         +  Q +      V+ SS  +   + S ++R+HPG
Sbjct: 241 PILKRTAVGSKLSSVAKSSLGGQNRLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRIHPG 300

Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
           MLS+ DRATAHYGAVTGLK T DGMYLLSAGSDSRIRLWD+ESGRNTLVNFET R+QT+K
Sbjct: 301 MLSTLDRATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNK 360

Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
            IQL T+ DPA+VFVPCM  VKAF +WSG+T L  RGHYE VN CCF+S DQELYT G+D
Sbjct: 361 GIQLDTSDDPALVFVPCMKTVKAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGSD 420

Query: 413 RQILVWCPSRHISDG-VDAGPMQDQDNWSD 441
           RQILVW P   + D  V     +D+DNWSD
Sbjct: 421 RQILVWSPGGTVEDEMVQDEVAEDKDNWSD 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851220|ref|XP_002893491.1| ATCSA-1 [Arabidopsis lyrata subsp. lyrata] gi|297339333|gb|EFH69750.1| ATCSA-1 [Arabidopsis lyrata subsp. lyrata]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/450 (69%), Positives = 359/450 (79%), Gaps = 9/450 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MWK I  RE G+IR NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct: 1   MWKAIKDRETGRIRSNSFANRFKSGRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGA+D S AV+DVQRATDYE  G IAKH+ +F VDKQH++GHK+AISSAIWYP+DTGLFV
Sbjct: 61  SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHDNGHKFAISSAIWYPIDTGLFV 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDHY+KVWDTN  + V++FKMPGKVYRTAMS +A SH LIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSYDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLDQSQ+QLG RP
Sbjct: 181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGIRP 240

Query: 241 PLLKRKSLSAGQNSSVKP--------RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 292
           P+LKR ++S+   S+ K         +  Q +      V+ SS  +   + S ++R+HPG
Sbjct: 241 PILKRTAVSSKFYSAAKSSLGGQNRLKTLQSKHTGSQSVKGSSSAKASTEKSRQKRIHPG 300

Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
           MLS+ DRATAHYG VTGLK T DGMYLLSAGSDSRIRLWD+ESGRNTLVNFET R+QT+K
Sbjct: 301 MLSTLDRATAHYGVVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNK 360

Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
            IQL T+ DPA+VFVPCM  VK F +WSG+T L  RGHYE VN CCF+S DQELYT G D
Sbjct: 361 AIQLDTSDDPALVFVPCMKTVKTFGMWSGRTTLMLRGHYESVNTCCFNSSDQELYTSGAD 420

Query: 413 RQILVWCPSRHISDG-VDAGPMQDQDNWSD 441
           RQILVW P   + D  V     +D+DNWSD
Sbjct: 421 RQILVWSPGGSVEDEMVQDEVAEDKDNWSD 450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79318736|ref|NP_001031099.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332192762|gb|AEE30883.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/451 (68%), Positives = 361/451 (80%), Gaps = 10/451 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MW+ I  RE G+IR NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct: 1   MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGA+D S AV+DVQRATDYE  G IAKH+ +F VDKQHE+GHKYAISSAIWYP+DTGLF+
Sbjct: 61  SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFI 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGS+DHY+KVWDTN  + V++FKMPGKVYRTAMS +A SH LIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLDQSQ+QLG RP
Sbjct: 181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP 240

Query: 241 PLLKRKSLSAGQNSSVKP--------RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 292
           P+LKR ++ +  +S  K         +  Q +      V+ SS  +   + S ++R+HPG
Sbjct: 241 PILKRTAVGSKLSSVAKSSLGGQNRLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRIHPG 300

Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
           MLS+ DRATAHYGAVTGLK T DGMYLLSAGSDSRIRLWD+ESGRNTLVNFET R+QT+K
Sbjct: 301 MLSTLDRATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNK 360

Query: 353 PIQLATTQDPAVVFVPCMTAVK-AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411
            IQL T+ DPA+VFVPCM  VK AF +WSG+T L  RGHYE VN CCF+S DQELYT G+
Sbjct: 361 GIQLDTSDDPALVFVPCMKTVKVAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGS 420

Query: 412 DRQILVWCPSRHISDG-VDAGPMQDQDNWSD 441
           DRQILVW P   + D  V     +D+DNWSD
Sbjct: 421 DRQILVWSPGGTVEDEMVQDEVAEDKDNWSD 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2029815	451	ATCSA-1 "AT1G27840" [Arabidops	1.0	0.977	0.694	4.1e-168
TAIR|locus:2035449	450	AT1G19750 "AT1G19750" [Arabido	1.0	0.98	0.673	6.2e-165
UNIPROTKB|E1C100	399	ERCC8 "Uncharacterized protein	0.514	0.568	0.357	2.3e-68
UNIPROTKB|E2RFS7	396	ERCC8 "Uncharacterized protein	0.505	0.563	0.364	1.8e-66
MGI|MGI:1919241	397	Ercc8 "excision repaiross-comp	0.505	0.561	0.368	2.9e-66
UNIPROTKB|F1SKV7	396	ERCC8 "Uncharacterized protein	0.505	0.563	0.372	4.8e-66
UNIPROTKB|Q5BIM8	397	ERCC8 "DNA excision repair pro	0.505	0.561	0.368	4.8e-66
RGD|1311570	397	Ercc8 "excision repair cross-c	0.505	0.561	0.364	1.6e-65
UNIPROTKB|Q13216	396	ERCC8 "DNA excision repair pro	0.505	0.563	0.355	4.2e-65
UNIPROTKB|B3KPW7	338	ERCC8 "DNA excision repair pro	0.383	0.5	0.385	1.8e-58

TAIR|locus:2029815 ATCSA-1 "AT1G27840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1635 (580.6 bits), Expect = 4.1e-168, P = 4.1e-168
 Identities = 313/451 (69%), Positives = 363/451 (80%)

Query:     1 MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
             MW+ I  RE G+IR NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct:     1 MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query:    61 SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
             SGA+D S AV+DVQRATDYE  G IAKH+ +F VDKQHE+GHKYAISSAIWYP+DTGLF+
Sbjct:    61 SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFI 120

Query:   121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
             TGS+DHY+KVWDTN  + V++FKMPGKVYRTAMS +A SH LIAAGTEDVQVRLCDIASG
Sbjct:   121 TGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG 180

Query:   181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
             A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLDQSQ+QLG RP
Sbjct:   181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP 240

Query:   241 PLLKRKS----LSAGQNSSV----KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 292
             P+LKR +    LS+   SS+    + +  Q +      V+ SS  +   + S ++R+HPG
Sbjct:   241 PILKRTAVGSKLSSVAKSSLGGQNRLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRIHPG 300

Query:   293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
             MLS+ DRATAHYGAVTGLK T DGMYLLSAGSDSRIRLWD+ESGRNTLVNFET R+QT+K
Sbjct:   301 MLSTLDRATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNK 360

Query:   353 PIQLATTQDPAVVFVPCMTAVK-AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411
              IQL T+ DPA+VFVPCM  VK AF +WSG+T L  RGHYE VN CCF+S DQELYT G+
Sbjct:   361 GIQLDTSDDPALVFVPCMKTVKVAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGS 420

Query:   412 DRQILVWCPSRHISDG-VDAGPMQDQDNWSD 441
             DRQILVW P   + D  V     +D+DNWSD
Sbjct:   421 DRQILVWSPGGTVEDEMVQDEVAEDKDNWSD 451

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006281 "DNA repair" evidence=IMP

GO:0010224 "response to UV-B" evidence=IMP

TAIR|locus:2035449 AT1G19750 "AT1G19750" [Arabidopsis thaliana (taxid:3702)]

 Score = 1605 (570.0 bits), Expect = 6.2e-165, P = 6.2e-165
 Identities = 303/450 (67%), Positives = 357/450 (79%)

Query:     1 MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
             MWK    RE G+ R NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct:     1 MWKAFKDRETGRFRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query:    61 SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
             SGA+D S AV+DV+RATDYE  G IAKH+ +F V KQHE+GHKYAISSAIWYP+DTG+F+
Sbjct:    61 SGAADGSAAVFDVKRATDYEASGLIAKHKCIFTVRKQHENGHKYAISSAIWYPIDTGMFI 120

Query:   121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
             TGS+DHYVKVWDTN ++VV++FKMPGKVYRTAMS +A SH LIAAGT+DVQVRLCDIASG
Sbjct:   121 TGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTLIAAGTDDVQVRLCDIASG 180

Query:   181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
             A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLD SQ+QLG RP
Sbjct:   181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQTQLGVRP 240

Query:   241 PLLKRKSLSAGQNSSVKP--------RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 292
             P+LKR ++S+   S+ K         +  Q +      V+ SS  +   + S ++R+HPG
Sbjct:   241 PILKRPAVSSKFFSAAKSSLGDQNWLKTLQSKHTGSQSVKGSSSEKPSVEKSRQKRIHPG 300

Query:   293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
             MLS+ DRATAHYG VTGLK T DGMYLLSAGS SRIRLWD+ESGRNTLVNFET R+QT +
Sbjct:   301 MLSTLDRATAHYGVVTGLKATNDGMYLLSAGSYSRIRLWDIESGRNTLVNFETGRIQTDR 360

Query:   353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
              IQL T+ DPA+VFVPCM  VK F +WSG+T L  RGHYE VN CCF+S DQELYT G D
Sbjct:   361 AIQLDTSDDPALVFVPCMKTVKGFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGAD 420

Query:   413 RQILVWCPSRHISDGVDAGPM-QDQDNWSD 441
             RQI+VW P   + D +  G + +D+DNWSD
Sbjct:   421 RQIIVWSPGGSVEDEMAQGEVAEDKDNWSD 450

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|E1C100 ERCC8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 435 (158.2 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 83/232 (35%), Positives = 130/232 (56%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             I  R+AG   P        + R+ +L+L+  +++   H   IN+L ++  E RY+LSG S
Sbjct:     5 ISARQAGLDDPLRLRRAESTRRVLSLELNKDRDVERIHGSGINTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++  +      +  K  ++  V + H   HK+++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENLS--RKPNYTCK--ALCSVGRSHPDAHKFSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +K+WDTN  +    F+  G VY   MSP+A  H LIA GT+  +V+LCD+ SG+ S 
Sbjct:   121 DKTLKIWDTNTLQPADVFQFEGTVYSHHMSPVATKHCLIAVGTKSPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQ 235
              L GHR  ++ V WS   E++L T   D  ++ WD+RRA GC   LDQ   +
Sbjct:   181 ILQGHRQEVLAVSWSPRHEYVLATASADSKVKLWDVRRASGCLTTLDQHNGE 232

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

UNIPROTKB|E2RFS7 ERCC8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 83/228 (36%), Positives = 126/228 (55%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQAGLDHPLRLRRAESTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEARYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ ++      +  K  +V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENSSRQPY--YTCK--AVCSVGRNHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP+A  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   E++L T   D  ++ WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRCEYVLATASADSRVKLWDVRRASGCLITLDQ 228

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

MGI|MGI:1919241 Ercc8 "excision repaiross-complementing rodent repair deficiency, complementation group 8" [Mus musculus (taxid:10090)]

 Score = 422 (153.6 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
 Identities = 84/228 (36%), Positives = 125/228 (54%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R++G   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  V +YD++ A+      H    ++V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVVVLYDLENASRQP---HYTC-KAVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP A  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRHDYILATASADSRVKLWDVRRASGCLLTLDQ 228

GO:0000109 "nucleotide-excision repair complex" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISO

GO:0006289 "nucleotide-excision repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0009411 "response to UV" evidence=ISO;IMP

GO:0010165 "response to X-ray" evidence=IMP

GO:0016363 "nuclear matrix" evidence=ISO

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045739 "positive regulation of DNA repair" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

UNIPROTKB|F1SKV7 ERCC8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 421 (153.3 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
 Identities = 85/228 (37%), Positives = 126/228 (55%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ A+      +  K  +V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENASRQPY--YTCK--AVCSVGRNHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP+A  H L+A GT+  +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVATKHCLVAVGTKGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   E+IL T   D   + WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRYEYILATASADSKAKLWDVRRASGCLITLDQ 228

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

UNIPROTKB|Q5BIM8 ERCC8 "DNA excision repair protein ERCC-8" [Bos taurus (taxid:9913)]

 Score = 419 (152.6 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
 Identities = 84/228 (36%), Positives = 126/228 (55%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHCSGVNTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ ++      +  K  +V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENSSRQPY--YTCK--AVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  ++   F     VY   MSP+A  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQIADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   E+IL T   D   + WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRYEYILATASADSRAKLWDVRRASGCLITLDQ 228

GO:0009411 "response to UV" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0045739 "positive regulation of DNA repair" evidence=ISS

GO:0032403 "protein complex binding" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0006289 "nucleotide-excision repair" evidence=ISS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

RGD|1311570 Ercc8 "excision repair cross-complementing rodent repair deficiency, complementation group 8" [Rattus norvegicus (taxid:10116)]

 Score = 417 (151.9 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 83/228 (36%), Positives = 125/228 (54%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R++G   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERVHCSGVNTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ A+      +  K  +V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENASRQPY--YTCK--AVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP A  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLLTLDQ 228

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009411 "response to UV" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

UNIPROTKB|Q13216 ERCC8 "DNA excision repair protein ERCC-8" [Homo sapiens (taxid:9606)]

 Score = 416 (151.5 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 81/228 (35%), Positives = 126/228 (55%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R+ G   P        + R+  L+L+  +++   H G IN+L ++  E RY+LSG S
Sbjct:     5 LSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ ++      +  K  +V  + + H   H+Y++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENSS--RQSYYTCK--AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP++  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228

GO:0010165 "response to X-ray" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IMP;TAS

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009411 "response to UV" evidence=IMP;IDA

GO:0045739 "positive regulation of DNA repair" evidence=IMP

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IDA;IMP;TAS

GO:0003678 "DNA helicase activity" evidence=IDA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IDA

GO:0000109 "nucleotide-excision repair complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

UNIPROTKB|B3KPW7 ERCC8 "DNA excision repair protein ERCC-8" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
 Identities = 67/174 (38%), Positives = 100/174 (57%)

Query:    59 LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118
             +LSG SD  + +YD++ ++      +  K  +V  + + H   H+Y++ +  WYP DTG+
Sbjct:     1 MLSGGSDGVIVLYDLENSS--RQSYYTCK--AVCSIGRDHPDVHRYSVETVQWYPHDTGM 56

Query:   119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178
             F + S+D  +KVWDTN  +    F     VY   MSP++  H L+A GT   +V+LCD+ 
Sbjct:    57 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 116

Query:   179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
             SG+ S  L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ
Sbjct:   117 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 170

GO:0009411 "response to UV" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13216	ERCC8_HUMAN	No assigned EC number	0.3098	0.8231	0.9166	yes	no
Q5BIM8	ERCC8_BOVIN	No assigned EC number	0.3349	0.8185	0.9093	yes	no
Q8CFD5	ERCC8_MOUSE	No assigned EC number	0.3340	0.8571	0.9521	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XIV0025	hypothetical protein (449 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_I002797	hypothetical protein (1088 aa)					•		•		0.713
	estExt_Genewise1_v1.C_LG_IV2251	hypothetical protein (909 aa)					•	•	•		0.535
	eugene3.00150723	hypothetical protein (401 aa)			•						0.500
	gw1.IX.47.1	hypothetical protein (385 aa)			•						0.499
	fgenesh4_pg.C_LG_XIV000147	hypothetical protein (451 aa)			•						0.476
	gw1.XII.1370.1	hypothetical protein (314 aa)			•						0.474
	gw1.VIII.402.1	hypothetical protein (356 aa)			•						0.471
	eugene3.00070994	hypothetical protein (462 aa)			•						0.470
	eugene3.00160385	hypothetical protein (218 aa)			•						0.469
	gw1.V.3808.1	hypothetical protein (341 aa)			•						0.468

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
smart00320	40	smart00320, WD40, WD40 repeats	9e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (286), Expect = 1e-28
 Identities = 77/322 (23%), Positives = 122/322 (37%), Gaps = 44/322 (13%)

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
           GH   ++   + P D  L  TGS D  +KVWD     ++   K      R   +   A  
Sbjct: 7   GHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS--ADG 63

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
             +A+G+ D  +RL D+ +G   +TL+GH   + +V +S     IL +   D  I+ WD+
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122

Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280
               C   L                     G    V            N V  S  G   
Sbjct: 123 ETGKCLTTLR--------------------GHTDWV------------NSVAFSPDGTFV 150

Query: 281 AKGSVRQRLH---PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337
           A  S    +              T H G V  +  + DG  LLS+ SD  I+LWD+ +G+
Sbjct: 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210

Query: 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNC 396
                  T+R   +    +A + D  ++        ++ +D+ +G+   T  GH   V  
Sbjct: 211 CL----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266

Query: 397 CCFSSQDQELYTGGNDRQILVW 418
             +S   + L +G  D  I +W
Sbjct: 267 LAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 95.2 bits (235), Expect = 4e-21
 Identities = 77/394 (19%), Positives = 150/394 (38%), Gaps = 57/394 (14%)

Query: 36  KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
             ++  H+ SI S+      E  LLSG+SD ++ ++D+                      
Sbjct: 58  SLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLI--------------- 101

Query: 96  KQHEHGHKYAISSAIWYPVDTGLFVT--GSYDHYVKVWD-TNCTRVVMNFKMPGK-VYRT 151
           K  E  H  ++S       D    +    S D  VK+WD +   +++   +   + V   
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL 161

Query: 152 AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC 211
           A SP     +L +  + D  ++L D+ +G    TL+GH D + ++ +S     ++ +G  
Sbjct: 162 AFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Query: 212 DGAIRFWDIRRAGCFR-VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270
           DG IR WD+      R  L      +            S   + +++             
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR------------- 266

Query: 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330
                +  + +  S+ + L           + H  +V  +  + DG  L S  SD  +RL
Sbjct: 267 -----LWDLRSSSSLLRTL-----------SGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310

Query: 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTA--VKAFDIWSGKTCLTFR 388
           WD+E+G+  L++  T++        L+ + D +++         ++ +D+      L   
Sbjct: 311 WDLETGK--LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL-RTGKPLKTL 367

Query: 389 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422
             +  V    FS   + + +G  D  + +W  S 
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 24/189 (12%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   ++S+     + R L S + D ++ V+DV+            K  +          G
Sbjct: 92  HTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETG----------KCLTTL-------RG 133

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASH 160
           H   ++S  + P D     + S D  +K+WD    + V       G+V   A SP     
Sbjct: 134 HTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP---DG 189

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
             + + + D  ++L D+++G    TL GH +G+ +V +S      L +G  DG IR WD+
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDL 248

Query: 221 RRAGCFRVL 229
           R   C + L
Sbjct: 249 RTGECVQTL 257

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 24/179 (13%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   +NS+     +  ++ S + D ++ ++D+        G  +A              G
Sbjct: 134 HTDWVNSVAFS-PDGTFVASSSQDGTIKLWDL------RTGKCVATL-----------TG 175

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASH 160
           H   ++S  + P D    ++ S D  +K+WD +  + +   +     V   A SP     
Sbjct: 176 HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP---DG 231

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
            L+A+G+ED  +R+ D+ +G   QTLSGH + + ++ WS   +  L +G  DG IR WD
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR-LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 73.6 bits (179), Expect = 4e-14
 Identities = 71/337 (21%), Positives = 123/337 (36%), Gaps = 61/337 (18%)

Query: 23  KSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGG 82
            + +L  L+       ++ H   ++SL         + SG+SD ++ ++D+   T     
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--TGKLLR 235

Query: 83  GHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVM 140
             ++ H    V                  +  D  L  +GS D  +++WD   +   +  
Sbjct: 236 STLSGHSDSVV----------------SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279

Query: 141 NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIMTVEW 198
                  V   A SP      L+A+G+ D  VRL D+ +G +  +L+  GH   + ++ +
Sbjct: 280 LSGHSSSVLSVAFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336

Query: 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258
           S     ++  G  DG IR WD+R     + L+                            
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS------------------------- 371

Query: 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRL---HPGMLSSQDRATAHYGAVTGLKVTED 315
                   N   V  S  GR+ + GS    +        S       H   VT L  + D
Sbjct: 372 --------NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423

Query: 316 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
           G  L S  SD+ IRLWD+++   ++      ++  SK
Sbjct: 424 GKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASK 460

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 296 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ 355
           S      H  ++T +  + DG  LLS  SD  I+LWD+++G   + + E +   +   + 
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 356 LATTQDPAVVFVPCMTAVKAFDIW----SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411
           L++      + +   +      +W     GK   T  GH E V    FS   + L +G +
Sbjct: 117 LSSPDGN-SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175

Query: 412 -DRQILVW 418
            D  I +W
Sbjct: 176 LDGTIKLW 183

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 380 SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
           SG+   T +GH   V    FS   + L +G +D  I +W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 381 GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
           GK   T +GH   V    FS     L +G +D  + VW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           SG + +TL GH   + +V +S   ++ L +G  DG I+ WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           G + +TL GH   + +V +S      L +G  DG +R WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 301 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332
             H G VT +  + DG  L S   D  +R+WD
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 301 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332
             H G VT +  + DG YL S   D  I+LWD
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD 132
            GH   ++S  + P D  L  +GS D  V+VWD
Sbjct: 8   KGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD 132
            GH   ++S  + P D     +GS D  +K+WD
Sbjct: 9   KGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229
            +TL GH  G+  V +S   +  L TG  DG I+ WD+      R L
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTL 47

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
KOG4283	397	consensus Transcription-coupled repair protein CSA	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.83
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG0646	476	consensus WD40 repeat protein [General function pr	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
KOG1274	933	consensus WD40 repeat protein [General function pr	99.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.72
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.72
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.71
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.71
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.69
KOG4328	498	consensus WD40 protein [Function unknown]	99.67
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.65
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.64
KOG1273	405	consensus WD40 repeat protein [General function pr	99.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG2055	514	consensus WD40 repeat protein [General function pr	99.62
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG1310	758	consensus WD40 repeat protein [General function pr	99.58
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.54
KOG1963	792	consensus WD40 repeat protein [General function pr	99.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.53
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.53
PRK01742	429	tolB translocation protein TolB; Provisional	99.52
PRK11028	330	6-phosphogluconolactonase; Provisional	99.52
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.52
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.51
KOG1188	376	consensus WD40 repeat protein [General function pr	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.48
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.46
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.45
KOG0649	325	consensus WD40 repeat protein [General function pr	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.41
KOG4227	609	consensus WD40 repeat protein [General function pr	99.41
PRK03629	429	tolB translocation protein TolB; Provisional	99.4
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.39
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.39
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.39
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.39
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.38
KOG1334	559	consensus WD40 repeat protein [General function pr	99.37
PRK05137	435	tolB translocation protein TolB; Provisional	99.37
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.36
PRK04922	433	tolB translocation protein TolB; Provisional	99.36
KOG4547	541	consensus WD40 repeat-containing protein [General	99.35
PRK02889	427	tolB translocation protein TolB; Provisional	99.35
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.35
PRK04922	433	tolB translocation protein TolB; Provisional	99.34
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.33
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.32
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.32
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.31
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.28
PRK05137	435	tolB translocation protein TolB; Provisional	99.28
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.27
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.26
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.25
PRK02889	427	tolB translocation protein TolB; Provisional	99.2
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.2
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.17
KOG2139	445	consensus WD40 repeat protein [General function pr	99.16
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.13
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.12
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.11
PRK04792	448	tolB translocation protein TolB; Provisional	99.11
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.1
KOG2139	445	consensus WD40 repeat protein [General function pr	99.08
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.08
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
PRK00178	430	tolB translocation protein TolB; Provisional	99.05
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.05
KOG4547	541	consensus WD40 repeat-containing protein [General	99.04
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.02
PRK00178	430	tolB translocation protein TolB; Provisional	99.02
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.0
PRK04792	448	tolB translocation protein TolB; Provisional	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.96
PRK01029	428	tolB translocation protein TolB; Provisional	98.95
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.91
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.9
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.89
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.87
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.8
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.8
PRK01029	428	tolB translocation protein TolB; Provisional	98.8
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.77
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.73
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.72
KOG2321	703	consensus WD40 repeat protein [General function pr	98.7
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.68
KOG2315	566	consensus Predicted translation initiation factor	98.66
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.63
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.58
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.57
COG4946	668	Uncharacterized protein related to the periplasmic	98.54
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.53
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.5
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.49
KOG2315	566	consensus Predicted translation initiation factor	98.48
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.48
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.46
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.45
KOG2695	425	consensus WD40 repeat protein [General function pr	98.43
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.42
PRK04043	419	tolB translocation protein TolB; Provisional	98.39
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.31
PRK04043	419	tolB translocation protein TolB; Provisional	98.3
KOG2695	425	consensus WD40 repeat protein [General function pr	98.29
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.28
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.26
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.23
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.15
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.11
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.01
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.01
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.0
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.96
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.92
COG4946	668	Uncharacterized protein related to the periplasmic	97.88
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.85
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.84
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.79
KOG2314	698	consensus Translation initiation factor 3, subunit	97.77
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.77
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.72
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.7
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.68
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.61
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.56
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.54
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.49
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.49
KOG2314	698	consensus Translation initiation factor 3, subunit	97.48
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.39
PRK02888	635	nitrous-oxide reductase; Validated	97.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.27
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.25
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.2
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.09
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.05
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.04
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.9
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.78
KOG2444	238	consensus WD40 repeat protein [General function pr	96.77
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.72
KOG3621	726	consensus WD40 repeat-containing protein [General	96.7
KOG2395	644	consensus Protein involved in vacuole import and d	96.56
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.45
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.42
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.31
COG3391	381	Uncharacterized conserved protein [Function unknow	96.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.26
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.12
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.1
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.81
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.5
COG3391	381	Uncharacterized conserved protein [Function unknow	95.3
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.25
KOG3621	726	consensus WD40 repeat-containing protein [General	95.21
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.1
KOG2395	644	consensus Protein involved in vacuole import and d	95.08
PHA02713	557	hypothetical protein; Provisional	94.84
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.26
KOG2444	238	consensus WD40 repeat protein [General function pr	94.23
PRK02888	635	nitrous-oxide reductase; Validated	94.19
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.11
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	94.1
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.03
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.6
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.47
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.24
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.83
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.77
PHA02713	557	hypothetical protein; Provisional	92.17
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.1
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	91.82
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.15
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.15
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	90.86
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.31
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	89.88
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.87
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	89.63
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.49
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.21
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.09
PRK13616	591	lipoprotein LpqB; Provisional	88.41
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.4
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.25
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.03
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	87.95
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.77
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	87.02
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.88
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	85.87
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	85.7
PHA03098	534	kelch-like protein; Provisional	85.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	85.35
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	82.92
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	82.79
PRK13616	591	lipoprotein LpqB; Provisional	82.73
PF14727	418	PHTB1_N: PTHB1 N-terminus	82.24
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	81.96
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	81.54
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	80.61
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	80.55

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=100.00  E-value=8.4e-51  Score=347.88  Aligned_cols=360  Identities=55%  Similarity=0.960  Sum_probs=314.5

Q ss_pred             CccccccccccCcCCchhhhhhhh-ccccceecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCccc
Q 013545            1 MWKEIGGREAGQIRPNSFANRVKS-HRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY   79 (441)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~   79 (441)
                      ||+-...||.+ +++++|+++.++ .|+..|+..+-+.+..+|.+.|++|++.+..++|++||+.||.|.+||++....+
T Consensus         1 M~~fl~aRetG-~e~ns~~rR~~s~rRil~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~   79 (397)
T KOG4283|consen    1 MWSFLKARETG-QESNSFARRFKSQRRILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY   79 (397)
T ss_pred             Cchhhhhhhhc-CCCchHHHHHHhhhhhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccch
Confidence            99999999999 999999999998 6899999988788999999999999999999999999999999999999998888


Q ss_pred             CCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCC
Q 013545           80 EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS  159 (441)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (441)
                      +..+.+..+..+  +..++..+|+.+|.++.|+|.|..+|.|+|-|+++|+||.++-+..-.|++++.+++-+++|...+
T Consensus        80 e~s~li~k~~c~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~s  157 (397)
T KOG4283|consen   80 EASGLIAKHKCI--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMS  157 (397)
T ss_pred             hhccceeheeee--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhc
Confidence            777777777666  446778899999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccC
Q 013545          160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGR  238 (441)
Q Consensus       160 ~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~  238 (441)
                      +.++|+|..|-+|++.|+++|.+..++.||.+.|.+|.|+|..+++|++||.||.||+||+|.. +|+.+++.+..   +
T Consensus       158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~---k  234 (397)
T KOG4283|consen  158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT---K  234 (397)
T ss_pred             ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC---c
Confidence            8899999999999999999999999999999999999999999999999999999999999987 89998876432   1


Q ss_pred             CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE
Q 013545          239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY  318 (441)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  318 (441)
                      .+|..                                                      ..-.+|.+.|++++|+.|+.+
T Consensus       235 ~~p~~------------------------------------------------------~~n~ah~gkvngla~tSd~~~  260 (397)
T KOG4283|consen  235 RPPIL------------------------------------------------------KTNTAHYGKVNGLAWTSDARY  260 (397)
T ss_pred             cCccc------------------------------------------------------cccccccceeeeeeecccchh
Confidence            11111                                                      012478999999999999999


Q ss_pred             EEEeecCCcEEEeeCCCCCceeeeeeeEEecc--CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEE
Q 013545          319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQT--SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNC  396 (441)
Q Consensus       319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~  396 (441)
                      +++.+.|.++++|+.+++++++.++..+.-+.  ...........+..++.+..+++-++.+.++..+..+.+|-+.|.|
T Consensus       261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c  340 (397)
T KOG4283|consen  261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINC  340 (397)
T ss_pred             hhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeE
Confidence            99999999999999999987765554332111  1112222333455666777788999999999999999999999999


Q ss_pred             EEEcCCCCeEEEeecCCcEEEeCC
Q 013545          397 CCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       397 v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      .++-|+=+.+.+|+.|+.|.-|.+
T Consensus       341 ~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  341 AAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EeecCchhhhhccccCCccccccc
Confidence            999999999999999999999988

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-47  Score=338.02  Aligned_cols=356  Identities=23%  Similarity=0.368  Sum_probs=259.9

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.||.++|-|++|+| ++.+|+|||.|.|+|+||+.+.+.            .     .+-+||+.-|.|++|+| |+.
T Consensus       110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp------------~-----~t~KgH~~WVlcvawsP-Dgk  170 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETP------------L-----FTCKGHKNWVLCVAWSP-DGK  170 (480)
T ss_pred             ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCc------------c-----eeecCCccEEEEEEECC-Ccc
Confidence            3568999999999998 688999999999999999986542            1     12358999999999998 899


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEE-EEe-cCCeeEEEeeccCC--CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVM-NFK-MPGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~-~~~-~~~~~~~~~~~~~~--~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      .||||+.|++|++||.++++++. .+. +...+..+++.|..  +.-.+||+++.||.|+|||+..+.++..+.||+.+|
T Consensus       171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V  250 (480)
T KOG0271|consen  171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV  250 (480)
T ss_pred             hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence            99999999999999999988753 233 23457888888753  223489999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC--CCCC---C-cccCC
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK--PRAP---Q-KRSAN  267 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~-~~~~~  267 (441)
                      +||.|-.++  +++|||.|++||+|+...+.+.+.+..+..-+.... +...-.+..+...+..  ++..   + +....
T Consensus       251 TCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la-lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  251 TCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA-LSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             EEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeee-ccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            999997554  789999999999999999888877765321110000 0000000000000000  0000   0 00000


Q ss_pred             -CCCccccCcccccCCCCcccccC-CC-cccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeee
Q 013545          268 -GNGVRQSSVGRIPAKGSVRQRLH-PG-MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE  344 (441)
Q Consensus       268 -~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~  344 (441)
                       ......++...+..+.++...+. +. .-....+..+|...|+.+.||||+++|||+|-|+.|++||..+++..    .
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l----a  403 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL----A  403 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh----h
Confidence             00000000001111111111111 11 11123356899999999999999999999999999999999998742    3


Q ss_pred             eEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          345 TVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      +++.+.....+++.+.|.+++++++. .++++|++.+.++...|.||.++|.++.|+|||+.+++|+.|+.+|+|.
T Consensus       404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            44555667788999999999988765 6899999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.7e-45  Score=326.02  Aligned_cols=283  Identities=22%  Similarity=0.363  Sum_probs=247.2

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-CCCEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLF  119 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~l  119 (441)
                      |-+.+|..+.|++ +++.|||||.+|.+++|+......                 .+.++||+..|.++.|+|. ++..+
T Consensus       173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~-----------------~~~l~gH~~~v~~~~fhP~~~~~~l  234 (459)
T KOG0272|consen  173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNL-----------------LQTLRGHTSRVGAAVFHPVDSDLNL  234 (459)
T ss_pred             cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcce-----------------eEEEeccccceeeEEEccCCCccce
Confidence            5568999999995 688999999999999999865421                 1345799999999999998 36789


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      |||+.||++++|++.+..++..+..+ ..+..+.|+|.+   .+|++++.|.+-++||++++..+....||...|.+++|
T Consensus       235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG---~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf  311 (459)
T KOG0272|consen  235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG---KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF  311 (459)
T ss_pred             eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC---ceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence            99999999999999988888777643 457788888864   58999999999999999999988888999999999999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  278 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (441)
                      .|||. +++|||.|..-||||+|++.|+-.|                                                 
T Consensus       312 ~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L-------------------------------------------------  341 (459)
T KOG0272|consen  312 QPDGS-LAATGGLDSLGRVWDLRTGRCIMFL-------------------------------------------------  341 (459)
T ss_pred             cCCCc-eeeccCccchhheeecccCcEEEEe-------------------------------------------------
Confidence            99997 7899999999999999999876554                                                 


Q ss_pred             ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545          279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (441)
                                            .+|..+|.+|+|||+|..|||||.|++++|||++..+.    ..++..+.+....+.+
T Consensus       342 ----------------------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~  395 (459)
T KOG0272|consen  342 ----------------------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKY  395 (459)
T ss_pred             ----------------------cccccceeeEeECCCceEEeecCCCCcEEEeeeccccc----ceecccccchhhheEe
Confidence                                  35888999999999999999999999999999997653    4566667777778888


Q ss_pred             eC-CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          359 TQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       359 ~~-~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      .| .|.++++++. .++++|.-.++.++++|.||++.|.+|..+||+++++|+|.|++||+|.+
T Consensus       396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  396 SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence            87 5666666654 68999999999999999999999999999999999999999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.9e-42  Score=296.47  Aligned_cols=288  Identities=18%  Similarity=0.361  Sum_probs=236.4

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      .++++.||.+.|+++.|++ +.++|+|+|.||.+.|||..+..+.    +.-.             -...-|-.++|+| 
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~----haip-------------l~s~WVMtCA~sP-  107 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKV----HAIP-------------LPSSWVMTCAYSP-  107 (343)
T ss_pred             eEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccce----eEEe-------------cCceeEEEEEECC-
Confidence            3678999999999999995 6889999999999999998654321    1111             2334566788887 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCC--e----EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCT--R----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~--~----~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      .++++|.||.|....||++.+.  +    +...+. +.+.+.++.|..+    ..|++++.|.++.+||+++++.++.|.
T Consensus       108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD----~~ilT~SGD~TCalWDie~g~~~~~f~  183 (343)
T KOG0286|consen  108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD----NHILTGSGDMTCALWDIETGQQTQVFH  183 (343)
T ss_pred             CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC----CceEecCCCceEEEEEcccceEEEEec
Confidence            6899999999999999999855  2    222232 2344555555542    357788999999999999999999999


Q ss_pred             CCCCCeEEEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          188 GHRDGIMTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       188 ~h~~~v~~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      ||.+.|.+++++| +++ .|+||+.|++.++||+|.+.|.+.|                                     
T Consensus       184 GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~~c~qtF-------------------------------------  225 (343)
T KOG0286|consen  184 GHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSGQCVQTF-------------------------------------  225 (343)
T ss_pred             CCcccEEEEecCCCCCC-eEEecccccceeeeeccCcceeEee-------------------------------------
Confidence            9999999999999 555 6899999999999999988776554                                     


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  346 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~  346 (441)
                                                        .+|.+.|++|+|.|+|..++|||.|+++|+||++..+.. ..|. .
T Consensus       226 ----------------------------------~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys-~  269 (343)
T KOG0286|consen  226 ----------------------------------EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYS-H  269 (343)
T ss_pred             ----------------------------------cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeec-c
Confidence                                              368888999999999999999999999999999987632 2222 1


Q ss_pred             EeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          347 RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      .....+...++++.+|++++.+.. .++.+||.-.++....|.||++.|+|+..+|||.-|+|||+|.++|||.
T Consensus       270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            222344567899999999998644 7999999999999999999999999999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-39  Score=275.61  Aligned_cols=295  Identities=20%  Similarity=0.329  Sum_probs=233.2

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ....+.+|++.|+.++..+.+.+.|++++.|.++.+|++...... - +.          ..+-+.||...|..+..++ 
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-~-G~----------~~r~~~GHsH~v~dv~~s~-   73 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-Y-GV----------PVRRLTGHSHFVSDVVLSS-   73 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-c-Cc----------eeeeeeccceEecceEEcc-
Confidence            356688999999999998776788999999999999999754210 0 00          1123458999999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC-CCCC
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-HRDG  192 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~-h~~~  192 (441)
                      |+++++|+|+|+++|+||+++++..+.|..+ ..+.+++++++.   ..+++|+-|.+|++||+..........+ |.+.
T Consensus        74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn---~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W  150 (315)
T KOG0279|consen   74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN---RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW  150 (315)
T ss_pred             CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC---ceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence            8999999999999999999999888877654 458889999864   4799999999999999976644333333 4899


Q ss_pred             eEEEEEecCC-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          193 IMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       193 v~~v~fsp~~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      |.|+.|+|+. +.+++++|+|++||+||+++.+..                                             
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~---------------------------------------------  185 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR---------------------------------------------  185 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh---------------------------------------------
Confidence            9999999983 347899999999999999853211                                             


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                                ..+.+|.+.++.+++||||...++|+.||.+.+||+..++..    ..+. ...
T Consensus       186 --------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l----ysl~-a~~  234 (315)
T KOG0279|consen  186 --------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL----YSLE-AFD  234 (315)
T ss_pred             --------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee----Eecc-CCC
Confidence                                      113578899999999999999999999999999999988752    1111 123


Q ss_pred             cceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeec----cc-----ccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR----GH-----YEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~----gh-----~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ....++|+|....+..+....++|||..++.++.+|+    |.     .-...+++||+||+.|++|-.|+.||+|.+.
T Consensus       235 ~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  235 IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            3456788888777766777889999999988776543    22     2235779999999999999999999999764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-38  Score=277.70  Aligned_cols=294  Identities=24%  Similarity=0.340  Sum_probs=222.6

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      ...||..+|.|+.|+| ++.+|+|||.|.|+|+||+.+..+..+.+.+ .-+.+++++|++.   .||+|+.||+|++||
T Consensus       110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk---~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK---KIASGSKDGSIRLWD  185 (480)
T ss_pred             ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc---hhhccccCCeEEEec
Confidence            3469999999999998 8999999999999999999999988877644 4488999999764   799999999999999


Q ss_pred             CCCCcee-eeecCCCCCeEEEEEecC-----CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          177 IASGAIS-QTLSGHRDGIMTVEWSTS-----SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       177 l~~~~~~-~~l~~h~~~v~~v~fsp~-----~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      .++|+.+ ..|+||...|++++|.|-     .+ +|||+|.||+|+|||+..+.|+..+..+...+-      +...  +
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT------Cvrw--G  256 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT------CVRW--G  256 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceE------EEEE--c
Confidence            9999764 689999999999999863     34 689999999999999999888887765443220      0000  0


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc-----------cCC---
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-----------EDG---  316 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-----------~dg---  316 (441)
                      +..               .....+.+..+......+     +..  -..+.+|...|+.|+++           |.+   
T Consensus       257 G~g---------------liySgS~DrtIkvw~a~d-----G~~--~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~  314 (480)
T KOG0271|consen  257 GEG---------------LIYSGSQDRTIKVWRALD-----GKL--CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP  314 (480)
T ss_pred             CCc---------------eEEecCCCceEEEEEccc-----hhH--HHhhcccchheeeeeccchhhhhccccccccccC
Confidence            000               000001111111000000     000  01245666667766666           223   


Q ss_pred             ----------------------CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-Cce
Q 013545          317 ----------------------MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAV  373 (441)
Q Consensus       317 ----------------------~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  373 (441)
                                            ..|+||+.|.++.+|+....+..   ...+..++...+.+.++||+.++++++. ..|
T Consensus       315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV  391 (480)
T KOG0271|consen  315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---ITRMTGHQALVNHVSFSPDGRYIASASFDKSV  391 (480)
T ss_pred             CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc---hhhhhchhhheeeEEECCCccEEEEeecccce
Confidence                                  35999999999999998754421   2223345667788999999999999877 689


Q ss_pred             EEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          374 KAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       374 ~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      |+|+..+|+-+.+|+||-+.|..|+||.|.++|+|||.|.|+++|++.+.++..=+
T Consensus       392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL  447 (480)
T ss_pred             eeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence            99999999999999999999999999999999999999999999999988866433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.1e-37  Score=262.85  Aligned_cols=290  Identities=21%  Similarity=0.364  Sum_probs=234.4

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      +.+.+.+|.++|+.+.|+| ++.+||||+.|..|.+|++....+           +..     ..+||+++|..+.+.+ 
T Consensus        39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~-----~lkgHsgAVM~l~~~~-  100 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCE-----------NFW-----VLKGHSGAVMELHGMR-  100 (338)
T ss_pred             hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEecccccc-----------cee-----eeccccceeEeeeecc-
Confidence            4567789999999999998 688999999999999999864321           111     2348999999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      |+..++|+|.|++|+.||+++|+++..++.+.. +..+.  |...+..++.+++.|+++++||+++...++++. ..-.+
T Consensus       101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyql  177 (338)
T KOG0265|consen  101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQL  177 (338)
T ss_pred             CCCEEEEecCCceEEEEecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc-cceeE
Confidence            788999999999999999999999988876544 33333  555567899999999999999999888887774 35678


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      +++.|...+.. ..||+-|+.|++||+|.+.+..+                                             
T Consensus       178 tAv~f~d~s~q-v~sggIdn~ikvWd~r~~d~~~~---------------------------------------------  211 (338)
T KOG0265|consen  178 TAVGFKDTSDQ-VISGGIDNDIKVWDLRKNDGLYT---------------------------------------------  211 (338)
T ss_pred             EEEEecccccc-eeeccccCceeeeccccCcceEE---------------------------------------------
Confidence            99999988875 57999999999999987654333                                             


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC---ceeeeeeeE-Eec
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR---NTLVNFETV-RLQ  349 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~---~~~~~~~~~-~~~  349 (441)
                                                ..+|.++|+.|..+|+|.++.+-+-|.++++||++.-.   .....+... ...
T Consensus       212 --------------------------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf  265 (338)
T KOG0265|consen  212 --------------------------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF  265 (338)
T ss_pred             --------------------------eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence                                      35788999999999999999999999999999987532   111112111 111


Q ss_pred             cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEE
Q 013545          350 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV  417 (441)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~v  417 (441)
                      ......++++|+++.+-.+.. ..+.+||......+..|.||.+.|+++.|+|....|.+++.|++|.+
T Consensus       266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            122345678888887766544 68999999999999999999999999999999999999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-35  Score=272.20  Aligned_cols=366  Identities=17%  Similarity=0.232  Sum_probs=251.7

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      |+..+.-|..-|+|+.|+|+ |.+++|++.||+|.|||-.+++..            -.+  ....+|++.|.++.|+| 
T Consensus       182 Fk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~v------------g~l--~~~~aHkGsIfalsWsP-  245 (603)
T KOG0318|consen  182 FKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKV------------GEL--EDSDAHKGSIFALSWSP-  245 (603)
T ss_pred             eeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEE------------EEe--cCCCCccccEEEEEECC-
Confidence            45556679999999999975 778999999999999999887642            111  12458999999999998 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      |+.+|+|+|.|.++||||+.+.+++.++.+...+........+.. ..|++-+.+|.|.+++...+..++++.||...|+
T Consensus       246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk-d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT  324 (603)
T KOG0318|consen  246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK-DHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT  324 (603)
T ss_pred             CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC-CeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence            899999999999999999999999999998877544444444442 3567778899999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec-cCCccccCC-----CCcccccccccCccCCcCCCCC-----Cc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD-QSQSQLGRR-----PPLLKRKSLSAGQNSSVKPRAP-----QK  263 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~  263 (441)
                      +++.+|++++ |.||+-||.|.-||..++.+.+... .+...+...     ...........-..........     .+
T Consensus       325 aLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~  403 (603)
T KOG0318|consen  325 ALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK  403 (603)
T ss_pred             EEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee
Confidence            9999999975 6899999999999999887655431 111111000     0001000000000000000000     00


Q ss_pred             ccCCCCCccccCccccc---CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545          264 RSANGNGVRQSSVGRIP---AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                      ...-..+++..+++.+.   +...+...-.......    ..-.-...+++++|++.+++.|+.|+.|++|.++..... 
T Consensus       404 lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~-  478 (603)
T KOG0318|consen  404 LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK-  478 (603)
T ss_pred             cCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee----eccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-
Confidence            00000122222322111   0011100000000000    000113678999999999999999999999999875431 


Q ss_pred             eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                       .......+...+..++++||+.+++++-. ..+-+||+.+.+.....-+ |+..|+||+|||+++++||||-|.+|.||
T Consensus       479 -ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  479 -EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             -ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence             11122334566777899999999887644 6899999988887544434 99999999999999999999999999999


Q ss_pred             CCCCCC
Q 013545          419 CPSRHI  424 (441)
Q Consensus       419 ~~~~~~  424 (441)
                      ++..+-
T Consensus       558 sv~kP~  563 (603)
T KOG0318|consen  558 SVKKPA  563 (603)
T ss_pred             EccChh
Confidence            988654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-36  Score=271.44  Aligned_cols=255  Identities=22%  Similarity=0.327  Sum_probs=222.1

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~  179 (441)
                      |-+.+|..+.|+. +++.|||||++|.+++|...+...+.++.. .+.+..+.|+|.. +...+|+|+.||.+++|++.+
T Consensus       173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCC
Confidence            5667787777665 899999999999999999998888777764 5678888999974 345799999999999999999


Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                      ..+++.+.||...|..|+|+|+|++ |+|++-|.+-|+||+++...+                                 
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~El---------------------------------  296 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSEL---------------------------------  296 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhh---------------------------------
Confidence            9999999999999999999999984 799999999999999864210                                 


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  339 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~  339 (441)
                                                            -...+|...|.+++|.|||..++|||-|..-||||+++++..
T Consensus       297 --------------------------------------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i  338 (459)
T KOG0272|consen  297 --------------------------------------LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI  338 (459)
T ss_pred             --------------------------------------HhhcccccccceeEecCCCceeeccCccchhheeecccCcEE
Confidence                                                  002478889999999999999999999999999999999864


Q ss_pred             eeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcC-CCCeEEEeecCCcEEE
Q 013545          340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILV  417 (441)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~~i~v  417 (441)
                      +    .+..+...+..++++|+|..+++++. .++|+||+...+++.++.+|.+.|+.|.|+| .|.+|+|||.|++++|
T Consensus       339 m----~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki  414 (459)
T KOG0272|consen  339 M----FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI  414 (459)
T ss_pred             E----EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceee
Confidence            3    22335677788999999999998866 6899999999999999999999999999999 6888999999999999


Q ss_pred             eCCCCCCCCCccCCcc
Q 013545          418 WCPSRHISDGVDAGPM  433 (441)
Q Consensus       418 W~~~~~~~~~~~~~~~  433 (441)
                      |...+....+.++|-.
T Consensus       415 Ws~~~~~~~ksLaGHe  430 (459)
T KOG0272|consen  415 WSTRTWSPLKSLAGHE  430 (459)
T ss_pred             ecCCCcccchhhcCCc
Confidence            9999999888888853

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.2e-36  Score=292.33  Aligned_cols=261  Identities=23%  Similarity=0.434  Sum_probs=214.8

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCc--ccCCCCceeccc------eeEEe------ecccccCcccceeEE
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHIAKHR------SVFVV------DKQHEHGHKYAISSA  109 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~------~~~~~------~~~~~~~h~~~V~~~  109 (441)
                      ..|+|..|+ +++..||.|-.|..|++|.+...+  .......+....      .+-..      ......||.++|..+
T Consensus       379 ~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  379 QGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CcceeEeec-CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            579999999 567799999999999999986321  111100000000      00000      012356999999999


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545          110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (441)
Q Consensus       110 ~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~  188 (441)
                      .|+| +..+|+|||.|+++|+|.+.+..++-.++. ..++..+.|+|.+   .++|+++.|.+.++|......+++.+.|
T Consensus       458 sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G---yYFatas~D~tArLWs~d~~~PlRifag  533 (707)
T KOG0263|consen  458 SFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG---YYFATASHDQTARLWSTDHNKPLRIFAG  533 (707)
T ss_pred             eecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc---eEEEecCCCceeeeeecccCCchhhhcc
Confidence            9998 678999999999999999999998877764 4568888888864   6999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      |.+.|.|+.|+|+..+ +++||.|.+||+||+.++.+++.|                                       
T Consensus       534 hlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF---------------------------------------  573 (707)
T KOG0263|consen  534 HLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIF---------------------------------------  573 (707)
T ss_pred             cccccceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEe---------------------------------------
Confidence            9999999999999885 699999999999999987665543                                       


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  348 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~  348 (441)
                                                      .||.++|.+|+|||+|++|++|+.|+.|++||+.+++           
T Consensus       574 --------------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-----------  610 (707)
T KOG0263|consen  574 --------------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS-----------  610 (707)
T ss_pred             --------------------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-----------
Confidence                                            4789999999999999999999999999999998654           


Q ss_pred             ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                                                        .+..+.+|++-|.++.||.||..||+||.|.+|++||.....-.
T Consensus       611 ----------------------------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  611 ----------------------------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             ----------------------------------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence                                              23566889999999999999999999999999999998755533

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.6e-35  Score=245.78  Aligned_cols=283  Identities=19%  Similarity=0.261  Sum_probs=224.4

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 013545           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~  134 (441)
                      .-+|+|+|.|-|||+|...++.++..                 . .|. ..|+.+...| ++..||+++.- .||+||++
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rT-----------------i-qh~dsqVNrLeiTp-dk~~LAaa~~q-hvRlyD~~   69 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRT-----------------I-QHPDSQVNRLEITP-DKKDLAAAGNQ-HVRLYDLN   69 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEE-----------------E-ecCccceeeEEEcC-CcchhhhccCC-eeEEEEcc
Confidence            35899999999999999998876421                 0 122 3477888877 67788887764 79999998


Q ss_pred             CCe--EEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeec
Q 013545          135 CTR--VVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC  211 (441)
Q Consensus       135 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~  211 (441)
                      ++.  ++.++..+ ..+..+.|..++   ..+++|+.||+++|||++...+.+.+ .|.++|.+|..+|+.. -|++|..
T Consensus        70 S~np~Pv~t~e~h~kNVtaVgF~~dg---rWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQt-eLis~dq  144 (311)
T KOG0315|consen   70 SNNPNPVATFEGHTKNVTAVGFQCDG---RWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQT-ELISGDQ  144 (311)
T ss_pred             CCCCCceeEEeccCCceEEEEEeecC---eEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcc-eEEeecC
Confidence            866  46777654 568888888764   58999999999999999986665555 4779999999999865 4789999


Q ss_pred             CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545          212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP  291 (441)
Q Consensus       212 Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (441)
                      +|.|++||++...|.+.+-.                                                            
T Consensus       145 sg~irvWDl~~~~c~~~liP------------------------------------------------------------  164 (311)
T KOG0315|consen  145 SGNIRVWDLGENSCTHELIP------------------------------------------------------------  164 (311)
T ss_pred             CCcEEEEEccCCccccccCC------------------------------------------------------------
Confidence            99999999987544332210                                                            


Q ss_pred             CcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc--eeeeeeeEEeccCcceEEEeeCCCcEEEEeC
Q 013545          292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN--TLVNFETVRLQTSKPIQLATTQDPAVVFVPC  369 (441)
Q Consensus       292 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (441)
                                .-..+|.++.+.|||.+|+++..-|++++|++-+...  .+...+.+..+..-..++.++||.+++++.+
T Consensus       165 ----------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s  234 (311)
T KOG0315|consen  165 ----------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS  234 (311)
T ss_pred             ----------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence                      0113588999999999999999999999999876432  2333444555667778889999999998875


Q ss_pred             C-CceEEEEccCC-ceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCCcc
Q 013545          370 M-TAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPM  433 (441)
Q Consensus       370 ~-~~~~~wd~~~~-~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~~~  433 (441)
                      . .++++|+..+- ++-..+.||..++|+++||.||++|+|||.|+++|+|+++.++-...-.|..
T Consensus       235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence            5 69999999887 6777899999999999999999999999999999999999888554444443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.3e-34  Score=253.80  Aligned_cols=335  Identities=17%  Similarity=0.245  Sum_probs=238.9

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+..|+.+|++++.+| +.++++||+.|....||+..++...                 ....||+..|+++.|+. ++.
T Consensus        59 tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~Fsh-dgt  119 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSFSH-DGT  119 (399)
T ss_pred             ehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEEcc-Cce
Confidence            4568999999999998 6789999999999999999877521                 12348999999999987 799


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      +||||+.+|.|+||+..++.....+-. -+.+..+.++|.   ..+|++|+.||.+.+|.+..+...+.+.||..++++-
T Consensus       120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~---a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G  196 (399)
T KOG0296|consen  120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR---AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG  196 (399)
T ss_pred             EEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc---ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence            999999999999999999887665542 233556667763   4589999999999999999988889999999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      .|.|+|++ ++++..||+|++||+.++..+..+......   ..+...   .+  .....    ...-...+ .+.....
T Consensus       197 ~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~---~~~~~~---~~--~~~~~----~~~g~~e~-~~~~~~~  262 (399)
T KOG0296|consen  197 EFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAEGL---ELPCIS---LN--LAGST----LTKGNSEG-VACGVNN  262 (399)
T ss_pred             cccCCCce-EEEEecCceEEEEecCCCceeEEecccccC---cCCccc---cc--cccce----eEeccCCc-cEEEEcc
Confidence            99999995 689999999999999988766554422210   000000   00  00000    00000000 0000000


Q ss_pred             ccccCCCCcccccCCCcccccccceeec---cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHY---GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                          ..+.+.....+..   ......+.   ..|-++.++.+=.+.|+|+-||+|.|||+.+.+.+.     +-.+....
T Consensus       263 ----~sgKVv~~~n~~~---~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-----~c~he~~V  330 (399)
T KOG0296|consen  263 ----GSGKVVNCNNGTV---PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH-----ICEHEDGV  330 (399)
T ss_pred             ----ccceEEEecCCCC---ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe-----eccCCCce
Confidence                0011111111000   00011222   235555566666788999999999999998765332     12234556


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      +.+.+-+ ..+++++|. +.++.||..+|+++.++.||..+|.+++++|+.++++|+|.|++.+|+..+
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            7777777 455666655 789999999999999999999999999999999999999999999999865

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.4e-35  Score=268.66  Aligned_cols=297  Identities=19%  Similarity=0.290  Sum_probs=245.0

Q ss_pred             cccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545           32 LSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (441)
Q Consensus        32 ~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  111 (441)
                      ++.....+.||+..|+++.|.|..+.+|+|++.|+.|+|||+......                .++..||..+|.++.|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~----------------lrtf~gH~k~Vrd~~~  266 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC----------------LRTFKGHRKPVRDASF  266 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce----------------ehhhhcchhhhhhhhc
Confidence            344455678999999999999877889999999999999998652210                1456699999999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545          112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (441)
Q Consensus       112 ~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~  191 (441)
                      +. ++..|+|+|.|++|++||+++|+++..+.......++.++|+.  .+++++|+.|+.|+.||+++++.++.+..|.+
T Consensus       267 s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg  343 (503)
T KOG0282|consen  267 NN-CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG  343 (503)
T ss_pred             cc-cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence            86 7889999999999999999999999999988888999999976  46888999999999999999999999999999


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      .|..+.|-+++++ ++|++.|++++||+.+.+-.+...                                          
T Consensus       344 ~i~~i~F~~~g~r-FissSDdks~riWe~~~~v~ik~i------------------------------------------  380 (503)
T KOG0282|consen  344 AILDITFVDEGRR-FISSSDDKSVRIWENRIPVPIKNI------------------------------------------  380 (503)
T ss_pred             heeeeEEccCCce-EeeeccCccEEEEEcCCCccchhh------------------------------------------
Confidence            9999999999985 789999999999998753211100                                          


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce--eeeeeeEEec
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT--LVNFETVRLQ  349 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~--~~~~~~~~~~  349 (441)
                                                .....|  ...+|..+|++.++++=+-|..|.++.+...-..  ...|+. ...
T Consensus       381 --------------------------~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~v  431 (503)
T KOG0282|consen  381 --------------------------ADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSV  431 (503)
T ss_pred             --------------------------cchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eec
Confidence                                      000122  2457899999999999999999999986532110  011211 223


Q ss_pred             cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeC
Q 013545          350 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWC  419 (441)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~  419 (441)
                      .+-.+.+.++|||.+++++.. +.+..||-.+-+++..+.+|.+++..+.|+|.. ..+||||+||.|++|+
T Consensus       432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            566789999999999999855 789999999999999999999999999999975 4588999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.6e-34  Score=253.93  Aligned_cols=290  Identities=21%  Similarity=0.352  Sum_probs=229.1

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      +..++.||.+.|.|+++.|. +.+++|||.|++|+|||+.++...                 .+..||...|..+++++ 
T Consensus       143 l~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~Lk-----------------ltltGhi~~vr~vavS~-  203 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLK-----------------LTLTGHIETVRGVAVSK-  203 (460)
T ss_pred             ehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEE-----------------Eeecchhheeeeeeecc-
Confidence            35678899999999999974 679999999999999999887421                 23458988999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      ...++++++.|+.|+.||++..+.++.+.. -..++++..+|.   ..+|++|+.|..++|||+++...+.++.||..+|
T Consensus       204 rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT---ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V  280 (460)
T KOG0285|consen  204 RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT---LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV  280 (460)
T ss_pred             cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc---ceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence            567999999999999999999888876543 356888888874   3489999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      ..|.+.|-++. ++|||.|++||+||++.++...+                                             
T Consensus       281 ~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~~t---------------------------------------------  314 (460)
T KOG0285|consen  281 ASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTMIT---------------------------------------------  314 (460)
T ss_pred             eeEEeecCCCc-eEEecCCceEEEeeeccCceeEe---------------------------------------------
Confidence            99999987775 68999999999999987654332                                             


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                ...|...|++++.+|.-..+||++.|. |+-|++..+....    .+..+....
T Consensus       315 --------------------------lt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~----nlsgh~~ii  363 (460)
T KOG0285|consen  315 --------------------------LTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQ----NLSGHNAII  363 (460)
T ss_pred             --------------------------eecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhh----cccccccee
Confidence                                      234677899999999999999999996 9999998765321    112222333


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc--------cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG--------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g--------h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      ..++...| .++++++. +.+-.||-.+|-....+..        -+..|.+.+|...|..|+||..|.+|++|.-+.+.
T Consensus       364 ntl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a  442 (460)
T KOG0285|consen  364 NTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA  442 (460)
T ss_pred             eeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence            44454444 45556555 5778899887754443311        13458999999999999999999999999765443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=243.39  Aligned_cols=227  Identities=22%  Similarity=0.423  Sum_probs=187.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeeecCCCCCe
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHRDGI  193 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l~~h~~~v  193 (441)
                      -+|+|+|+|.|||+|...+|.+..+++++ +.+.++.++|+..   .||+++ .-.|++||+++++  ++.++.+|+..|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~---~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK---DLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc---hhhhcc-CCeeEEEEccCCCCCceeEEeccCCce
Confidence            37899999999999999999999999985 6799999999753   466554 4679999999875  578999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      ++|.|.-+|++ ++|||+||++||||+|...|.+.                                             
T Consensus        87 taVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~---------------------------------------------  120 (311)
T KOG0315|consen   87 TAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRN---------------------------------------------  120 (311)
T ss_pred             EEEEEeecCeE-EEecCCCceEEEEeccCcccchh---------------------------------------------
Confidence            99999999987 79999999999999997443222                                             


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                 ..|..+|++|..+|+...|++|..+|.|++||+......-   ..+.......
T Consensus       121 ---------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~---~liPe~~~~i  170 (311)
T KOG0315|consen  121 ---------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH---ELIPEDDTSI  170 (311)
T ss_pred             ---------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc---ccCCCCCcce
Confidence                                       1355789999999999999999999999999998653111   1111122334


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCC------ceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSG------KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~------~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      ..+...+||.+++.+.. +++.+|++-++      +++..|+.|.+.+..+.+|||+++|||+|+|.+++||+.++-
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            56788899998887765 78999998664      345679999999999999999999999999999999999876

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.4e-36  Score=263.21  Aligned_cols=323  Identities=16%  Similarity=0.237  Sum_probs=242.1

Q ss_pred             CCchhhhhhhhccccceecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEE
Q 013545           14 RPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV   93 (441)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   93 (441)
                      ++++|.+|+++.+|..+..+.|-.-+.||...|.||+-+|..-..++|||.||.|+|||+....+.              
T Consensus        37 ~~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--------------  102 (433)
T KOG0268|consen   37 RAREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--------------  102 (433)
T ss_pred             hHHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------------
Confidence            568999999999999999888877779999999999999754356999999999999999765431              


Q ss_pred             eecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545           94 VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus        94 ~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                         ..+.+|.+-|..+++..   ..++|+|+|++|+.|.+.. .++.++-..+.+..+..+.   ....+|+++.  .|.
T Consensus       103 ---~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~---~~~~FaTcGe--~i~  170 (433)
T KOG0268|consen  103 ---RTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHR---KNSVFATCGE--QID  170 (433)
T ss_pred             ---heeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeecccccccccccc---ccccccccCc--eee
Confidence               23458999999888854   6799999999999998764 3566665555444443322   2346777764  699


Q ss_pred             EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEe--ccCCccccCCCCcccccccccC
Q 013545          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL--DQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       174 vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      |||.+...++..+.--.+.+.++.|+|.-..+|++|++|++|.+||+|.+..+..+  ....+                 
T Consensus       171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-----------------  233 (433)
T KOG0268|consen  171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-----------------  233 (433)
T ss_pred             ecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-----------------
Confidence            99999999999999888999999999998889999999999999999987654321  11111                 


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccC----CCcccccccceeeccCeEEEEEccCCCEEEEeecCCc
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH----PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  327 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  327 (441)
                                        .++..|.+-....++.+..++    ..+........+|.+.|++|+|||.|+.++|||.|++
T Consensus       234 ------------------~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks  295 (433)
T KOG0268|consen  234 ------------------TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS  295 (433)
T ss_pred             ------------------ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce
Confidence                              111111111111111111110    1111122335678899999999999999999999999


Q ss_pred             EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEE
Q 013545          328 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  407 (441)
Q Consensus       328 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~  407 (441)
                      ||||....+...- .+++.++                                           ..|.||.||.|.++++
T Consensus       296 IRIf~~~~~~SRd-iYhtkRM-------------------------------------------q~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  296 IRIFPVNHGHSRD-IYHTKRM-------------------------------------------QHVFCVKYSMDSKYII  331 (433)
T ss_pred             EEEeecCCCcchh-hhhHhhh-------------------------------------------heeeEEEEeccccEEE
Confidence            9999988664321 1222222                                           2399999999999999


Q ss_pred             EeecCCcEEEeCCCCCCCCCccCCccCCcCCCCC
Q 013545          408 TGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD  441 (441)
Q Consensus       408 s~s~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~  441 (441)
                      |||+|+.||+|........|++.-++++.++|++
T Consensus       332 SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e  365 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAKASEKLGVITPREKNKLEYNE  365 (433)
T ss_pred             ecCCCcceeeeecchhhhcCCCChhHHHHHHHHH
Confidence            9999999999999999999999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.6e-33  Score=264.57  Aligned_cols=307  Identities=20%  Similarity=0.293  Sum_probs=239.9

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCc--c------cC--------CCCceeccceeEEeecc-c
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--D------YE--------GGGHIAKHRSVFVVDKQ-H   98 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~------~~--------~~~~~~~~~~~~~~~~~-~   98 (441)
                      ...+.||.+.|-++.|.. +..-+.|-|.||.+.+|-+...-  .      ++        ..+....++-.+..... .
T Consensus       182 ~~~l~gHkd~VvacfF~~-~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~  260 (893)
T KOG0291|consen  182 TYALNGHKDYVVACFFGA-NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY  260 (893)
T ss_pred             eEeccCCCcceEEEEecc-CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence            345779999999999984 56679999999999999765110  0      00        00000112222222212 1


Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeC-CCcEEEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTE-DVQVRLCD  176 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~-d~~I~vwd  176 (441)
                      .......|+++.|++ ...+||+|-..|...++++-...+++.+.+. .++..+.+...+   ..||.|+. =|++-||+
T Consensus       261 ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG---DWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG---DWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             ecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC---CEEEEcCCccceEEEEE
Confidence            222336688888876 5779999999999999999999999988876 556666666533   36776664 47999999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      .++..++...+||...+.+++++|||+ ++|+|+.||.||+||++++-|+.++                           
T Consensus       337 WqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTF---------------------------  388 (893)
T KOG0291|consen  337 WQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTF---------------------------  388 (893)
T ss_pred             eeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEe---------------------------
Confidence            999999999999999999999999998 5799999999999999998887765                           


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                                  ..|...|+.+.|+..|+.|+|.|-||+||.||+...
T Consensus       389 --------------------------------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  389 --------------------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             --------------------------------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence                                                        247778999999999999999999999999999987


Q ss_pred             CceeeeeeeEEecc-CcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          337 RNTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       337 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      ++    |.+..... -.-.+++..|.|.++..++.  ..+.+|++.+|+++..|+||++||.+++|+|++..|+|+|+|.
T Consensus       425 rN----fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  425 RN----FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             ce----eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence            64    33322111 12234667788888877766  4799999999999999999999999999999999999999999


Q ss_pred             cEEEeCCCCC
Q 013545          414 QILVWCPSRH  423 (441)
Q Consensus       414 ~i~vW~~~~~  423 (441)
                      |||+|++-..
T Consensus       501 TVRiW~if~s  510 (893)
T KOG0291|consen  501 TVRIWDIFSS  510 (893)
T ss_pred             eEEEEEeecc
Confidence            9999998655

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-34  Score=241.12  Aligned_cols=288  Identities=20%  Similarity=0.276  Sum_probs=224.6

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.||..+++-+.|+. +|++|.|++.|.++.+|-...++.+                 .+..||+++|+|+.+.. +..
T Consensus         5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerl-----------------Gty~GHtGavW~~Did~-~s~   65 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERL-----------------GTYDGHTGAVWCCDIDW-DSK   65 (327)
T ss_pred             ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCcee-----------------eeecCCCceEEEEEecC-Ccc
Confidence            4679999999999984 7889999999999999976555432                 23459999999999865 578


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC-----CCcEEEEECC-------CCceeee
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE-----DVQVRLCDIA-------SGAISQT  185 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~-----d~~I~vwdl~-------~~~~~~~  185 (441)
                      +++||+.|.++++||+++|+++.+++.+..+..+.|++.+   ++++....     .+.|.++|++       ..++...
T Consensus        66 ~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   66 HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            9999999999999999999999999999999999998864   34443332     3469999997       3456777


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      +..+.+.++.+-|.|-++. +++|..||.|.+||++++..+..                                     
T Consensus       143 I~t~~skit~a~Wg~l~~~-ii~Ghe~G~is~~da~~g~~~v~-------------------------------------  184 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGET-IIAGHEDGSISIYDARTGKELVD-------------------------------------  184 (327)
T ss_pred             ecCCccceeeeeecccCCE-EEEecCCCcEEEEEcccCceeee-------------------------------------
Confidence            8888899999999999985 68999999999999997632110                                     


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  345 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~  345 (441)
                                                       ....|...|+.|+++||..+++++|.|.+.++||..+-.. ++.+.+
T Consensus       185 ---------------------------------s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-~Kty~t  230 (327)
T KOG0643|consen  185 ---------------------------------SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-LKTYTT  230 (327)
T ss_pred             ---------------------------------chhhhccccccccccCCcceEEecccCccceeeeccceee-EEEeee
Confidence                                             0124667899999999999999999999999999987542 122221


Q ss_pred             EEeccCcceEEEeeCCCcEEEEeCCCceE---------------EEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545          346 VRLQTSKPIQLATTQDPAVVFVPCMTAVK---------------AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s  410 (441)
                          ..+..+.+++|-...++.+++...+               .+++--.+....++||.+||++|+|+|||+..+||+
T Consensus       231 ----e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG  306 (327)
T KOG0643|consen  231 ----ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG  306 (327)
T ss_pred             ----cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence                1234456777777777766553222               222222334557899999999999999999999999


Q ss_pred             cCCcEEEeCCCCC
Q 013545          411 NDRQILVWCPSRH  423 (441)
Q Consensus       411 ~D~~i~vW~~~~~  423 (441)
                      +||.||+.-.+..
T Consensus       307 EDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  307 EDGYVRLHHFDSN  319 (327)
T ss_pred             CCceEEEEEeccc
Confidence            9999999865443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.7e-35  Score=260.01  Aligned_cols=280  Identities=18%  Similarity=0.329  Sum_probs=223.5

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      -.|+.+.|.| +|+.|++|+..|...+|+......                 ..-.++|..+|.++.|++ ++..++||+
T Consensus        97 c~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnF-----------------EtilQaHDs~Vr~m~ws~-~g~wmiSgD  157 (464)
T KOG0284|consen   97 CPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNF-----------------ETILQAHDSPVRTMKWSH-NGTWMISGD  157 (464)
T ss_pred             cceeeEEEcC-CCceeEeecccccEEEecCceeeH-----------------HHHhhhhcccceeEEEcc-CCCEEEEcC
Confidence            4799999996 688999999999999999743210                 112358999999999997 788999999


Q ss_pred             CCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      .++.||+|+..-..+.....+. ..+.+++|+|.   +..+++++.|+.|+|||....+.-..|+||.-.|.++.|+|..
T Consensus       158 ~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpn---DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k  234 (464)
T KOG0284|consen  158 KGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPN---DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK  234 (464)
T ss_pred             CCceEEecccchhhhHHhhHhhhhhhheeccCCC---CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence            9999999998654433222233 56888999983   3478999999999999999998888899999999999999986


Q ss_pred             CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      . +++|+|.|+.|++||.+++.|+.++                                                     
T Consensus       235 g-LiasgskDnlVKlWDprSg~cl~tl-----------------------------------------------------  260 (464)
T KOG0284|consen  235 G-LIASGSKDNLVKLWDPRSGSCLATL-----------------------------------------------------  260 (464)
T ss_pred             c-eeEEccCCceeEeecCCCcchhhhh-----------------------------------------------------
Confidence            4 7899999999999999998776543                                                     


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP  362 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (441)
                                        .+|...|+++.|+|++++|+|+|.|..++++|+++.+..+    ..+.+......+.+.|-.
T Consensus       261 ------------------h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~----~~r~Hkkdv~~~~WhP~~  318 (464)
T KOG0284|consen  261 ------------------HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF----TYRGHKKDVTSLTWHPLN  318 (464)
T ss_pred             ------------------hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH----Hhhcchhhheeecccccc
Confidence                              3577889999999999999999999999999999654322    122233445556666654


Q ss_pred             cEEEE-eCC-CceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          363 AVVFV-PCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       363 ~~~~~-~~~-~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      .-+++ ++. +.+..|.+...+++..+ .+|...|++++++|=|..|+||+.|+++|.|.-.
T Consensus       319 ~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  319 ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            44444 333 57888888744544443 6899999999999999999999999999999754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.9e-33  Score=268.24  Aligned_cols=274  Identities=19%  Similarity=0.317  Sum_probs=207.1

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      |.....||...+++++++| ||+++|||+.||+|+|||...+.++                 -++..|+.+|+.+.|.. 
T Consensus       342 YVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~-----------------vTFteHts~Vt~v~f~~-  402 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCF-----------------VTFTEHTSGVTAVQFTA-  402 (893)
T ss_pred             eeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEE-----------------EEeccCCCceEEEEEEe-
Confidence            3334569999999999996 6889999999999999999877542                 12447999999998876 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC-CcEEEEECCCCceeeeecCCCCCe
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-VQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      .+..++|.|.||+||.||+......+++..+.++.-.++..+. ++.++.+|+.| ..|+||+++||+++-.+.||.++|
T Consensus       403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV  481 (893)
T KOG0291|consen  403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV  481 (893)
T ss_pred             cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence            6889999999999999999999999999988776555555443 34456666655 589999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .+++|+|.+. +|+|+|+|++||+||+-....                                                
T Consensus       482 s~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~------------------------------------------------  512 (893)
T KOG0291|consen  482 SGLSFSPDGS-LLASGSWDKTVRIWDIFSSSG------------------------------------------------  512 (893)
T ss_pred             eeeEEccccC-eEEeccccceEEEEEeeccCc------------------------------------------------
Confidence            9999999998 689999999999999742100                                                


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                             ......+...+++++|+|||+.|++++-||.|.+||+..+...    ..+...    
T Consensus       513 -----------------------~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~----~~Idgr----  561 (893)
T KOG0291|consen  513 -----------------------TVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV----GSIDGR----  561 (893)
T ss_pred             -----------------------eeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee----ccccch----
Confidence                                   0001234456899999999999999999999999999865321    111100    


Q ss_pred             eEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          354 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                                .-..++...--.+       -..-....+..+.+++|+||++|++||..+.|++++++++.+
T Consensus       562 ----------kD~~~gR~~~D~~-------ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl  616 (893)
T KOG0291|consen  562 ----------KDLSGGRKETDRI-------TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL  616 (893)
T ss_pred             ----------hhcccccccccee-------ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence                      0000000000000       001122346799999999999999999999999999986543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3e-33  Score=238.63  Aligned_cols=250  Identities=20%  Similarity=0.320  Sum_probs=196.2

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      -+-+.||+..|+.+..++ ++++.+|+|.|+++|+||+.+++..                 +.+.||+..|.++++++ |
T Consensus        56 ~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t-----------------~~f~GH~~dVlsva~s~-d  116 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGEST-----------------RRFVGHTKDVLSVAFST-D  116 (315)
T ss_pred             eeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEE-----------------EEEEecCCceEEEEecC-C
Confidence            345679999999999995 6889999999999999999877431                 22358999999999987 6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      ..+++|||.|++|++|++...........  .+-+.++.|+|.. ++.+|++++.|+.|++||+++.+....+.||.+-+
T Consensus       117 n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~-~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v  195 (315)
T KOG0279|consen  117 NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE-SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV  195 (315)
T ss_pred             CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC-CCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence            77999999999999999876554332222  3457888999964 46789999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      +.+++||||. ++++|+.||.+.+||++.++++..+                                            
T Consensus       196 ~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl--------------------------------------------  230 (315)
T KOG0279|consen  196 NTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSL--------------------------------------------  230 (315)
T ss_pred             EEEEECCCCC-EEecCCCCceEEEEEccCCceeEec--------------------------------------------
Confidence            9999999997 6899999999999999987765543                                            


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee---eeeeEEecc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV---NFETVRLQT  350 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~---~~~~~~~~~  350 (441)
                                                  .|...|.+++|+|+.-.|+.+. +..|+|||+++.+....   .+.......
T Consensus       231 ----------------------------~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~  281 (315)
T KOG0279|consen  231 ----------------------------EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKA  281 (315)
T ss_pred             ----------------------------cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccccccc
Confidence                                        3456799999999986666554 55599999998653211   000001111


Q ss_pred             Ccc--eEEEeeCCCcEEEEe-CCCceEEEEcc
Q 013545          351 SKP--IQLATTQDPAVVFVP-CMTAVKAFDIW  379 (441)
Q Consensus       351 ~~~--~~~~~~~~~~~~~~~-~~~~~~~wd~~  379 (441)
                      ..+  ..+++++||..++.+ ....+++|.+.
T Consensus       282 ~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  282 GDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            223  457888999999887 44678998763

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=248.30  Aligned_cols=284  Identities=19%  Similarity=0.297  Sum_probs=231.3

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      -+.||..+|+.+-|.|. .-..++++.|++|++||..+++..                 ...+||+++|.++.+.. .|.
T Consensus       103 ~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e-----------------~~LrGHt~sv~di~~~a-~Gk  163 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELE-----------------RSLRGHTDSVFDISFDA-SGK  163 (406)
T ss_pred             hhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhh-----------------hhhhccccceeEEEEec-Ccc
Confidence            35579999999999974 557899999999999999887531                 34569999999999976 589


Q ss_pred             EEEEEeCCCcEEEEECCC-CeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          118 LFVTGSYDHYVKVWDTNC-TRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      ++||+|.|-.+++||..+ .+++... .+...+.++.+-|.+   ..++|++.|.+|++|++.+|.+++++.+|...|..
T Consensus       164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~  240 (406)
T KOG0295|consen  164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRM  240 (406)
T ss_pred             EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEE
Confidence            999999999999999875 3333322 233346677777764   57999999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      ++.+.||. +++|||.|.++++|-+.+..|...+..+                                           
T Consensus       241 v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~h-------------------------------------------  276 (406)
T KOG0295|consen  241 VRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREH-------------------------------------------  276 (406)
T ss_pred             EEecCCee-EEEecCCCceEEEEEeccchhhhhhhcc-------------------------------------------
Confidence            99999986 7999999999999998876554333221                                           


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEcc---------------CCCEEEEeecCCcEEEeeCCCCCcee
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE---------------DGMYLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---------------dg~~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                                  +-+|-+++|-|               .+.++++++.|++|++||+.++...+
T Consensus       277 ----------------------------Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  277 ----------------------------EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             ----------------------------ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence                                        11111111111               34689999999999999999986432


Q ss_pred             eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                          ++..+.+....++++|.|.++++.+. .++++||+.++.+.+++..|+.-|+++.|..+--+++||+-|.++++|-
T Consensus       329 ----tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  329 ----TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ----EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence                44556677888999999999998776 6999999999999999999999999999999999999999999999995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.9e-32  Score=249.97  Aligned_cols=283  Identities=25%  Similarity=0.469  Sum_probs=229.2

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +.+|.+.|++++|+| ++++|++++.||.|++||+.+....                 ....+|...+..+.+.+ ++++
T Consensus         5 ~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~-~~~~   65 (289)
T cd00200           5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAASA-DGTY   65 (289)
T ss_pred             hcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEECC-CCCE
Confidence            458999999999996 5779999999999999998754311                 11236777888888887 5679


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +++++.|+.|++||+.+++.+..+.. ...+..+.+.+.   ..++++++.|+.|++||+.+++....+..|...+.++.
T Consensus        66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  142 (289)
T cd00200          66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA  142 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence            99999999999999998776666654 346777777775   35777777799999999999998888999999999999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      |+|++. ++++++.|+.|++||++.++....+                                                
T Consensus       143 ~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~------------------------------------------------  173 (289)
T cd00200         143 FSPDGT-FVASSSQDGTIKLWDLRTGKCVATL------------------------------------------------  173 (289)
T ss_pred             EcCcCC-EEEEEcCCCcEEEEEccccccceeE------------------------------------------------
Confidence            999876 5677777999999998754322211                                                


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                             ..|...+.+++|+|++..+++++.|+.|++||+.+++...    ....+......+.
T Consensus       174 -----------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~i~~~~  226 (289)
T cd00200         174 -----------------------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG----TLRGHENGVNSVA  226 (289)
T ss_pred             -----------------------ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec----chhhcCCceEEEE
Confidence                                   2355678999999999999999999999999998754321    1112234556678


Q ss_pred             eeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          358 TTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       358 ~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      +.+++.+++++. .+.+++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|+
T Consensus       227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            888877777776 68999999999999999999999999999999999999999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-32  Score=249.12  Aligned_cols=277  Identities=19%  Similarity=0.340  Sum_probs=231.3

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      +.-|++|+|+ .+|.+||+|+.||.++||+......                  .++..|+++|.++.|.. .|.+++|+
T Consensus       235 nkdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKWnk-~G~yilS~  294 (524)
T KOG0273|consen  235 NKDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKWNK-KGTYILSG  294 (524)
T ss_pred             cCCcceEEec-CCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEEcC-CCCEEEec
Confidence            3579999998 6789999999999999999753321                  12347999999999986 68899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCee-EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      +-|+++.+||..++++...+.+.... .++.+..    +.-+++++.|+.|+|+-+....++.++.||.++|.++.|.|.
T Consensus       295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~----~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t  370 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS----NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT  370 (524)
T ss_pred             cCCccEEEEeccCceEEEeeeeccCCccceEEec----CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC
Confidence            99999999999999999888865443 4455543    346899999999999999988999999999999999999999


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      +. +|+|+|.|++++||.+....++..                                                     
T Consensus       371 g~-LLaS~SdD~TlkiWs~~~~~~~~~-----------------------------------------------------  396 (524)
T KOG0273|consen  371 GS-LLASCSDDGTLKIWSMGQSNSVHD-----------------------------------------------------  396 (524)
T ss_pred             Cc-eEEEecCCCeeEeeecCCCcchhh-----------------------------------------------------
Confidence            87 789999999999999765433322                                                     


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCC---------CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG---------MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                        +.+|...|..+.|+|+|         ..+++++.|++|++||+..+...    +.+..++..
T Consensus       397 ------------------l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~kH~~p  454 (524)
T KOG0273|consen  397 ------------------LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMKHQEP  454 (524)
T ss_pred             ------------------hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----EeeccCCCc
Confidence                              23566778888888865         46999999999999999988643    344445677


Q ss_pred             ceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          353 PIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ...++++|++.+++++.. +.+.+|+..+++..+.+.+.. .|..|+|+.+|.+|..+-.|+.+++-|+
T Consensus       455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG-GIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             eEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC-eEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            788999999999999876 679999999999999988664 4999999999999999999999988764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.7e-33  Score=251.76  Aligned_cols=308  Identities=19%  Similarity=0.288  Sum_probs=228.0

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCccc-CCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY-EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ++++ |..+|.+.+|+|.....+++|+.|-+.++|++...... .....+ +|. +...  .........|+++.|+. +
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-rh~-~~~~--~~s~~~nkdVT~L~Wn~-~  246 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-RHC-IREG--GKSVPSNKDVTSLDWNN-D  246 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-hhh-hhhh--cccCCccCCcceEEecC-C
Confidence            3444 99999999999876658999999999999998641100 000000 000 0000  00012335799999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      |..||+|+.||.+|||+.........-.+.+++.++.+.-.   ..+|++++.|+++.+||..+|...+.+.-|..+-..
T Consensus       247 G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD  323 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD  323 (524)
T ss_pred             CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence            99999999999999999854443333345688988888764   458999999999999999999988888889888788


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      |.|-.+.+  |++++.|+.|+++-+.....                                                  
T Consensus       324 VdW~~~~~--F~ts~td~~i~V~kv~~~~P--------------------------------------------------  351 (524)
T KOG0273|consen  324 VDWQSNDE--FATSSTDGCIHVCKVGEDRP--------------------------------------------------  351 (524)
T ss_pred             eEEecCce--EeecCCCceEEEEEecCCCc--------------------------------------------------
Confidence            89987754  79999999999998752110                                                  


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  355 (441)
                                           ...+.+|.++|.+|.|.|.|.+|+|+|.|+|++||+......    ++.+..+...+..
T Consensus       352 ---------------------~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~----~~~l~~Hskei~t  406 (524)
T KOG0273|consen  352 ---------------------VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS----VHDLQAHSKEIYT  406 (524)
T ss_pred             ---------------------ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc----hhhhhhhccceee
Confidence                                 012457999999999999999999999999999999764321    1111112222222


Q ss_pred             EEeeC---------CCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          356 LATTQ---------DPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       356 ~~~~~---------~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +.++|         .+..++++ ...+|++||+..+.++++|..|..+|.+|+|||+|++||||+-|+.|.+|+..++++
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l  486 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL  486 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence            22322         23344444 447999999999999999999999999999999999999999999999999999886


Q ss_pred             CCccC
Q 013545          426 DGVDA  430 (441)
Q Consensus       426 ~~~~~  430 (441)
                      -....
T Consensus       487 ~~s~~  491 (524)
T KOG0273|consen  487 VKSYQ  491 (524)
T ss_pred             eEeec
Confidence            54433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=268.07  Aligned_cols=286  Identities=24%  Similarity=0.441  Sum_probs=230.8

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      |...|.++.|++ +++++++++.|+.+++|+..+... .              ......+|...|.+++|++ ++.++++
T Consensus       158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~-~--------------~~~~l~~h~~~v~~~~fs~-d~~~l~s  220 (456)
T KOG0266|consen  158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS-N--------------LLRELSGHTRGVSDVAFSP-DGSYLLS  220 (456)
T ss_pred             ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc-h--------------hhccccccccceeeeEECC-CCcEEEE
Confidence            478999999996 578899999999999999854431 0              0122258999999999998 7889999


Q ss_pred             EeCCCcEEEEEC-CCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545          122 GSYDHYVKVWDT-NCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       122 gs~D~~i~iWd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs  199 (441)
                      ++.|++|||||+ ..+..++++. +...++++.|++.+   .++++|+.|++|++||++++++...+.+|.+.|++++|+
T Consensus       221 ~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~  297 (456)
T KOG0266|consen  221 GSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS  297 (456)
T ss_pred             ecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence            999999999999 4557777775 45678899999865   589999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCc--eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      +++. +|++++.|+.|++||+.++.  |...+..                                              
T Consensus       298 ~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~----------------------------------------------  330 (456)
T KOG0266|consen  298 PDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSG----------------------------------------------  330 (456)
T ss_pred             CCCC-EEEEcCCCccEEEEECCCCceeeeecccC----------------------------------------------
Confidence            9998 57888999999999998764  2221100                                              


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc---ce
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK---PI  354 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~---~~  354 (441)
                                            ..... +++.++|+|++.++++++.|+++++||+.+++....    ...+...   ..
T Consensus       331 ----------------------~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~----~~~~~~~~~~~~  383 (456)
T KOG0266|consen  331 ----------------------AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT----YTGHSNLVRCIF  383 (456)
T ss_pred             ----------------------CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee----ecccCCcceeEe
Confidence                                  00112 589999999999999999999999999997753221    1111121   11


Q ss_pred             EEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc-ccceEEEEEcCCCCeEEEee--cCCcEEEeCCC
Q 013545          355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-YEYVNCCCFSSQDQELYTGG--NDRQILVWCPS  421 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh-~~~v~~v~fspd~~~l~s~s--~D~~i~vW~~~  421 (441)
                      .....+.+..++++.. ..+.+|++.++..+..+.+| ...+..++++|...++++++  .|+.|++|..+
T Consensus       384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            2333567778877765 68999999999999999999 99999999999999999988  79999999764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-33  Score=249.33  Aligned_cols=293  Identities=20%  Similarity=0.329  Sum_probs=224.2

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      -.++..|..+|+-+.||+ +|+||||||.|.+.-||++.....+.              -..+..||..+|.-+.|+| |
T Consensus       217 ~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~k--------------l~~tlvgh~~~V~yi~wSP-D  280 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFK--------------LKKTLVGHSQPVSYIMWSP-D  280 (519)
T ss_pred             hhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCccee--------------eeeeeecccCceEEEEECC-C
Confidence            456778999999999995 79999999999999999986443211              1234568999999999998 6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-CC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DG  192 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-~~  192 (441)
                      ..+|++|+.|..+++||+.+|...+.++..  -.+.++++.|++.   -+++|+.|..|..||+... .+...++-. ..
T Consensus       281 dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~  356 (519)
T KOG0293|consen  281 DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPK  356 (519)
T ss_pred             CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcc-hhhcccccccce
Confidence            679999999999999999999988877654  4577888998765   5889999999999999644 344444433 45


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      |.+++..+||+++ ++...|..|++++.....+..                                             
T Consensus       357 v~dlait~Dgk~v-l~v~~d~~i~l~~~e~~~dr~---------------------------------------------  390 (519)
T KOG0293|consen  357 VHDLAITYDGKYV-LLVTVDKKIRLYNREARVDRG---------------------------------------------  390 (519)
T ss_pred             eEEEEEcCCCcEE-EEEecccceeeechhhhhhhc---------------------------------------------
Confidence            8999999999986 456689999999875321100                                             


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                                 ......+|++.++|.|++++++.=.+..+++||++..+... .+...+ +..-
T Consensus       391 ---------------------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~-kY~Ghk-q~~f  441 (519)
T KOG0293|consen  391 ---------------------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR-KYFGHK-QGHF  441 (519)
T ss_pred             ---------------------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH-Hhhccc-ccce
Confidence                                       01123569999999999999999999999999998443211 111111 1122


Q ss_pred             ceEEEeeC-CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCC
Q 013545          353 PIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       353 ~~~~~~~~-~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~  423 (441)
                      .+..+|.. +...+++++. ..+.+|+..+|+++.+|+||.+.|+||+|+|.. .++||||+||+||||.+...
T Consensus       442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            33334433 3355666654 589999999999999999999999999999976 55899999999999988654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.2e-33  Score=268.92  Aligned_cols=208  Identities=26%  Similarity=0.489  Sum_probs=179.4

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ..+.+.||.++|+.+.|+| +.++|+|+|.|+++|+|.+.+....             +.    ..||..+|+++.|.| 
T Consensus       443 ~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~-------------V~----y~GH~~PVwdV~F~P-  503 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCL-------------VI----YKGHLAPVWDVQFAP-  503 (707)
T ss_pred             eeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeE-------------EE----ecCCCcceeeEEecC-
Confidence            3556889999999999997 5789999999999999999876531             11    248999999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      .|-+|||||.|++.++|......+++.+.. .+.+.++.|+|.   ..++|+||.|.+|++||+.+|..++.|.||.++|
T Consensus       504 ~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN---s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V  580 (707)
T KOG0263|consen  504 RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN---SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV  580 (707)
T ss_pred             CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc---ccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence            688999999999999999887777666543 356788889985   4599999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .+++|||+|++ |+||+.||.|++||+.+++.+.                                              
T Consensus       581 ~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~~~v~----------------------------------------------  613 (707)
T KOG0263|consen  581 TALAFSPCGRY-LASGDEDGLIKIWDLANGSLVK----------------------------------------------  613 (707)
T ss_pred             EEEEEcCCCce-EeecccCCcEEEEEcCCCcchh----------------------------------------------
Confidence            99999999985 7999999999999998653211                                              


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                               .+.+|.+.|.+|.||.||..||+||.|.+|++||+...
T Consensus       614 -------------------------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  614 -------------------------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             -------------------------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence                                     13468889999999999999999999999999999764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.6e-33  Score=243.80  Aligned_cols=250  Identities=23%  Similarity=0.384  Sum_probs=211.6

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..||.+-|.|+++-|. .+.|+||+.|++|+|||+.++++..++. +-..+..+++++.   ..++.+++.|+.|+-|||
T Consensus       147 i~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r---HpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR---HPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---CceEEEecCCCeeEEEec
Confidence            4599999999999884 6799999999999999999999887776 4456777787764   458999999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      +..+.++.+-||-+.|.|++.+|.-+ +|+||+.|.++|+||+|+...+.+                             
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~-----------------------------  272 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHV-----------------------------  272 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEE-----------------------------
Confidence            99999999999999999999999876 689999999999999996432221                             


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                +.+|..+|.+|.+-|....++|||-|++|++||+..++
T Consensus       273 ------------------------------------------l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  273 ------------------------------------------LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             ------------------------------------------ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence                                                      35789999999999999999999999999999999887


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEE
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV  417 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~v  417 (441)
                      .....++    +-.....++..|.-..+++++...++.|++-.|..+..+++|..-|++++.+.|| .+++|++.|.+..
T Consensus       311 t~~tlt~----hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~f  385 (460)
T KOG0285|consen  311 TMITLTH----HKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMF  385 (460)
T ss_pred             eeEeeec----ccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEE
Confidence            4332221    2223445666777666777778899999999999999999999999999999886 8889999999999


Q ss_pred             eCCCCCCCCCcc
Q 013545          418 WCPSRHISDGVD  429 (441)
Q Consensus       418 W~~~~~~~~~~~  429 (441)
                      ||..++.--+..
T Consensus       386 wdwksg~nyQ~~  397 (460)
T KOG0285|consen  386 WDWKSGHNYQRG  397 (460)
T ss_pred             EecCcCcccccc
Confidence            999988754444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.1e-31  Score=277.49  Aligned_cols=295  Identities=16%  Similarity=0.286  Sum_probs=221.7

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+|.+.|++++|+| ++++||||+.|++|+|||+........    ..+..+...      .+...|.++.|.+.++.+|
T Consensus       480 ~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~------~~~~~v~~l~~~~~~~~~l  548 (793)
T PLN00181        480 LNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVEL------ASRSKLSGICWNSYIKSQV  548 (793)
T ss_pred             cCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccc----ccccceEEe------cccCceeeEEeccCCCCEE
Confidence            45899999999996 578999999999999999764211000    001111111      2345788899988778899


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      |+++.|++|++||+.+++.+..+. +.+.+.++.+++.  +..+|++|+.|+.|++||+.++..+..+..+ ..|.++.|
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~  625 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQF  625 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEE
Confidence            999999999999999988877775 4567889998863  2358999999999999999999988888755 67999999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      ++++...|++|+.||+|++||++..+. ..                                                  
T Consensus       626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~--------------------------------------------------  655 (793)
T PLN00181        626 PSESGRSLAFGSADHKVYYYDLRNPKLPLC--------------------------------------------------  655 (793)
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCccce--------------------------------------------------
Confidence            654334689999999999999875320 00                                                  


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce--eeeeeeEEeccCcceE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT--LVNFETVRLQTSKPIQ  355 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~  355 (441)
                                           ...+|...|.++.|. ++.+|++++.|++|++||+......  .........+......
T Consensus       656 ---------------------~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        656 ---------------------TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             ---------------------EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence                                 123577889999997 7889999999999999999753210  0112222333444556


Q ss_pred             EEeeCCCcEEEEeCC-CceEEEEccCCceEe-------------eecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          356 LATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-------------TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~-------------~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      +.+++++.++++++. +.+++|+........             .+..|...|.+++|+|++..|++|+.||+|+||++
T Consensus       714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            788888888888765 689999976543321             12346677999999999999999999999999985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.8e-33  Score=235.15  Aligned_cols=288  Identities=22%  Similarity=0.335  Sum_probs=227.5

Q ss_pred             ecCCCCceeEEEccCC--CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           39 VSPHKGSINSLQVDLT--EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      -.||+.+|..|+|||-  +|-+|+|++.||.-.+-+-+++.=.                 .++.||+++|++..... +.
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-----------------gtfeghkgavw~~~l~~-na   71 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-----------------GTFEGHKGAVWSATLNK-NA   71 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-----------------EeeeccCcceeeeecCc-hh
Confidence            4599999999999854  4668999999999888776665311                 24569999999877754 56


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMT  195 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~  195 (441)
                      .+.||++.|.+-++||.-+|..++.+.+...+..++|+.+.   ..|++|+.+.-++|||++..+ +.+.+.+|++.|..
T Consensus        72 ~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds---~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~  148 (334)
T KOG0278|consen   72 TRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDS---NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRT  148 (334)
T ss_pred             hhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccc---hhhhccchHHHhhhhhccCCCCCchhhcCCCCccee
Confidence            67899999999999999999999999888788888888764   468899999999999998875 56889999999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +.|....+. ++|++.|++||+||.+++...+.++.                                            
T Consensus       149 v~wc~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~~--------------------------------------------  183 (334)
T KOG0278|consen  149 VLWCHEDKC-ILSSADDKTVRLWDHRTGTEVQSLEF--------------------------------------------  183 (334)
T ss_pred             EEEeccCce-EEeeccCCceEEEEeccCcEEEEEec--------------------------------------------
Confidence            999988876 56779999999999998865554421                                            


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  355 (441)
                                                  ..+|+++-++++|.+|. ....+.|++||..+-..    +....+. -....
T Consensus       184 ----------------------------~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~----lKs~k~P-~nV~S  229 (334)
T KOG0278|consen  184 ----------------------------NSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGL----LKSYKMP-CNVES  229 (334)
T ss_pred             ----------------------------CCCCcceeeccCCCEEE-EecCceeEEeccccccc----eeeccCc-ccccc
Confidence                                        24588999999997765 45677899999876432    1111111 11223


Q ss_pred             EEeeCCCcEEEEeCC-CceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          356 LATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      .+..|+....+.++. .-+..||..+|.....+ +||.++|.||.|||||...++||+||+||||...-++.-
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            456677755544443 46888999999999887 999999999999999999999999999999987655433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.8e-31  Score=222.43  Aligned_cols=288  Identities=19%  Similarity=0.294  Sum_probs=213.4

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|.+.|+.++++|.-|..|+|+|.|++||||++..+..+.       .+  .++    ..+|+..|.+++|+| .+
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~-------ck--~vl----d~~hkrsVRsvAwsp-~g   73 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT-------CK--TVL----DDGHKRSVRSVAWSP-HG   73 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE-------EE--Eec----cccchheeeeeeecC-CC
Confidence            45679999999999997436789999999999999987433221       11  111    238999999999998 68


Q ss_pred             CEEEEEeCCCcEEEEECCCCeE--EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC---ceeeeecCCC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRV--VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLSGHR  190 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~---~~~~~l~~h~  190 (441)
                      ++||+||.|.++-||.-..+..  +..+. ++..+-++++++.   ..+||+++-|.+|-+|.+..+   +++..|++|+
T Consensus        74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s---G~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS---GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC---CCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence            8999999999999998765554  33333 2345778888875   459999999999999999754   4678899999


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      ..|--+.|+|... +|+|+|-|++||+|+-..+...                                            
T Consensus       151 qDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW--------------------------------------------  185 (312)
T KOG0645|consen  151 QDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDW--------------------------------------------  185 (312)
T ss_pred             ccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCe--------------------------------------------
Confidence            9999999999765 7899999999999975421100                                            


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                              .....+.+|.+.|.+++|++.|..|++++.|++++||-.-+.-         ...+
T Consensus       186 ------------------------~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------~~~~  232 (312)
T KOG0645|consen  186 ------------------------ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------SGMH  232 (312)
T ss_pred             ------------------------eEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------chhc
Confidence                                    0011234677889999999999999999999999999744211         0111


Q ss_pred             C-cceEEEeeCCCcEEEEe-CCCceEEEEccCCc------e-EeeecccccceEEEEEcCC-CCeEEEeecCCcEEEeCC
Q 013545          351 S-KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGK------T-CLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILVWCP  420 (441)
Q Consensus       351 ~-~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~------~-~~~l~gh~~~v~~v~fspd-~~~l~s~s~D~~i~vW~~  420 (441)
                      + ....++.. + ..+.++ +...+++|.....-      + .+.-..|...|++|+|+|. ...|+|||.||+|++|..
T Consensus       233 sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  233 SRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             ccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence            1 11223444 3 334444 44688888765431      1 1133578899999999995 678999999999999976


Q ss_pred             C
Q 013545          421 S  421 (441)
Q Consensus       421 ~  421 (441)
                      .
T Consensus       311 ~  311 (312)
T KOG0645|consen  311 E  311 (312)
T ss_pred             c
Confidence            3

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-33  Score=247.63  Aligned_cols=234  Identities=26%  Similarity=0.470  Sum_probs=189.5

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      ...|+|++++  ++ .++||..|.||+|||..+....                 ....||++.|.|+.+   +..+++||
T Consensus       197 skgVYClQYD--D~-kiVSGlrDnTikiWD~n~~~c~-----------------~~L~GHtGSVLCLqy---d~rviisG  253 (499)
T KOG0281|consen  197 SKGVYCLQYD--DE-KIVSGLRDNTIKIWDKNSLECL-----------------KILTGHTGSVLCLQY---DERVIVSG  253 (499)
T ss_pred             CCceEEEEec--ch-hhhcccccCceEEeccccHHHH-----------------HhhhcCCCcEEeeec---cceEEEec
Confidence            4789999995  34 5999999999999998765431                 234699999999988   45699999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecCCCCCeEEEEE
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~h~~~v~~v~f  198 (441)
                      |.|.||++||+++++++.++-++ ..+.-+.|+     +.++++++.|.+|.+||+....   +.+.+.||...|..|.|
T Consensus       254 SSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf  328 (499)
T KOG0281|consen  254 SSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF  328 (499)
T ss_pred             CCCceEEEEeccCCchhhHHhhhcceeEEEEEe-----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc
Confidence            99999999999999998765443 334444444     3478999999999999998764   34678899999999999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  278 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (441)
                      +.  + +++|+|.|.+||+|++.++.+++++                                                 
T Consensus       329 d~--k-yIVsASgDRTikvW~~st~efvRtl-------------------------------------------------  356 (499)
T KOG0281|consen  329 DD--K-YIVSASGDRTIKVWSTSTCEFVRTL-------------------------------------------------  356 (499)
T ss_pred             cc--c-eEEEecCCceEEEEeccceeeehhh-------------------------------------------------
Confidence            64  4 5799999999999999987766554                                                 


Q ss_pred             ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545          279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (441)
                                            .+|...|.++.+  .|++++|||.|.+||+||++.|                      
T Consensus       357 ----------------------~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G----------------------  390 (499)
T KOG0281|consen  357 ----------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG----------------------  390 (499)
T ss_pred             ----------------------hcccccceehhc--cCeEEEecCCCceEEEEecccc----------------------
Confidence                                  245555666554  6889999999999999998754                      


Q ss_pred             eCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545          359 TQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       359 ~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~  427 (441)
                                             +++..|.||+.-|.|+.|.  .+.++||+-||+|+|||..+....+
T Consensus       391 -----------------------~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpr  434 (499)
T KOG0281|consen  391 -----------------------ACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPR  434 (499)
T ss_pred             -----------------------HHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCc
Confidence                                   4556788999999999986  5899999999999999998776543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-30  Score=239.21  Aligned_cols=299  Identities=18%  Similarity=0.289  Sum_probs=227.9

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ...+++.|...|+-..|+|. |-|++||...|+|||||....+      ++      +.   ....--.++|..+.|.. 
T Consensus        51 ~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~------hi------LK---nef~v~aG~I~Di~Wd~-  113 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKE------HI------LK---NEFQVLAGPIKDISWDF-  113 (603)
T ss_pred             ceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcc------ee------ee---eeeeecccccccceeCC-
Confidence            35678899999999999985 7799999999999999975322      11      11   11223446788999987 


Q ss_pred             CCCEEEEEeC--C--CcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545          115 DTGLFVTGSY--D--HYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (441)
Q Consensus       115 ~~~~l~sgs~--D--~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h  189 (441)
                      |+.+++..|+  +  +.+.+||.  |.-+..+..+ ..+.++.+.|.  ....+++|+.|+.|.+|+=..-+...+++.|
T Consensus       114 ds~RI~avGEGrerfg~~F~~DS--G~SvGei~GhSr~ins~~~Kps--RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~H  189 (603)
T KOG0318|consen  114 DSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGHSRRINSVDFKPS--RPFRIATGSDDNTVAFFEGPPFKFKSSFREH  189 (603)
T ss_pred             CCcEEEEEecCccceeEEEEecC--CCccceeeccceeEeeeeccCC--CceEEEeccCCCeEEEeeCCCeeeeeccccc
Confidence            6777766554  3  34666774  4444444433 34666777664  3468999999999999998777778889999


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ..-|.|+.|+|||+ +|+|.+.||+|.+||=.++..+..++.                                      
T Consensus       190 skFV~~VRysPDG~-~Fat~gsDgki~iyDGktge~vg~l~~--------------------------------------  230 (603)
T KOG0318|consen  190 SKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKVGELED--------------------------------------  230 (603)
T ss_pred             ccceeeEEECCCCC-eEEEecCCccEEEEcCCCccEEEEecC--------------------------------------
Confidence            99999999999998 589999999999999776654333321                                      


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  349 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~  349 (441)
                                                    ..+|.+.|.+|+|+||++.++|.|+|+++||||+.+.+...    +..+.
T Consensus       231 ------------------------------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~----t~~~~  276 (603)
T KOG0318|consen  231 ------------------------------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS----TWPMG  276 (603)
T ss_pred             ------------------------------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE----EeecC
Confidence                                          13689999999999999999999999999999999875321    21211


Q ss_pred             c---CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          350 T---SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       350 ~---~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      .   +..+-+.+. ...++.+...+.+..++....+.+.++.||.+.|++++.+||+++|+||+.||.|.-|+..++..+
T Consensus       277 ~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  277 STVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             CchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence            1   112222333 344444555688999999999999999999999999999999999999999999999999999988


Q ss_pred             Cc
Q 013545          427 GV  428 (441)
Q Consensus       427 ~~  428 (441)
                      .+
T Consensus       356 ~~  357 (603)
T KOG0318|consen  356 RL  357 (603)
T ss_pred             cc
Confidence            54

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-31  Score=255.37  Aligned_cols=284  Identities=19%  Similarity=0.266  Sum_probs=228.6

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .|-.++|..++|-.++.++|+.+++.+.+|+|++.+....                  -..||+..|.++..+. +|.+|
T Consensus       320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------------------ii~GH~e~vlSL~~~~-~g~ll  380 (775)
T KOG0319|consen  320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------------------IIPGHTEAVLSLDVWS-SGDLL  380 (775)
T ss_pred             cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE------------------EEeCchhheeeeeecc-cCcEE
Confidence            4677999999987666789999999999999988765431                  1248999999998554 56899


Q ss_pred             EEEeCCCcEEEEECCCCeE----EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-----ee----e
Q 013545          120 VTGSYDHYVKVWDTNCTRV----VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-----SQ----T  185 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-----~~----~  185 (441)
                      +|||.|+++++|.++.+..    +.... +.+.+..++++..  +...|+++|.|.++++|++...+.     ..    +
T Consensus       381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~--~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t  458 (775)
T KOG0319|consen  381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL--GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT  458 (775)
T ss_pred             EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc--CccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence            9999999999998844332    22222 3345666666443  345899999999999999976321     11    3


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      ...|...|.||+++|+++ +++|||.|++.+||++.......                                      
T Consensus       459 ~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~l~~--------------------------------------  499 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLRLLG--------------------------------------  499 (775)
T ss_pred             HHhhcccccceEecCCCc-eEEecccccceeeecccCceEEE--------------------------------------
Confidence            357999999999999987 78999999999999987432222                                      


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  345 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~  345 (441)
                                                       .+.+|...|.+|.|+|..+.++|+|.|+||+||.+++..    ...+
T Consensus       500 ---------------------------------vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS----ClkT  542 (775)
T KOG0319|consen  500 ---------------------------------VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS----CLKT  542 (775)
T ss_pred             ---------------------------------EeeCCccceEEEEeccccceeEeccCCceEEEEEeccce----eeee
Confidence                                             235788889999999999999999999999999998754    2345


Q ss_pred             EEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          346 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      +..+......+.|..+++.+++++. +-+|+|++.++++..++.+|++.||.++.+|++.+++||+.|+.|.+|.-
T Consensus       543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            5556667778888888888887765 67899999999999999999999999999999999999999999999943

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.6e-33  Score=243.93  Aligned_cols=254  Identities=26%  Similarity=0.449  Sum_probs=197.7

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      .++.||+|+|.||+|.   .+.|+|||.|.||+|||+++++...                 +.-+|..+|..+.|+   .
T Consensus       231 ~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~-----------------tlihHceaVLhlrf~---n  287 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLN-----------------TLIHHCEAVLHLRFS---N  287 (499)
T ss_pred             HhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhh-----------------HHhhhcceeEEEEEe---C
Confidence            3577999999999995   4699999999999999999887531                 223788889888885   4


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEe-cCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~  192 (441)
                      .+++|+|.|++|++||+....-+.... +-|   .+..+.|     +..++++++.|.+|++|++.++++++++.||.-.
T Consensus       288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf-----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRG  362 (499)
T KOG0281|consen  288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG  362 (499)
T ss_pred             CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc-----ccceEEEecCCceEEEEeccceeeehhhhccccc
Confidence            599999999999999987654221100 112   2333333     3358999999999999999999999999999999


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      |-|+.+.  ++ +++|||.|.+||+||+..|.|++++                                           
T Consensus       363 IAClQYr--~r-lvVSGSSDntIRlwdi~~G~cLRvL-------------------------------------------  396 (499)
T KOG0281|consen  363 IACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVL-------------------------------------------  396 (499)
T ss_pred             ceehhcc--Ce-EEEecCCCceEEEEeccccHHHHHH-------------------------------------------
Confidence            9999985  34 7899999999999999999887765                                           


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                                  .+|+.-|.++.|  |.+.|+||+.||+|++||+..+......          
T Consensus       397 ----------------------------eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~----------  436 (499)
T KOG0281|consen  397 ----------------------------EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAP----------  436 (499)
T ss_pred             ----------------------------hchHHhhhheee--cCceeeeccccceEEEEecccccCCccc----------
Confidence                                        357777899999  4678999999999999999865321100          


Q ss_pred             ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCCc
Q 013545          353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGP  432 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~~  432 (441)
                              .                  +--++.++.-|.+.|..+.|.  ...+++++.|.+|.|||.-.+....-..++
T Consensus       437 --------~------------------~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~~~~~~r  488 (499)
T KOG0281|consen  437 --------A------------------STLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPSAAEETR  488 (499)
T ss_pred             --------c------------------cchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCccccccCC
Confidence                    0                  012344566799999999885  578999999999999998776655444444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3e-30  Score=221.64  Aligned_cols=255  Identities=24%  Similarity=0.366  Sum_probs=217.2

Q ss_pred             ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545           97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus        97 ~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      ..++||...|.++-|.+ |..+++|+|.||.+.|||.-+...++-++++.. +..++++|.   ...+|.|+.|+.+.||
T Consensus        49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS---g~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS---GNFVACGGLDNKCSIY  124 (343)
T ss_pred             EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC---CCeEEecCcCceeEEE
Confidence            45679999999999987 788999999999999999998888888888754 788888885   4589999999999999


Q ss_pred             ECCCC------ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccc
Q 013545          176 DIASG------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLS  249 (441)
Q Consensus       176 dl~~~------~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (441)
                      ++.+.      +..+.+.+|++-+.|..|-+|+.  |+|+|.|.++.+||++++.....                     
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~---------------------  181 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQV---------------------  181 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEE---------------------
Confidence            99865      23467899999999999999764  67999999999999998754332                     


Q ss_pred             cCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcE
Q 013545          250 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRI  328 (441)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i  328 (441)
                                                                        +.+|.+.|.+|+++| +++.++||+-|++.
T Consensus       182 --------------------------------------------------f~GH~gDV~slsl~p~~~ntFvSg~cD~~a  211 (343)
T KOG0286|consen  182 --------------------------------------------------FHGHTGDVMSLSLSPSDGNTFVSGGCDKSA  211 (343)
T ss_pred             --------------------------------------------------ecCCcccEEEEecCCCCCCeEEecccccce
Confidence                                                              347899999999999 99999999999999


Q ss_pred             EEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc--ccceEEEEEcCCCCe
Q 013545          329 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH--YEYVNCCCFSSQDQE  405 (441)
Q Consensus       329 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh--~~~v~~v~fspd~~~  405 (441)
                      ++||++.+...    .++..+...+..+.+.|+|.-+++++. .++|+||+.....+..+...  ..+|++|+||..|++
T Consensus       212 klWD~R~~~c~----qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl  287 (343)
T KOG0286|consen  212 KLWDVRSGQCV----QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL  287 (343)
T ss_pred             eeeeccCccee----EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence            99999987532    233445677788999999998888877 58999999998888877632  357999999999999


Q ss_pred             EEEeecCCcEEEeCCCCCCCCCccCCc
Q 013545          406 LYTGGNDRQILVWCPSRHISDGVDAGP  432 (441)
Q Consensus       406 l~s~s~D~~i~vW~~~~~~~~~~~~~~  432 (441)
                      |++|..|.++.+||.=.+...+++.|-
T Consensus       288 Lfagy~d~~c~vWDtlk~e~vg~L~GH  314 (343)
T KOG0286|consen  288 LFAGYDDFTCNVWDTLKGERVGVLAGH  314 (343)
T ss_pred             EEeeecCCceeEeeccccceEEEeecc
Confidence            999999999999999888877777664

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.9e-31  Score=250.52  Aligned_cols=359  Identities=17%  Similarity=0.240  Sum_probs=242.5

Q ss_pred             hccccceecccceeeecCCCCceeEEEccCCCCc-EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCc
Q 013545           24 SHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEER-YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH  102 (441)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  102 (441)
                      ..++..+....-...+.||.|.|.++.|.|.... .|++|+.|+++++||+.+...-                ......|
T Consensus       128 ~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc----------------l~~~~~H  191 (775)
T KOG0319|consen  128 RVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC----------------LHTMILH  191 (775)
T ss_pred             eEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchH----------------HHHHHhh
Confidence            3355555444345568899999999999986543 5899999999999999754320                0123479


Q ss_pred             ccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEE-------------------------------
Q 013545          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRT-------------------------------  151 (441)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~-------------------------------  151 (441)
                      ...|+++.+.+ |+..++++|+|+.+.+||+.+.+.+.+.+....+-.+                               
T Consensus       192 ~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~  270 (775)
T KOG0319|consen  192 KSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG  270 (775)
T ss_pred             hhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence            99999999987 6889999999999999998654432222110000000                               


Q ss_pred             ---------------------------------------------------------eeccCCCCccEEEEEeCCCcEEE
Q 013545          152 ---------------------------------------------------------AMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus       152 ---------------------------------------------------------~~~~~~~~~~~las~s~d~~I~v  174 (441)
                                                                               .+...++....||+++....+|+
T Consensus       271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL  350 (775)
T ss_pred             hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence                                                                     00011122245777777778888


Q ss_pred             EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceee----EeccCCccccCCCCccccccccc
Q 013545          175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR----VLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      |++.+..+. .+.||.+.|.++....+| .+|+|||.|+++++|.++.+.+..    ....+...++..           
T Consensus       351 y~~~~~~c~-ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav-----------  417 (775)
T KOG0319|consen  351 YTLPTSYCQ-IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV-----------  417 (775)
T ss_pred             EecCCCceE-EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee-----------
Confidence            887776654 789999999999955555 479999999999999884432111    111111110000           


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                           ...+....+...+.+......|.++...+..   .+..+...-...+|...|++|+++|+.+.|||||.|++.+|
T Consensus       418 -----a~~~~~asffvsvS~D~tlK~W~l~~s~~~~---~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi  489 (775)
T KOG0319|consen  418 -----AGSKLGASFFVSVSQDCTLKLWDLPKSKETA---FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI  489 (775)
T ss_pred             -----eecccCccEEEEecCCceEEEecCCCccccc---ccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence                 0000111111111111222222222111000   11112222234578999999999999999999999999999


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      |+++..+.    ...+..+..+...+.|++....+++.+. .++|+|.+.+..++++|.||+..|.-+.|-.+|+.|+||
T Consensus       490 W~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~  565 (775)
T KOG0319|consen  490 WDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISA  565 (775)
T ss_pred             ecccCceE----EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEec
Confidence            99994432    3455566677888999988888877655 699999999999999999999999999999999999999


Q ss_pred             ecCCcEEEeCCCCCC
Q 013545          410 GNDRQILVWCPSRHI  424 (441)
Q Consensus       410 s~D~~i~vW~~~~~~  424 (441)
                      ++||-|+||++.++.
T Consensus       566 ~adGliKlWnikt~e  580 (775)
T KOG0319|consen  566 GADGLIKLWNIKTNE  580 (775)
T ss_pred             cCCCcEEEEeccchh
Confidence            999999999998775

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-31  Score=225.37  Aligned_cols=246  Identities=27%  Similarity=0.443  Sum_probs=201.6

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      ...++.++|++..++.+++++.||++||||+.....+           +     ...+.|+.+|.++.+.+.++..++++
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P-----------i-----~~~kEH~~EV~Svdwn~~~r~~~lts  123 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP-----------I-----HKFKEHKREVYSVDWNTVRRRIFLTS  123 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcc-----------h-----hHHHhhhhheEEeccccccceeEEee
Confidence            4789999999888889999999999999996544321           1     22457999999999999889999999


Q ss_pred             eCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      |+|++||+||...+.-++++.. ...++...++|..  ..+++++|.|+.+++||++..-..+.+..|..++.|..|+.-
T Consensus       124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~--~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky  201 (311)
T KOG0277|consen  124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI--PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY  201 (311)
T ss_pred             ccCCceEeecCCCCcceEeecCCccEEEEEecCCCC--CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence            9999999999998888888875 4568888999875  469999999999999999865444558999999999999998


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      ++++++||+.|+.||.||+|+.+.               |                                        
T Consensus       202 ~~~vl~Tg~vd~~vr~wDir~~r~---------------p----------------------------------------  226 (311)
T KOG0277|consen  202 NHNVLATGGVDNLVRGWDIRNLRT---------------P----------------------------------------  226 (311)
T ss_pred             CCcEEEecCCCceEEEEehhhccc---------------c----------------------------------------
Confidence            889999999999999999986320               0                                        


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ  360 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (441)
                                     ...+.+|.-.|+.|+|||-. ..|+|++.|.++||||.+.+...                     
T Consensus       227 ---------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---------------------  270 (311)
T KOG0277|consen  227 ---------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---------------------  270 (311)
T ss_pred             ---------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh---------------------
Confidence                           00134677789999999975 57899999999999998864321                     


Q ss_pred             CCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcC-CCCeEEEeecCCcEEEeCC
Q 013545          361 DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       361 ~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~~i~vW~~  420 (441)
                                             ..+..-|+.-|..+.||+ +..++|++++|..+.||++
T Consensus       271 -----------------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  271 -----------------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -----------------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence                                   112234777788888887 5678999999999999997

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=4e-30  Score=245.50  Aligned_cols=325  Identities=20%  Similarity=0.374  Sum_probs=224.5

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .++||..+|++|.|+. .|..|+|||.|+.|.+||+-..+.            .+     -.+||+..|+...|.. +..
T Consensus       102 tfngHK~AVt~l~fd~-~G~rlaSGskDt~IIvwDlV~E~G------------l~-----rL~GHkd~iT~~~F~~-~~~  162 (888)
T KOG0306|consen  102 TFNGHKAAVTTLKFDK-IGTRLASGSKDTDIIVWDLVGEEG------------LF-----RLRGHKDSITQALFLN-GDS  162 (888)
T ss_pred             eecccccceEEEEEcc-cCceEeecCCCccEEEEEecccee------------eE-----EeecchHHHhHHhccC-CCe
Confidence            3568999999999985 577899999999999999853221            11     2358999998877765 467


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC-------------------
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-------------------  177 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl-------------------  177 (441)
                      +++|.|.|..||+||+++..+..+.- +.+.+..+++.+     .+++++..|+.+++|++                   
T Consensus       163 ~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G  237 (888)
T KOG0306|consen  163 FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRG  237 (888)
T ss_pred             EEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----ceEEEEecCCceEEEEeecccccccccccceeeccc
Confidence            99999999999999999888765432 233444444443     13444444555555554                   


Q ss_pred             --------------------------------------------------------------------------------
Q 013545          178 --------------------------------------------------------------------------------  177 (441)
Q Consensus       178 --------------------------------------------------------------------------------  177 (441)
                                                                                                      
T Consensus       238 ~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i  317 (888)
T KOG0306|consen  238 TFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI  317 (888)
T ss_pred             eeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe
Confidence                                                                                            


Q ss_pred             ----------------------------------CC-Cce------e--eeecCCCCCeEEEEEecCCCcEEEEeecCCc
Q 013545          178 ----------------------------------AS-GAI------S--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGA  214 (441)
Q Consensus       178 ----------------------------------~~-~~~------~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~  214 (441)
                                                        +. ++.      +  -++.||...|.++.||.++. +++|| ..++
T Consensus       318 r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~-~~~Sg-a~~S  395 (888)
T KOG0306|consen  318 RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI-LLASG-AGES  395 (888)
T ss_pred             echhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce-eeeec-CCCc
Confidence                                              21 100      0  13468999999999998864 45555 4679


Q ss_pred             EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc-CcccccCCCCccc-ccCCC
Q 013545          215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS-SVGRIPAKGSVRQ-RLHPG  292 (441)
Q Consensus       215 I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~  292 (441)
                      |+||+..+.+|++++.......        +...+                 ....+... ..|.      +.. .+...
T Consensus       396 ikiWn~~t~kciRTi~~~y~l~--------~~Fvp-----------------gd~~Iv~G~k~Ge------l~vfdlaS~  444 (888)
T KOG0306|consen  396 IKIWNRDTLKCIRTITCGYILA--------SKFVP-----------------GDRYIVLGTKNGE------LQVFDLASA  444 (888)
T ss_pred             EEEEEccCcceeEEeccccEEE--------EEecC-----------------CCceEEEeccCCc------eEEEEeehh
Confidence            9999999999999886542211        00000                 00000000 0000      000 00000


Q ss_pred             cccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC-------CceeeeeeeEEec-cCcceEEEeeCCCcE
Q 013545          293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-------RNTLVNFETVRLQ-TSKPIQLATTQDPAV  364 (441)
Q Consensus       293 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  364 (441)
                      ..  .-...+|.+.+.+++.+||++.+++||+|.+|++||..-.       +..+...++..+. .+...++.++||+.+
T Consensus       445 ~l--~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  445 SL--VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hh--hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            00  0113489999999999999999999999999999997521       1111111222222 355678899999999


Q ss_pred             EEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          365 VFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       365 ~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ++++-. .++++|-+.+-+....|.||.-||.|+.+|||++.++|||.|++|++|-++
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence            888755 689999999999999999999999999999999999999999999999776

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=5.2e-31  Score=227.92  Aligned_cols=300  Identities=22%  Similarity=0.380  Sum_probs=226.3

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCC------cccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRA------TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  111 (441)
                      .++.|.+.+.+.+|++ +|.+++|||.|-.|+|.|++..      +....+ ..+...+++    ++++.|..+|+++.|
T Consensus       107 ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~-~~qa~hPvI----RTlYDH~devn~l~F  180 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISG-DTQARHPVI----RTLYDHVDEVNDLDF  180 (430)
T ss_pred             EEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccC-CcccCCceE----eehhhccCcccceee
Confidence            4678999999999996 6889999999999999999732      111111 111222332    456789999999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCCeEE---EEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee---
Q 013545          112 YPVDTGLFVTGSYDHYVKVWDTNCTRVV---MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---  185 (441)
Q Consensus       112 ~~~~~~~l~sgs~D~~i~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~---  185 (441)
                      +|. ..+|+||+.|++||++|.......   ..++-...+.++.|+|.+   .+|++|.....+++||++|-++...   
T Consensus       181 HPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG---efllvgTdHp~~rlYdv~T~QcfvsanP  256 (430)
T KOG0640|consen  181 HPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG---EFLLVGTDHPTLRLYDVNTYQCFVSANP  256 (430)
T ss_pred             cch-hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC---ceEEEecCCCceeEEeccceeEeeecCc
Confidence            984 669999999999999998654322   223334568888898854   4788898888999999999876433   


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      -.+|++.|++|.+++.++ +.+++|.||.|||||=-+++|++++.                                   
T Consensus       257 d~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~-----------------------------------  300 (430)
T KOG0640|consen  257 DDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG-----------------------------------  300 (430)
T ss_pred             ccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH-----------------------------------
Confidence            247999999999999997 67999999999999977777766542                                   


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeec-cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeee
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE  344 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~  344 (441)
                                                         .+|. ..|.+..|..+|+||++.+.|..+++|.+.+++.... +.
T Consensus       301 -----------------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~-Yt  344 (430)
T KOG0640|consen  301 -----------------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE-YT  344 (430)
T ss_pred             -----------------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE-Ee
Confidence                                               1343 3589999999999999999999999999999874322 21


Q ss_pred             eE--EeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          345 TV--RLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       345 ~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      .-  ...+....+..+...-.+++.+-  ...+-.||..+...+..+ .||.+.+.++.-||.+--++|||.|..+|.|-
T Consensus       345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            10  00111122344555555555553  357888999887655443 58999999999999999999999999999994

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=1.4e-30  Score=230.87  Aligned_cols=279  Identities=20%  Similarity=0.374  Sum_probs=214.6

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC--CCEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD--TGLF  119 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~--~~~l  119 (441)
                      |...|.++...   +++|+||+.||+++|||.+...             +     ....||+++|.++++...+  ...|
T Consensus       104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~-------------~-----~~~~Ght~~ik~v~~v~~n~~~~~f  162 (423)
T KOG0313|consen  104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKS-------------I-----KTIVGHTGPIKSVAWVIKNSSSCLF  162 (423)
T ss_pred             chhhhhhhccc---CceEEEeecCCeeEEEecCCce-------------E-----EEEecCCcceeeeEEEecCCccceE
Confidence            88899999885   4699999999999999986321             1     1234899999988885543  3469


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEE-----ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC----------------
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNF-----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA----------------  178 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~----------------  178 (441)
                      +++|.|.++++|..+.+......     .+...+.++...++   ...+++|+.|..|++|+.+                
T Consensus       163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s---gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk  239 (423)
T KOG0313|consen  163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS---GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK  239 (423)
T ss_pred             EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC---CCeEEeecccceeeecccCCCccccccccchhhhh
Confidence            99999999999988765532211     23344666665553   4589999999999999932                


Q ss_pred             ---------CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccc
Q 013545          179 ---------SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLS  249 (441)
Q Consensus       179 ---------~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (441)
                               ++.++-++.||.+.|.+|.|++..  .+.|+|+|.+|+.||+.++++...+..                  
T Consensus       240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~~------------------  299 (423)
T KOG0313|consen  240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLTT------------------  299 (423)
T ss_pred             hhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeeec------------------
Confidence                     122455789999999999999854  578999999999999988765433211                  


Q ss_pred             cCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545          250 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR  329 (441)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  329 (441)
                                                                            ..++++++.+|...+|++|+.|.-+|
T Consensus       300 ------------------------------------------------------~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  300 ------------------------------------------------------NKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             ------------------------------------------------------CcceeEeecccccceeeecCCCCcee
Confidence                                                                  12478999999999999999999999


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCc-eEeeecccccceEEEEEcCCCCeE
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSSQDQEL  406 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~-~~~~l~gh~~~v~~v~fspd~~~l  406 (441)
                      +||++++...... ..+..+.+-...+.++|...+.++.+  .+.+++||+.+-+ .+..+.+|.+.|.++.|+ ++..+
T Consensus       326 l~DPR~~~gs~v~-~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I  403 (423)
T KOG0313|consen  326 LWDPRTGDGSVVS-QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI  403 (423)
T ss_pred             ecCCCCCCCceeE-EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence            9999987543322 23333445556677888777666543  3689999998877 899999999999999999 46799


Q ss_pred             EEeecCCcEEEeCC
Q 013545          407 YTGGNDRQILVWCP  420 (441)
Q Consensus       407 ~s~s~D~~i~vW~~  420 (441)
                      +|||.|.+|+|+.-
T Consensus       404 vSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  404 VSGGADNKLRIFKG  417 (423)
T ss_pred             EeccCcceEEEecc
Confidence            99999999999854

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.6e-30  Score=213.17  Aligned_cols=283  Identities=22%  Similarity=0.317  Sum_probs=223.0

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      .++..|.++|.++.|+. +|+|.+|++.|.+||+||...+...                 .+..||..+|..+..+. |.
T Consensus        11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~li-----------------ktYsghG~EVlD~~~s~-Dn   71 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALI-----------------KTYSGHGHEVLDAALSS-DN   71 (307)
T ss_pred             eeecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccccee-----------------eeecCCCceeeeccccc-cc
Confidence            35678999999999985 6899999999999999998766431                 23357888899888776 67


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC--ceeeeecCCCCCe
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG--AISQTLSGHRDGI  193 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~--~~~~~l~~h~~~v  193 (441)
                      ..|++||.|+.|.+||+++|++++.+.. .+++..+.|...   ..+++||+.|.++++||..+.  ++++.+....+.|
T Consensus        72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee---sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V  148 (307)
T KOG0316|consen   72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE---SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV  148 (307)
T ss_pred             cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc---ceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence            7999999999999999999999998874 467777777653   458999999999999999764  6889999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      ++|....   ..+++||.||++|.||+|.+.....+                                            
T Consensus       149 ~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy--------------------------------------------  181 (307)
T KOG0316|consen  149 SSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY--------------------------------------------  181 (307)
T ss_pred             eEEEecc---cEEEeeccCCcEEEEEeecceeehhh--------------------------------------------
Confidence            9999874   35789999999999999976321100                                            


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                   -..+|++++|++|++.++.++-|+++|+.|-++++.... +.... ...-.
T Consensus       182 -----------------------------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s-YkGhk-n~eyk  230 (307)
T KOG0316|consen  182 -----------------------------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS-YKGHK-NMEYK  230 (307)
T ss_pred             -----------------------------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH-hcccc-cceee
Confidence                                         124699999999999999999999999999998874221 11110 01112


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc-eEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~-v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ....+....+.+++++. +.+..||+.+...+..++.|... |.+++++|.-..|+++. ++.+..|-.
T Consensus       231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             eeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence            33455566667777655 67999999999999999999988 89999999877777764 555666743

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.1e-31  Score=231.27  Aligned_cols=249  Identities=22%  Similarity=0.390  Sum_probs=197.7

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      .||..+|+.+.++| +-.+++++++|.+|++||..+++++..++. ...+.++.++..+   .+|++++.|-.+++||.+
T Consensus       105 ~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G---k~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG---KYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             hccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc---cEEEecCCccchhheeHH
Confidence            47999999999887 677899999999999999999998766553 3447777777644   589999999999999998


Q ss_pred             C-CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          179 S-GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       179 ~-~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      + ..+++.+.+|...|.++.|-|-|.+ ++|++.|.+|+.||+.++-|+.++                            
T Consensus       181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~----------------------------  231 (406)
T KOG0295|consen  181 TFFRCIKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF----------------------------  231 (406)
T ss_pred             HHHHHHHHhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEEec----------------------------
Confidence            7 4677888999999999999999985 689999999999999988776543                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                 .+|...|.-++.+.||..+++++.|.+|++|-+.+++
T Consensus       232 -------------------------------------------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~  268 (406)
T KOG0295|consen  232 -------------------------------------------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ  268 (406)
T ss_pred             -------------------------------------------cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch
Confidence                                                       3566789999999999999999999999999998862


Q ss_pred             c--eee----eeeeEEecc---CcceEEEe-eCCC-cEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCe
Q 013545          338 N--TLV----NFETVRLQT---SKPIQLAT-TQDP-AVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE  405 (441)
Q Consensus       338 ~--~~~----~~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~  405 (441)
                      .  .+-    ..+.+...+   ...+.-+. +.++ ..++++.. .++|+||+.++.++-+|.||..+|..++|+|.|++
T Consensus       269 ~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gky  348 (406)
T KOG0295|consen  269 CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKY  348 (406)
T ss_pred             hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeE
Confidence            1  110    011111111   01111111 1122 24444444 58999999999999999999999999999999999


Q ss_pred             EEEeecCCcEEEeCCCCCC
Q 013545          406 LYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       406 l~s~s~D~~i~vW~~~~~~  424 (441)
                      |+|+.+|+++|+||..+.+
T Consensus       349 i~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  349 ILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             EEEEecCCcEEEEEeccce
Confidence            9999999999999998654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=249.76  Aligned_cols=253  Identities=25%  Similarity=0.471  Sum_probs=207.7

Q ss_pred             cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe--EEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC-
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-  177 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl-  177 (441)
                      |...|.++.+++ ++..+++++.|+.+++|+.....  .+... .+...+..+.|++++.   ++++++.|++|++||+ 
T Consensus       158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceEEEeecc
Confidence            477899988887 78899999999999999996665  33333 2344578889998654   8999999999999999 


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ..+..++++.||...|++++|+|+++ +++||+.|++|||||+++++|...+                            
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l----------------------------  284 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKL----------------------------  284 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEee----------------------------
Confidence            55688999999999999999999995 7899999999999999987766544                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                 .+|.+.|++++|++++.+|++++.|++|++||+.++.
T Consensus       285 -------------------------------------------~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  285 -------------------------------------------KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             -------------------------------------------eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence                                                       4678889999999999999999999999999999987


Q ss_pred             ceeeeeeeEEeccC--cceEEEeeCCCcEEEEeCCC-ceEEEEccCCceEeeecccccc---eEEEEEcCCCCeEEEeec
Q 013545          338 NTLVNFETVRLQTS--KPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEY---VNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       338 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~~~---v~~v~fspd~~~l~s~s~  411 (441)
                      ..  ....+.....  ....+.+++++.+++++..+ .+++||+.+++....+.+|...   +.+..++++++++++|+.
T Consensus       322 ~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~  399 (456)
T KOG0266|consen  322 KL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE  399 (456)
T ss_pred             ee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence            32  0111111111  34667888999999998875 8999999999999999999884   455566789999999999


Q ss_pred             CCcEEEeCCCCCCCCCccCCc
Q 013545          412 DRQILVWCPSRHISDGVDAGP  432 (441)
Q Consensus       412 D~~i~vW~~~~~~~~~~~~~~  432 (441)
                      |+.|.+|++++......+.|-
T Consensus       400 d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  400 DGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             CceEEEEeCCccchhhhhcCC
Confidence            999999999976555444443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-29  Score=246.34  Aligned_cols=321  Identities=17%  Similarity=0.285  Sum_probs=242.9

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      +..|-.|+|+|. .-+++++=-.|.|++||...++..+                 -+.+|.++|..+.|+| ..++|+||
T Consensus         9 SsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~-----------------rFdeHdGpVRgv~FH~-~qplFVSG   69 (1202)
T KOG0292|consen    9 SSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLID-----------------RFDEHDGPVRGVDFHP-TQPLFVSG   69 (1202)
T ss_pred             cccccceecCCC-CCEEEEeecCceeeeehhhhhhHHh-----------------hhhccCCccceeeecC-CCCeEEec
Confidence            577899999985 5689999999999999998765432                 1347999999999987 68899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      |+|-+|++|+.++.+++.++.. -..+..+.|++--   ..+.|+|.|-+|+||+.++++++..+.||..-|+|..|+|.
T Consensus        70 GDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey---PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen   70 GDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY---PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT  146 (1202)
T ss_pred             CCccEEEEEecccceehhhhccccceeEEeeccCCC---ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence            9999999999999888766543 3457777777643   48999999999999999999999999999999999999997


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      .+ +++|+|-|.+||+||+.-.+.      .....+         ++    ...+  +...     ++       ..+  
T Consensus       147 ED-lIVSaSLDQTVRVWDisGLRk------k~~~pg---------~~----e~~~--~~~~-----~~-------~dL--  190 (1202)
T KOG0292|consen  147 ED-LIVSASLDQTVRVWDISGLRK------KNKAPG---------SL----EDQM--RGQQ-----GN-------SDL--  190 (1202)
T ss_pred             cc-eEEEecccceEEEEeecchhc------cCCCCC---------Cc----hhhh--hccc-----cc-------hhh--
Confidence            66 689999999999999853110      000000         00    0000  0000     00       000  


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD  361 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (441)
                      .+..+.       .....+.+|...|+-++|+|.-..|+||+.|+.|++|-+...+.  -...+.+.+.+....+.+.|.
T Consensus       191 fg~~Da-------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH~nnVssvlfhp~  261 (1202)
T KOG0292|consen  191 FGQTDA-------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGHYNNVSSVLFHPH  261 (1202)
T ss_pred             cCCcCe-------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--eeehhhhcccCCcceEEecCc
Confidence            000000       00112468988999999999999999999999999998875432  234455666777778888888


Q ss_pred             CcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545          362 PAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       362 ~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~  431 (441)
                      ..++++.+. ..+|+||+.....+.+|+--.+..|+++-+|..++++ +++|+-+.|+.+++.+...+.-|
T Consensus       262 q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleRErpa~~v~~  331 (1202)
T KOG0292|consen  262 QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLERERPAYAVNG  331 (1202)
T ss_pred             cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcccCceEEEcC
Confidence            888887765 6899999999999999998889999999999988777 55777778998887766555444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.3e-31  Score=228.64  Aligned_cols=298  Identities=15%  Similarity=0.239  Sum_probs=232.6

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      .+.-|..+-+-|..||| +++||+|||-||-|.+||..+++.... -..+..        ..+.-|..+|.|+.|+. |.
T Consensus       207 ~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKD-LkYQAq--------d~fMMmd~aVlci~FSR-Ds  275 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKD-LKYQAQ--------DNFMMMDDAVLCISFSR-DS  275 (508)
T ss_pred             heecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhh-hhhhhh--------cceeecccceEEEeecc-cH
Confidence            34446677899999997 688999999999999999877653110 000011        11223667899998887 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      +++|||+.||.|++|.+.+|.+++.|.  +...+.++.|+.+.   ..+.+++-|.++++..+++|++++.++||.+-|.
T Consensus       276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~---SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN---SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc---chhhcccccceEEEeccccchhHHHhcCcccccc
Confidence            899999999999999999999998776  34567888888754   3577889999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      .+.|.++|.+ ++|+|.||+|++|+.++..|+.+++...                                         
T Consensus       353 ~a~ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~~-----------------------------------------  390 (508)
T KOG0275|consen  353 EATFTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPLG-----------------------------------------  390 (508)
T ss_pred             ceEEcCCCCe-EEEecCCccEEEecCcchhhhhhccCCC-----------------------------------------
Confidence            9999999986 5899999999999999988877664210                                         


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                  ..-+|+++-.-|.+ ..++.+....+|.+-++...-  ...+..-....+.-
T Consensus       391 ----------------------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv--VrsfsSGkREgGdF  440 (508)
T KOG0275|consen  391 ----------------------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV--VRSFSSGKREGGDF  440 (508)
T ss_pred             ----------------------------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE--EeeeccCCccCCce
Confidence                                        11235666666654 356677778888888876421  11122222223334


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      +..+.+|.|..++..+. ..+..|.+.+|++-.++.-|++.|-.++-+|..+.|||-++|+.+++|.+
T Consensus       441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP  508 (508)
T ss_pred             EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence            56788999999998876 46788999999999999999999999999999999999999999999975

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.6e-30  Score=213.20  Aligned_cols=241  Identities=18%  Similarity=0.385  Sum_probs=198.0

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      ..|.++|..+.+.- ||++.+|||.|++||+|++..+.+++++..+|. +...+.+.+   +..+++|+.|..|.+||++
T Consensus        14 ~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D---nskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD---NSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             cccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc---ccccccCCCCceEEEEEcc
Confidence            46888999888876 899999999999999999999999999987654 666666654   3469999999999999999


Q ss_pred             CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc--eeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      +|+.++.++||.+.|.++.|+.+.. +++|||.|.++|+||-|+..  ++++                            
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQi----------------------------  140 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQI----------------------------  140 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccch----------------------------
Confidence            9999999999999999999998875 78999999999999988631  0100                            


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                                 +....+.|.++.+.  +..|++||.||++|.||++.+
T Consensus       141 -------------------------------------------ldea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G  175 (307)
T KOG0316|consen  141 -------------------------------------------LDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG  175 (307)
T ss_pred             -------------------------------------------hhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc
Confidence                                                       11123457777775  678999999999999999987


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc--eEEEEEcCCCCeEEEeecCC
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~--v~~v~fspd~~~l~s~s~D~  413 (441)
                      +...      .....+..++.+++|+...++++. +++++.|-.+|+++..+.||...  =.+++|+.....+++||+||
T Consensus       176 ~l~s------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG  249 (307)
T KOG0316|consen  176 TLSS------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG  249 (307)
T ss_pred             eeeh------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc
Confidence            6321      222345567889999988777765 68999999999999999999863  45677888889999999999


Q ss_pred             cEEEeCCCCCC
Q 013545          414 QILVWCPSRHI  424 (441)
Q Consensus       414 ~i~vW~~~~~~  424 (441)
                      .|.+||+-...
T Consensus       250 ~Vy~wdLvd~~  260 (307)
T KOG0316|consen  250 KVYFWDLVDET  260 (307)
T ss_pred             eEEEEEeccce
Confidence            99999987554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.3e-29  Score=240.41  Aligned_cols=338  Identities=17%  Similarity=0.281  Sum_probs=239.4

Q ss_pred             ceeEEEccCCCC--cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           45 SINSLQVDLTEE--RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        45 ~V~~l~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      .+-++++.|.++  +.|++ -.+.++..|.+.........+        .....-...||...|.+++++. +...++||
T Consensus       322 kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~--------~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sg  391 (888)
T KOG0306|consen  322 KIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEA--------DRTSNIEIGGHRSDVRSLCVSS-DSILLASG  391 (888)
T ss_pred             heeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccc--------cccceeeeccchhheeEEEeec-Cceeeeec
Confidence            366666665433  24555 567888888876411110000        0011123459999999999986 55566666


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      + .+.|++|+..+.++++++... .+.+..|.|   ++.+++.|..+|.+.+||+.+..++.+++.|.+.+++++.+||+
T Consensus       392 a-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp---gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~  466 (888)
T KOG0306|consen  392 A-GESIKIWNRDTLKCIRTITCG-YILASKFVP---GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN  466 (888)
T ss_pred             C-CCcEEEEEccCcceeEEeccc-cEEEEEecC---CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC
Confidence            4 468999999999999998866 455555665   34688999999999999999999999999999999999999999


Q ss_pred             CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      +. +++||.|.+|++||...-.   . ++..+     ...           .............+..++.++|++++.+-
T Consensus       467 ~g-~vT~saDktVkfWdf~l~~---~-~~gt~-----~k~-----------lsl~~~rtLel~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  467 KG-FVTGSADKTVKFWDFKLVV---S-VPGTQ-----KKV-----------LSLKHTRTLELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             Cc-eEEecCCcEEEEEeEEEEe---c-cCccc-----cee-----------eeeccceEEeccccEEEEEEcCCCcEEEE
Confidence            86 6899999999999975210   0 00000     000           00000000111223345777888877665


Q ss_pred             CCcccccC---CCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          283 GSVRQRLH---PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       283 ~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                      +.++..+.   -..+.....+.+|.=||.+|++|||++.++|||+|++|++|-+.-|...    ..+-.+.+..+.+.+.
T Consensus       526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH----KS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH----KSFFAHDDSVMSVQFL  601 (888)
T ss_pred             EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh----hhhhcccCceeEEEEc
Confidence            55443321   1111222345789999999999999999999999999999988766432    1222345677788888


Q ss_pred             CCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          360 QDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       360 ~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      |.....++++- ..+|.||-.+.++..+|.||...|+|++.+|+|.+++|+|.|.+||+|....
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            86555555443 5799999999999999999999999999999999999999999999997654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1e-29  Score=238.16  Aligned_cols=254  Identities=19%  Similarity=0.347  Sum_probs=209.5

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      +.+..|+..|-++.|+|. ..+++++=..|.+.|||.++....         +++        .--..+|.++.|.. ..
T Consensus         7 rk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmV---------ksf--------eV~~~PvRa~kfia-Rk   67 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMV---------KSF--------EVSEVPVRAAKFIA-RK   67 (794)
T ss_pred             hHhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceee---------eee--------eecccchhhheeee-cc
Confidence            344568899999999986 568999999999999998765421         111        11223566677765 46


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIM  194 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~  194 (441)
                      +.+++|++|..||+++..+++.+.+|.. +.-+++++.+|..   .++.++|.|-.|++||-+.. .+.+++.||..-|+
T Consensus        68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM  144 (794)
T KOG0276|consen   68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM  144 (794)
T ss_pred             ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence            7899999999999999999999999875 5568888888854   58899999999999999876 67889999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      +|+|.|.+...|||+|-|++|++|.+.+..+..                                               
T Consensus       145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf-----------------------------------------------  177 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF-----------------------------------------------  177 (794)
T ss_pred             EEEecCCCccceeeeeccccEEEEEcCCCCCce-----------------------------------------------
Confidence            999999988789999999999999986432211                                               


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                              .+.+|...|++|++-+.|  .||+||+.|.+|++||..+.                
T Consensus       178 ------------------------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----------------  217 (794)
T KOG0276|consen  178 ------------------------TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----------------  217 (794)
T ss_pred             ------------------------eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH----------------
Confidence                                    235788889999998755  69999999999999998753                


Q ss_pred             ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545          353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                                                   .++.+|.||...|+.+.|+|.=..++|||+||++|||...+.++.-+
T Consensus       218 -----------------------------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t  264 (794)
T KOG0276|consen  218 -----------------------------SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT  264 (794)
T ss_pred             -----------------------------HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence                                         34567899999999999999999999999999999999998887643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=7e-29  Score=243.58  Aligned_cols=282  Identities=23%  Similarity=0.391  Sum_probs=223.6

Q ss_pred             ecC-CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           39 VSP-HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        39 ~~~-H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      +.+ |...+.++.|.   .+++++++.|++|++||..++...                .....||.+.|.++.+.. .++
T Consensus       203 ~~~~~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i----------------~~~l~GH~g~V~~l~~~~-~~~  262 (537)
T KOG0274|consen  203 LLGTDDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLI----------------LTRLVGHFGGVWGLAFPS-GGD  262 (537)
T ss_pred             ecccCcchhhhheee---cCeEEecCCCceeEEeecccceEE----------------EeeccCCCCCceeEEEec-CCC
Confidence            344 55789999997   347999999999999998765421                122469999999998865 578


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      ++++|+.|.++|+||+.++.+...+.. .+.+..+...+     ..+++|+.|.+|++|+++++.++..+.+|.+.|.++
T Consensus       263 ~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  263 KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            999999999999999999999998884 44555555444     367888999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      .+.  +. ++++|+.|++|++||+++++|+..+                                               
T Consensus       338 ~~~--~~-~lvsgs~d~~v~VW~~~~~~cl~sl-----------------------------------------------  367 (537)
T KOG0274|consen  338 QLD--EP-LLVSGSYDGTVKVWDPRTGKCLKSL-----------------------------------------------  367 (537)
T ss_pred             Eec--CC-EEEEEecCceEEEEEhhhceeeeee-----------------------------------------------
Confidence            998  33 6899999999999999987776543                                               


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC-CceeeeeeeEEeccCcceE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-RNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~  355 (441)
                                              .+|.+.|.++.+.+. ..+++|+.|++|++||+.+. +..    .+...+....  
T Consensus       368 ------------------------~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~----~tl~~h~~~v--  416 (537)
T KOG0274|consen  368 ------------------------SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI----HTLQGHTSLV--  416 (537)
T ss_pred             ------------------------cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh----hhhcCCcccc--
Confidence                                    468889999988766 89999999999999999987 321    1111111111  


Q ss_pred             EEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545          356 LATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                      ......+..+++... +.+++||..++++++++.+ |...|..+++.  ...+++++.|+++++||++++...+.
T Consensus       417 ~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~  489 (537)
T KOG0274|consen  417 SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT  489 (537)
T ss_pred             cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence            112223445555444 6799999999999999999 77899999987  45788899999999999998886653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.5e-29  Score=240.82  Aligned_cols=271  Identities=23%  Similarity=0.347  Sum_probs=196.8

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC--------------CCC----------ce----------
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE--------------GGG----------HI----------   85 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~--------------~~~----------~~----------   85 (441)
                      .+|.++|+++.||+ +|+|||||+.|+.|+||.+...+.+.              ..+          .+          
T Consensus       264 ~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~  342 (712)
T KOG0283|consen  264 NAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG  342 (712)
T ss_pred             cccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence            38999999999996 69999999999999999986511000              000          00          


Q ss_pred             ------eccceeEEeec---ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccC
Q 013545           86 ------AKHRSVFVVDK---QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL  156 (441)
Q Consensus        86 ------~~~~~~~~~~~---~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  156 (441)
                            .....++.+..   ..+.||.+.|.++.|+.  .++|+|+|.|+|||+|++....++..|.++..|.+++|+|.
T Consensus       343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             cCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence                  00000111111   13469999999999985  57999999999999999999999999999999999999997


Q ss_pred             CCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccc
Q 013545          157 AASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (441)
Q Consensus       157 ~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~  236 (441)
                      .  +.++++|+.|+.|+||++...+...-. .-...|+++.|.|+|++ .+.|+-+|.+++|+++..+.........   
T Consensus       421 D--DryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~---  493 (712)
T KOG0283|consen  421 D--DRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRL---  493 (712)
T ss_pred             C--CCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEee---
Confidence            4  468999999999999999877654332 33488999999999996 5789999999999988654332221100   


Q ss_pred             cCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC
Q 013545          237 GRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG  316 (441)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  316 (441)
                                                                           ..      .....|. .|+++.|.|..
T Consensus       494 -----------------------------------------------------~~------~Kk~~~~-rITG~Q~~p~~  513 (712)
T KOG0283|consen  494 -----------------------------------------------------HN------KKKKQGK-RITGLQFFPGD  513 (712)
T ss_pred             -----------------------------------------------------cc------CccccCc-eeeeeEecCCC
Confidence                                                                 00      0011233 69999999765


Q ss_pred             C-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc--cc
Q 013545          317 M-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY--EY  393 (441)
Q Consensus       317 ~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~--~~  393 (441)
                      . .|+..++|.+|||+|.+.....                                             ..|+|+.  ..
T Consensus       514 ~~~vLVTSnDSrIRI~d~~~~~lv---------------------------------------------~KfKG~~n~~S  548 (712)
T KOG0283|consen  514 PDEVLVTSNDSRIRIYDGRDKDLV---------------------------------------------HKFKGFRNTSS  548 (712)
T ss_pred             CCeEEEecCCCceEEEeccchhhh---------------------------------------------hhhcccccCCc
Confidence            4 5777899999999998643311                                             1111111  11


Q ss_pred             eEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          394 VNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       394 v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      -....|+.||++|++|++|..|.||+.+...+
T Consensus       549 Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~  580 (712)
T KOG0283|consen  549 QISASFSSDGKHIVSASEDSWVYIWKNDSFNS  580 (712)
T ss_pred             ceeeeEccCCCEEEEeecCceEEEEeCCCCcc
Confidence            34557999999999999999999999865443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=9.4e-29  Score=224.43  Aligned_cols=275  Identities=20%  Similarity=0.325  Sum_probs=207.5

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      -.|.++|+.+.+.|.+...++|++..+.|.|||..+.......  ....++-+     .+.||++.-..+.|++.....|
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~--~~~~~Pdl-----~L~gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA--SGECRPDL-----RLKGHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc--cccCCCce-----EEEeecccccccccccccceeE
Confidence            4799999999999988889999999999999998754332110  00111111     2347887666789988888899


Q ss_pred             EEEeCCCcEEEEECCCCeE-------EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC--CCceeeeecCC
Q 013545          120 VTGSYDHYVKVWDTNCTRV-------VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--SGAISQTLSGH  189 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~--~~~~~~~l~~h  189 (441)
                      ++|+.|++|++||+.....       ...+. +...+..++|++..  ..++++++.|+.+.|||++  +.++.....+|
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h--~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah  271 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH--EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH  271 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc--hhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence            9999999999999865432       12222 34557788888864  4589999999999999999  55667788899


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      .+.|.|++|+|-+..+|||||.|++|++||+|+.+.                                            
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------------------------------------------  307 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------------------------------------------  307 (422)
T ss_pred             CCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------------------------------------------
Confidence            999999999999999999999999999999986320                                            


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  348 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~  348 (441)
                                                ....+.+|.+.|..|.|||.. ..|||++.|+++.+||+..-.....   . ..
T Consensus       308 --------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~---~-ed  357 (422)
T KOG0264|consen  308 --------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS---P-ED  357 (422)
T ss_pred             --------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC---h-hh
Confidence                                      001135788999999999986 5688999999999999985221100   0 00


Q ss_pred             ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCe-EEEeecCCcEEEeCCCCCC
Q 013545          349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~~~~  424 (441)
                      ....+.                           +++-...||...|.++.|+|..-+ ++|+++|+.++||.+....
T Consensus       358 a~dgpp---------------------------EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i  407 (422)
T KOG0264|consen  358 AEDGPP---------------------------ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI  407 (422)
T ss_pred             hccCCc---------------------------ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence            011121                           223345789999999999999877 6699999999999998554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=3.8e-30  Score=230.05  Aligned_cols=248  Identities=23%  Similarity=0.364  Sum_probs=180.7

Q ss_pred             cceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeeccccc-CcccceeEEEEe
Q 013545           34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH-GHKYAISSAIWY  112 (441)
Q Consensus        34 ~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~  112 (441)
                      +|+.++..|...|.++.++ .++.+++||+.||.|++|+......                  +..+ .|..+|.+++|+
T Consensus       129 nFEtilQaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmnnV------------------k~~~ahh~eaIRdlafS  189 (464)
T KOG0284|consen  129 NFETILQAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMNNV------------------KIIQAHHAEAIRDLAFS  189 (464)
T ss_pred             eHHHHhhhhcccceeEEEc-cCCCEEEEcCCCceEEecccchhhh------------------HHhhHhhhhhhheeccC
Confidence            4566788899999999998 4788999999999999998753211                  0112 355899999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545          113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (441)
Q Consensus       113 ~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~  191 (441)
                      |. ...|+|||+|++|+|||....+....+..++ .+.++.++|.   ..++|+|+.|+.|++||.+++.++.++.+|..
T Consensus       190 pn-DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~---kgLiasgskDnlVKlWDprSg~cl~tlh~HKn  265 (464)
T KOG0284|consen  190 PN-DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT---KGLIASGSKDNLVKLWDPRSGSCLATLHGHKN  265 (464)
T ss_pred             CC-CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---cceeEEccCCceeEeecCCCcchhhhhhhccc
Confidence            94 5589999999999999998877766665443 4778888884   35899999999999999999999999999999


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC--CCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR--PPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      .|+.+.|+|++.+ |+|+|.|..++++|+|+-+.+.++..+...+...  .|+....                 ++    
T Consensus       266 tVl~~~f~~n~N~-Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l-----------------ft----  323 (464)
T KOG0284|consen  266 TVLAVKFNPNGNW-LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL-----------------FT----  323 (464)
T ss_pred             eEEEEEEcCCCCe-eEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc-----------------ee----
Confidence            9999999999975 7899999999999999655444443322211100  0000000                 00    


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                        ....++      .+................+|.+.|.+|+++|-|..|++|+.|.++++|.-.
T Consensus       324 --sgg~Dg------svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  324 --SGGSDG------SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             --eccCCC------ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence              000001      111111110011112346899999999999999999999999999999643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.6e-27  Score=251.00  Aligned_cols=246  Identities=15%  Similarity=0.277  Sum_probs=189.4

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC----e----EEEEEecCCeeEEEeeccCCCCccEEEEEeCCC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----R----VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV  170 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~  170 (441)
                      ..+|...|.++.|++ ++++|||||.|++|+|||+...    .    +...+.....+..+.+++..  ..+|++++.|+
T Consensus       479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~las~~~Dg  555 (793)
T PLN00181        479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYI--KSQVASSNFEG  555 (793)
T ss_pred             ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCC--CCEEEEEeCCC
Confidence            346899999999987 7899999999999999997531    1    12223334456677776642  35799999999


Q ss_pred             cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      .|++||+++++.+..+.+|.+.|++++|+|.+..+|+||+.|++|++||++++.++..+.                    
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------------------  615 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--------------------  615 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--------------------
Confidence            999999999999999999999999999997433468999999999999998754433221                    


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc-cCCCEEEEeecCCcEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGSDSRIR  329 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~D~~i~  329 (441)
                                                                          +...|.++.|+ ++|.+|++|+.|++|+
T Consensus       616 ----------------------------------------------------~~~~v~~v~~~~~~g~~latgs~dg~I~  643 (793)
T PLN00181        616 ----------------------------------------------------TKANICCVQFPSESGRSLAFGSADHKVY  643 (793)
T ss_pred             ----------------------------------------------------cCCCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence                                                                11347888995 5799999999999999


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccC------CceEeeecccccceEEEEEcCC
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWS------GKTCLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~------~~~~~~l~gh~~~v~~v~fspd  402 (441)
                      +||+.+.+...   .....+......+.+. ++..+++++ .+.+++||+..      ++.+.++.+|...+++++|+|+
T Consensus       644 iwD~~~~~~~~---~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~  719 (793)
T PLN00181        644 YYDLRNPKLPL---CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS  719 (793)
T ss_pred             EEECCCCCccc---eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence            99998754211   1112223334455555 555665554 47899999864      3577899999999999999999


Q ss_pred             CCeEEEeecCCcEEEeCCCCC
Q 013545          403 DQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       403 ~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      +++|++|+.|++|++|+....
T Consensus       720 ~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        720 DGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CCEEEEEeCCCEEEEEECCCC
Confidence            999999999999999997644

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-28  Score=238.70  Aligned_cols=247  Identities=22%  Similarity=0.350  Sum_probs=203.8

Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~  182 (441)
                      ..|..+.|+| ....++++=..|.|++||-+-+.++..|. +.|++..+.|+|..   .+++||+.|..|+||+.++.++
T Consensus        10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q---plFVSGGDDykIkVWnYk~rrc   85 (1202)
T KOG0292|consen   10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ---PLFVSGGDDYKIKVWNYKTRRC   85 (1202)
T ss_pred             ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC---CeEEecCCccEEEEEeccccee
Confidence            3566788887 57899999999999999999888887775 67999999999854   5999999999999999999999


Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      +.++.||.+-|..+.|++.-+|+ +|+|.|.+||||+..+.+|+.++                                 
T Consensus        86 lftL~GHlDYVRt~~FHheyPWI-lSASDDQTIrIWNwqsr~~iavl---------------------------------  131 (1202)
T KOG0292|consen   86 LFTLLGHLDYVRTVFFHHEYPWI-LSASDDQTIRIWNWQSRKCIAVL---------------------------------  131 (1202)
T ss_pred             hhhhccccceeEEeeccCCCceE-EEccCCCeEEEEeccCCceEEEE---------------------------------
Confidence            99999999999999999999884 79999999999999988887654                                 


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee-
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-  341 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~-  341 (441)
                                                            .+|.-.|+|..|+|....|+|+|-|.+||+||++..+.... 
T Consensus       132 --------------------------------------tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~  173 (1202)
T KOG0292|consen  132 --------------------------------------TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKA  173 (1202)
T ss_pred             --------------------------------------ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCC
Confidence                                                  46777899999999999999999999999999974321100 


Q ss_pred             ----------------ee--------eeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc--eEeeecccccce
Q 013545          342 ----------------NF--------ETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK--TCLTFRGHYEYV  394 (441)
Q Consensus       342 ----------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~--~~~~l~gh~~~v  394 (441)
                                      .+        .-+..+..+..-+++.|.--++++++. ..||+|.+..-+  ++.+.+||.+.|
T Consensus       174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV  253 (1202)
T KOG0292|consen  174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV  253 (1202)
T ss_pred             CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCc
Confidence                            00        011122333445667776677777776 479999985544  356889999999


Q ss_pred             EEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          395 NCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       395 ~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      +|+-|+|....++|.|+|++|||||++.....
T Consensus       254 ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  254 SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             ceEEecCccceeEecCCCccEEEEecccccce
Confidence            99999999999999999999999999866544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.5e-27  Score=205.46  Aligned_cols=254  Identities=19%  Similarity=0.297  Sum_probs=198.9

Q ss_pred             cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-eeEEEeeccCCCCccEEEE-EeCCCcEEEEECCC
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAA-GTEDVQVRLCDIAS  179 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las-~s~d~~I~vwdl~~  179 (441)
                      -.+.|.++.|++ +|.++++++.|.+++|||..+++.+.++.... .+....|....  ..++.+ -..|.+|++.++.+
T Consensus        13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~--~~~i~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS--NTVIHSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC--ceEEEccCCCCCceEEEEeec
Confidence            345688888886 79999999999999999999999988776542 13334444322  223332 23488999999999


Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                      .++++.+.||...|.++..+|-++ .++|+|.|++||+||+|..+|...+..                            
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~----------------------------  140 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL----------------------------  140 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec----------------------------
Confidence            999999999999999999999987 578999999999999997665433210                            


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC-Cc
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-RN  338 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~-~~  338 (441)
                                                                   ..-...+|.|.|-.+|++...+.|++||++.- +.
T Consensus       141 ---------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg  175 (311)
T KOG1446|consen  141 ---------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG  175 (311)
T ss_pred             ---------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence                                                         11224689999999999988889999999864 22


Q ss_pred             eeeeeeeEEec---cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce---EEEEEcCCCCeEEEeec
Q 013545          339 TLVNFETVRLQ---TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV---NCCCFSSQDQELYTGGN  411 (441)
Q Consensus       339 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v---~~v~fspd~~~l~s~s~  411 (441)
                      .   +.+..+.   ......+.+++||+.+++... +.+.+.|..+|....++.+|...-   -...|+||++++++|+.
T Consensus       176 P---F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  176 P---FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             C---ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence            2   2233332   234456889999998877655 678999999999999999887654   67899999999999999


Q ss_pred             CCcEEEeCCCCCCCCCccCCc-cCC
Q 013545          412 DRQILVWCPSRHISDGVDAGP-MQD  435 (441)
Q Consensus       412 D~~i~vW~~~~~~~~~~~~~~-~~~  435 (441)
                      ||+|.+|++++++......|| ++.
T Consensus       253 dg~i~vw~~~tg~~v~~~~~~~~~~  277 (311)
T KOG1446|consen  253 DGTIHVWNLETGKKVAVLRGPNGGP  277 (311)
T ss_pred             CCcEEEEEcCCCcEeeEecCCCCCC
Confidence            999999999999987787776 443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=207.52  Aligned_cols=303  Identities=17%  Similarity=0.265  Sum_probs=212.7

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ++.||.+.|++++|+ ++|++|+|++.|++|+||++...+..       .|+.+..   ...++|.   +.+.|.|.-..
T Consensus        81 ~LKgH~~~vt~~~Fs-SdGK~lat~~~Dr~Ir~w~~~DF~~~-------eHr~~R~---nve~dhp---T~V~FapDc~s  146 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFS-SDGKKLATISGDRSIRLWDVRDFENK-------EHRCIRQ---NVEYDHP---TRVVFAPDCKS  146 (420)
T ss_pred             hhhccCCceeeeEEc-CCCceeEEEeCCceEEEEecchhhhh-------hhhHhhc---cccCCCc---eEEEECCCcce
Confidence            467999999999998 68999999999999999999865421       2222110   1123454   34566664455


Q ss_pred             EEEEEeCCCcEEEEECCC---CeEEEEEe------cC----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          118 LFVTGSYDHYVKVWDTNC---TRVVMNFK------MP----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~---~~~~~~~~------~~----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      +++++-.-.++++|....   |.....+.      ++    -.+..+.+.   .+..+|++++.|..|.+|+++ |+.+.
T Consensus       147 ~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA---~~~k~imsas~dt~i~lw~lk-Gq~L~  222 (420)
T KOG2096|consen  147 VVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA---GNAKYIMSASLDTKICLWDLK-GQLLQ  222 (420)
T ss_pred             EEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec---CCceEEEEecCCCcEEEEecC-Cceee
Confidence            677777778899986531   22111110      01    011222222   245689999999999999998 88888


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR  264 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (441)
                      .+......-.-.+.||+|+ ++++++.--.|++|.+--++                                        
T Consensus       223 ~idtnq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~k----------------------------------------  261 (420)
T KOG2096|consen  223 SIDTNQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTK----------------------------------------  261 (420)
T ss_pred             eeccccccccceeeCCCCc-EEEEecCCCCceEEEEEecc----------------------------------------
Confidence            7766555556778899997 57888888999999853110                                        


Q ss_pred             cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc------
Q 013545          265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN------  338 (441)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~------  338 (441)
                        +|               .+..      ....-.+++|...|..++||++...++|.|.||++|+||+.-...      
T Consensus       262 --dG---------------~fqe------v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  262 --DG---------------TFQE------VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             --Cc---------------chhh------hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence              00               0000      000012568999999999999999999999999999999863210      


Q ss_pred             eeeeeeeEEe--ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcE
Q 013545          339 TLVNFETVRL--QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQI  415 (441)
Q Consensus       339 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i  415 (441)
                      .+.... ..+  ....++++..+|++..+++.....++++...+|+...++ +.|...|.|++|+|||++++|+| |+.+
T Consensus       319 ~Lk~g~-~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v  396 (420)
T KOG2096|consen  319 ILKEGS-APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYV  396 (420)
T ss_pred             HhhcCC-cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence            111110 111  235578999999999999999999999999999887766 47889999999999999999998 8888


Q ss_pred             EEeC-CCCCC
Q 013545          416 LVWC-PSRHI  424 (441)
Q Consensus       416 ~vW~-~~~~~  424 (441)
                      |+.. .+.++
T Consensus       397 rv~~ntpg~~  406 (420)
T KOG2096|consen  397 RVIRNTPGWH  406 (420)
T ss_pred             eeecCCCchh
Confidence            9885 55444

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=1.7e-27  Score=205.49  Aligned_cols=255  Identities=20%  Similarity=0.347  Sum_probs=205.0

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC-eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      ..||++.|..+.|.| ++..|||||.|+.|.+|++-.. +-....+ +.+.+..+.+..++   ..+.+++.|..++.||
T Consensus        43 l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~---s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG---SHILSCGTDKTVRGWD  118 (338)
T ss_pred             cCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC---CEEEEecCCceEEEEe
Confidence            358999999999998 8999999999999999996422 2223333 45668888887754   4788999999999999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      .++|+.++.+++|..-|.++.-+.-|..++.|++.|+++|+||+|+..++.+++.                         
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-------------------------  173 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-------------------------  173 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-------------------------
Confidence            9999999999999999999885555666888999999999999997544433211                         


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                                     .-.++++.|..++..+.+|+-|+.|++||+...
T Consensus       174 -----------------------------------------------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~  206 (338)
T KOG0265|consen  174 -----------------------------------------------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN  206 (338)
T ss_pred             -----------------------------------------------ceeEEEEEecccccceeeccccCceeeeccccC
Confidence                                                           123789999999999999999999999999876


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccC----CceEeeecccc----cceEEEEEcCCCCeEE
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWS----GKTCLTFRGHY----EYVNCCCFSSQDQELY  407 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~----~~~~~~l~gh~----~~v~~v~fspd~~~l~  407 (441)
                      ..    .+....+.+.+..++.++++..+.+-+. .++++||+.-    ..++..+.||.    .-...++|||++..+.
T Consensus       207 d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~  282 (338)
T KOG0265|consen  207 DG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT  282 (338)
T ss_pred             cc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence            53    3455566777888899999998887665 5899999843    34577888874    3467789999999999


Q ss_pred             EeecCCcEEEeCCCCCCCCCccCCcc
Q 013545          408 TGGNDRQILVWCPSRHISDGVDAGPM  433 (441)
Q Consensus       408 s~s~D~~i~vW~~~~~~~~~~~~~~~  433 (441)
                      .|+.|+.+.+||...-+..+.+-|-|
T Consensus       283 ags~dr~vyvwd~~~r~~lyklpGh~  308 (338)
T KOG0265|consen  283 AGSADRFVYVWDTTSRRILYKLPGHY  308 (338)
T ss_pred             cccccceEEEeecccccEEEEcCCcc
Confidence            99999999999998766666666654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=207.74  Aligned_cols=291  Identities=21%  Similarity=0.379  Sum_probs=219.3

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.||...|+.++... ....+.|+|.|.+.+||.++++.++.                 ...||.+.|+++.|++ .+.
T Consensus       143 e~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikfh~-s~~  203 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKFHN-SGL  203 (481)
T ss_pred             hhcccccceeeehhhc-CCcceeecccccceeEEeecccccee-----------------eecccccceeeEEecc-ccc
Confidence            4569999999998863 34589999999999999999887631                 2348999999999987 588


Q ss_pred             EEEEEeCCCcEEEEECC----CCe------------------------------------EEEEEecCCeeEEEeeccCC
Q 013545          118 LFVTGSYDHYVKVWDTN----CTR------------------------------------VVMNFKMPGKVYRTAMSPLA  157 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~----~~~------------------------------------~~~~~~~~~~~~~~~~~~~~  157 (441)
                      +++|+|.|++..||...    ..+                                    +++.++  ++...+..+..-
T Consensus       204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--gH~~vV~a~dWL  281 (481)
T KOG0300|consen  204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--GHRAVVSACDWL  281 (481)
T ss_pred             eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--ccccceEehhhh
Confidence            99999999999999611    000                                    000010  110001111111


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcccc
Q 013545          158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG  237 (441)
Q Consensus       158 ~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~  237 (441)
                      .+...+++++.|.+..+||+++|+++..+.||..+.+-+.-+|..+ +++++|.|.+.|+||+|..  +           
T Consensus       282 ~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRea--I-----------  347 (481)
T KOG0300|consen  282 AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREA--I-----------  347 (481)
T ss_pred             cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhh--c-----------
Confidence            2345678899999999999999999999999999999999999865 7899999999999998731  0           


Q ss_pred             CCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC
Q 013545          238 RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM  317 (441)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  317 (441)
                                                                               .....+.+|.+.|+++.|..|. 
T Consensus       348 ---------------------------------------------------------~sV~VFQGHtdtVTS~vF~~dd-  369 (481)
T KOG0300|consen  348 ---------------------------------------------------------QSVAVFQGHTDTVTSVVFNTDD-  369 (481)
T ss_pred             ---------------------------------------------------------ceeeeecccccceeEEEEecCC-
Confidence                                                                     0011246899999999998665 


Q ss_pred             EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEe----eeccccc
Q 013545          318 YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL----TFRGHYE  392 (441)
Q Consensus       318 ~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~----~l~gh~~  392 (441)
                      .+++||.|.+|++||+.+.+..+   .+++. .+....++.+....+++.+.. ..+|+||+.-..+..    .-+||..
T Consensus       370 ~vVSgSDDrTvKvWdLrNMRspl---ATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR  445 (481)
T KOG0300|consen  370 RVVSGSDDRTVKVWDLRNMRSPL---ATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR  445 (481)
T ss_pred             ceeecCCCceEEEeeeccccCcc---eeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence            68899999999999999876543   33332 345566777777778888876 579999996544322    4579999


Q ss_pred             ceEEEEEcCCC--CeEEEeecCCcEEEeCCCCCCC
Q 013545          393 YVNCCCFSSQD--QELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       393 ~v~~v~fspd~--~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      .|.|++|..+-  .-|+|||-|+.+.-|.+.++.+
T Consensus       446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~~  480 (481)
T KOG0300|consen  446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPTS  480 (481)
T ss_pred             eeeeeeccccCcccccccccccceeeeeEecccCC
Confidence            99999999764  3388999999999999887654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.5e-26  Score=195.95  Aligned_cols=288  Identities=17%  Similarity=0.267  Sum_probs=221.5

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      +.+.+|...|-+++|+ .+|..|++|+.|+++++|+++.....               .....+||.+.|.-++|.|+..
T Consensus        14 r~~~~~~~~v~Sv~wn-~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~   77 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWN-CDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHP   77 (313)
T ss_pred             HHhhhhhhcceEEEEc-ccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCC
Confidence            3456899999999998 56889999999999999999765321               1234568999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      ++|++++.|++|++||++.++++......+...-+.++|++   ..++++..|..|...|.++.+.....+ ..-.+.-+
T Consensus        78 d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~  153 (313)
T KOG1407|consen   78 DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI  153 (313)
T ss_pred             cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence            99999999999999999999999888877777777888864   478889999999999998877665543 45567788


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      .|+.++..+|++ ...|.|.|-.....+.+                                                  
T Consensus       154 ~w~~~nd~Fflt-~GlG~v~ILsypsLkpv--------------------------------------------------  182 (313)
T KOG1407|consen  154 SWNNSNDLFFLT-NGLGCVEILSYPSLKPV--------------------------------------------------  182 (313)
T ss_pred             eecCCCCEEEEe-cCCceEEEEeccccccc--------------------------------------------------
Confidence            888777655554 44678877654322111                                                  


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                           ...++|...-.+|.|+|+|+|+|+|++|..+.+||+...-    ....+....-+..++
T Consensus       183 ---------------------~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi----C~R~isRldwpVRTl  237 (313)
T KOG1407|consen  183 ---------------------QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI----CERCISRLDWPVRTL  237 (313)
T ss_pred             ---------------------cccccCCcceEEEEECCCCceEeeccccceeeccChhHhh----hheeeccccCceEEE
Confidence                                 1135677777889999999999999999999999997421    111222223345578


Q ss_pred             EeeCCCcEEEEeCCC-ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC---------CcEEEeCCC
Q 013545          357 ATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND---------RQILVWCPS  421 (441)
Q Consensus       357 ~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D---------~~i~vW~~~  421 (441)
                      +++.|+.++++++.. .+-|=++.+|..+..+. |+++...|+|+|...+||-+..|         +++|++-.+
T Consensus       238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            999999999888664 56666778888888877 88999999999998888866554         567776544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=196.85  Aligned_cols=208  Identities=23%  Similarity=0.354  Sum_probs=157.8

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---EEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcE
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQV  172 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I  172 (441)
                      ...+|++.+..++++|..|..|||||.|+.||+|+...+.   +...+.  +...+++++++|.+.   +||+||-|.++
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSFD~t~   85 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASFDATV   85 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeeccceE
Confidence            3468999999999998557789999999999999988432   222221  334588999999754   99999999999


Q ss_pred             EEEECCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          173 RLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       173 ~vwdl~~~--~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      -||.-..+  +++.+|.||..+|-|++|+++|. +||+||.|++|-||.+.....+...                     
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~---------------------  143 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECI---------------------  143 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEE---------------------
Confidence            99998766  56788999999999999999997 5899999999999988644322211                     


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                                                                     ..+..|...|-.+.|+|.-..|+|+|.|.+|++
T Consensus       144 -----------------------------------------------aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~  176 (312)
T KOG0645|consen  144 -----------------------------------------------AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKV  176 (312)
T ss_pred             -----------------------------------------------eeeccccccccEEEEcCCcceeEEeccCCeEEE
Confidence                                                           113457777889999999999999999999999


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s  410 (441)
                      |.-..+.                                          +..+..+|.+|+.-|++++|+|.|..|++++
T Consensus       177 ~~~~~dd------------------------------------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  177 YRDEDDD------------------------------------------DWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             EeecCCC------------------------------------------CeeEEEEecCccceEEEEEecCCCceEEEec
Confidence            9754211                                          1233445556666666666666666666666


Q ss_pred             cCCcEEEeC
Q 013545          411 NDRQILVWC  419 (441)
Q Consensus       411 ~D~~i~vW~  419 (441)
                      .|++++||.
T Consensus       215 dD~tv~Iw~  223 (312)
T KOG0645|consen  215 DDGTVSIWR  223 (312)
T ss_pred             CCcceEeee
Confidence            666666665

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=3.7e-28  Score=221.80  Aligned_cols=255  Identities=20%  Similarity=0.325  Sum_probs=194.8

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      ..||+.+|+++.|+|..+.+|+|+|.|+.|+||++-. +.+++++..+ ..+..+.++..+.   -+.+++-|..|++||
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDRFLKLWD  286 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecceeeeeec
Confidence            4699999999999998899999999999999999865 7888888754 4577777777643   578899999999999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      ++||+++..+.. ...+.|+.|+|++..+|++|+.|+.|+.||+|+++.++.+                           
T Consensus       287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---------------------------  338 (503)
T KOG0282|consen  287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---------------------------  338 (503)
T ss_pred             cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---------------------------
Confidence            999999887752 3456899999999778999999999999999986532211                           


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                                  ..|-+.|..+.|-++|.++++.+.|++++||+....
T Consensus       339 --------------------------------------------d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  339 --------------------------------------------DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             --------------------------------------------HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence                                                        135678999999999999999999999999998865


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC-ceEEEEccC---CceEeeecccc--cceEEEEEcCCCCeEEEee
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWS---GKTCLTFRGHY--EYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~---~~~~~~l~gh~--~~v~~v~fspd~~~l~s~s  410 (441)
                      -.... ....  ..-...++...|.+..++.-+.. .+-++.+..   ...-+.|.||.  +.-..|.|||||++|+||+
T Consensus       375 v~ik~-i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd  451 (503)
T KOG0282|consen  375 VPIKN-IADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD  451 (503)
T ss_pred             ccchh-hcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence            32110 0000  01112345566666665554443 445554322   22335788895  5678899999999999999


Q ss_pred             cCCcEEEeCCCCCCCCCccCC
Q 013545          411 NDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       411 ~D~~i~vW~~~~~~~~~~~~~  431 (441)
                      .||.+.+||..+-++-..+..
T Consensus       452 sdG~v~~wdwkt~kl~~~lka  472 (503)
T KOG0282|consen  452 SDGKVNFWDWKTTKLVSKLKA  472 (503)
T ss_pred             CCccEEEeechhhhhhhcccc
Confidence            999999999998876655443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.2e-27  Score=223.01  Aligned_cols=312  Identities=18%  Similarity=0.282  Sum_probs=231.7

Q ss_pred             CCCCceeEEEccCCC----------CcEEEEeeCCCcEEEEECCCCcc---cCCCCcee--ccceeEE------------
Q 013545           41 PHKGSINSLQVDLTE----------ERYLLSGASDSSVAVYDVQRATD---YEGGGHIA--KHRSVFV------------   93 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~----------~~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~~~--~~~~~~~------------   93 (441)
                      -|...|+.+..-|-+          ..-++|+|.|+|||+||+.....   |... .+.  ..+.++.            
T Consensus       367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRN-ils~~l~ki~y~d~~~q~~~d~~~  445 (1080)
T KOG1408|consen  367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRN-ILSANLSKIPYEDSTQQIMHDASA  445 (1080)
T ss_pred             eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecc-cchhhhhcCccccCchhhhhhccC
Confidence            377777776533311          12489999999999999875331   1100 000  0000010            


Q ss_pred             ----eecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeC
Q 013545           94 ----VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE  168 (441)
Q Consensus        94 ----~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~  168 (441)
                          .......+.+.++.+++++| ++++||+|..-|++|++|+..-+....+. ++..+.++.++.......+||+++-
T Consensus       446 ~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  446 GIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             CcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence                00112235677899999988 89999999999999999997666544443 4567888888876666789999999


Q ss_pred             CCcEEEEECCCC-ceeeeecCCCCCeEEEEEecCC-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545          169 DVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (441)
Q Consensus       169 d~~I~vwdl~~~-~~~~~l~~h~~~v~~v~fsp~~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (441)
                      |.-|+|||.... .+++++.+|...|++|.|..+| +..++|++.|+.|.+--.++...-+.+                 
T Consensus       525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f-----------------  587 (1080)
T KOG1408|consen  525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF-----------------  587 (1080)
T ss_pred             CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec-----------------
Confidence            999999999765 4678999999999999998775 345889999998875433211100000                 


Q ss_pred             ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC
Q 013545          247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  326 (441)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~  326 (441)
                                                        .               ..........+..|++.|..+++++++.|+
T Consensus       588 ----------------------------------~---------------r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr  618 (1080)
T KOG1408|consen  588 ----------------------------------P---------------RHTQTLSKTTLYDMAVDPTSKLVVTVCQDR  618 (1080)
T ss_pred             ----------------------------------c---------------ccccccccceEEEeeeCCCcceEEEEeccc
Confidence                                              0               000011124588999999999999999999


Q ss_pred             cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCe
Q 013545          327 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE  405 (441)
Q Consensus       327 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~  405 (441)
                      .|+|||+++++.. ..|+.-..+.+..+.+...|++-++++.|. .++-++|..+|+++.+..||...|+.|.|++|.++
T Consensus       619 nirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  619 NIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             ceEEEecccccee-eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence            9999999998753 334444445577888999999999998876 68999999999999999999999999999999999


Q ss_pred             EEEeecCCcEEEeCCC
Q 013545          406 LYTGGNDRQILVWCPS  421 (441)
Q Consensus       406 l~s~s~D~~i~vW~~~  421 (441)
                      |+|.+.|+.|.||.++
T Consensus       698 lISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKLP  713 (1080)
T ss_pred             heeecCCceEEEEECc
Confidence            9999999999999987

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=4.7e-26  Score=223.36  Aligned_cols=263  Identities=17%  Similarity=0.209  Sum_probs=185.1

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      |-..|+....++ ++..+++++.+..+..|+...+..............    ......||++.|.++.|+|.++.+|+|
T Consensus        19 ~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~----~~~~l~GH~~~V~~v~fsP~d~~~LaS   93 (493)
T PTZ00421         19 HFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLAS----NPPILLGQEGPIIDVAFNPFDPQKLFT   93 (493)
T ss_pred             ceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCC----CCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence            344566566654 344588999999999998754321100000000000    001235899999999999877889999


Q ss_pred             EeCCCcEEEEECCCCe-------EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          122 GSYDHYVKVWDTNCTR-------VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      ||.|++|++||+.++.       ++..+. +...+..+.|+|..  ..+|++|+.|+.|++||+++++.+..+.+|...|
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V  171 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI  171 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence            9999999999997642       233343 34568888898853  3589999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .+++|+|++. +|++++.|++|++||+++++....+                                            
T Consensus       172 ~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl--------------------------------------------  206 (493)
T PTZ00421        172 TSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSV--------------------------------------------  206 (493)
T ss_pred             EEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEE--------------------------------------------
Confidence            9999999987 5799999999999999976543322                                            


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEee----cCCcEEEeeCCCCCceeeeeeeEEe
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAG----SDSRIRLWDVESGRNTLVNFETVRL  348 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs----~D~~i~~wd~~~~~~~~~~~~~~~~  348 (441)
                                                 .+|.+. +..+.|++++..+++++    .|++|++||+.+.....   .... 
T Consensus       207 ---------------------------~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~---~~~~-  255 (493)
T PTZ00421        207 ---------------------------EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY---STVD-  255 (493)
T ss_pred             ---------------------------ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce---eEec-
Confidence                                       123222 33567888887777654    58999999997643211   0000 


Q ss_pred             ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee-cCCcEEEeCCCCCCCC
Q 013545          349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWCPSRHISD  426 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s-~D~~i~vW~~~~~~~~  426 (441)
                                                             ..+...+....|+||+++|++|+ .|++|++|++..+...
T Consensus       256 ---------------------------------------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        256 ---------------------------------------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             ---------------------------------------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence                                                   01223456677899999988877 4999999999876643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.9e-26  Score=216.44  Aligned_cols=202  Identities=21%  Similarity=0.356  Sum_probs=167.4

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      -+|.+..|-+ --+++++||.|..|||||..+++..                 ..+.+|.+-|.+++.+| ..++++|+|
T Consensus        56 ~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV-----------------~~FeAH~DyIR~iavHP-t~P~vLtsS  116 (794)
T KOG0276|consen   56 VPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKV-----------------KTFEAHSDYIRSIAVHP-TLPYVLTSS  116 (794)
T ss_pred             cchhhheeee-ccceEEEecCCceEEEEecccceee-----------------EEeeccccceeeeeecC-CCCeEEecC
Confidence            3555566653 2468999999999999999877532                 23458999999999998 467999999


Q ss_pred             CCCcEEEEECCCC-eEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          124 YDHYVKVWDTNCT-RVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       124 ~D~~i~iWd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      +|-+||+||-+.. .+.+++..+. -+++++|.|..  ...+||++.|.+|+||.+.+..+..++.||...|.||.|-+.
T Consensus       117 DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD--~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~  194 (794)
T KOG0276|consen  117 DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD--PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTG  194 (794)
T ss_pred             CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC--ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccC
Confidence            9999999998643 4566666543 47888888854  467999999999999999999999999999999999999876


Q ss_pred             C-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545          202 S-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  280 (441)
Q Consensus       202 ~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (441)
                      + +-.|+||+.|.+|++||..+..|++++                                                   
T Consensus       195 gdkpylIsgaDD~tiKvWDyQtk~CV~TL---------------------------------------------------  223 (794)
T KOG0276|consen  195 GDKPYLISGADDLTIKVWDYQTKSCVQTL---------------------------------------------------  223 (794)
T ss_pred             CCcceEEecCCCceEEEeecchHHHHHHh---------------------------------------------------
Confidence            4 235799999999999999887776654                                                   


Q ss_pred             CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                          .+|...|..+.|+|.-..|+|||.||++|||+-.+.+
T Consensus       224 --------------------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  224 --------------------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             --------------------hcccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence                                3577789999999999999999999999999987654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.1e-25  Score=207.51  Aligned_cols=248  Identities=29%  Similarity=0.475  Sum_probs=200.6

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..+|+..|.++.+++ ++++|++++.|+.|++||+.++.....+... ..+..+.+.+..   ..+++++.|+.|++||+
T Consensus         5 ~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG---TYLASGSSDKTIRLWDL   80 (289)
T ss_pred             hcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC---CEEEEEcCCCeEEEEEc
Confidence            347999999999987 6889999999999999999888766555443 445567777653   47888889999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ++++.+..+.+|...+.++.|+|+++ ++++++.|+.|++||+++++....+                            
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~----------------------------  131 (289)
T cd00200          81 ETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTL----------------------------  131 (289)
T ss_pred             CcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEe----------------------------
Confidence            99888888999999999999999865 6777777999999999754332211                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                 ..|...+.+++|+|++.++++++.|+.|++||+.+++
T Consensus       132 -------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  168 (289)
T cd00200         132 -------------------------------------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK  168 (289)
T ss_pred             -------------------------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence                                                       1355679999999999999999889999999998655


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL  416 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~  416 (441)
                      ...    ....+......+.+.+++..+++++ .+.+++||+.+++....+.+|..++.+++|+|++.++++++.|+.|+
T Consensus       169 ~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~  244 (289)
T cd00200         169 CVA----TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR  244 (289)
T ss_pred             cce----eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEE
Confidence            321    2222334566788888887666665 57899999999999999989999999999999998999998899999


Q ss_pred             EeCCCCCCCC
Q 013545          417 VWCPSRHISD  426 (441)
Q Consensus       417 vW~~~~~~~~  426 (441)
                      +|+..++...
T Consensus       245 i~~~~~~~~~  254 (289)
T cd00200         245 VWDLRTGECV  254 (289)
T ss_pred             EEEcCCceeE
Confidence            9999865543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.5e-25  Score=193.01  Aligned_cols=292  Identities=19%  Similarity=0.288  Sum_probs=220.9

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ++..-.+.|++|.|+ ++|.+|++++.|.+++|||..+++...                 ...-++.+|..+.|.+.+. 
T Consensus         9 ~f~~~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~-----------------ti~skkyG~~~~~Fth~~~-   69 (311)
T KOG1446|consen    9 VFRETNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVK-----------------TINSKKYGVDLACFTHHSN-   69 (311)
T ss_pred             ccccCCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceee-----------------EeecccccccEEEEecCCc-
Confidence            444456889999999 468899999999999999998775321                 1123555677777766444 


Q ss_pred             EEEEEeC--CCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          118 LFVTGSY--DHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       118 ~l~sgs~--D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      .++.++.  |.+||+-++.+.+.++.|+.+ ..|.++..+|..   ..+.|++.|.+|++||++..++...+.-  ..-.
T Consensus        70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~p  144 (311)
T KOG1446|consen   70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRP  144 (311)
T ss_pred             eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEec--CCCc
Confidence            4444444  999999999999999999854 458888888864   4788999999999999998887766542  2335


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCC--ceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRA--GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      .++|.|.|- +||.+...+.|++||+|+.  +.+..+..                                         
T Consensus       145 i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i-----------------------------------------  182 (311)
T KOG1446|consen  145 IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSI-----------------------------------------  182 (311)
T ss_pred             ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEcc-----------------------------------------
Confidence            678999985 6788777779999999853  11111100                                         


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                                 ...-....+.|.|||||++|+-++..+.+++.|.-+|.. ...+.........
T Consensus       183 ---------------------------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~  234 (311)
T KOG1446|consen  183 ---------------------------TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-KSTFSGYPNAGNL  234 (311)
T ss_pred             ---------------------------CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-eeeEeeccCCCCc
Confidence                                       001123478899999999999999999999999988863 2233333333345


Q ss_pred             ceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          353 PIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +....+.||+..++++.. +.+.+|++.+++.+..+++ |..++.|+.|+|.--++||+  +..+-.|-+..+.+
T Consensus       235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~~  307 (311)
T KOG1446|consen  235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDAL  307 (311)
T ss_pred             ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccccc
Confidence            677889999999998877 7999999999999999999 79999999999977677776  66788998876553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=3.9e-26  Score=205.90  Aligned_cols=278  Identities=19%  Similarity=0.315  Sum_probs=221.9

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ..+.++...|. ...++||+.|.++.++|......                 ...+.||...|+.+.+++ +...+++++
T Consensus       220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~-----------------l~~~~Gh~kki~~v~~~~-~~~~v~~aS  280 (506)
T KOG0289|consen  220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQI-----------------LATLKGHTKKITSVKFHK-DLDTVITAS  280 (506)
T ss_pred             CCeeEEeecCC-CCcceecCCCCceEEEecchhhh-----------------hhhccCcceEEEEEEecc-chhheeecC
Confidence            47888888764 56799999999999999865432                 134569999999999987 677899999


Q ss_pred             CCCcEEEEECCCCeE-EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC--CCCCeEEEEEec
Q 013545          124 YDHYVKVWDTNCTRV-VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWST  200 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~--h~~~v~~v~fsp  200 (441)
                      .|..|++|.+-.... .....+.+++..+..++.+   .+|.+++.|+.+-..|++++..+.....  ..-.+++++|+|
T Consensus       281 ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg---eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  281 ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG---EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             CcceEEeeccccccCccccccccccceeeeeccCC---cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            999999998765443 2333466788888888754   4899999999999999999987655543  334589999999


Q ss_pred             CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  280 (441)
Q Consensus       201 ~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (441)
                      ||- +|.+|..|+.|+|||+.++...                                                      
T Consensus       358 DgL-ifgtgt~d~~vkiwdlks~~~~------------------------------------------------------  382 (506)
T KOG0289|consen  358 DGL-IFGTGTPDGVVKIWDLKSQTNV------------------------------------------------------  382 (506)
T ss_pred             Cce-EEeccCCCceEEEEEcCCcccc------------------------------------------------------
Confidence            985 8999999999999999764210                                                      


Q ss_pred             CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC-cceEEEee
Q 013545          281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS-KPIQLATT  359 (441)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~  359 (441)
                                       ..+.+|.++|.+|+|+.+|-+||++..|+.|++||+++.++    +.++.+... ....+.+.
T Consensus       383 -----------------a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n----~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  383 -----------------AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN----FKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             -----------------ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc----cceeeccccccceeEEEc
Confidence                             12346999999999999999999999999999999997653    445444432 45678888


Q ss_pred             CCCcEEEEeCCCceEEEEcc----CCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          360 QDPAVVFVPCMTAVKAFDIW----SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       360 ~~~~~~~~~~~~~~~~wd~~----~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ..|.++..+ +..++++-..    ++.+..++..|.+..+++.|...-++++++|.|...++...
T Consensus       442 ~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  442 QSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             CCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            889888776 5556665544    67788899999999999999999999999999999888754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1e-26  Score=228.30  Aligned_cols=272  Identities=24%  Similarity=0.372  Sum_probs=199.9

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +.||++.|++++|. ..+++|+|||.|.++++||+.++.+.                 ..+.||...|.++...   ..+
T Consensus       245 l~GH~g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~C~-----------------~~l~gh~stv~~~~~~---~~~  303 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGECT-----------------HSLQGHTSSVRCLTID---PFL  303 (537)
T ss_pred             ccCCCCCceeEEEe-cCCCEEEEEecCCcEEeEecCCCcEE-----------------EEecCCCceEEEEEcc---Cce
Confidence            56999999999995 56789999999999999999887652                 1234899989887664   458


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +++||.|.+|++|++.++.++..+. +.+.|.++.+.     ..++++|+.|+.|++||+.+++++++++||...|.++.
T Consensus       304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~  378 (537)
T KOG0274|consen  304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI  378 (537)
T ss_pred             EeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence            8999999999999999999999888 77788887776     24899999999999999999999999999999999998


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      +.+. . .+++|+.|++|++||+++. +|..++                                               
T Consensus       379 ~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl-----------------------------------------------  409 (537)
T KOG0274|consen  379 VDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTL-----------------------------------------------  409 (537)
T ss_pred             ecCc-c-eEEeeeeccceEeecCCchhhhhhhh-----------------------------------------------
Confidence            8764 3 4789999999999999976 554433                                               


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                              .+|..-|..+.  ..++.|++++.|++|++||.+.+..... ++..  +......+
T Consensus       410 ------------------------~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~-~~~~--~~~~v~~l  460 (537)
T KOG0274|consen  410 ------------------------QGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRT-LEGR--HVGGVSAL  460 (537)
T ss_pred             ------------------------cCCcccccccc--cccceeEeccccccEEEeecccCceeee-eccC--CcccEEEe
Confidence                                    23444454433  4578999999999999999998764321 1110  11222222


Q ss_pred             EeeCCCcEEEEeCCCceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          357 ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                      ... +...+.......+++||+.++++...+-.+. .....+++.  + ...++......+.|
T Consensus       461 ~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~  519 (537)
T KOG0274|consen  461 ALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPS--S-PSFSTANVEAVQSW  519 (537)
T ss_pred             ecC-cceEEEEecCCeeEEEecccCchhhhhhhcccccccccccC--C-Cccccccccccccc
Confidence            222 2334444455799999999998877663343 334444433  2 23334344444444

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.6e-25  Score=219.63  Aligned_cols=218  Identities=17%  Similarity=0.312  Sum_probs=165.8

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ++.||.+.|++++|+|.++++|+|||.|++|+|||+.+......     ....+     ....+|...|.++.|+|....
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-----~~~~l-----~~L~gH~~~V~~l~f~P~~~~  139 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-----ISDPI-----VHLQGHTKKVGIVSFHPSAMN  139 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-----cCcce-----EEecCCCCcEEEEEeCcCCCC
Confidence            56799999999999985677999999999999999975421100     00011     123589999999999986567


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe-EE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-MT  195 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v-~~  195 (441)
                      +|+||+.|++|+|||+.+++.+..+. +...+.++.+++++   .+|++++.|+.|++||+++++.+..+.+|.+.+ ..
T Consensus       140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG---~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~  216 (493)
T PTZ00421        140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG---SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR  216 (493)
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC---CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence            99999999999999999998877776 45668899998854   489999999999999999999998999998754 46


Q ss_pred             EEEecCCCcEEEEe---ecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          196 VEWSTSSEWILVTG---GCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       196 v~fsp~~~~~l~s~---s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      +.|.|++..++.+|   +.|++|++||+++... +...+                                         
T Consensus       217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-----------------------------------------  255 (493)
T PTZ00421        217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-----------------------------------------  255 (493)
T ss_pred             EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-----------------------------------------
Confidence            78888877544333   3479999999985321 00000                                         


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCc
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRN  338 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~  338 (441)
                                                   ..+...+....|++++.+|++++ .|++|++||+.+++.
T Consensus       256 -----------------------------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        256 -----------------------------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             -----------------------------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence                                         00112355567999999998887 599999999987653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=3.1e-27  Score=211.80  Aligned_cols=284  Identities=20%  Similarity=0.324  Sum_probs=217.4

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +-.|.++|..+.|-+ +...|+||+.|..|++|++...+. +.              ..++.|-.++|..+.+-+ ++.+
T Consensus       171 ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~-~~--------------~~tLaGs~g~it~~d~d~-~~~~  233 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKS-EL--------------ISTLAGSLGNITSIDFDS-DNKH  233 (459)
T ss_pred             hhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccchh-hh--------------hhhhhccCCCcceeeecC-CCce
Confidence            346899999999974 556899999999999999864431 10              123446667888888876 5789


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +++++.|+.+++|++...+...++.. .+++....+..   ++..+++|+.|.+|++||+....+.+++-. .+.+..|.
T Consensus       234 ~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~  309 (459)
T KOG0288|consen  234 VIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIV  309 (459)
T ss_pred             EEeecCCCceeeeeccchhhhhhhcccccceeeehhhc---cccceeeccccchhhhhhhhhhheeccccc-cccccceE
Confidence            99999999999999998888777664 35565555543   233488999999999999999887766431 23334444


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      .++   ..++||..|++||+||+|+..+.....                                               
T Consensus       310 ~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~-----------------------------------------------  339 (459)
T KOG0288|consen  310 CSI---SDVISGHFDKKVRFWDIRSADKTRSVP-----------------------------------------------  339 (459)
T ss_pred             ecc---eeeeecccccceEEEeccCCceeeEee-----------------------------------------------
Confidence            443   247899999999999999765443221                                               


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-CcceEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQL  356 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~  356 (441)
                                               -.+.|++|..+++|..|.+.+.|.++.+.|+++.... ..+....+.. .....+
T Consensus       340 -------------------------~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~-~~~sA~g~k~asDwtrv  393 (459)
T KOG0288|consen  340 -------------------------LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR-QTFSAEGFKCASDWTRV  393 (459)
T ss_pred             -------------------------cCcceeeEeeccCCeEEeeecCCCceeeeecccccEE-EEeecccccccccccee
Confidence                                     1246999999999999999999999999999976432 2222222222 234568


Q ss_pred             EeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc--eEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          357 ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       357 ~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~--v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      .|+|++.+++.++. +.+.+|++.++++...+......  |++++|+|-|..|++++.++.+++|.
T Consensus       394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            89999999988765 78999999999998888776665  99999999999999999999999994

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.6e-26  Score=207.06  Aligned_cols=290  Identities=19%  Similarity=0.298  Sum_probs=215.0

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEE---eecc-cccCcccceeEEEEe
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV---VDKQ-HEHGHKYAISSAIWY  112 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~h~~~V~~~~~~  112 (441)
                      .++..|..+|.+++++| ++++..+++.||+|.-|++.++.....  .+.+ ..+..   ...+ ...+|...+.+++++
T Consensus       136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~--i~~~-~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRY--IIER-DEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCccccc--cccc-chhhhhccCCCCcccccccceeEEEEEc
Confidence            45678999999999986 577999999999999999987764210  0000 00000   0011 114899999999998


Q ss_pred             eCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545          113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (441)
Q Consensus       113 ~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~  191 (441)
                      + |+.+||||+.|..|.|||+.+.+.+..++. .+.+..++|.--   ..-+.+++.|..|++|+++.-.++.++-||.+
T Consensus       212 ~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd  287 (479)
T KOG0299|consen  212 S-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---TSELYSASADRSVKVWSIDQLSYVETLYGHQD  287 (479)
T ss_pred             C-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC---ccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence            7 899999999999999999999998888664 466777777642   33578899999999999999999999999999


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      .|.+|.-..-.+ .+-.|+.|+++++|++.....                                              
T Consensus       288 ~v~~IdaL~reR-~vtVGgrDrT~rlwKi~eesq----------------------------------------------  320 (479)
T KOG0299|consen  288 GVLGIDALSRER-CVTVGGRDRTVRLWKIPEESQ----------------------------------------------  320 (479)
T ss_pred             ceeeechhcccc-eEEeccccceeEEEeccccce----------------------------------------------
Confidence            999998876654 444466999999999843110                                              


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                                -.+.+|.+.+-+++|-. ...++|||.||.|.+|++.+.++.+...........
T Consensus       321 --------------------------lifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~  373 (479)
T KOG0299|consen  321 --------------------------LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE  373 (479)
T ss_pred             --------------------------eeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCC
Confidence                                      01234566788888864 457889999999999999987765432211111111


Q ss_pred             --------cceEEEeeCCCcEEEEeCC-CceEEEEccCC----ceEeeecccccceEEEEEcCCCCeEEEe
Q 013545          352 --------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSG----KTCLTFRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       352 --------~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~----~~~~~l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                              ....++..+...++++++. +.+|+|.+.++    .++..++ -.+.|+.++|+++|++|++|
T Consensus       374 ~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  374 LDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence                    3456777888888877755 78999999887    3455555 56789999999999977654

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.6e-25  Score=220.62  Aligned_cols=173  Identities=20%  Similarity=0.367  Sum_probs=135.0

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|.+.|++++|+|.++.+|+|||.||+|+|||+.+......  .+  ...+     ....+|...|.++.|+|...
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i--~~p~-----~~L~gH~~~V~sVaf~P~g~  138 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EI--KDPQ-----CILKGHKKKISIIDWNPMNY  138 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--cc--ccce-----EEeecCCCcEEEEEECCCCC
Confidence            356799999999999986678999999999999999975421100  00  0011     12347999999999998544


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE-
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT-  195 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~-  195 (441)
                      .+|+|+|.|++|+|||+.+++.+..+.+...+.++.|++++   .+|++++.|+.|++||+++++.+.++.+|.+.+.+ 
T Consensus       139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG---~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~  215 (568)
T PTZ00420        139 YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG---NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK  215 (568)
T ss_pred             eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC---CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence            46789999999999999999887777777778889998864   47888889999999999999999999999886543 


Q ss_pred             ----EEEecCCCcEEEEeecCC----cEEEEEcCC
Q 013545          196 ----VEWSTSSEWILVTGGCDG----AIRFWDIRR  222 (441)
Q Consensus       196 ----v~fsp~~~~~l~s~s~Dg----~I~iWD~~~  222 (441)
                          ..|++++.+ ++|++.|+    +|+|||++.
T Consensus       216 ~v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        216 NIWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCC
Confidence                345578775 56767664    799999984

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=218.40  Aligned_cols=260  Identities=27%  Similarity=0.406  Sum_probs=199.5

Q ss_pred             CCCCcee---EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           41 PHKGSIN---SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        41 ~H~~~V~---~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .|-..|+   .|+.+.++++||.||+.||.|++|++.........      ..+     .....|.+-|+.++... +++
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------~~~-----asme~HsDWVNDiiL~~-~~~   86 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------PYI-----ASMEHHSDWVNDIILCG-NGK   86 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCccc------chh-----hhhhhhHhHHhhHHhhc-CCC
Confidence            4556677   78888888899999999999999998654321100      000     11236888898887665 577


Q ss_pred             EEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--ee--------e
Q 013545          118 LFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--IS--------Q  184 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~--------~  184 (441)
                      .|+|+|.|.+|++|+...+.  +..++. +...+.+++..  .....++|||+.|+.|++||++++.  .+        .
T Consensus        87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~  164 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN  164 (735)
T ss_pred             ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec--ccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence            99999999999999987663  333332 23445566553  3356799999999999999999872  22        2


Q ss_pred             eec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          185 TLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       185 ~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      .+. ||...|.+++..+.+. ++++|+..+.+|+||.++.+...                                    
T Consensus       165 sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~kim------------------------------------  207 (735)
T KOG0308|consen  165 SLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKKIM------------------------------------  207 (735)
T ss_pred             cCCCCCccceeeeecCCcce-EEEecCcccceEEecccccccee------------------------------------
Confidence            233 8999999999999885 78999999999999998653111                                    


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~  343 (441)
                                                         .+.+|...|..|..++||+.++|+|.||+|++||+...+      
T Consensus       208 -----------------------------------kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr------  246 (735)
T KOG0308|consen  208 -----------------------------------KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR------  246 (735)
T ss_pred             -----------------------------------eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc------
Confidence                                               135899999999999999999999999999999997432      


Q ss_pred             eeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          344 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                                                             ++.++..|++.||.+..+|+=.++++|+.|+.|..=++.+.
T Consensus       247 ---------------------------------------Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  247 ---------------------------------------CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ---------------------------------------eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence                                                   23455669999999999999999999999999999988876


Q ss_pred             CCCCccCC
Q 013545          424 ISDGVDAG  431 (441)
Q Consensus       424 ~~~~~~~~  431 (441)
                      ...-.+|.
T Consensus       288 ~~~tlick  295 (735)
T KOG0308|consen  288 AKSTLICK  295 (735)
T ss_pred             hhheEeec
Confidence            54444443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9.7e-26  Score=206.39  Aligned_cols=278  Identities=23%  Similarity=0.317  Sum_probs=212.1

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ..|.+|+|+|....-+|.+|. -.++||+..+....                 ..+...+..|.++.|- .||.+||.|.
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-----------------k~~srFk~~v~s~~fR-~DG~LlaaGD   87 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-----------------KTFSRFKDVVYSVDFR-SDGRLLAAGD   87 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-----------------hhHHhhccceeEEEee-cCCeEEEccC
Confidence            689999999855433555444 46899997654321                 1111234456666665 4899999999


Q ss_pred             CCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          124 YDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      ..|.|+++|.++...+..+. +..++..+.|++.  ++.+|++|++|+.+++||+.+...+..+.+|++-|.|.+|+|..
T Consensus        88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~--d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~  165 (487)
T KOG0310|consen   88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ--DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN  165 (487)
T ss_pred             CcCcEEEeccccHHHHHHHhhccCceeEEEeccc--CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC
Confidence            99999999976644444444 3456777788875  45789999999999999999988766899999999999999998


Q ss_pred             CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      +.+++|||-||+||+||+|... -.+                                                      
T Consensus       166 ~hivvtGsYDg~vrl~DtR~~~-~~v------------------------------------------------------  190 (487)
T KOG0310|consen  166 DHIVVTGSYDGKVRLWDTRSLT-SRV------------------------------------------------------  190 (487)
T ss_pred             CeEEEecCCCceEEEEEeccCC-cee------------------------------------------------------
Confidence            8899999999999999998531 000                                                      


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP  362 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (441)
                                      ....|..+|-.|.+-|.|..||+++.. .|++||+.++...+..+.   -+.....++.+..++
T Consensus       191 ----------------~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~---~H~KtVTcL~l~s~~  250 (487)
T KOG0310|consen  191 ----------------VELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMF---NHNKTVTCLRLASDS  250 (487)
T ss_pred             ----------------EEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhh---cccceEEEEEeecCC
Confidence                            012466789999999999999998755 699999997764432111   133445567777777


Q ss_pred             cEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          363 AVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       363 ~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                      ..+++++. ..+++||..+.+..+.+. -.++|.+++.+||++.++.|-.||.+-+=
T Consensus       251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  251 TRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence            88888766 689999998888888765 67899999999999999999999987665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.5e-25  Score=210.03  Aligned_cols=273  Identities=19%  Similarity=0.260  Sum_probs=213.5

Q ss_pred             EEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcE
Q 013545           49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYV  128 (441)
Q Consensus        49 l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i  128 (441)
                      |+|+ . .+.|+.| ....+.+|+..++...             .+.    ..+...|+++.|.+ +|.+||.|-.+++|
T Consensus       183 ldWs-s-~n~laVa-lg~~vylW~~~s~~v~-------------~l~----~~~~~~vtSv~ws~-~G~~LavG~~~g~v  241 (484)
T KOG0305|consen  183 LDWS-S-ANVLAVA-LGQSVYLWSASSGSVT-------------ELC----SFGEELVTSVKWSP-DGSHLAVGTSDGTV  241 (484)
T ss_pred             hhcc-c-CCeEEEE-ecceEEEEecCCCceE-------------EeE----ecCCCceEEEEECC-CCCEEEEeecCCeE
Confidence            5565 2 3345544 5678999998766421             111    11267899999987 79999999999999


Q ss_pred             EEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee-ecCCCCCeEEEEEecCCCcE
Q 013545          129 KVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWI  205 (441)
Q Consensus       129 ~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~fsp~~~~~  205 (441)
                      .|||+.+.+.+..+..  .+.+.++++.     ...+.+|+.|+.|..+|+...+.... +.+|...|..++|++++. .
T Consensus       242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~-----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~  315 (484)
T KOG0305|consen  242 QIWDVKEQKKTRTLRGSHASRVGSLAWN-----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-Q  315 (484)
T ss_pred             EEEehhhccccccccCCcCceeEEEecc-----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-e
Confidence            9999988887776665  4456666665     34789999999999999998876554 889999999999999997 5


Q ss_pred             EEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCc
Q 013545          206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV  285 (441)
Q Consensus       206 l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (441)
                      ||||+.|+.+.|||.......                                                           
T Consensus       316 lASGgnDN~~~Iwd~~~~~p~-----------------------------------------------------------  336 (484)
T KOG0305|consen  316 LASGGNDNVVFIWDGLSPEPK-----------------------------------------------------------  336 (484)
T ss_pred             eccCCCccceEeccCCCcccc-----------------------------------------------------------
Confidence            899999999999997432100                                                           


Q ss_pred             ccccCCCcccccccceeeccCeEEEEEccC-CCEEEEe--ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545          286 RQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSA--GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP  362 (441)
Q Consensus       286 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sg--s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (441)
                                  .....|...|.+++|+|= ...||+|  +.|++|++||+.++.....     ......+..+.+++..
T Consensus       337 ------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-----vdtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  337 ------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-----VDTGSQVCSLIWSKKY  399 (484)
T ss_pred             ------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-----cccCCceeeEEEcCCC
Confidence                        113468889999999995 4577775  7899999999998764221     1123556778888887


Q ss_pred             cEEEEeCC---CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          363 AVVFVPCM---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       363 ~~~~~~~~---~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      ..+++..+   ..+.+|+..+-+.+..+.||...|..+++||||..++||+.|.++++|++-...
T Consensus       400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence            66666533   479999999999999999999999999999999999999999999999987753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.9e-26  Score=192.79  Aligned_cols=247  Identities=20%  Similarity=0.317  Sum_probs=185.2

Q ss_pred             eeEEEccCCCCcEEEEee-------CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           46 INSLQVDLTEERYLLSGA-------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      =++++|||--.++|+.+.       ..|++.|-++......            .+.   ....-.+++..++|++...++
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi------------~e~---~s~d~~D~LfdV~Wse~~e~~   75 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI------------QEC---QSYDTEDGLFDVAWSENHENQ   75 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCe------------EEE---EeeecccceeEeeecCCCcce
Confidence            367888876555554432       3467777776522210            000   011344577889999888889


Q ss_pred             EEEEeCCCcEEEEECCC-CeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          119 FVTGSYDHYVKVWDTNC-TRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      +++++.||++||||+.. ..++..++. ...++++.+.+..  ...++++|.|++||+|+...++.++++.||...|...
T Consensus        76 ~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~--r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a  153 (311)
T KOG0277|consen   76 VIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR--RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA  153 (311)
T ss_pred             EEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc--ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence            99999999999999643 234555543 3457777777653  3355666999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      .|+|....+|+++|.|++++|||+|..+....                                                
T Consensus       154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~------------------------------------------------  185 (311)
T KOG0277|consen  154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMS------------------------------------------------  185 (311)
T ss_pred             ecCCCCCCeEEEccCCceEEEEEecCCCceeE------------------------------------------------
Confidence            99999888999999999999999985321111                                                


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  355 (441)
                                             ..+|...+.++.|+. +...|+||+.|+.||+||++..+.                 
T Consensus       186 -----------------------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----------------  225 (311)
T KOG0277|consen  186 -----------------------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----------------  225 (311)
T ss_pred             -----------------------EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-----------------
Confidence                                   235777899999986 556789999999999999986541                 


Q ss_pred             EEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCCC
Q 013545          356 LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~~  424 (441)
                                                 ++-+|.||.-.|..|.|||-. ..|+|++-|.++|||++..+.
T Consensus       226 ---------------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  226 ---------------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             ---------------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence                                       123457899999999999974 558899999999999998543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-23  Score=174.28  Aligned_cols=305  Identities=21%  Similarity=0.338  Sum_probs=217.1

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceecc-ceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKH-RSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      -+-+|.+++|.|. |.+.+.||+.++.||--......+.. ++.... .+....  +-.+-|++.|.|.+|+| +|+++|
T Consensus        31 dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~-~hea~~~pp~v~~--kr~khhkgsiyc~~ws~-~gelia  105 (350)
T KOG0641|consen   31 DSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRH-AHEAAKQPPSVLC--KRNKHHKGSIYCTAWSP-CGELIA  105 (350)
T ss_pred             chhheeeEEecCC-CceEEeccCCceEEEEccccccCccc-ccccccCCCeEEe--eeccccCccEEEEEecC-ccCeEE
Confidence            3467999999974 66889999999998864322111111 111111 112222  22346999999999998 899999


Q ss_pred             EEeCCCcEEEEECCCCeE-----EEEEec-CCeeEEEeeccCCC-CccEEEEEeC-CCcEEEEECCCCceeeeecCCCCC
Q 013545          121 TGSYDHYVKVWDTNCTRV-----VMNFKM-PGKVYRTAMSPLAA-SHMLIAAGTE-DVQVRLCDIASGAISQTLSGHRDG  192 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~-~~~~las~s~-d~~I~vwdl~~~~~~~~l~~h~~~  192 (441)
                      |||.|++|++--.+...+     ...+.+ .|.+..++|-.+.. +..+|++++. |-.|.+-|..+|...+.+.||++-
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            999999999976654332     233443 57788888865543 3456666653 567888899999999999999999


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      |.++- +-++ ++|+|||.|.+||+||+|-..|+++++....-                                     
T Consensus       186 ilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-------------------------------------  226 (350)
T KOG0641|consen  186 ILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-------------------------------------  226 (350)
T ss_pred             EEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccC-------------------------------------
Confidence            98864 2233 57999999999999999988888776431100                                     


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                         +        .-..+.|.+|++.|.|++|++|-+|..+.+||++.++... .|+   .+...
T Consensus       227 -------------------~--------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq-~f~---phsad  275 (350)
T KOG0641|consen  227 -------------------G--------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ-RFH---PHSAD  275 (350)
T ss_pred             -------------------C--------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee-eeC---CCccc
Confidence                               0        0013569999999999999999999999999999887432 222   23344


Q ss_pred             ceEEEeeCCCcEEEEeCC-CceEEEEccC----CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          353 PIQLATTQDPAVVFVPCM-TAVKAFDIWS----GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~~~~wd~~~----~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ..++-++|...+++..+- ..+++=|+-.    .-...+...|++.+-.+.|+|..-.++|.|.|+++.+|..+
T Consensus       276 ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  276 IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            556777787777666544 3677776621    12233556799999999999999889999999999999764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.1e-25  Score=199.85  Aligned_cols=274  Identities=19%  Similarity=0.279  Sum_probs=193.8

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~  179 (441)
                      .|.+-|.++...   ++.++||++||++|+||.+ |+..+++. +.+.+..+++.........+++++.|.++++|-.+.
T Consensus       103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            577778777664   5689999999999999986 55555554 456676666655444455799999999999999988


Q ss_pred             Cce----eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          180 GAI----SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       180 ~~~----~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                      +..    ++..+||...|.+|+..+++. .++|||.|.+|+||+..+. ....+|.....                    
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~--------------------  236 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETD-EEDELESSSNR--------------------  236 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCC-ccccccccchh--------------------
Confidence            754    344569999999999999987 5799999999999993321 11111110000                    


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                        .+....+                       .-..+.-.....+.+|..+|.+|.|++ ...+.|+|-|-+|+.||+++
T Consensus       237 --rrk~~~~-----------------------~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet  290 (423)
T KOG0313|consen  237 --RRKKQKR-----------------------EKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET  290 (423)
T ss_pred             --hhhhhhh-----------------------hhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence              0000000                       000000112233578999999999998 77889999999999999998


Q ss_pred             CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc---eEeeecccccceEEEEEcCCCCe-EEEee
Q 013545          336 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK---TCLTFRGHYEYVNCCCFSSQDQE-LYTGG  410 (441)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~---~~~~l~gh~~~v~~v~fspd~~~-l~s~s  410 (441)
                      +.......     ......++...+...++++++. ..+++||..++.   ...+|.||.++|..|.|+|-+.+ |+||+
T Consensus       291 g~~~~~~~-----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S  365 (423)
T KOG0313|consen  291 GGLKSTLT-----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS  365 (423)
T ss_pred             ccceeeee-----cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence            86432111     1122345566666677777665 578999997764   34689999999999999997655 78999


Q ss_pred             cCCcEEEeCCCCCC-CCCccCC
Q 013545          411 NDRQILVWCPSRHI-SDGVDAG  431 (441)
Q Consensus       411 ~D~~i~vW~~~~~~-~~~~~~~  431 (441)
                      .|+++++||..+.+ ..+.+.|
T Consensus       366 ~D~t~klWDvRS~k~plydI~~  387 (423)
T KOG0313|consen  366 YDNTVKLWDVRSTKAPLYDIAG  387 (423)
T ss_pred             cCCeEEEEEeccCCCcceeecc
Confidence            99999999998777 5555544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=3.8e-25  Score=213.99  Aligned_cols=351  Identities=20%  Similarity=0.344  Sum_probs=238.1

Q ss_pred             ceeEEEccCCC-CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           45 SINSLQVDLTE-ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        45 ~V~~l~~s~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      .|++|.= |+. -+-++-|+.+|.++|||+.+++.            ++     +..++...|+++..+| -=+.+|.|-
T Consensus       161 ~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~------------v~-----~f~~~~s~IT~ieqsP-aLDVVaiG~  221 (910)
T KOG1539|consen  161 FITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKV------------VY-----TFQEFFSRITAIEQSP-ALDVVAIGL  221 (910)
T ss_pred             ceeeEec-chhheeeEEEeecCCcEEEEEeccCcE------------EE-----EecccccceeEeccCC-cceEEEEec
Confidence            3777753 431 12378999999999999987753            11     2346778899888877 357999999


Q ss_pred             CCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecC
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTS  201 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~  201 (441)
                      .+|+|.+++++.++.+++|+.+ |.+..++|..++  ..++|+|...|.+.+|||+..+.+..+. .|.+.|..+.|.|.
T Consensus       222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~  299 (910)
T KOG1539|consen  222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG  299 (910)
T ss_pred             cCceEEEEEcccCcEEEEEEccccceeEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence            9999999999999999999996 999999988764  5689999999999999999998887766 79899999999998


Q ss_pred             CCcEEEEeecCCcEEEEEcCC--C---------------ceeeEeccC--------Ccc---------------ccC---
Q 013545          202 SEWILVTGGCDGAIRFWDIRR--A---------------GCFRVLDQS--------QSQ---------------LGR---  238 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~--~---------------~~~~~~~~~--------~~~---------------~~~---  238 (441)
                      .+ +++|.+.|+++++|=..+  +               .|++.+...        +.+               .+.   
T Consensus       300 ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~  378 (910)
T KOG1539|consen  300 EP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN  378 (910)
T ss_pred             Cc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence            66 789999999999984332  1               122222110        000               000   


Q ss_pred             --C--------------CCcccccccc---c--------Ccc---------------CC-cCCCCCCcccCCCCCccccC
Q 013545          239 --R--------------PPLLKRKSLS---A--------GQN---------------SS-VKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       239 --~--------------~~~~~~~~~~---~--------~~~---------------~~-~~~~~~~~~~~~~~~~~~~~  275 (441)
                        +              ++........   .        ..+               .+ ..+....+.......++.++
T Consensus       379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~  458 (910)
T KOG1539|consen  379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF  458 (910)
T ss_pred             ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence              0              0000000000   0        000               00 00000000111222344455


Q ss_pred             cccccCC----CCccc-----ccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545          276 VGRIPAK----GSVRQ-----RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  346 (441)
Q Consensus       276 ~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~  346 (441)
                      .|++...    +.++.     .++.+.+   ....+|.++|++|+...-++.++|++.+|-+++||..+...    ....
T Consensus       459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf---~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l----~~~l  531 (910)
T KOG1539|consen  459 CGNFVFIGYSKGTIDRFNMQSGIHRKSF---GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL----KKSL  531 (910)
T ss_pred             cCceEEEeccCCeEEEEEcccCeeeccc---ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce----eeee
Confidence            5554322    11111     1111111   12357999999999999999999999999999999986531    2222


Q ss_pred             EeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          347 RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      ++.. .+...........++.++. ..++++|+.+.+.+..|.||.+.|++++|||||+||++++.|++||+||++++.+
T Consensus       532 ~l~~-~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  532 RLGS-SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             ccCC-CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence            3222 2223334445555555555 5899999999999999999999999999999999999999999999999998874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.3e-26  Score=191.46  Aligned_cols=259  Identities=20%  Similarity=0.354  Sum_probs=196.0

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE-eeCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-YPVD  115 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~~~~  115 (441)
                      ++.+.|...|-.+.++.. ++.|||+|.|++|||+.+......           .+   ...+.||.++|.-++| +|.-
T Consensus         5 ~idt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s-----------~l---l~~L~Gh~GPVwqv~wahPk~   69 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQS-----------KL---LAELTGHSGPVWKVAWAHPKF   69 (299)
T ss_pred             ehhhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCc-----------ee---eeEecCCCCCeeEEeeccccc
Confidence            566799999998887643 778999999999999998654210           01   1235699999999999 5556


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-c--eeeeecCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-A--ISQTLSGH  189 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~--~~~~l~~h  189 (441)
                      |.+||||++|+.|.||.-.+++-.....   +.+.+.++++.|... ..+||.+++||.|.|.+.++. .  ..+....|
T Consensus        70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence            8999999999999999988775322222   456789999999765 468899999999999998764 2  23456689


Q ss_pred             CCCeEEEEEecC---C----------CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          190 RDGIMTVEWSTS---S----------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       190 ~~~v~~v~fsp~---~----------~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      .-.|.++.|.|.   |          .+.|+||+.|+.|+||+...+.    .                           
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w---------------------------  197 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----W---------------------------  197 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----h---------------------------
Confidence            999999999987   3          1248999999999999976431    0                           


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC----CEEEEeecCCcEEEee
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSAGSDSRIRLWD  332 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~D~~i~~wd  332 (441)
                                                            .....+.+|.+.|+.+++.|.-    .+|||+|.||+|.||-
T Consensus       198 --------------------------------------~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  198 --------------------------------------KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             --------------------------------------hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence                                                  0111246799999999999974    4799999999999997


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                      .......                                       |+.+++++   -...++.+.||+.|..|+.++.|
T Consensus       240 ~~~e~e~---------------------------------------wk~tll~~---f~~~~w~vSWS~sGn~LaVs~Gd  277 (299)
T KOG1332|consen  240 KDEEYEP---------------------------------------WKKTLLEE---FPDVVWRVSWSLSGNILAVSGGD  277 (299)
T ss_pred             ecCccCc---------------------------------------cccccccc---CCcceEEEEEeccccEEEEecCC
Confidence            6521100                                       11222333   34669999999999999999999


Q ss_pred             CcEEEeCCCC
Q 013545          413 RQILVWCPSR  422 (441)
Q Consensus       413 ~~i~vW~~~~  422 (441)
                      +.|.+|..+.
T Consensus       278 Nkvtlwke~~  287 (299)
T KOG1332|consen  278 NKVTLWKENV  287 (299)
T ss_pred             cEEEEEEeCC
Confidence            9999997653

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=7.5e-25  Score=215.94  Aligned_cols=230  Identities=17%  Similarity=0.236  Sum_probs=166.6

Q ss_pred             EeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---
Q 013545           61 SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---  137 (441)
Q Consensus        61 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---  137 (441)
                      +|+.++.|++|+..+..            .+     ....+|..+|.++.|+|.++.+|||||.|++|++||+.++.   
T Consensus        49 gGG~~gvI~L~~~~r~~------------~v-----~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~  111 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKP------------PV-----IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV  111 (568)
T ss_pred             CCCceeEEEeeecCCCc------------eE-----EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence            36678888888864321            11     12358999999999998667899999999999999997542   


Q ss_pred             -----EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeec
Q 013545          138 -----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC  211 (441)
Q Consensus       138 -----~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~  211 (441)
                           ++..+. +...+..+.|+|..  ..+|++++.|+.|++||+++++.+..+. |...|.+++|+|++. +|++++.
T Consensus       112 ~~i~~p~~~L~gH~~~V~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s~  187 (568)
T PTZ00420        112 KEIKDPQCILKGHKKKISIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCV  187 (568)
T ss_pred             cccccceEEeecCCCcEEEEEECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEec
Confidence                 122222 34568889999864  3577899999999999999998777775 667899999999998 5788889


Q ss_pred             CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545          212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP  291 (441)
Q Consensus       212 Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (441)
                      |++|+|||++++.+...+.                                                             
T Consensus       188 D~~IrIwD~Rsg~~i~tl~-------------------------------------------------------------  206 (568)
T PTZ00420        188 GKHMHIIDPRKQEIASSFH-------------------------------------------------------------  206 (568)
T ss_pred             CCEEEEEECCCCcEEEEEe-------------------------------------------------------------
Confidence            9999999999875544332                                                             


Q ss_pred             CcccccccceeeccC-----eEEEEEccCCCEEEEeecCC----cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545          292 GMLSSQDRATAHYGA-----VTGLKVTEDGMYLLSAGSDS----RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP  362 (441)
Q Consensus       292 ~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~D~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (441)
                                +|.+.     +....|++++.+|+|++.|+    +|+|||++......   ...                
T Consensus       207 ----------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl---~~~----------------  257 (568)
T PTZ00420        207 ----------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL---VTM----------------  257 (568)
T ss_pred             ----------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce---EEE----------------
Confidence                      22222     33345779999999988774    79999998532111   000                


Q ss_pred             cEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          363 AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       363 ~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                                             .+..+.+.+......++|.++++|+.|++||+|++..+.
T Consensus       258 -----------------------~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        258 -----------------------SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             -----------------------EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence                                   112233444444556678889999999999999987654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.1e-25  Score=204.23  Aligned_cols=241  Identities=22%  Similarity=0.357  Sum_probs=192.4

Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~  182 (441)
                      ..|.++.|+|.+..-+|.++. -.+.|++..+..+..++ .+...+++..|..++   .+||+|...|.|++||+++...
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG---~LlaaGD~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG---RLLAAGDESGHVKVFDMKSRVI  102 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCC---eEEEccCCcCcEEEeccccHHH
Confidence            368889998866555655544 37999998877766543 345567888888765   4899999999999999887777


Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      ++.+.+|+.+|..+.|+|.+..+|++|+.|+.+++||+.+...  .                                  
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~----------------------------------  146 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--Q----------------------------------  146 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--E----------------------------------
Confidence            8899999999999999999988999999999999999875421  0                                  


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~  341 (441)
                                                         ....+|.+.|.+.+|+|.. ..++|||.||+||+||++.....  
T Consensus       147 -----------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~--  189 (487)
T KOG0310|consen  147 -----------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR--  189 (487)
T ss_pred             -----------------------------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce--
Confidence                                               0135799999999999975 58999999999999999875321  


Q ss_pred             eeeeEEeccCcce-EEEeeCCCcEEEEeCCCceEEEEccCCc-eEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          342 NFETVRLQTSKPI-QLATTQDPAVVFVPCMTAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       342 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wd~~~~~-~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                         ...+.++.|+ .+.+-|++..++++++..+|+||+.+|. ++..+.-|.+.|+|+++..++..|+|||-|+.+++++
T Consensus       190 ---v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd  266 (487)
T KOG0310|consen  190 ---VVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD  266 (487)
T ss_pred             ---eEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence               2234455555 4566788899999999999999998654 4455555999999999999999999999999999999


Q ss_pred             CCCCC
Q 013545          420 PSRHI  424 (441)
Q Consensus       420 ~~~~~  424 (441)
                      ..+.+
T Consensus       267 ~t~~K  271 (487)
T KOG0310|consen  267 TTNYK  271 (487)
T ss_pred             ccceE
Confidence            66543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=5.8e-26  Score=197.82  Aligned_cols=250  Identities=18%  Similarity=0.350  Sum_probs=188.2

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec---------CCeeEEEeeccCCCCccEEEEEeCCCc
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---------PGKVYRTAMSPLAASHMLIAAGTEDVQ  171 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~las~s~d~~  171 (441)
                      |.+.-+-|..|+| |+++|+|||-||.|.+|+..+|+....++.         ...+.++.|+.+.   .+||+|+.||.
T Consensus       211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs---EMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS---EMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH---HHhhccCcCCc
Confidence            4444566666766 899999999999999999998887654442         4567777777653   58999999999


Q ss_pred             EEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          172 VRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       172 I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      |++|.+++|.+++.|. .|+..|+|+.|+.|+.. +.|+|.|.++|+--+++++|+..                      
T Consensus       287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKE----------------------  343 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKE----------------------  343 (508)
T ss_pred             EEEEEEecchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHH----------------------
Confidence            9999999999999887 89999999999999886 57999999999999988766432                      


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                                                                       +.+|.+.|+...|++||.+++++|.||+|++
T Consensus       344 -------------------------------------------------frGHsSyvn~a~ft~dG~~iisaSsDgtvkv  374 (508)
T KOG0275|consen  344 -------------------------------------------------FRGHSSYVNEATFTDDGHHIISASSDGTVKV  374 (508)
T ss_pred             -------------------------------------------------hcCccccccceEEcCCCCeEEEecCCccEEE
Confidence                                                             3578889999999999999999999999999


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeeccc---ccceEEEEEcCCCCe
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGH---YEYVNCCCFSSQDQE  405 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh---~~~v~~v~fspd~~~  405 (441)
                      |+..+.... ..|.... ..-....+..-|....-+..|.  .++.+-++ .|+.+..|..-   .+..-++++||.|.|
T Consensus       375 W~~KtteC~-~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGew  451 (508)
T KOG0275|consen  375 WHGKTTECL-STFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEW  451 (508)
T ss_pred             ecCcchhhh-hhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcE
Confidence            999876521 1111111 0111222333333222223333  45556555 45666666433   245677889999999


Q ss_pred             EEEeecCCcEEEeCCCCCCCCCcc
Q 013545          406 LYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       406 l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      ++..++|+.+..+...++++..++
T Consensus       452 iYcigED~vlYCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  452 IYCIGEDGVLYCFSVLSGKLERTL  475 (508)
T ss_pred             EEEEccCcEEEEEEeecCceeeee
Confidence            999999999999999999887664

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.5e-24  Score=199.64  Aligned_cols=303  Identities=19%  Similarity=0.257  Sum_probs=212.5

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      -+.+|+..|.+|++.|+ |-.|+|||.|-+|++||.+......     ..-+       +....-...|.++.|++ .++
T Consensus       162 ~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~-----~~fr-------~l~P~E~h~i~sl~ys~-Tg~  227 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASM-----RSFR-------QLQPCETHQINSLQYSV-TGD  227 (641)
T ss_pred             eccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccc-----hhhh-------ccCcccccccceeeecC-CCC
Confidence            35678899999999975 6679999999999999987543110     0001       11112233588888887 577


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEec----------CCe---eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-e
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKM----------PGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-S  183 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~  183 (441)
                      +|+..+.....+++|=...+.....+.          .|+   +.+.+|+|+..  ..+.+++.|+++++||++..+. +
T Consensus       228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCchhhe
Confidence            887777788999999543333322221          233   45567777653  4678899999999999987653 2


Q ss_pred             eee-----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          184 QTL-----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       184 ~~l-----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      +++     .+-.-.+++.+|+|++++ +|+|..||+|++||.++...-..                              
T Consensus       306 qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~------------------------------  354 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPV------------------------------  354 (641)
T ss_pred             eEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccc------------------------------
Confidence            333     244567889999999996 78999999999999754210000                              


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeecc--CeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG--AVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                            .....+|..  .|++|+||+||++|+|-|.|.++++||++.-
T Consensus       355 --------------------------------------~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  355 --------------------------------------MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             --------------------------------------eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence                                                  001135655  7999999999999999999999999999875


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-------CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      +..+.....+ ........++|+|+..+++++..       +.+..||..+.+.+.++.--...|..+.|+|.=+.|..|
T Consensus       397 kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g  475 (641)
T KOG0772|consen  397 KKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG  475 (641)
T ss_pred             ccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence            5332111111 11222345789999999888643       247788888888888776667889999999987778888


Q ss_pred             ecCCcEEEe-CCCCCCCC
Q 013545          410 GNDRQILVW-CPSRHISD  426 (441)
Q Consensus       410 s~D~~i~vW-~~~~~~~~  426 (441)
                      +.||+++|+ |++...++
T Consensus       476 sgdG~~~vyYdp~~S~RG  493 (641)
T KOG0772|consen  476 SGDGTAHVYYDPNESIRG  493 (641)
T ss_pred             cCCCceEEEECccccccc
Confidence            889999887 77755544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=9.2e-25  Score=217.64  Aligned_cols=303  Identities=17%  Similarity=0.244  Sum_probs=208.4

Q ss_pred             cCCC-CceeEEEccCCCCcEEEEee--CCCcEEEEECCCCcc-cCCCCc-eeccceeEEeecccccCcccceeEEEEeeC
Q 013545           40 SPHK-GSINSLQVDLTEERYLLSGA--SDSSVAVYDVQRATD-YEGGGH-IAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        40 ~~H~-~~V~~l~~s~~~~~~l~s~s--~Dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      .+|. ..|++++.+| ++..++||+  .|+.++||+.+.--. ...... +..+  +.     +...|.+.|+|+.|++ 
T Consensus         9 v~H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~--l~-----~m~~h~~sv~CVR~S~-   79 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH--LC-----TMDDHDGSVNCVRFSP-   79 (942)
T ss_pred             cccCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchh--he-----eeccccCceeEEEECC-
Confidence            3565 5799999997 577899999  999999998653210 000000 0111  11     1236999999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-------C-----------eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545          115 DTGLFVTGSYDHYVKVWDTNC-------T-----------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~-------~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      ||.+||+||+|+.|.||+-..       +           ++...+. +++.+..+.++|+   ..+|++++.|++|.+|
T Consensus        80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~---~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD---DSLLVSVSLDNSVIIW  156 (942)
T ss_pred             CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC---ccEEEEecccceEEEE
Confidence            899999999999999998652       0           1222222 4566888888885   4599999999999999


Q ss_pred             ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                      |..+.+.++++++|.+.|-.+.|.|-|++ |||-+.|++|++|++.+-.+...+.....+....                
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~----------------  219 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT----------------  219 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEeeccchhhCCCc----------------
Confidence            99999999999999999999999999995 7999999999999976544433332111100000                


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCC-------CCcccccCCCcccccccceeeccCeEEEEEcc--------CC----
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAK-------GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--------DG----  316 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------dg----  316 (441)
                                ..-.....+|+|...+.       .....-+..+.......+.+|..++..+.|+|        +|    
T Consensus       220 ----------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~  289 (942)
T KOG0973|consen  220 ----------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQ  289 (942)
T ss_pred             ----------ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccC
Confidence                      00011233334333221       11111222333333445679999999999998        11    


Q ss_pred             -C----EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc
Q 013545          317 -M----YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY  391 (441)
Q Consensus       317 -~----~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~  391 (441)
                       .    .+|+||.|++|-||.....++.+...                                          .+  -.
T Consensus       290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~------------------------------------------~l--f~  325 (942)
T KOG0973|consen  290 PNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH------------------------------------------NL--FN  325 (942)
T ss_pred             CCcceEEEEEecCCccEEEEecCCCCchhhhh------------------------------------------hh--hc
Confidence             1    57899999999999986655432110                                          01  12


Q ss_pred             cceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          392 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       392 ~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      ..|.+++|||||-.|+.||.||+|.+...+...+
T Consensus       326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence            4599999999999999999999999998865443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.3e-24  Score=185.69  Aligned_cols=241  Identities=17%  Similarity=0.238  Sum_probs=186.1

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ...|.+++++++++   +.++||||.|.+|+|||......+..+ .+.+.+.++.|.+..... -|.+|+.||.|.+|+.
T Consensus        39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw~~  114 (362)
T KOG0294|consen   39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIWRV  114 (362)
T ss_pred             ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchh-heeeecCCCcEEEEEc
Confidence            45899999999995   679999999999999999876655443 356788888888754322 5778999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ..-+++.++++|.+.|+.++.+|.++ +.+|.+.|+.+|+||+-.++...++.                           
T Consensus       115 ~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~---------------------------  166 (362)
T KOG0294|consen  115 GSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLN---------------------------  166 (362)
T ss_pred             CCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeec---------------------------
Confidence            99999999999999999999999998 67899999999999987653211110                           


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                 ..+.  -+.|.|+|.|.+++.++.++ |-+|.+.+.+
T Consensus       167 -------------------------------------------L~~~--at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~  200 (362)
T KOG0294|consen  167 -------------------------------------------LKNK--ATLVSWSPQGDHFVVSGRNK-IDIYQLDNAS  200 (362)
T ss_pred             -------------------------------------------cCCc--ceeeEEcCCCCEEEEEeccE-EEEEecccHh
Confidence                                                       0111  22388999999888888775 8999887643


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEE--cCCCCeEEEeecCCc
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCF--SSQDQELYTGGNDRQ  414 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~f--spd~~~l~s~s~D~~  414 (441)
                      .    +..+.. +..+.+ +..-++..++++.. ..+++||-.+..++..|.+|+..|.++++  .|++.+|+|+|.||.
T Consensus       201 v----~~~i~~-~~r~l~-~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  201 V----FREIEN-PKRILC-ATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             H----hhhhhc-ccccee-eeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence            2    111111 112222 33344555666555 68999999999999999999999999984  467889999999999


Q ss_pred             EEEeCCCCC
Q 013545          415 ILVWCPSRH  423 (441)
Q Consensus       415 i~vW~~~~~  423 (441)
                      |+|||++..
T Consensus       275 I~vWd~~~~  283 (362)
T KOG0294|consen  275 IKVWDIDME  283 (362)
T ss_pred             EEEEEcccc
Confidence            999999866

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=1.2e-24  Score=185.02  Aligned_cols=254  Identities=20%  Similarity=0.349  Sum_probs=172.7

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.||+++|+|++.+ .+.++|+|||.|.+++|||+++++..-            ..      -...+|..+.|+. +++
T Consensus        47 ty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~la------------~~------k~~~~Vk~~~F~~-~gn  106 (327)
T KOG0643|consen   47 TYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQLA------------TW------KTNSPVKRVDFSF-GGN  106 (327)
T ss_pred             eecCCCceEEEEEec-CCcceeeeccccceeEEEEcCCCcEEE------------Ee------ecCCeeEEEeecc-CCc
Confidence            466999999999998 467899999999999999999886421            11      1234577777776 566


Q ss_pred             EEEEEeCC-----CcEEEEECC-------CCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-ee
Q 013545          118 LFVTGSYD-----HYVKVWDTN-------CTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-IS  183 (441)
Q Consensus       118 ~l~sgs~D-----~~i~iWd~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~  183 (441)
                      +++.+.++     +.|.++|++       ..++...+..+ .++....+.+..   ..|++|..||.|..||+++|+ .+
T Consensus       107 ~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~---~~ii~Ghe~G~is~~da~~g~~~v  183 (327)
T KOG0643|consen  107 LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG---ETIIAGHEDGSISIYDARTGKELV  183 (327)
T ss_pred             EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC---CEEEEecCCCcEEEEEcccCceee
Confidence            66655443     679999987       34455555543 456666677654   478999999999999999984 55


Q ss_pred             eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC-CCcccccccccCccCCcCCCCCC
Q 013545          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR-PPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      ...+.|...|+.+.|+|+.. .|+++|.|.+-++||+++..++.++....+..... .|......+.+++.         
T Consensus       184 ~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqe---------  253 (327)
T KOG0643|consen  184 DSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQE---------  253 (327)
T ss_pred             echhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCce---------
Confidence            66678999999999999987 58999999999999999988777765433221100 00000000001110         


Q ss_pred             cccCCCCCccccCcccc-cCCCCcccccCCC-cccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          263 KRSANGNGVRQSSVGRI-PAKGSVRQRLHPG-MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                                ....... ...+.+..++... ...+..+.++|.++|++|+|||+|+..+||+.||.||+.-+.
T Consensus       254 ----------A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  254 ----------AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ----------eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                      0000000 0012222222211 112234568999999999999999999999999999997554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=5.4e-24  Score=202.37  Aligned_cols=280  Identities=19%  Similarity=0.300  Sum_probs=204.4

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeE-EEEeeC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS-AIWYPV  114 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~  114 (441)
                      ..++.||..-|..+++. + +..++++|.||++++|+-......+               ....++|.+-|.+ +++.+.
T Consensus         7 s~~l~gH~~DVr~v~~~-~-~~~i~s~sRd~t~~vw~~~~~~~l~---------------~~~~~~~~g~i~~~i~y~e~   69 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVT-D-GVCIISGSRDGTVKVWAKKGKQYLE---------------THAFEGPKGFIANSICYAES   69 (745)
T ss_pred             EEEeccCccchheeEec-C-CeEEeecCCCCceeeeeccCccccc---------------ceecccCcceeeccceeccc
Confidence            45678999999988886 3 4479999999999999854322110               1123467777766 666665


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      ++.++++|+.|.+|.+|.+.+..++..++.+ +.+.++....+    ..++|||.|.++++|-+  +++...+.||+..|
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~----~~~iSgSWD~TakvW~~--~~l~~~l~gH~asV  143 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED----GTLISGSWDSTAKVWRI--GELVYSLQGHTASV  143 (745)
T ss_pred             cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc----CceEecccccceEEecc--hhhhcccCCcchhe
Confidence            6778999999999999999988887766543 34444433322    23889999999999986  45566799999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      +++.+.|.+  .++|||.|++||+|.-.  +++                                               
T Consensus       144 WAv~~l~e~--~~vTgsaDKtIklWk~~--~~l-----------------------------------------------  172 (745)
T KOG0301|consen  144 WAVASLPEN--TYVTGSADKTIKLWKGG--TLL-----------------------------------------------  172 (745)
T ss_pred             eeeeecCCC--cEEeccCcceeeeccCC--chh-----------------------------------------------
Confidence            999999987  46899999999999632  111                                               


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                              ..+.+|.+.|++|++-|++ .++|++.||.|++|++.... ..    ....+.+-.
T Consensus       173 ------------------------~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~-l~----~~~ghtn~v  222 (745)
T KOG0301|consen  173 ------------------------KTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEV-LL----EMHGHTNFV  222 (745)
T ss_pred             ------------------------hhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCce-ee----eeeccceEE
Confidence                                    1245799999999999876 56799999999999995432 11    112233334


Q ss_pred             eEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          354 IQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      ..+....+...+++.+ ..++|+|+..  .+...+.-..-.||++.+-++| -+++|+.||-||||..+.
T Consensus       223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEEEEecc
Confidence            4444445555555544 4799999986  5666666444589999999876 577788999999998763

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.9e-24  Score=183.17  Aligned_cols=277  Identities=18%  Similarity=0.299  Sum_probs=190.1

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcc-cCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD-YEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ..+..+|..-|.++.|++. |+.+||||.|++|+|||..+... +.             . -...+.|.+.|..+.|-++
T Consensus         6 ~pi~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~-------------~-Ts~Wrah~~Si~rV~WAhP   70 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWS-------------C-TSSWRAHDGSIWRVVWAHP   70 (361)
T ss_pred             cccccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceE-------------E-eeeEEecCCcEEEEEecCc
Confidence            4566799999999999974 78899999999999999754321 11             0 1234579999999999554


Q ss_pred             -CCCEEEEEeCCCcEEEEECC--C-----CeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--
Q 013545          115 -DTGLFVTGSYDHYVKVWDTN--C-----TRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--  181 (441)
Q Consensus       115 -~~~~l~sgs~D~~i~iWd~~--~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--  181 (441)
                       =|+.+|+||.|++++||.-.  +     .+-+..-.   -.+.+.++.|.|... ...+|+++.||.+|||+....-  
T Consensus        71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl-GLklA~~~aDG~lRIYEA~dp~nL  149 (361)
T KOG2445|consen   71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL-GLKLAAASADGILRIYEAPDPMNL  149 (361)
T ss_pred             cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc-ceEEEEeccCcEEEEEecCCcccc
Confidence             48999999999999999641  1     11111111   235688899988654 4578999999999999976542  


Q ss_pred             ----eeeeec-------CCCCCeEEEEEecCC--CcEEEEeecC-----CcEEEEEcCCCceeeEeccCCccccCCCCcc
Q 013545          182 ----ISQTLS-------GHRDGIMTVEWSTSS--EWILVTGGCD-----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL  243 (441)
Q Consensus       182 ----~~~~l~-------~h~~~v~~v~fsp~~--~~~l~s~s~D-----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~  243 (441)
                          +...++       .+.....||.|+|..  +-+||.|+.+     +.++||....+..                  
T Consensus       150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r------------------  211 (361)
T KOG2445|consen  150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR------------------  211 (361)
T ss_pred             ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc------------------
Confidence                222222       356677899999752  2256666654     3778886432210                  


Q ss_pred             cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC----CEE
Q 013545          244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYL  319 (441)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l  319 (441)
                                                                       .......+.+|.++|++|+|.|+-    ..|
T Consensus       212 -------------------------------------------------Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  212 -------------------------------------------------KWLKVAELPDHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             -------------------------------------------------eeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence                                                             000011234688999999999973    469


Q ss_pred             EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE
Q 013545          320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      |+++.|| |+||.+...+....  +....          .++..       ..   +   .-+.+..|.+|.++|+.|.|
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~--~ee~~----------~~~~~-------~~---l---~v~~vs~~~~H~~~VWrv~w  296 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIE--EEEVL----------APDLM-------TD---L---PVEKVSELDDHNGEVWRVRW  296 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhh--hhccc----------CCCCc-------cc---c---ceEEeeeccCCCCceEEEEE
Confidence            9999999 99999876432210  00000          00000       00   0   11345678899999999999


Q ss_pred             cCCCCeEEEeecCCcEEEeCCC
Q 013545          400 SSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       400 spd~~~l~s~s~D~~i~vW~~~  421 (441)
                      +--|..|+|.|.||+||+|...
T Consensus       297 NmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  297 NMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeeeeEEeecCCCceeeehhhh
Confidence            9999999999999999999765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=6.6e-25  Score=184.89  Aligned_cols=203  Identities=21%  Similarity=0.387  Sum_probs=167.8

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .|..-|.+++|+. +.++|+||+.++-+||||++..+...                ....+|+++|..+.|...| +.++
T Consensus        98 ~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App----------------~E~~ghtg~Ir~v~wc~eD-~~iL  159 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPP----------------KEISGHTGGIRTVLWCHED-KCIL  159 (334)
T ss_pred             hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCc----------------hhhcCCCCcceeEEEeccC-ceEE
Confidence            5888999999984 67899999999999999998654321                1235899999999998754 4677


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEec
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST  200 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp  200 (441)
                      |+++|++||+||.+++..++.+..+.++.++.+++++.   +|.. ...+.|+.||.++-.+++.++ -+..|.+.+++|
T Consensus       160 SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~---ilTi-a~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P  234 (334)
T KOG0278|consen  160 SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR---ILTI-AYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP  234 (334)
T ss_pred             eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC---EEEE-ecCceeEEeccccccceeecc-CccccccccccC
Confidence            77999999999999999999999999999999998753   4443 345689999999988887765 356789999999


Q ss_pred             CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  280 (441)
Q Consensus       201 ~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (441)
                      +.. ++++|+.|..++.||..++..+..+                                                   
T Consensus       235 ~k~-~fVaGged~~~~kfDy~TgeEi~~~---------------------------------------------------  262 (334)
T KOG0278|consen  235 KKE-FFVAGGEDFKVYKFDYNTGEEIGSY---------------------------------------------------  262 (334)
T ss_pred             CCc-eEEecCcceEEEEEeccCCceeeec---------------------------------------------------
Confidence            975 7899999999999998876321110                                                   


Q ss_pred             CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                         .++|.++|.+|.|+|||...++||.||+||||....++
T Consensus       263 -------------------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  263 -------------------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             -------------------ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence                               14789999999999999999999999999999877654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=195.13  Aligned_cols=244  Identities=18%  Similarity=0.271  Sum_probs=184.9

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.|-.+.|+++.|.+ +++++++++.|+.+++||+.....                 ..++.||++.|+++.+.-. 
T Consensus       212 ~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~-----------------~~TLsGHtdkVt~ak~~~~-  272 (459)
T KOG0288|consen  212 ISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRL-----------------RHTLSGHTDKVTAAKFKLS-  272 (459)
T ss_pred             hhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhh-----------------hhhhcccccceeeehhhcc-
Confidence            445667778899999986 578999999999999999975532                 2345689999999988753 


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      ...+++|+.|.+||+||+....+..+.-....+..+....     ..++||..|++|+.||..++.+....+.|. .|++
T Consensus       273 ~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtS  346 (459)
T KOG0288|consen  273 HSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTS  346 (459)
T ss_pred             ccceeeccccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecCc-ceee
Confidence            3459999999999999999888877665555555555542     368899999999999999999988888776 8999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +..++++.. +.+++.|.++++.|+++.....++...                                           
T Consensus       347 l~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~sA~-------------------------------------------  382 (459)
T KOG0288|consen  347 LDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTFSAE-------------------------------------------  382 (459)
T ss_pred             EeeccCCeE-EeeecCCCceeeeecccccEEEEeecc-------------------------------------------
Confidence            999999875 567799999999999975433222110                                           


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC--cc
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS--KP  353 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~--~~  353 (441)
                                            ....+|  ..+.+.|||++.|+++||.||.|+||++.+++....    ......  .+
T Consensus       383 ----------------------g~k~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~----l~~s~s~~aI  434 (459)
T KOG0288|consen  383 ----------------------GFKCAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV----LSLSTSNAAI  434 (459)
T ss_pred             ----------------------cccccc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEE----eccCCCCcce
Confidence                                  000122  267889999999999999999999999999874321    111122  35


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEE
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAF  376 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~w  376 (441)
                      ..+++.+.|..++++.. ..+.+|
T Consensus       435 ~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  435 TSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEEEEcCCCchhhcccCCcceEec
Confidence            67788888887766544 456666

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=2.9e-23  Score=183.78  Aligned_cols=256  Identities=18%  Similarity=0.259  Sum_probs=192.9

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      ++..|+..|.++..+| +.++++|||.|..-.+|++.++..+..+.. ...+.++.|+.++   .+||+|..+|.|+||.
T Consensus        59 tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg---tlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG---TLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc---eEEEecCCCccEEEEE
Confidence            4568999999999998 788999999999999999999997665553 4568888888754   6999999999999999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      ..++.....+.+--+.+.-+.|+|-.. +|+.|+.||.+-+|.+.+++...+                            
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv----------------------------  185 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKV----------------------------  185 (399)
T ss_pred             cccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeE----------------------------
Confidence            999998888877778899999999876 788999999999999876422111                            


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                                 +.+|..++++=.|.|||+.++++..|++|++||+.++
T Consensus       186 -------------------------------------------~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  186 -------------------------------------------MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             -------------------------------------------ecCCCCCcccccccCCCceEEEEecCceEEEEecCCC
Confidence                                                       2467788888899999999999999999999999988


Q ss_pred             Cceeeee-------eeEEe----------ccCcceEEEeeCCCcEEE-------------------------------Ee
Q 013545          337 RNTLVNF-------ETVRL----------QTSKPIQLATTQDPAVVF-------------------------------VP  368 (441)
Q Consensus       337 ~~~~~~~-------~~~~~----------~~~~~~~~~~~~~~~~~~-------------------------------~~  368 (441)
                      ++....-       +.+.+          ....+..+.-...++.+.                               .+
T Consensus       223 ~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A  302 (399)
T KOG0296|consen  223 QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAA  302 (399)
T ss_pred             ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhh
Confidence            6432111       00000          000000000000011110                               11


Q ss_pred             C---CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545          369 C---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       369 ~---~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~  431 (441)
                      +   .+++-+||+....+.+.+. |..+|..+.|-+ ..+|+|+..||.|++||..++.+...--|
T Consensus       303 ~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  303 CGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             cccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence            1   1468889987766655544 888999999999 78999999999999999999987765544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=1.6e-24  Score=197.08  Aligned_cols=228  Identities=23%  Similarity=0.408  Sum_probs=175.8

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.||..+-++|+|++...-+|+||+.|++|++||+.......   .       .........+|+..|..+.|++.+.+
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~---~-------~~~p~~~~~~h~~~VeDV~~h~~h~~  241 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED---K-------VVDPKTIFSGHEDVVEDVAWHPLHED  241 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC---c-------cccceEEeecCCcceehhhccccchh
Confidence            5779999999999998776789999999999999996432210   0       00112234689999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCC--eEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCe
Q 013545          118 LFVTGSYDHYVKVWDTNCT--RVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI  193 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v  193 (441)
                      +|+++++|+.+.|||++++  ++.... .+.+.+.++.|.|..  ..+||+|+.|++|.+||+++- +++.++.+|...|
T Consensus       242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev  319 (422)
T KOG0264|consen  242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV  319 (422)
T ss_pred             hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence            9999999999999999953  322222 246789999999974  679999999999999999875 4678999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      ..|.|+|..+.+|||++.|+.+.+||+..-...+..+.     .                                    
T Consensus       320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed-----a------------------------------------  358 (422)
T KOG0264|consen  320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED-----A------------------------------------  358 (422)
T ss_pred             EEEEeCCCCCceeEecccCCcEEEEeccccccccChhh-----h------------------------------------
Confidence            99999999999999999999999999864221100000     0                                    


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCC
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~  334 (441)
                                      ..+.....-...||...|....|+|+.. .|+|.+.|+.+.||.+.
T Consensus       359 ----------------~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 ----------------EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ----------------ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                            0000000112458999999999999976 57788999999999876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.2e-22  Score=175.85  Aligned_cols=286  Identities=15%  Similarity=0.220  Sum_probs=208.8

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ++-.+..+.|.+|+|||....+++.+|.|++||+|+++..-.+.               .+....|.++|.+++|+. ||
T Consensus        21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~---------------~ka~~~~~~PvL~v~Wsd-dg   84 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV---------------PKAQQSHDGPVLDVCWSD-DG   84 (347)
T ss_pred             ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCccc---------------chhhhccCCCeEEEEEcc-CC
Confidence            44567789999999999666678899999999999997531111               122346889999999987 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      ..+++|+-|+.+++||+.+++....--+.+++..+.+.+... -.+|++||.|.+|+.||++...++.++. -++.|.++
T Consensus        85 skVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   85 SKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             ceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence            999999999999999999998776666778888888766433 4589999999999999999988887764 35666666


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      ..-.  + +++.+..++.|.+|+++.+-..  +        ++                                     
T Consensus       163 Dv~~--p-m~vVata~r~i~vynL~n~~te--~--------k~-------------------------------------  192 (347)
T KOG0647|consen  163 DVLY--P-MAVVATAERHIAVYNLENPPTE--F--------KR-------------------------------------  192 (347)
T ss_pred             hccC--c-eeEEEecCCcEEEEEcCCCcch--h--------hh-------------------------------------
Confidence            6543  2 5677788999999999753100  0        00                                     


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce-eeeeeeEEec---cC-
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT-LVNFETVRLQ---TS-  351 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~-~~~~~~~~~~---~~-  351 (441)
                              ...              .-.--+++|+..+|....+-|+-.|++-+..+..+.+. ...|...+..   .+ 
T Consensus       193 --------~~S--------------pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~  250 (347)
T KOG0647|consen  193 --------IES--------------PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD  250 (347)
T ss_pred             --------hcC--------------cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence                    000              00012788999999888899999999999998875321 1112221110   01 


Q ss_pred             --cceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe-ecC
Q 013545          352 --KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GND  412 (441)
Q Consensus       352 --~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~D  412 (441)
                        ....+++.|--..++++ ++++...||-.....+++...|..+|+|++|+.+|.++|-+ |-|
T Consensus       251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence              12346777765566655 45788999998888888999999999999999999998854 444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=3.4e-22  Score=187.01  Aligned_cols=273  Identities=16%  Similarity=0.111  Sum_probs=187.8

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCcEEEEECCC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC  135 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~i~iWd~~~  135 (441)
                      +.++|++.|+.|++||+.+++..            ...     .+|. .+..+.+++ ++..+ ++++.|+.|++||+.+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~------------~~~-----~~~~-~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVT------------RTF-----PVGQ-RPRGITLSK-DGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceE------------EEE-----ECCC-CCCceEECC-CCCEEEEEECCCCeEEEEECCC
Confidence            57899999999999998765421            011     1222 245677776 66655 6778899999999999


Q ss_pred             CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC-c
Q 013545          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-A  214 (441)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-~  214 (441)
                      ++.+..+........+.+++++  ..+++++..++.|++||+++++.+..+.. ...+.+++|+|+++. +++++.++ .
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~-l~~~~~~~~~  138 (300)
T TIGR03866        63 GEVIGTLPSGPDPELFALHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKI-VVNTSETTNM  138 (300)
T ss_pred             CcEEEeccCCCCccEEEECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCE-EEEEecCCCe
Confidence            8887766554445556666653  34555666789999999999887776653 234688999999985 56666554 5


Q ss_pred             EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcc
Q 013545          215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML  294 (441)
Q Consensus       215 I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (441)
                      +.+||.+++.+...+.                                                                
T Consensus       139 ~~~~d~~~~~~~~~~~----------------------------------------------------------------  154 (300)
T TIGR03866       139 AHFIDTKTYEIVDNVL----------------------------------------------------------------  154 (300)
T ss_pred             EEEEeCCCCeEEEEEE----------------------------------------------------------------
Confidence            7778876543321110                                                                


Q ss_pred             cccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceee-eeeeEEe--ccCcceEEEeeCCCcEEEEeC-
Q 013545          295 SSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLV-NFETVRL--QTSKPIQLATTQDPAVVFVPC-  369 (441)
Q Consensus       295 ~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-  369 (441)
                              ....+..++|+|++++|+ ++..+++|++||+.+++.... .+.....  ....+..+++++++..++++. 
T Consensus       155 --------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       155 --------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             --------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence                    001235689999999885 455699999999998653111 0100000  011234577889998866643 


Q ss_pred             -CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe-ecCCcEEEeCCCCCCC
Q 013545          370 -MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPSRHIS  425 (441)
Q Consensus       370 -~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~D~~i~vW~~~~~~~  425 (441)
                       ...+.+||+.+++....+. +...+.+++|+|+|++|+++ +.+++|++||+.+...
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence             3579999999888776553 44579999999999999876 5689999999998874

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2e-23  Score=180.55  Aligned_cols=243  Identities=24%  Similarity=0.330  Sum_probs=175.3

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-CeEE--EEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVV--MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ...+.|.+++|+|....+++.+|+|++||+|+++. +..+  ....+++++.+++++.++   ..+++|+.|+.+++|||
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg---skVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG---SKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC---ceEEeeccCCceEEEEc
Confidence            45677999999997777888999999999999976 3433  234567899999999865   46888999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCC-cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      .+++ ...+..|.++|.++.|.+... .+|+|||+|++||+||+|....+.+++-                         
T Consensus       102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------------------  155 (347)
T KOG0647|consen  102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------------------  155 (347)
T ss_pred             cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------------------
Confidence            9995 456778999999999987654 2589999999999999996543332210                         


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                                     ...+.+++.  -..+++.+.+++.|.+|+++.+
T Consensus       156 -----------------------------------------------PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  156 -----------------------------------------------PERVYAADV--LYPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             -----------------------------------------------cceeeehhc--cCceeEEEecCCcEEEEEcCCC
Confidence                                                           122343333  2346778889999999999875


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCC--ceEeeeccccc---------ceEEEEEcCCCC
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG--KTCLTFRGHYE---------YVNCCCFSSQDQ  404 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~--~~~~~l~gh~~---------~v~~v~fspd~~  404 (441)
                      ...+...+. .+. -...++++..|....+.++. +.+-+..+..+  +.--+|+.|..         .|++++|+|.-.
T Consensus       187 ~te~k~~~S-pLk-~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg  264 (347)
T KOG0647|consen  187 PTEFKRIES-PLK-WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG  264 (347)
T ss_pred             cchhhhhcC-ccc-ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence            432211111 000 11234555555554455444 56777777765  33346666652         589999999999


Q ss_pred             eEEEeecCCcEEEeCCCCC
Q 013545          405 ELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       405 ~l~s~s~D~~i~vW~~~~~  423 (441)
                      .|+|+|.||+...||-+..
T Consensus       265 tlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  265 TLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             eEEEecCCceEEEecchhh
Confidence            9999999999999998743

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.1e-23  Score=190.17  Aligned_cols=283  Identities=20%  Similarity=0.312  Sum_probs=198.3

Q ss_pred             EEEEeeCCCc-EEEEECCCCcccCCCCceeccceeEEeecc-cccCcccceeEEEEeeCCCCEEEEEeC-CCcEEEEECC
Q 013545           58 YLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQ-HEHGHKYAISSAIWYPVDTGLFVTGSY-DHYVKVWDTN  134 (441)
Q Consensus        58 ~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~~l~sgs~-D~~i~iWd~~  134 (441)
                      .+.++|.|.. +.+||+.++...-            ...+. ...+|.-..    .   ...+++++.. -..|.+|.+.
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~------------~ykg~~~a~~~sl~~----l---~~~yllsaq~~rp~l~vw~i~   69 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLL------------QYKGSYLAQAASLTA----L---NNEYLLSAQLKRPLLHVWEIL   69 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeE------------EecCcccccchhhhh----h---chhheeeecccCccccccccC
Confidence            4556666665 9999999886410            00000 111222111    1   2346666544 4578999986


Q ss_pred             CCeEEE-EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC
Q 013545          135 CTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG  213 (441)
Q Consensus       135 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg  213 (441)
                      ...... .+-++|++.+++.+|.+   .+|+.|+..+.|++|.+.+|+++..+.+|-..|+|+.|+.|+.. |+|||.||
T Consensus        70 k~~~~~q~~v~Pg~v~al~s~n~G---~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~-iiTgskDg  145 (476)
T KOG0646|consen   70 KKDQVVQYIVLPGPVHALASSNLG---YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH-IITGSKDG  145 (476)
T ss_pred             chhhhhhhcccccceeeeecCCCc---eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE-EEecCCCc
Confidence            554433 45578999988888764   47777778999999999999999999999999999999999985 78999999


Q ss_pred             cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCc
Q 013545          214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM  293 (441)
Q Consensus       214 ~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (441)
                      .|.+|++-.-     +.....                                                         ..
T Consensus       146 ~V~vW~l~~l-----v~a~~~---------------------------------------------------------~~  163 (476)
T KOG0646|consen  146 AVLVWLLTDL-----VSADND---------------------------------------------------------HS  163 (476)
T ss_pred             cEEEEEEEee-----cccccC---------------------------------------------------------CC
Confidence            9999997421     000000                                                         00


Q ss_pred             ccccccceeeccCeEEEEEccCC--CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-
Q 013545          294 LSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-  370 (441)
Q Consensus       294 ~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  370 (441)
                      ......+..|.-+|+++...+.|  .+|+|+|.|.++|+||+..+....    ++. -+..+..++..|..+.+++++. 
T Consensus       164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl----ti~-fp~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL----TIT-FPSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE----EEe-cCCcceeEEEcccccEEEecCCc
Confidence            01112245788899999888764  589999999999999999886322    111 1334556777777777877765 


Q ss_pred             CceEEEEccC----------------CceEeeeccccc--ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545          371 TAVKAFDIWS----------------GKTCLTFRGHYE--YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       371 ~~~~~wd~~~----------------~~~~~~l~gh~~--~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~  430 (441)
                      +.+-+.++..                +.....+.||.+  .|+|++.|.||..|+||++||.++|||+.+....++++
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            3344444322                234557899998  99999999999999999999999999998776555444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=3.2e-23  Score=188.46  Aligned_cols=301  Identities=18%  Similarity=0.251  Sum_probs=210.3

Q ss_pred             eecCCCCceeEEEccCCCC-cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           38 IVSPHKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      +...|.+.|++++|+|... +++|.|+.-|+|-+||+.+.....        ..++.     +..|..+|.++.|+|.+.
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~--------d~v~~-----f~~hs~~Vs~l~F~P~n~  247 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK--------DGVYL-----FTPHSGPVSGLKFSPANT  247 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------CceEE-----eccCCccccceEecCCCh
Confidence            3456889999999999877 689999999999999995322110        11222     347999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecC--C-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCCC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP--G-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDG  192 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~  192 (441)
                      .++++.|+||+||+=|++.......+...  . ....+.+..  .+..+++.... |...+||++++.. ...+.-|...
T Consensus       248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~-G~f~~iD~R~~~s~~~~~~lh~kK  324 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNV-GNFNVIDLRTDGSEYENLRLHKKK  324 (498)
T ss_pred             hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecc-cceEEEEeecCCccchhhhhhhcc
Confidence            99999999999999999876543333331  1 122222332  22334444443 4899999998765 5566778999


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      |.+++++|..+++|+|+|.|++.+|||+|.-..            +..|                               
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~------------K~sp-------------------------------  361 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRG------------KASP-------------------------------  361 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhhcC------------CCCc-------------------------------
Confidence            999999999999999999999999999985210            0000                               


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC----CCCceeeeeeeEE-
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE----SGRNTLVNFETVR-  347 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~----~~~~~~~~~~~~~-  347 (441)
                                  +.            -...|.-.|.+..|||.+-.|+|.+.|.+|||||..    .-.+.....+... 
T Consensus       362 ------------~l------------st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t  417 (498)
T KOG4328|consen  362 ------------FL------------STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT  417 (498)
T ss_pred             ------------ce------------ecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence                        00            013577789999999999889999999999999984    1111111111111 


Q ss_pred             eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccccc-ceEE-EEEcCCCCeEEEe-ecCCcEEEeCCC
Q 013545          348 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-YVNC-CCFSSQDQELYTG-GNDRQILVWCPS  421 (441)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~-~v~~-v~fspd~~~l~s~-s~D~~i~vW~~~  421 (441)
                      ...-.+....+.|+..+++++.. ..+-++|-..++.+..|.+-.. .|.+ ..|+|-+-.+++| +.-|.|.||.-.
T Consensus       418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            11223456778888777777755 5799999988888877655543 3433 5799987745554 556788888643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.8e-24  Score=201.96  Aligned_cols=207  Identities=22%  Similarity=0.396  Sum_probs=169.9

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +..|...|+.+.+. .+++.|+|+|.|-+|++|+...+...               -..+...|++-|.|+++-.++..+
T Consensus        69 me~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~~~~---------------c~stir~H~DYVkcla~~ak~~~l  132 (735)
T KOG0308|consen   69 MEHHSDWVNDIILC-GNGKTLISASSDTTVKVWNAHKDNTF---------------CMSTIRTHKDYVKCLAYIAKNNEL  132 (735)
T ss_pred             hhhhHhHHhhHHhh-cCCCceEEecCCceEEEeecccCcch---------------hHhhhhcccchheeeeecccCcee
Confidence            34588899999887 56778999999999999998654210               123455799999999995568889


Q ss_pred             EEEEeCCCcEEEEECCCCe--EEEEEe------cC----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee
Q 013545          119 FVTGSYDHYVKVWDTNCTR--VVMNFK------MP----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~--~~~~~~------~~----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l  186 (441)
                      +||||.|+.|.+||++++.  .+..+.      ..    ..+++++..+.   ..++++|+..+.+++||..+++.++.+
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t---~t~ivsGgtek~lr~wDprt~~kimkL  209 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT---GTIIVSGGTEKDLRLWDPRTCKKIMKL  209 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc---ceEEEecCcccceEEeccccccceeee
Confidence            9999999999999999773  333322      11    23666666653   368999999999999999999999999


Q ss_pred             cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      +||+..|.++..+++|.. ++|+|.||+||+||++.+.|+.++                                     
T Consensus       210 rGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgqQrCl~T~-------------------------------------  251 (735)
T KOG0308|consen  210 RGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQQRCLATY-------------------------------------  251 (735)
T ss_pred             eccccceEEEEEcCCCCe-EeecCCCceEEeeeccccceeeeE-------------------------------------
Confidence            999999999999999985 689999999999999987776543                                     


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                        ..|...|.++..+|+-.++.+|+.|+.|..=|+.+.
T Consensus       252 ----------------------------------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  252 ----------------------------------IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ----------------------------------EeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence                                              356677999999999999999999999999998874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=1.3e-23  Score=199.87  Aligned_cols=236  Identities=19%  Similarity=0.330  Sum_probs=188.1

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEE-EeeccCCCCccEEEEEeCCCcEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYR-TAMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~las~s~d~~I~v  174 (441)
                      ..||+..|..+++.+  +..++++|+|+++++|+-...+.+......   +-+.. +++.+  ...-.+.+|+.|..|.+
T Consensus        10 l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             eccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEeecccceEEE
Confidence            358999998887753  557999999999999998776665433332   22222 33333  12335889999999999


Q ss_pred             EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      |.+.+..++.+|.||...|.|++...++.  ++|||+|.++++|-+...  ..                           
T Consensus        86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l--~~---------------------------  134 (745)
T KOG0301|consen   86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL--VY---------------------------  134 (745)
T ss_pred             EecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchhh--hc---------------------------
Confidence            99999999999999999999999776653  789999999999965321  00                           


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                                                                  ...+|..+|.++++-|.+ .++|||+|++||+|.-.
T Consensus       135 --------------------------------------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~  169 (745)
T KOG0301|consen  135 --------------------------------------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG  169 (745)
T ss_pred             --------------------------------------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccCC
Confidence                                                        135799999999999998 88899999999999865


Q ss_pred             CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545          335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                      +.-      .++..+.+....+++-++..++.++..+.++.|++ +|+.+.++.||+..|.++...++++.++|+|+|++
T Consensus       170 ~~l------~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt  242 (745)
T KOG0301|consen  170 TLL------KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT  242 (745)
T ss_pred             chh------hhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence            432      23333555666678888878877777789999999 89999999999999999998888999999999999


Q ss_pred             EEEeCCC
Q 013545          415 ILVWCPS  421 (441)
Q Consensus       415 i~vW~~~  421 (441)
                      +|||+..
T Consensus       243 lriW~~~  249 (745)
T KOG0301|consen  243 LRIWKKD  249 (745)
T ss_pred             EEEeecC
Confidence            9999876

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=6e-23  Score=188.47  Aligned_cols=282  Identities=18%  Similarity=0.297  Sum_probs=207.4

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .|.+.|.++.+| ...+++.||+. |.|+|||+.......   .+.. ..+        .....-|.++..++ |+..|+
T Consensus       417 ~HGEvVcAvtIS-~~trhVyTgGk-gcVKVWdis~pg~k~---Pvsq-Ldc--------l~rdnyiRSckL~p-dgrtLi  481 (705)
T KOG0639|consen  417 AHGEVVCAVTIS-NPTRHVYTGGK-GCVKVWDISQPGNKS---PVSQ-LDC--------LNRDNYIRSCKLLP-DGRTLI  481 (705)
T ss_pred             ccCcEEEEEEec-CCcceeEecCC-CeEEEeeccCCCCCC---cccc-ccc--------cCcccceeeeEecC-CCceEE
Confidence            687888888898 45778999876 999999996442110   0000 001        01223466777777 788999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +||.-.++-|||+....+.....+..   ..+.++++++.   .++.++..||.|.||||.+...++.|+||++.+.||.
T Consensus       482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDa---kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  558 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc---ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence            99999999999998777644433332   24567777764   4777888999999999999999999999999999999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      .+++|.. |.||+-|++||-||+|.+..+..                                                 
T Consensus       559 is~dGtk-lWTGGlDntvRcWDlregrqlqq-------------------------------------------------  588 (705)
T KOG0639|consen  559 ISKDGTK-LWTGGLDNTVRCWDLREGRQLQQ-------------------------------------------------  588 (705)
T ss_pred             ecCCCce-eecCCCccceeehhhhhhhhhhh-------------------------------------------------
Confidence            9999975 78999999999999987532110                                                 


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                             ....+-|.+|..+|++..|+.|-..+.+.+-.....+.     +.+..+.+....+-
T Consensus       589 -----------------------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----yqlhlheScVLSlK  640 (705)
T KOG0639|consen  589 -----------------------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----YQLHLHESCVLSLK  640 (705)
T ss_pred             -----------------------hhhhhhheecccCCCccceeeecccCcEEEEecCCccc-----eeecccccEEEEEE
Confidence                                   00123478899999999999999999998877654332     23344556677788


Q ss_pred             eeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          358 TTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       358 ~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      |.+-|...++.+. .-+..|..--|..+-... ....|.||.+|.|++++||||-|+...|+.
T Consensus       641 Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  641 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence            8888888777655 345667654443333222 346799999999999999999998877764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=1.8e-22  Score=191.99  Aligned_cols=321  Identities=18%  Similarity=0.213  Sum_probs=208.6

Q ss_pred             eecCCCCceeEEEccCCCCc---EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           38 IVSPHKGSINSLQVDLTEER---YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      .+.||..+|+|+.+-|+ .+   +++||+.|+.|.+|.++.. .              .....+..+|...+.|+...+ 
T Consensus        49 ~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~-~--------------~~~i~~~~g~~~~~~cv~a~~-  111 (764)
T KOG1063|consen   49 TLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDE-Y--------------LIKIYTIQGHCKECVCVVARS-  111 (764)
T ss_pred             eccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeeh-h--------------eEEEEeecCcceeEEEEEeee-
Confidence            35699999999999764 44   7999999999999998621 1              011123446777776654432 


Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCe--EEEEEecC-CeeE--EEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeee
Q 013545          115 DTGLFVTG-SYDHYVKVWDTNCTR--VVMNFKMP-GKVY--RTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTL  186 (441)
Q Consensus       115 ~~~~l~sg-s~D~~i~iWd~~~~~--~~~~~~~~-~~~~--~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l  186 (441)
                         .+.++ +.|+++.+||.+..+  ++..+... +...  ++++.+ ..+..++|.|+.+..|.++.-.+.+  ....+
T Consensus       112 ---~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el  187 (764)
T KOG1063|consen  112 ---SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAEL  187 (764)
T ss_pred             ---eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEe
Confidence               23333 789999999996655  22222222 1222  333334 2455688888888899999876554  45678


Q ss_pred             cCCCCCeEEEEEecCC--CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545          187 SGHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR  264 (441)
Q Consensus       187 ~~h~~~v~~v~fsp~~--~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (441)
                      .||.+.|.+++|...+  ..+|+|+|.|.+||||.+.-.......+.   .          ..++      .....+ .+
T Consensus       188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~---e----------~~~t------~~~~~~-~f  247 (764)
T KOG1063|consen  188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER---E----------DSLT------TLSNLP-VF  247 (764)
T ss_pred             eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc---c----------cccc------cccCCc-ee
Confidence            9999999999998653  46899999999999999864321110000   0          0000      000000 00


Q ss_pred             cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeee
Q 013545          265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE  344 (441)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~  344 (441)
                      . ..              ..+..+     ........+|.+.|.++.|+|.+..|+|+|.|+++.+|...........  
T Consensus       248 ~-~l--------------~~i~~~-----is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~--  305 (764)
T KOG1063|consen  248 M-IL--------------EEIQYR-----ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD--  305 (764)
T ss_pred             e-ee--------------eeEEEE-----EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE--
Confidence            0 00              000000     0111234699999999999999999999999999999987765332221  


Q ss_pred             eEEec-----cCcceEEEeeCCCcEEEEeCC-CceEEEEccC---CceEeeecccccceEEEEEcCCCCeEEEeecCCcE
Q 013545          345 TVRLQ-----TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWS---GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI  415 (441)
Q Consensus       345 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~---~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i  415 (441)
                      ..++.     ..+=....+++++..++.-+. ++.++|.-.+   ......+.||.+.|.+|+|.|.|.+|+|+|.|.|-
T Consensus       306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTT  385 (764)
T KOG1063|consen  306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTT  385 (764)
T ss_pred             EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccce
Confidence            11211     111233556677766555444 6889997221   23456789999999999999999999999999999


Q ss_pred             EEeCCC
Q 013545          416 LVWCPS  421 (441)
Q Consensus       416 ~vW~~~  421 (441)
                      ||+-+-
T Consensus       386 RlFa~w  391 (764)
T KOG1063|consen  386 RLFARW  391 (764)
T ss_pred             eeeccc
Confidence            999775

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=2.2e-22  Score=183.24  Aligned_cols=247  Identities=21%  Similarity=0.271  Sum_probs=181.7

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+|...|.+++.++ +++|||||+.|..|.|||.++.+..                 +.+.+|.+.|.+++|.. ....+
T Consensus       199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv-----------------~~~~ghr~~V~~L~fr~-gt~~l  259 (479)
T KOG0299|consen  199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHV-----------------KVFKGHRGAVSSLAFRK-GTSEL  259 (479)
T ss_pred             ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchh-----------------hcccccccceeeeeeec-Cccce
Confidence            38999999999995 7899999999999999999876531                 23468999999998865 56689


Q ss_pred             EEEeCCCcEEEEECCCCeEEEE-EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      +++|.|++|++|++.....+.+ +.++..+..+.....   ..++.+|+-|.++++|++. .+....+.+|.+.+.|++|
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r---eR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR---ERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAF  335 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc---cceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEE
Confidence            9999999999999976665443 334555555544432   3467777799999999993 3445578899999999999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  278 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (441)
                      ..+..  |+|||.||.|.+|++-+-+.+.+....+..                                           
T Consensus       336 In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv-------------------------------------------  370 (479)
T KOG0299|consen  336 INDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGV-------------------------------------------  370 (479)
T ss_pred             ecccc--eeeccCCceEEEeeecccCceeEeeccccc-------------------------------------------
Confidence            98754  689999999999998765443332111100                                           


Q ss_pred             ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545          279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (441)
                                 .+.    . ....+..+|++|+..|...++++||-+|.||+|-++.+-..+..+..+. ..+-+..+++
T Consensus       371 -----------~~~----~-~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f  433 (479)
T KOG0299|consen  371 -----------IPE----L-DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF  433 (479)
T ss_pred             -----------cCC----c-cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence                       000    0 0112346899999999999999999999999999998743332233322 2344567888


Q ss_pred             eCCCcEEEEeCCC
Q 013545          359 TQDPAVVFVPCMT  371 (441)
Q Consensus       359 ~~~~~~~~~~~~~  371 (441)
                      +.++..++++.+.
T Consensus       434 ~~sgk~ivagiGk  446 (479)
T KOG0299|consen  434 SNSGKRIVAGIGK  446 (479)
T ss_pred             ccCCCEEEEeccc
Confidence            9999987777653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.6e-22  Score=173.50  Aligned_cols=242  Identities=22%  Similarity=0.324  Sum_probs=175.1

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                      ..+..|.++.|++ ..+.|+.++||+++++||+........+++..++.+++|.+.    ..+++|+.||.|+++|++++
T Consensus        11 pP~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   11 PPEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             CChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC----ceEEEeccCceEEEEEecCC
Confidence            4567899999996 455677777999999999998888888889999999998873    35889999999999999998


Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                      +.. .+..|..+|.|+.+++... .+++||+|++|++||.|...+...+                               
T Consensus        86 ~~~-~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~-------------------------------  132 (323)
T KOG1036|consen   86 NED-QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTF-------------------------------  132 (323)
T ss_pred             cce-eeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccc-------------------------------
Confidence            753 4556999999999998755 4789999999999999842111000                               


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                                               .....|.+++.+  |..|+.|+.|..+.+||+++....+
T Consensus       133 -----------------------------------------d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~  169 (323)
T KOG1036|consen  133 -----------------------------------------DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF  169 (323)
T ss_pred             -----------------------------------------ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh
Confidence                                                     011257777665  6789999999999999999765322


Q ss_pred             eeee-eEEeccCcceEEEeeCCCcEEEEeC-CC--ceEEEEcc--CCceEeeeccccc---------ceEEEEEcCCCCe
Q 013545          341 VNFE-TVRLQTSKPIQLATTQDPAVVFVPC-MT--AVKAFDIW--SGKTCLTFRGHYE---------YVNCCCFSSQDQE  405 (441)
Q Consensus       341 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~wd~~--~~~~~~~l~gh~~---------~v~~v~fspd~~~  405 (441)
                      ...+ .+.   -...++++.|++.-.++.+ .+  .+..+|-.  ..+....|+.|..         ||++++|+|-.+.
T Consensus       170 q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  170 QRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             hhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence            1000 001   1123455556544433332 23  34444443  1133345666653         7999999999999


Q ss_pred             EEEeecCCcEEEeCCCCCCCC
Q 013545          406 LYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       406 l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      |||||.||-|.+||+...+..
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             EEecCCCceEEEccCcchhhh
Confidence            999999999999999877754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=5.3e-22  Score=179.42  Aligned_cols=205  Identities=19%  Similarity=0.340  Sum_probs=166.4

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ++.||+..|+.+.|++ +.+.++++|.|..|+||.+......                 .....|..+|+.+..++ .|+
T Consensus       256 ~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~-----------------~~~~~h~~~V~~ls~h~-tge  316 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEP-----------------TSSRPHEEPVTGLSLHP-TGE  316 (506)
T ss_pred             hccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCc-----------------cccccccccceeeeecc-CCc
Confidence            5679999999999997 4668999999999999987543321                 11236888898888877 799


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      ||++++.|++.-+-|++++..+.......   ...+.+|+|++   .+|++|..|+.+++||++++.....|.+|.++|.
T Consensus       317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk  393 (506)
T KOG0289|consen  317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK  393 (506)
T ss_pred             EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence            99999999999999999999887766532   25677788864   5899999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      +++|+.+| |.|++++.|+.|++||+|..+.+.++..                                           
T Consensus       394 ~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l-------------------------------------------  429 (506)
T KOG0289|consen  394 AISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQL-------------------------------------------  429 (506)
T ss_pred             EEEeccCc-eEEEEEecCCeEEEEEehhhcccceeec-------------------------------------------
Confidence            99999987 5689999999999999997543332210                                           


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                                 ...-+|.++.|.+.|++|+.++.|=+|++++-.+
T Consensus       430 ---------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  430 ---------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             ---------------------------cccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence                                       0112588999999999999998887777776443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1e-22  Score=195.95  Aligned_cols=291  Identities=18%  Similarity=0.298  Sum_probs=206.8

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ...++|...++ -..|+.++. ..++||-+......+         .+-. .......-...+..+.|...+.++|||++
T Consensus        40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~---------~~~~-~~k~kqn~~~S~~DVkW~~~~~NlIAT~s  107 (839)
T KOG0269|consen   40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSE---------KCNH-RFKTKQNKFYSAADVKWGQLYSNLIATCS  107 (839)
T ss_pred             cccceEeecCC-cceeEEecc-cceeeEeeCcccCCc---------ceee-ecccccceeeehhhcccccchhhhheeec
Confidence            45667777654 445666654 567788764322111         0000 00001111123445677766788999999


Q ss_pred             CCCcEEEEECCC---CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545          124 YDHYVKVWDTNC---TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       124 ~D~~i~iWd~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs  199 (441)
                      ..|.|-+||+..   .+.+..|. +.-.+..+.|++..+  .+|++|+.|+.|++||++..+...++.+....|..|.|+
T Consensus       108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs  185 (839)
T KOG0269|consen  108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS  185 (839)
T ss_pred             CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence            999999999976   33333443 344577888887654  689999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      |.-...|+++...|.+++||+|.....                                                     
T Consensus       186 p~~~~~F~s~~dsG~lqlWDlRqp~r~-----------------------------------------------------  212 (839)
T KOG0269|consen  186 PGYGNKFASIHDSGYLQLWDLRQPDRC-----------------------------------------------------  212 (839)
T ss_pred             cCCCceEEEecCCceEEEeeccCchhH-----------------------------------------------------
Confidence            987778999999999999999853110                                                     


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                       ...+.+|.++|.++.|+|++.+|||||.|+.|+|||+.+.+.-.  .+++.. .....++.+.
T Consensus       213 -----------------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~--~~tInT-iapv~rVkWR  272 (839)
T KOG0269|consen  213 -----------------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP--KHTINT-IAPVGRVKWR  272 (839)
T ss_pred             -----------------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc--eeEEee-cceeeeeeec
Confidence                             01246899999999999999999999999999999998654311  111111 1234467777


Q ss_pred             CCCcEEEEeC----CCceEEEEccCC-ceEeeecccccceEEEEEcC-CCCeEEEeecCCcEEEeCCC
Q 013545          360 QDPAVVFVPC----MTAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       360 ~~~~~~~~~~----~~~~~~wd~~~~-~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~~i~vW~~~  421 (441)
                      |+....+..|    ...|++||+... -+..+|..|...++.++|-. |-..|.|++.|++|..-...
T Consensus       273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            7765544333    358999999664 45678999999999999976 44568899999997655443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.4e-22  Score=181.90  Aligned_cols=254  Identities=19%  Similarity=0.255  Sum_probs=193.1

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      ....|+++|+=+.|++ +|.+|||++.|.+..||++..... .....   +..+|..+.++|+.   .+|++++.|..+.
T Consensus       219 il~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd---ryLlaCg~~e~~~  294 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD---RYLLACGFDEVLS  294 (519)
T ss_pred             hHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC---CeEEecCchHhee
Confidence            3458999999988887 899999999999999998754332 12222   33456677778764   4788888888999


Q ss_pred             EEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          174 LCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       174 vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      +||..+|.+...+. +|...+.+.+|.||+.. |++|+.|++|..||+.... ...+                       
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~-~~~W-----------------------  349 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI-LGNW-----------------------  349 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch-hhcc-----------------------
Confidence            99999999876664 56788999999999985 7999999999999986320 0000                       


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  332 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd  332 (441)
                                                       .              ......|.+|+.++||+++++-+.|..|++++
T Consensus       350 ---------------------------------~--------------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~  382 (519)
T KOG0293|consen  350 ---------------------------------E--------------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN  382 (519)
T ss_pred             ---------------------------------c--------------ccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence                                             0              00123488999999999999999999999999


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccc--eEEEEEcC-CCCeEEE
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSS-QDQELYT  408 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~--v~~v~fsp-d~~~l~s  408 (441)
                      .++....-     +.....+...+..+.++.++.+.- ..++.+||+...+.+..+.||+..  |-.-+|-- +..+++|
T Consensus       383 ~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS  457 (519)
T KOG0293|consen  383 REARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS  457 (519)
T ss_pred             hhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence            88643210     111233455678888888877654 478999999999999999999864  33334554 4588999


Q ss_pred             eecCCcEEEeCCCCCCCCCccCCc
Q 013545          409 GGNDRQILVWCPSRHISDGVDAGP  432 (441)
Q Consensus       409 ~s~D~~i~vW~~~~~~~~~~~~~~  432 (441)
                      ||+|+.|+||+-.++++..++.|-
T Consensus       458 GSED~kvyIWhr~sgkll~~LsGH  481 (519)
T KOG0293|consen  458 GSEDSKVYIWHRISGKLLAVLSGH  481 (519)
T ss_pred             cCCCceEEEEEccCCceeEeecCC
Confidence            999999999999999988887774

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-21  Score=191.81  Aligned_cols=251  Identities=19%  Similarity=0.308  Sum_probs=180.7

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCC-cccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRA-TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      +|+..-+.|+|.| +|++|.|++.||.|++|+.... +.++.                 ..-|...|.+++.   ...+|
T Consensus        11 aht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~t-----------------i~~~g~~v~~ia~---~s~~f   69 (933)
T KOG1274|consen   11 AHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPET-----------------IDISGELVSSIAC---YSNHF   69 (933)
T ss_pred             hccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCch-----------------hhccCceeEEEee---cccce
Confidence            7998999999996 5679999999999999997655 22210                 0114445655555   34599


Q ss_pred             EEEeCCCcEEEEECCCCe---EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          120 VTGSYDHYVKVWDTNCTR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      ++|+.|++|.++.+-.+.   .+..+.++  ...++++..   ..++|.|+.|..|++-++.+....+.+++|.++|.+|
T Consensus        70 ~~~s~~~tv~~y~fps~~~~~iL~Rftlp--~r~~~v~g~---g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGEEDTILARFTLP--IRDLAVSGS---GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             EEeeccceEEEeeCCCCCccceeeeeecc--ceEEEEecC---CcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence            999999999999876554   34555544  455666653   3589999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      .|+|.+. +||+.+.||.|++||+.++.+..++......                                         
T Consensus       145 ~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-----------------------------------------  182 (933)
T KOG1274|consen  145 SYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-----------------------------------------  182 (933)
T ss_pred             eEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCcc-----------------------------------------
Confidence            9999998 6899999999999999876544333110000                                         


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                            ..                ......+..++|+|+|..++....|+.|++|+.........      +.       
T Consensus       183 ------n~----------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~------Lr-------  227 (933)
T KOG1274|consen  183 ------NE----------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK------LR-------  227 (933)
T ss_pred             ------cc----------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee------ec-------
Confidence                  00                00023467789999998999999999999999876542211      00       


Q ss_pred             EeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          357 ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                         +                           ..|...+.++.|||.|+|||+++.|+.|.|||.+++.
T Consensus       228 ---~---------------------------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~  265 (933)
T KOG1274|consen  228 ---D---------------------------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE  265 (933)
T ss_pred             ---c---------------------------cccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence               0                           1122336777777777777777777777777776533

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=1.7e-22  Score=201.58  Aligned_cols=246  Identities=22%  Similarity=0.340  Sum_probs=188.8

Q ss_pred             cceeEEEEeeCCCCEEEEEe--CCCcEEEEECCC------------CeEE-EEEecCCeeEEEeeccCCCCccEEEEEeC
Q 013545          104 YAISSAIWYPVDTGLFVTGS--YDHYVKVWDTNC------------TRVV-MNFKMPGKVYRTAMSPLAASHMLIAAGTE  168 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs--~D~~i~iWd~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~las~s~  168 (441)
                      ..|.++.++| ++..+||||  .|+.++||+...            ...+ ....+.+.+.++.|++++   .+||+|++
T Consensus        14 ~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG---~~lAsGSD   89 (942)
T KOG0973|consen   14 KSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG---SYLASGSD   89 (942)
T ss_pred             eeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC---CeEeeccC
Confidence            3477777776 899999999  999999997531            1111 122356778888899865   48999999


Q ss_pred             CCcEEEEECCC----------C--------ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545          169 DVQVRLCDIAS----------G--------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (441)
Q Consensus       169 d~~I~vwdl~~----------~--------~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~  230 (441)
                      |..|.+|....          |        +....+.+|...|..+.|+|++. +|||+|-|++|-|||.++.+++.+  
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~v--  166 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKV--  166 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeee--
Confidence            99999999872          1        24567899999999999999987 689999999999999886543332  


Q ss_pred             cCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEE
Q 013545          231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL  310 (441)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  310 (441)
                                                                                           ..+|.+.|-.+
T Consensus       167 ---------------------------------------------------------------------l~~H~s~VKGv  177 (942)
T KOG0973|consen  167 ---------------------------------------------------------------------LRGHQSLVKGV  177 (942)
T ss_pred             ---------------------------------------------------------------------eecccccccce
Confidence                                                                                 34688889999


Q ss_pred             EEccCCCEEEEeecCCcEEEeeCCCCC---ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-----CceEEEEccCCc
Q 013545          311 KVTEDGMYLLSAGSDSRIRLWDVESGR---NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-----TAVKAFDIWSGK  382 (441)
Q Consensus       311 ~~s~dg~~l~sgs~D~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~wd~~~~~  382 (441)
                      .|.|-|+||||=+.|++|++|.+..-.   .....|+... ....-.++.++|||.+++++..     ..+.+.+-.+++
T Consensus       178 s~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~-~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk  256 (942)
T KOG0973|consen  178 SWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP-LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK  256 (942)
T ss_pred             EECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC-CcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence            999999999999999999999965411   0111111100 0112246788999999988743     368888888888


Q ss_pred             eEeeecccccceEEEEEcCC-----CC------------eEEEeecCCcEEEeCCCCCCCC
Q 013545          383 TCLTFRGHYEYVNCCCFSSQ-----DQ------------ELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       383 ~~~~l~gh~~~v~~v~fspd-----~~------------~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      .-..|-||.+++.+++|+|.     .+            .+|+||.|++|-||.-...+..
T Consensus       257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence            89999999999999999992     12            5778999999999988766644

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=6.1e-22  Score=188.12  Aligned_cols=240  Identities=22%  Similarity=0.333  Sum_probs=191.8

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccC-cccceeEEEEeeCCCCEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~  120 (441)
                      +...|+++.|++ +|.+|+.|..+|+|.|||+.+.+...                 ...+ |...|.+++|.   ...+.
T Consensus       216 ~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~-----------------~~~~~h~~rvg~laW~---~~~ls  274 (484)
T KOG0305|consen  216 GEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTR-----------------TLRGSHASRVGSLAWN---SSVLS  274 (484)
T ss_pred             CCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccc-----------------cccCCcCceeEEEecc---CceEE
Confidence            478999999996 68899999999999999987554321                 1124 88889999996   56899


Q ss_pred             EEeCCCcEEEEECCCCeEEEE-Ee-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          121 TGSYDHYVKVWDTNCTRVVMN-FK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      +|+.|+.|..+|++..+.... +. +...+..+.++++.   .++|+|+.|+.+.|||.....+...+..|.+.|.+++|
T Consensus       275 sGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~---~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  275 SGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG---NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             EecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC---CeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence            999999999999987765444 32 23446667777754   58999999999999999888899999999999999999


Q ss_pred             ecCCCcEEEEee--cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          199 STSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       199 sp~~~~~l~s~s--~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      +|-.+.+||+|+  .|+.|++||+.++.++..++.                                             
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---------------------------------------------  386 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---------------------------------------------  386 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---------------------------------------------
Confidence            999888999965  699999999987765443211                                             


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEe--ecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA--GSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg--s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                                                 .+-|.+|.|++..+.|+++  -.+..|.||+..+.+.    ...+..+.....
T Consensus       387 ---------------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~----~~~l~gH~~RVl  435 (484)
T KOG0305|consen  387 ---------------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL----VAELLGHTSRVL  435 (484)
T ss_pred             ---------------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce----eeeecCCcceeE
Confidence                                       1348999999999887764  5667899999987543    234445667788


Q ss_pred             EEEeeCCCcEEEEeCC-CceEEEEccCC
Q 013545          355 QLATTQDPAVVFVPCM-TAVKAFDIWSG  381 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~  381 (441)
                      .++.+||++.+++++. .++++|+++..
T Consensus       436 ~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  436 YLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEECCCCCEEEEecccCcEEeccccCC
Confidence            8999999999988765 79999999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=2.7e-21  Score=164.24  Aligned_cols=234  Identities=18%  Similarity=0.288  Sum_probs=182.2

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ...+|.+.|-.++++|...+.+++++.|.+|++||...++..            ..++.     ..+.+ -+.|+| +++
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~------------~~i~~-----~~eni-~i~wsp-~g~  119 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT------------ARIET-----KGENI-NITWSP-DGE  119 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE------------EEeec-----cCcce-EEEEcC-CCC
Confidence            456899999999999998899999999999999999866532            11111     11122 356776 788


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +++.++.|..|.+.|.++.+.....++.-.+.-+.+..   ++.++..-...|.|.|.....-+++++++.|+....||.
T Consensus       120 ~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~---~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~  196 (313)
T KOG1407|consen  120 YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN---SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIE  196 (313)
T ss_pred             EEEEecCcccEEEEEecccceeehhcccceeeeeeecC---CCCEEEEecCCceEEEEeccccccccccccCCcceEEEE
Confidence            99999999999999999988887777666666666663   233444445578999999999999999999999999999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      |+|+|++ ||+|+.|-.+-+||+...-|.+.+.                                               
T Consensus       197 f~p~Gry-fA~GsADAlvSLWD~~ELiC~R~is-----------------------------------------------  228 (313)
T KOG1407|consen  197 FDPDGRY-FATGSADALVSLWDVDELICERCIS-----------------------------------------------  228 (313)
T ss_pred             ECCCCce-EeeccccceeeccChhHhhhheeec-----------------------------------------------
Confidence            9999986 7999999999999998665555431                                               


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                              -+.=+|+.|.||.||++||+||.|-.|-|=++++|.....    + -..+....++
T Consensus       229 ------------------------RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e----I-~~~~~t~tVA  279 (313)
T KOG1407|consen  229 ------------------------RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE----I-PCEGPTFTVA  279 (313)
T ss_pred             ------------------------cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE----e-eccCCceeEE
Confidence                                    1223699999999999999999999999999999875321    1 1234556788


Q ss_pred             eeCCCcEEEEeCC
Q 013545          358 TTQDPAVVFVPCM  370 (441)
Q Consensus       358 ~~~~~~~~~~~~~  370 (441)
                      +.|...+++.+|.
T Consensus       280 WHPk~~LLAyA~d  292 (313)
T KOG1407|consen  280 WHPKRPLLAYACD  292 (313)
T ss_pred             ecCCCceeeEEec
Confidence            8888777777665

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.2e-21  Score=184.83  Aligned_cols=310  Identities=18%  Similarity=0.257  Sum_probs=206.0

Q ss_pred             CCCceeE--EEccCCC--CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           42 HKGSINS--LQVDLTE--ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        42 H~~~V~~--l~~s~~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      |.-.|+-  ..|++..  ...|+-+.+||.|.++|.+....-       .....    ......|..+|..+.|.| ...
T Consensus        46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~----lk~~~aH~nAifDl~wap-ge~  113 (720)
T KOG0321|consen   46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQ----LKKPLAHKNAIFDLKWAP-GES  113 (720)
T ss_pred             CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhh----hcccccccceeEeeccCC-Cce
Confidence            3345544  5566433  457999999999999998643210       00000    012347999999999998 566


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEE---EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-------------
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMN---FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-------------  181 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-------------  181 (441)
                      +|++++.|.++|+||+++..++..   +.+.+.+.+.+|.+..  ..+|++|+-||.|.|||+.-..             
T Consensus       114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n--~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~  191 (720)
T KOG0321|consen  114 LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN--PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG  191 (720)
T ss_pred             eEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC--CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence            899999999999999998887654   3455677788888764  4689999999999999985321             


Q ss_pred             -------ee-------eeecCCCCCeEE---EEEecCCCcEEEEeec-CCcEEEEEcCCCceeeEeccCCccccCCCCcc
Q 013545          182 -------IS-------QTLSGHRDGIMT---VEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL  243 (441)
Q Consensus       182 -------~~-------~~l~~h~~~v~~---v~fsp~~~~~l~s~s~-Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~  243 (441)
                             ..       ..-..|...|.+   +-+..|.. .|||+|. |+.||+||+|+..+....+.    .+.     
T Consensus       192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep----~~~-----  261 (720)
T KOG0321|consen  192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEP----RGS-----  261 (720)
T ss_pred             cccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCC----Ccc-----
Confidence                   00       011233444444   44445544 5788887 99999999997643211100    000     


Q ss_pred             cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee
Q 013545          244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG  323 (441)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  323 (441)
                                                                + .+..    ..    ...-.+.++....-|.+|.+..
T Consensus       262 ------------------------------------------~-~~~t----~s----krs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  262 ------------------------------------------D-KYPT----HS----KRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             ------------------------------------------c-CccC----cc----cceeeeEEEEecCCCCeEEEEe
Confidence                                                      0 0000    00    0011266788888889988888


Q ss_pred             cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc-eEeeecccccceEEEEEcC
Q 013545          324 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~-~~~~l~gh~~~v~~v~fsp  401 (441)
                      .|++|++||+.+............+....-+....++++..++++.. ..+.+|.+.+-+ ....+.||.-.|++|+|.|
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            89999999998754322111111111122234566789999888866 689999997754 4567899999999999998


Q ss_pred             CC-CeEEEeecCCcEEEeCCCCCCCC
Q 013545          402 QD-QELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       402 d~-~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      .. .-++||++|..++||++..+.-+
T Consensus       371 S~~t~v~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  371 SATTPVATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             ccCCCceeeccCcceEEEeccCchhh
Confidence            64 45889999999999999665544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=2.7e-22  Score=184.84  Aligned_cols=252  Identities=19%  Similarity=0.259  Sum_probs=176.4

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEE----EEE-ecC-CeeEEEeeccCCCCccEEEEEeCCCcE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV----MNF-KMP-GKVYRTAMSPLAASHMLIAAGTEDVQV  172 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~----~~~-~~~-~~~~~~~~~~~~~~~~~las~s~d~~I  172 (441)
                      ..+|+..|.++.+-| .|-+|+|||.|-+|++||+......    ..+ +.+ ..+.++.+++.+  + .|++.+....+
T Consensus       163 l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg--~-~iLvvsg~aqa  238 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG--D-QILVVSGSAQA  238 (641)
T ss_pred             ccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC--C-eEEEEecCcce
Confidence            457889999999877 5889999999999999998643321    111 122 236777788743  2 33334445789


Q ss_pred             EEEECCCCceee------------eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCC
Q 013545          173 RLCDIASGAISQ------------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRR  239 (441)
Q Consensus       173 ~vwdl~~~~~~~------------~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~  239 (441)
                      +|+|-.......            .-+||...++|..|+|..+..|+|++.||++||||+..-+ ...+++...      
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~------  312 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP------  312 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc------
Confidence            999975433221            2369999999999999988889999999999999987532 222221100      


Q ss_pred             CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545          240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  319 (441)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  319 (441)
                                                                                  ..+.--+++.++|+|||+.|
T Consensus       313 ------------------------------------------------------------~~g~Rv~~tsC~~nrdg~~i  332 (641)
T KOG0772|consen  313 ------------------------------------------------------------AGGKRVPVTSCAWNRDGKLI  332 (641)
T ss_pred             ------------------------------------------------------------CCCcccCceeeecCCCcchh
Confidence                                                                        00112358889999999999


Q ss_pred             EEeecCCcEEEeeCCCCCceeeeeeeEEeccC--cceEEEeeCCCcEEEEeCC-CceEEEEccCC-ceEeeecccc--cc
Q 013545          320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTS--KPIQLATTQDPAVVFVPCM-TAVKAFDIWSG-KTCLTFRGHY--EY  393 (441)
Q Consensus       320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~-~~~~~l~gh~--~~  393 (441)
                      |+|..||.|.+|+..+.... ..+.....+..  .+.+++|++||.++++-+. .++++||+..- +++.+..|-.  .+
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~  411 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP  411 (641)
T ss_pred             hhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence            99999999999997543211 12222333333  5678999999999888655 79999999764 4555555544  34


Q ss_pred             eEEEEEcCCCCeEEEeecC------CcEEEeCCC
Q 013545          394 VNCCCFSSQDQELYTGGND------RQILVWCPS  421 (441)
Q Consensus       394 v~~v~fspd~~~l~s~s~D------~~i~vW~~~  421 (441)
                      -++++||||.+.|+||..-      +++.+++.-
T Consensus       412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             CCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence            6889999999999997542      445555543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=8.1e-21  Score=174.76  Aligned_cols=300  Identities=18%  Similarity=0.256  Sum_probs=208.9

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECC--CCcc---cCCCCce-------------eccceeEEeec-----c
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ--RATD---YEGGGHI-------------AKHRSVFVVDK-----Q   97 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~--~~~~---~~~~~~~-------------~~~~~~~~~~~-----~   97 (441)
                      .|.+.|++|+.- .+| .|+||+.|..|..||-.  +..+   ++..+.+             .+.+.++...-     .
T Consensus       285 aH~ggv~~L~~l-r~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  285 AHDGGVFSLCML-RDG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             ecCCceEEEEEe-cCc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence            899999999986 456 48889999999999832  1111   1111111             01111111110     1


Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      .-.+|..+...++.+| +.++++|++.|+.+++|+  ..+++.+.....+..+..|+|.+    .+|.|+..|...+.|.
T Consensus       363 ~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w~V~d~  435 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG----VVAVGTATGRWFVLDT  435 (626)
T ss_pred             EEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc----eEEEeeccceEEEEec
Confidence            1248999998888887 567999999999999999  56677777777788888898853    7899999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ++...+..-.. ..++++++|+|+|. +||.|+.|+.|.||-+...+.....                            
T Consensus       436 e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r----------------------------  485 (626)
T KOG2106|consen  436 ETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSR----------------------------  485 (626)
T ss_pred             ccceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEE----------------------------
Confidence            99666544444 88999999999998 5799999999999987643211000                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                             .  ...|..+|+.|+||+|+++|.+-|.|..|-+|.....+
T Consensus       486 ---------------------------------------~--~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~  524 (626)
T KOG2106|consen  486 ---------------------------------------V--GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK  524 (626)
T ss_pred             ---------------------------------------e--eeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence                                                   0  01233689999999999999999999999999554332


Q ss_pred             ceee-------------eeeeEEeccCc-ceEEEeeCCCcEEEEeCC-CceEEEEc---cCCceEeeecccccceEEEEE
Q 013545          338 NTLV-------------NFETVRLQTSK-PIQLATTQDPAVVFVPCM-TAVKAFDI---WSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       338 ~~~~-------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~wd~---~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      ....             .|+......+. ...++.+....+++++-. +.+++|..   .-....+++.||.+.|.+|+|
T Consensus       525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F  604 (626)
T KOG2106|consen  525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF  604 (626)
T ss_pred             ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE
Confidence            2111             01110000111 112223333444444333 46888864   234556789999999999999


Q ss_pred             cCCCCeEEEeecCCcEEEeCC
Q 013545          400 SSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       400 spd~~~l~s~s~D~~i~vW~~  420 (441)
                      +.+..+|.+.+.|.+|..|++
T Consensus       605 l~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  605 LCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eeCCceEEecCCCceEEEEEe
Confidence            999999998889999999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=7.4e-21  Score=181.11  Aligned_cols=378  Identities=19%  Similarity=0.267  Sum_probs=225.4

Q ss_pred             eecCCCCceeEEEccCCCC--cEEEEeeCCCcEEEEECCCCcccC---C--CCceeccceeEEee---------cccccC
Q 013545           38 IVSPHKGSINSLQVDLTEE--RYLLSGASDSSVAVYDVQRATDYE---G--GGHIAKHRSVFVVD---------KQHEHG  101 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~~~~---~--~~~~~~~~~~~~~~---------~~~~~~  101 (441)
                      .+.||.+.|-+|+|....+  -+|+|+|.|..||||.+.-.....   .  .-.+....+++...         .....|
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G  265 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG  265 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence            3679999999999986544  378999999999999874322100   0  00011112222221         123359


Q ss_pred             cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC--eEEEEEec---C---CeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFKM---P---GKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~~---~---~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      |.+-|.++-|.| .+-.|+|+|.|+++.+|...+.  --+-...+   .   +..+...+++..   ..+++-+..|-.+
T Consensus       266 HeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~---~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  266 HEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS---NVIIAHGRTGGFH  341 (764)
T ss_pred             cccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC---CEEEEecccCcEE
Confidence            999999999998 4678999999999999987544  22222222   1   234566666653   3555566778899


Q ss_pred             EEECCCCc---eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC-CC----------------ceeeEeccCC
Q 013545          174 LCDIASGA---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RA----------------GCFRVLDQSQ  233 (441)
Q Consensus       174 vwdl~~~~---~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~-~~----------------~~~~~~~~~~  233 (441)
                      +|-.+...   ....+.||.+.|..|+|+|.|++ |+|.|.|.+-|+|--- ..                .|+..+....
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence            99944432   23457899999999999999995 6799999999998542 00                1221111100


Q ss_pred             ccccC-CCCcccccccc--------cCccCCcCCC--CCC--cccCCCCCccccC-----cccc------------cC--
Q 013545          234 SQLGR-RPPLLKRKSLS--------AGQNSSVKPR--APQ--KRSANGNGVRQSS-----VGRI------------PA--  281 (441)
Q Consensus       234 ~~~~~-~~~~~~~~~~~--------~~~~~~~~~~--~~~--~~~~~~~~~~~~~-----~~~~------------~~--  281 (441)
                      .-+.. ..........+        .-........  .+.  ..+.-|...+...     .+..            +.  
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence            00000 00000000000        0000000000  000  0000000000000     0000            00  


Q ss_pred             -CCCccccc-CCCcccccccceeeccCeEEEEEccCCCEEEEeecCC-----cEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          282 -KGSVRQRL-HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-----RIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       282 -~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                       ..++...+ ..-...+...+.+|.-.|.+++.+|+|+.+||+..-.     -|++|+..+-...    ..+..+.-...
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~----~~L~~HsLTVT  576 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV----QELEGHSLTVT  576 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh----heecccceEEE
Confidence             00000000 0011112234568999999999999999999987654     5899998764321    12233344456


Q ss_pred             EEEeeCCCcEEEEeCC-CceEEEEccCCce----EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKT----CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~----~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      +++++||++++++++. .++.+|..-+...    ...++.|+.-||++.|+||+++++|+|.|++|++|..+..+
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~  651 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR  651 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence            7999999999998877 4778887633221    23478999999999999999999999999999999887763

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=7.6e-22  Score=192.32  Aligned_cols=204  Identities=21%  Similarity=0.303  Sum_probs=159.5

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.||.+.|..|.||-  ..+|+|+|.|.|+|||++....++          .++        .|.+-|+|++|+|.|..
T Consensus       364 ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL----------~~F--------~HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  364 EFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECL----------KVF--------SHNDFVTCVAFNPVDDR  423 (712)
T ss_pred             hhhccchhheeccccc--CCeeEeccccccEEeecCCCccee----------eEE--------ecCCeeEEEEecccCCC
Confidence            3569999999999983  459999999999999998755432          111        59999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec---------C
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---------G  188 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~---------~  188 (441)
                      +|+|||.|+.||||++...+++.-..+..-+.++++.|++.   ..+.|+.+|.+++|+....++.....         .
T Consensus       424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk---~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~  500 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK---GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ  500 (712)
T ss_pred             cEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCc---eEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence            99999999999999999888876666777789999999754   67789999999999998877654331         1


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      |. .|+.+.|.|.....++..+.|..|||+|.+.-..+..|+...                                   
T Consensus       501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-----------------------------------  544 (712)
T KOG0283|consen  501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-----------------------------------  544 (712)
T ss_pred             Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-----------------------------------
Confidence            33 799999998765433445789999999997533222221100                                   


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                                                        ....-....|+.||++|++++.|..|++|+..
T Consensus       545 ----------------------------------n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  545 ----------------------------------NTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ----------------------------------cCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence                                              01122345799999999999999999999974

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=3e-23  Score=198.14  Aligned_cols=254  Identities=20%  Similarity=0.386  Sum_probs=195.3

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~  136 (441)
                      .++.....+-.+++||.+..                       ..|...|.++.. ...+..+++|++|..+-+|.+...
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~-----------------------~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp   60 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREF-----------------------VAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKP   60 (825)
T ss_pred             cccceeeeeeccccccchhh-----------------------hhhhhhhceeee-eccceeeccCCCceeeccccccCC
Confidence            45666667777788886532                       257777777766 335678999999999999998777


Q ss_pred             eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcE
Q 013545          137 RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI  215 (441)
Q Consensus       137 ~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I  215 (441)
                      ..++.+. +.+++.++.|.+.   ..+|++|+.+|.|++|||+.++.+++|.||...+.+|.|+|-+.+ +|+|+.|..+
T Consensus        61 ~~i~S~~~hespIeSl~f~~~---E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~  136 (825)
T KOG0267|consen   61 NAITSLTGHESPIESLTFDTS---ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDL  136 (825)
T ss_pred             chhheeeccCCcceeeecCcc---hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE-eccccccccc
Confidence            7776655 4567888888774   458999999999999999999999999999999999999999975 6999999999


Q ss_pred             EEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccc
Q 013545          216 RFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS  295 (441)
Q Consensus       216 ~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (441)
                      ++||++..+|...+                                                                  
T Consensus       137 ~iwD~Rk~Gc~~~~------------------------------------------------------------------  150 (825)
T KOG0267|consen  137 KIWDIRKKGCSHTY------------------------------------------------------------------  150 (825)
T ss_pred             eehhhhccCceeee------------------------------------------------------------------
Confidence            99999976654433                                                                  


Q ss_pred             ccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceE
Q 013545          296 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVK  374 (441)
Q Consensus       296 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  374 (441)
                           .+|..-|..+.|+|+|+++++|+.|.++++||...++.. ..|.   .+......+-+.+..-++..++. .+++
T Consensus       151 -----~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  151 -----KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             -----cCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-cccc---cccccccccccCchhhhhccCCCCceee
Confidence                 236667889999999999999999999999999877532 1222   12222333333333323333332 5899


Q ss_pred             EEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          375 AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       375 ~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      .||+++.+.......-...|.|++|+||++.+++|..+.
T Consensus       222 f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  222 FWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            999998888877777788999999999999999886653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1e-21  Score=178.24  Aligned_cols=254  Identities=21%  Similarity=0.323  Sum_probs=178.7

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcc-cCC--CCceeccceeEEee-cccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEE
Q 013545           56 ERYLLSGASDSSVAVYDVQRATD-YEG--GGHIAKHRSVFVVD-KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW  131 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iW  131 (441)
                      ++|+|-|..|..|.|||+.-... ++.  .+...+........ .....+|+.+|..+.+...-.++|||||.|.||++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            57999999999999999853221 110  00000000000000 011348999999999877667899999999999999


Q ss_pred             ECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEee
Q 013545          132 DTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG  210 (441)
Q Consensus       132 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s  210 (441)
                      |+.++++...+. +.+++..+.|++..+  ..|++|+.|++|.+.|++........=.-.+.|-.++|.|.....++++.
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence            999999998888 467799999998754  58999999999999999853222111123567889999999888888999


Q ss_pred             cCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccccc
Q 013545          211 CDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL  289 (441)
Q Consensus       211 ~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (441)
                      .||+++-+|+|... ++.                                                              
T Consensus       350 ddG~v~~~D~R~~~~~vw--------------------------------------------------------------  367 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVW--------------------------------------------------------------  367 (463)
T ss_pred             CCceEEeeecCCCCCcee--------------------------------------------------------------
Confidence            99999999999641 111                                                              


Q ss_pred             CCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe
Q 013545          290 HPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP  368 (441)
Q Consensus       290 ~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (441)
                               ...+|.++|.+|++++.- .+++|+|.|++|++|++.........-+.+.                     
T Consensus       368 ---------t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~---------------------  417 (463)
T KOG0270|consen  368 ---------TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK---------------------  417 (463)
T ss_pred             ---------EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc---------------------
Confidence                     135799999999998764 4788999999999999875433211100000                     


Q ss_pred             CCCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEeecCCcEEEeCCCCCCC
Q 013545          369 CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       369 ~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~s~D~~i~vW~~~~~~~  425 (441)
                                            -+...|.++.|+-- +|+.||..+.++|||..++..
T Consensus       418 ----------------------~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  418 ----------------------LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ----------------------ccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence                                  01255666777653 466777777888998876653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=1.7e-21  Score=168.15  Aligned_cols=232  Identities=18%  Similarity=0.280  Sum_probs=172.7

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe------EEEEEe------c-CCe---eEEEeeccCCCCccEEE
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR------VVMNFK------M-PGK---VYRTAMSPLAASHMLIA  164 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~------~~~~~~------~-~~~---~~~~~~~~~~~~~~~la  164 (441)
                      -|.+.|+++.+-+..+.+++||+.|+.|-+||++.-.      .+....      + .++   +..+.+.|..  .-++.
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D--tGmFt  118 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID--TGMFT  118 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec--Cceee
Confidence            5888999999988889999999999999999987533      111111      1 122   3445566654  34788


Q ss_pred             EEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC--CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCc
Q 013545          165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPL  242 (441)
Q Consensus       165 s~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~--~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~  242 (441)
                      +++-|..++|||.+|-+....|. -.+.|.+-+++|-.  .+++|+|..|-.||+=|+.++.+-.+              
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--------------  183 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--------------  183 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--------------
Confidence            99999999999999987766664 45677777777753  45788888899999999988754332              


Q ss_pred             ccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEE
Q 013545          243 LKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLS  321 (441)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s  321 (441)
                                                                               +.+|.+.|.+|.|+|...+ |+|
T Consensus       184 ---------------------------------------------------------LsGHr~~vlaV~Wsp~~e~vLat  206 (397)
T KOG4283|consen  184 ---------------------------------------------------------LSGHRDGVLAVEWSPSSEWVLAT  206 (397)
T ss_pred             ---------------------------------------------------------eccccCceEEEEeccCceeEEEe
Confidence                                                                     3578889999999999876 679


Q ss_pred             eecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          322 AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       322 gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      ||.||+||+||++.....+   ..+..+...                           .-..+++-.+|.+.|+.++|+.
T Consensus       207 gsaDg~irlWDiRrasgcf---~~lD~hn~k---------------------------~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  207 GSADGAIRLWDIRRASGCF---RVLDQHNTK---------------------------RPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             cCCCceEEEEEeeccccee---EEeecccCc---------------------------cCccccccccccceeeeeeecc
Confidence            9999999999998643222   121111100                           0011223457999999999999


Q ss_pred             CCCeEEEeecCCcEEEeCCCCCCCCCccCCccCCc
Q 013545          402 QDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQ  436 (441)
Q Consensus       402 d~~~l~s~s~D~~i~vW~~~~~~~~~~~~~~~~~~  436 (441)
                      |+.++++++.|..+|+|+...++..-...||.-.+
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n  291 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN  291 (397)
T ss_pred             cchhhhhccCccceEEeecccCccccccccccccc
Confidence            99999999999999999999999887777776543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=173.78  Aligned_cols=212  Identities=24%  Similarity=0.411  Sum_probs=160.8

Q ss_pred             CcccceeEEEEeeC-CCCEEEEEeCCCcEEEEECCC----------------CeEEEEEec-CCeeEEEeeccCCCCccE
Q 013545          101 GHKYAISSAIWYPV-DTGLFVTGSYDHYVKVWDTNC----------------TRVVMNFKM-PGKVYRTAMSPLAASHML  162 (441)
Q Consensus       101 ~h~~~V~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~  162 (441)
                      +|.+.++-+...+. +..+.|+=+..|.|+|||+..                .+++.++.. .+.-+.+.|+|...+  .
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g--~  226 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG--R  226 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc--c
Confidence            67777887777665 345667778899999999742                122333332 234577888885433  4


Q ss_pred             EEEEeCCCcEEEEECCCCce---eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC
Q 013545          163 IAAGTEDVQVRLCDIASGAI---SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR  239 (441)
Q Consensus       163 las~s~d~~I~vwdl~~~~~---~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~  239 (441)
                      |++|.--+.|++|...+|.-   ...+.+|+..|..+.|||.-+.+|+|||.||+|||||+|.+..-..           
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~-----------  295 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA-----------  295 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce-----------
Confidence            67776678899999988753   2457789999999999999888999999999999999997521000           


Q ss_pred             CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545          240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  319 (441)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  319 (441)
                                                                                ...++|.+.|+-|.|+.+-.+|
T Consensus       296 ----------------------------------------------------------~~~kAh~sDVNVISWnr~~~lL  317 (440)
T KOG0302|consen  296 ----------------------------------------------------------VSTKAHNSDVNVISWNRREPLL  317 (440)
T ss_pred             ----------------------------------------------------------eEeeccCCceeeEEccCCccee
Confidence                                                                      0024688889999999998899


Q ss_pred             EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE
Q 013545          320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      |+|+.||+++|||++.-+                                          .++.+.+|.-|+.+|+||.|
T Consensus       318 asG~DdGt~~iwDLR~~~------------------------------------------~~~pVA~fk~Hk~pItsieW  355 (440)
T KOG0302|consen  318 ASGGDDGTLSIWDLRQFK------------------------------------------SGQPVATFKYHKAPITSIEW  355 (440)
T ss_pred             eecCCCceEEEEEhhhcc------------------------------------------CCCcceeEEeccCCeeEEEe
Confidence            999999999999997532                                          12344566779999999999


Q ss_pred             cCCC-CeEEEeecCCcEEEeCCCCCCC
Q 013545          400 SSQD-QELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       400 spd~-~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +|.. ..|+++|+|.+|.|||++..+-
T Consensus       356 ~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  356 HPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             ccccCceEEeccCCCcEEEEEeeccCC
Confidence            9964 5577889999999999986554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.1e-21  Score=167.28  Aligned_cols=239  Identities=23%  Similarity=0.397  Sum_probs=164.0

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC-CC
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-TG  117 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~  117 (441)
                      +..|.+++++++.+   +.|+||||.|.+|+|||..+....                 +....|.+.|+++.|.++- ..
T Consensus        39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql-----------------g~ll~HagsitaL~F~~~~S~s   98 (362)
T KOG0294|consen   39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL-----------------GILLSHAGSITALKFYPPLSKS   98 (362)
T ss_pred             ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh-----------------cceeccccceEEEEecCCcchh
Confidence            45899999999996   579999999999999999765432                 1123589999999997743 23


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMT  195 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~  195 (441)
                      .|+||++||.|.+|++....++..++. .+.+..++++|.+   .+..+.+.|+.+++|||-+|+....++ .|..  +.
T Consensus        99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~---KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~  173 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG---KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TL  173 (362)
T ss_pred             heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC---ceEEEEcCCceeeeehhhcCccceeeccCCcc--ee
Confidence            799999999999999999888887774 5678899999854   467777889999999999998665554 2332  44


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      |.|+|.|+++ +-++. ..|-+|.+.+.+.+..++......       ....+.                  +.-+....
T Consensus       174 v~w~~~Gd~F-~v~~~-~~i~i~q~d~A~v~~~i~~~~r~l-------~~~~l~------------------~~~L~vG~  226 (362)
T KOG0294|consen  174 VSWSPQGDHF-VVSGR-NKIDIYQLDNASVFREIENPKRIL-------CATFLD------------------GSELLVGG  226 (362)
T ss_pred             eEEcCCCCEE-EEEec-cEEEEEecccHhHhhhhhccccce-------eeeecC------------------CceEEEec
Confidence            9999999964 44443 579999988766555443211000       000000                  00000000


Q ss_pred             -cccccCCCCcccccCCCcccccccceeeccCeEEEEE--ccCCCEEEEeecCCcEEEeeCCCC
Q 013545          276 -VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV--TEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                       ++.+.       ............+.+|...|-++.+  .|++.+|+|+|.||.|++||++..
T Consensus       227 d~~~i~-------~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  227 DNEWIS-------LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CCceEE-------EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence             00000       0000001122345789999998873  367899999999999999999864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=7.4e-21  Score=173.34  Aligned_cols=287  Identities=19%  Similarity=0.297  Sum_probs=209.0

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC-EEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG-LFVT  121 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-~l~s  121 (441)
                      .+.|+++.|+|. -..|++|+.||+++||-+..-...       ...++        +--+.+|.++.|.| +|. ++++
T Consensus       213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~-------~lqS~--------~l~~fPi~~a~f~p-~G~~~i~~  275 (514)
T KOG2055|consen  213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNP-------KLQSI--------HLEKFPIQKAEFAP-NGHSVIFT  275 (514)
T ss_pred             cCCceEEEecCC-CceEEEecCCCcEEEEEecCccCh-------hheee--------eeccCccceeeecC-CCceEEEe
Confidence            379999999974 678999999999999988643321       11111        12345788888887 555 9999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCC----eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          122 GSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +|.-..+-.||+.+.+........+    ....+.+++++.   +|+..+..|.|.+.-..|++.+.+++ -.+.|..+.
T Consensus       276 s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~  351 (514)
T KOG2055|consen  276 SGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT  351 (514)
T ss_pred             cccceEEEEeeccccccccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence            9999999999998877654333322    245566777643   78888899999999999999988886 367789999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      |+.+++.+ +.++.+|.|.+||++...|++.+....                                            
T Consensus       352 fsSdsk~l-~~~~~~GeV~v~nl~~~~~~~rf~D~G--------------------------------------------  386 (514)
T KOG2055|consen  352 FSSDSKEL-LASGGTGEVYVWNLRQNSCLHRFVDDG--------------------------------------------  386 (514)
T ss_pred             EecCCcEE-EEEcCCceEEEEecCCcceEEEEeecC--------------------------------------------
Confidence            99999865 556678999999999887776542100                                            


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee--eeeeeEEeccCcceE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL--VNFETVRLQTSKPIQ  355 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~  355 (441)
                                             ..   .-+++|.|+++.|||+||.-|-|.|||..+.....  .+..++.-....+..
T Consensus       387 -----------------------~v---~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its  440 (514)
T KOG2055|consen  387 -----------------------SV---HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS  440 (514)
T ss_pred             -----------------------cc---ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence                                   00   13578899999999999999999999976532111  111111112234456


Q ss_pred             EEeeCCCcEEEEeCC---CceEEEEccCCceEeeeccc---ccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          356 LATTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGH---YEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~---~~~~~wd~~~~~~~~~l~gh---~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      +.|++|..+++.++.   .++|+..+-+......+..-   -+.|+||+|||.|.+||-|-++|.+.+|.+.
T Consensus       441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            788899888776644   47888887665555544432   3459999999999999999999999999763

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5.2e-20  Score=160.09  Aligned_cols=275  Identities=16%  Similarity=0.152  Sum_probs=199.7

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+....|.++.|+|. ...|+.+|.||++++||+.....                  .....|..++.+++|.+  ...+
T Consensus        10 npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l------------------~~~~~~~~plL~c~F~d--~~~~   68 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSL------------------KLKFKHGAPLLDCAFAD--ESTI   68 (323)
T ss_pred             CCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhh------------------hhheecCCceeeeeccC--CceE
Confidence            466789999999965 45677778999999999875421                  11235888999999875  5579


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs  199 (441)
                      ++|+.|+.||.+|+.++....--.+.+.+.++...+.   ...+++|+.|+.|++||........++. ....|.++..+
T Consensus        69 ~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~---~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~  144 (323)
T KOG1036|consen   69 VTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYE---VGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS  144 (323)
T ss_pred             EEeccCceEEEEEecCCcceeeccCCCceEEEEeecc---CCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc
Confidence            9999999999999999887666667777888887753   3478899999999999998754444443 34478888876


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      .+   .|+.|..|..|.+||+|+.......                                                  
T Consensus       145 g~---~LvVg~~~r~v~iyDLRn~~~~~q~--------------------------------------------------  171 (323)
T KOG1036|consen  145 GN---RLVVGTSDRKVLIYDLRNLDEPFQR--------------------------------------------------  171 (323)
T ss_pred             CC---EEEEeecCceEEEEEcccccchhhh--------------------------------------------------
Confidence            43   4677888999999999863211000                                                  


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce---eeeeeeEEecc------
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT---LVNFETVRLQT------  350 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~---~~~~~~~~~~~------  350 (441)
                                         +...-.-.+++|++-|++.-.+.+|-||+|.+=.+......   .-.|...+...      
T Consensus       172 -------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  172 -------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             -------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence                               00000123789999999888999999999887555443110   01122222211      


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                      -+...++++|-...+++++. +-|.+||+.+.+.+..|..-+..|..++|+.||..||.|+.
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            12345777887666777655 67899999999999999888888999999999999998764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.9e-20  Score=155.87  Aligned_cols=220  Identities=23%  Similarity=0.352  Sum_probs=159.4

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcc------cC---CCCcee---------ccc-----------ee
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD------YE---GGGHIA---------KHR-----------SV   91 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~------~~---~~~~~~---------~~~-----------~~   91 (441)
                      -|.+.|+|.+|+| .|++|+|||+|++|++-.....+.      ++   ..+.+.         +..           .+
T Consensus        87 hhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   87 HHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             ccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            4789999999997 578999999999999875432211      10   000000         000           11


Q ss_pred             EEeec------ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec---C-----CeeEEEeeccCC
Q 013545           92 FVVDK------QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---P-----GKVYRTAMSPLA  157 (441)
Q Consensus        92 ~~~~~------~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~---~-----~~~~~~~~~~~~  157 (441)
                      +..+-      +...||++-|.++-..  ++-+|+|||.|.+||+||++-..++.+...   .     ..+..++..|  
T Consensus       166 y~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp--  241 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP--  241 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC--
Confidence            11111      1234899888766443  477999999999999999988777765532   1     2345555555  


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcccc
Q 013545          158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG  237 (441)
Q Consensus       158 ~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~  237 (441)
                       +..+|++|..|....+||+..+..++.+..|...|.||.|+|.-. .|++||-|..|++=|+...-             
T Consensus       242 -sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdl-------------  306 (350)
T KOG0641|consen  242 -SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDL-------------  306 (350)
T ss_pred             -CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccch-------------
Confidence             456999999999999999999999999999999999999999865 57899999999999985210             


Q ss_pred             CCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC
Q 013545          238 RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM  317 (441)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  317 (441)
                                                                      ...+      .......|.+.+..+.|+|..-
T Consensus       307 ------------------------------------------------a~el------~~~vv~ehkdk~i~~rwh~~d~  332 (350)
T KOG0641|consen  307 ------------------------------------------------AHEL------PIMVVAEHKDKAIQCRWHPQDF  332 (350)
T ss_pred             ------------------------------------------------hhcC------ceEEEEeccCceEEEEecCccc
Confidence                                                            0000      0001235778888999999999


Q ss_pred             EEEEeecCCcEEEeeCC
Q 013545          318 YLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       318 ~l~sgs~D~~i~~wd~~  334 (441)
                      .+++.++|+++.+|-+.
T Consensus       333 sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  333 SFISSSADKTATLWALN  349 (350)
T ss_pred             eeeeccCcceEEEeccC
Confidence            99999999999999653

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=1.2e-21  Score=170.01  Aligned_cols=215  Identities=24%  Similarity=0.426  Sum_probs=163.0

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC------------------eEEEE-EecCCeeEEEeeccCCCCc
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT------------------RVVMN-FKMPGKVYRTAMSPLAASH  160 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~------------------~~~~~-~~~~~~~~~~~~~~~~~~~  160 (441)
                      ..|+.++.+..|++ ||.++||||.|..|||.|++..                  -++++ +.+...+..+.|+|.   .
T Consensus       109 t~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr---e  184 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR---E  184 (430)
T ss_pred             eecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch---h
Confidence            36999998888887 8999999999999999998610                  11222 223456777888874   4


Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeee--cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccC
Q 013545          161 MLIAAGTEDVQVRLCDIASGAISQTL--SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR  238 (441)
Q Consensus       161 ~~las~s~d~~I~vwdl~~~~~~~~l--~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~  238 (441)
                      .+|+||+.|++|++||.......+.+  -....+|.+++|+|.|+. |+.|..-.++|+||+.+..|+-...        
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~Qcfvsan--------  255 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSAN--------  255 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecC--------
Confidence            68999999999999999654322222  234678999999999995 5667777899999999876653211        


Q ss_pred             CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE
Q 013545          239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY  318 (441)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  318 (441)
                                                                                  ....|.+.|++|.+++.|+.
T Consensus       256 ------------------------------------------------------------Pd~qht~ai~~V~Ys~t~~l  275 (430)
T KOG0640|consen  256 ------------------------------------------------------------PDDQHTGAITQVRYSSTGSL  275 (430)
T ss_pred             ------------------------------------------------------------cccccccceeEEEecCCccE
Confidence                                                                        11357889999999999999


Q ss_pred             EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc-cceEEE
Q 013545          319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCC  397 (441)
Q Consensus       319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~-~~v~~v  397 (441)
                      .++||.||-|++||--+++...    ++.                                        .+|. ..|.+.
T Consensus       276 YvTaSkDG~IklwDGVS~rCv~----t~~----------------------------------------~AH~gsevcSa  311 (430)
T KOG0640|consen  276 YVTASKDGAIKLWDGVSNRCVR----TIG----------------------------------------NAHGGSEVCSA  311 (430)
T ss_pred             EEEeccCCcEEeeccccHHHHH----HHH----------------------------------------hhcCCceeeeE
Confidence            9999999999999966544210    000                                        2343 358899


Q ss_pred             EEcCCCCeEEEeecCCcEEEeCCCCCC--CCCccCC
Q 013545          398 CFSSQDQELYTGGNDRQILVWCPSRHI--SDGVDAG  431 (441)
Q Consensus       398 ~fspd~~~l~s~s~D~~i~vW~~~~~~--~~~~~~~  431 (441)
                      .|+.+|++++|.|.|.++++|-+.+++  ..++.+|
T Consensus       312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg  347 (430)
T KOG0640|consen  312 VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG  347 (430)
T ss_pred             EEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence            999999999999999999999999988  4455554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=1.5e-19  Score=166.45  Aligned_cols=330  Identities=15%  Similarity=0.211  Sum_probs=218.1

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEe---eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSG---ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~---s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      +..-...|+|++|++.++.-++..   |++-.+.+||-+.+...   +.+.              .....|..+.|+|.+
T Consensus       150 ~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~---~~vk--------------~sne~v~~a~FHPtd  212 (626)
T KOG2106|consen  150 IGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL---GPVK--------------TSNEVVFLATFHPTD  212 (626)
T ss_pred             eccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc---Ccce--------------eccceEEEEEeccCC
Confidence            334567899999998766444443   44455889997765432   1111              122356678899988


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEec-----CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-----PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                      .++++++|. +-+-+|+.+.+.....-..     ...+.+++|.+.++    +++|.++|.|.||+..+.+..+....|.
T Consensus       213 ~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~aH~  287 (626)
T KOG2106|consen  213 PNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVHAHD  287 (626)
T ss_pred             CcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEeeecC
Confidence            888888876 5789999988776543221     13477777777653    6789999999999998887777767999


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      +.|.++..-.+|.  |+||+.|..|-.|| ...+..+..|-  +.. ..++....                    .....
T Consensus       288 ggv~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~el--Pe~-~G~iRtv~--------------------e~~~d  341 (626)
T KOG2106|consen  288 GGVFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETEL--PEQ-FGPIRTVA--------------------EGKGD  341 (626)
T ss_pred             CceEEEEEecCcc--EeecCccceEEecc-ccccccccccC--chh-cCCeeEEe--------------------cCCCc
Confidence            9999999999985  57899999999999 22221111110  000 00000000                    00000


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                      +.+....+....+.+...+       .....+|......++.+|....++|++.|+.+++|+  ..+...     -+...
T Consensus       342 i~vGTtrN~iL~Gt~~~~f-------~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w-----t~~~~  407 (626)
T KOG2106|consen  342 ILVGTTRNFILQGTLENGF-------TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW-----TKIIE  407 (626)
T ss_pred             EEEeeccceEEEeeecCCc-------eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE-----EEEec
Confidence            1111111111111111111       012357888999999999999999999999999999  222211     12223


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      ....++.+.|.+ .++++.. +..-+.|.++..++..... ..++++|+|+|||.+||.|+.|+.|.|+.++.+......
T Consensus       408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r  485 (626)
T KOG2106|consen  408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR  485 (626)
T ss_pred             CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence            455677888888 5555433 5677888888666555444 889999999999999999999999999999987776666


Q ss_pred             CCc
Q 013545          430 AGP  432 (441)
Q Consensus       430 ~~~  432 (441)
                      .|+
T Consensus       486 ~~k  488 (626)
T KOG2106|consen  486 VGK  488 (626)
T ss_pred             eee
Confidence            654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1e-20  Score=164.75  Aligned_cols=250  Identities=18%  Similarity=0.278  Sum_probs=193.4

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      +.||+++|+.++.-. ..+++.|+|.|.+.+||.++++.|+.++.. .|.+.++.|++   +..++++++.|++.+||..
T Consensus       144 ~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN---SGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             hcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEecc---ccceEEEccCCcchHHHHH
Confidence            459999999998865 456899999999999999999999988874 57899999988   4568999999999999962


Q ss_pred             ------C------------------------------CC----ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEE
Q 013545          178 ------A------------------------------SG----AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF  217 (441)
Q Consensus       178 ------~------------------------------~~----~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~i  217 (441)
                            .                              ++    .++..|.||.+.|.+..|...++. ++++|+|.+..+
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAnl  298 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTANL  298 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeecccccee
Confidence                  1                              01    134568899999999999988874 799999999999


Q ss_pred             EEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccc
Q 013545          218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQ  297 (441)
Q Consensus       218 WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (441)
                      ||++++..+..                                                                     
T Consensus       299 wDVEtge~v~~---------------------------------------------------------------------  309 (481)
T KOG0300|consen  299 WDVETGEVVNI---------------------------------------------------------------------  309 (481)
T ss_pred             eeeccCceecc---------------------------------------------------------------------
Confidence            99987643321                                                                     


Q ss_pred             ccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEE
Q 013545          298 DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAF  376 (441)
Q Consensus       298 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w  376 (441)
                        +.+|....+-++-+|..+++++.|.|.+.|+||+...-..   ...+..+.+......|..+.. +++++. .++|+|
T Consensus       310 --LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s---V~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvW  383 (481)
T KOG0300|consen  310 --LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS---VAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVW  383 (481)
T ss_pred             --ccCcchhccccccCCcceEEEEeccCceeEeccchhhcce---eeeecccccceeEEEEecCCc-eeecCCCceEEEe
Confidence              3567788888899999999999999999999999843211   122233344444555555544 444444 689999


Q ss_pred             EccC-CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          377 DIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       377 d~~~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      |+.+ ...+.+++ -..+++.++.+..+..|+---.++.||++|++..++-++-
T Consensus       384 dLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP  436 (481)
T KOG0300|consen  384 DLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP  436 (481)
T ss_pred             eeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence            9966 44566766 3567999999987777877777789999999988866543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.7e-20  Score=166.36  Aligned_cols=339  Identities=18%  Similarity=0.231  Sum_probs=210.0

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      -+.+|.+.|++|.|+ .++++|+||+.|..+++|++...-..      ...++|-+.    ...|...|.|+.|.. ...
T Consensus        51 D~~~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~------k~~KPI~~~----~~~H~SNIF~L~F~~-~N~  118 (609)
T KOG4227|consen   51 DVREHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVR------KTPKPIGVM----EHPHRSNIFSLEFDL-ENR  118 (609)
T ss_pred             hhhhhccccceeeec-cCCeEEeecCCcceeeeechHHHHhh------cCCCCceec----cCccccceEEEEEcc-CCe
Confidence            356899999999998 57899999999999999998633210      111233222    235778899999976 456


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-ee--eeecCCCC
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-IS--QTLSGHRD  191 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~--~~l~~h~~  191 (441)
                      .+.||+.+++|.+.|+++.+.+-.+...   |.++-+..+|.   .++|++.+.++-|.+||..... .+  ..+.....
T Consensus       119 ~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~  195 (609)
T KOG4227|consen  119 FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK  195 (609)
T ss_pred             eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC---CceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence            8899999999999999998887777654   46887777775   4578899999999999997654 22  22344566


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      ...++.|+|..+.+|++.+.-+-+.+||+|.+..- ++              ..... .+................|+++
T Consensus       196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~-~~--------------~~~~~-~~L~~~~~~~M~~~~~~~G~Q~  259 (609)
T KOG4227|consen  196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARP-VY--------------QRSMF-KGLPQENTEWMGSLWSPSGNQF  259 (609)
T ss_pred             cceeeeecCCCceeEEeccccCCCCceeeccccch-HH--------------hhhcc-ccCcccchhhhheeeCCCCCee
Confidence            77899999998889999999999999999864210 00              00000 0000000000011112233332


Q ss_pred             cccCcccccCCCCcccccCCCccccccc--ceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe-
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDR--ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL-  348 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~-  348 (441)
                      ....-+.-+...++..+-- ..++....  .......+.+++|-.|- .|+||+.+-.|++|-+...... -.|..+.- 
T Consensus       260 msiRR~~~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds-~G~~~IG~~  336 (609)
T KOG4227|consen  260 MSIRRGKCPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDS-YGFTQIGHD  336 (609)
T ss_pred             hhhhccCCCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccc-cCccccCcc
Confidence            2222222111111111000 00000000  11223457788887665 4999999999999987643210 00000000 


Q ss_pred             ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545          349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                      ....+.         .++             -.+.+.+|+||...++.|.|+|...+|+|.|-.+.++||.+.  ++-+-
T Consensus       337 ~~~~~~---------~~~-------------i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~--r~P~~  392 (609)
T KOG4227|consen  337 EEEMPS---------EIF-------------IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH--RLPWS  392 (609)
T ss_pred             hhhCch---------hhe-------------ecceeEEEecccccccceeecCCcceEeccchhhheeccccc--cCCcc
Confidence            000000         001             125677899999999999999999999999999999999874  33344


Q ss_pred             cCCccC
Q 013545          429 DAGPMQ  434 (441)
Q Consensus       429 ~~~~~~  434 (441)
                      ..||..
T Consensus       393 ~D~~~E  398 (609)
T KOG4227|consen  393 YDLPFE  398 (609)
T ss_pred             cCCccc
Confidence            555543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=7.5e-19  Score=164.36  Aligned_cols=268  Identities=13%  Similarity=0.146  Sum_probs=179.7

Q ss_pred             ecCCCCceeEEEccCCCCcEE-EEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           39 VSPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      +.+| ..+.+++|+|+ ++.+ ++++.|+.|++||+.+++...            ..     ..+. .+..+.+++ +++
T Consensus        27 ~~~~-~~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~------------~~-----~~~~-~~~~~~~~~-~g~   85 (300)
T TIGR03866        27 FPVG-QRPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIG------------TL-----PSGP-DPELFALHP-NGK   85 (300)
T ss_pred             EECC-CCCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEE------------ec-----cCCC-CccEEEECC-CCC
Confidence            3344 34678999975 5554 788899999999987654210            00     0111 234566666 566


Q ss_pred             EE-EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-cEEEEECCCCceeeeecCCCCCeEE
Q 013545          118 LF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-QVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       118 ~l-~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      .+ ++++.|++|++||+.+.+.+..+........+.+++++   .+++++..++ .+.+||.++++....+.. ...+.+
T Consensus        86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg---~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~  161 (300)
T TIGR03866        86 ILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG---KIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRF  161 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCC---CEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccE
Confidence            55 55667899999999988877777654445667777754   3566666554 577889998876654432 234578


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +.|+|+++.+++++..++.|++||++++++...+......                                        
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~----------------------------------------  201 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG----------------------------------------  201 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc----------------------------------------
Confidence            9999999876667777999999999876554433110000                                        


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                                   .          ... ......++|+|+++++. +.+.++++.+||+.+++...    . ......+.
T Consensus       202 -------------~----------~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~----~-~~~~~~~~  252 (300)
T TIGR03866       202 -------------V----------HPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD----Y-LLVGQRVW  252 (300)
T ss_pred             -------------c----------ccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE----E-EEeCCCcc
Confidence                         0          000 01134578999999854 44567789999998765321    1 11233566


Q ss_pred             EEEeeCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          355 QLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      .+++++++..+++++  .+.+++||+.+++.+.++..+ +..+.++|+|
T Consensus       253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            788999999888764  468999999999999998866 4459999886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5.4e-20  Score=160.28  Aligned_cols=282  Identities=17%  Similarity=0.248  Sum_probs=207.6

Q ss_pred             eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC
Q 013545           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D  125 (441)
                      -+|+.|++ .|.+||.|+.||.|.|||..+...                 ...+.+|..+|.+++|++ ||..|+|+|.|
T Consensus        26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~WS~-dgr~LltsS~D   86 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCWSR-DGRKLLTSSRD   86 (405)
T ss_pred             cceEEecc-CcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEecC-CCCEeeeecCC
Confidence            78999996 688999999999999999876531                 233458999999999998 78999999999


Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec----CC-CCCeEEEEEec
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS----GH-RDGIMTVEWST  200 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~----~h-~~~v~~v~fsp  200 (441)
                      ..|++||+..|.++..+.++.++....++|... + .+++.-.+..-.+-++..++- ..|.    +. .....+..|.+
T Consensus        87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~-n-~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR-N-KCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             ceeEEEeccCCCceeEEEccCccceeeeccccC-C-eEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC
Confidence            999999999999999999999999999998653 2 333334444455555544321 1111    11 11123446889


Q ss_pred             CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  280 (441)
Q Consensus       201 ~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (441)
                      .|++ +++|..-|.+-++|..+.+|...+....                                               
T Consensus       164 ~g~y-IitGtsKGkllv~~a~t~e~vas~rits-----------------------------------------------  195 (405)
T KOG1273|consen  164 RGKY-IITGTSKGKLLVYDAETLECVASFRITS-----------------------------------------------  195 (405)
T ss_pred             CCCE-EEEecCcceEEEEecchheeeeeeeech-----------------------------------------------
Confidence            8986 5799999999999998877665442100                                               


Q ss_pred             CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC----CCceeee--eeeEEe-ccCcc
Q 013545          281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES----GRNTLVN--FETVRL-QTSKP  353 (441)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~----~~~~~~~--~~~~~~-~~~~~  353 (441)
                                             ...|..+-|+..|..|+..+.|+.||.|+++.    ++.....  .+...+ ..-.-
T Consensus       196 -----------------------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  196 -----------------------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             -----------------------heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence                                   12477888999999999999999999999872    1110000  000000 00112


Q ss_pred             eEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          354 IQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ..+.++.+|.+++.++.  -++.+|.-..|.+++.|.|-+ ....+|.|.|---.++|- +.|+|.+|...
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence            35678889998877665  478999999999999999998 568899999988888887 68899999764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=8.3e-22  Score=188.35  Aligned_cols=238  Identities=21%  Similarity=0.398  Sum_probs=188.6

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      ...|...|.++.. ...++.+++|+.|-.+-+|.+.....            +.     .+++|..+|.++.+.. +..+
T Consensus        24 ~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~------------i~-----S~~~hespIeSl~f~~-~E~L   84 (825)
T KOG0267|consen   24 FVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNA------------IT-----SLTGHESPIESLTFDT-SERL   84 (825)
T ss_pred             hhhhhhhhceeee-eccceeeccCCCceeeccccccCCch------------hh-----eeeccCCcceeeecCc-chhh
Confidence            4579999999998 45688999999999999998764321            11     1468999999999976 4568


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      |++|+.||+||+||++.++.++++.+ ...+.++.|+|...   +.|+|+.|..+++||++...+...+.+|...|.+++
T Consensus        85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence            99999999999999998887765543 23456777888653   679999999999999998788899999999999999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      |+|+|+| +++++.|.+++|||.+.++....                                                 
T Consensus       162 lsP~Gr~-v~~g~ed~tvki~d~~agk~~~e-------------------------------------------------  191 (825)
T KOG0267|consen  162 LSPDGRW-VASGGEDNTVKIWDLTAGKLSKE-------------------------------------------------  191 (825)
T ss_pred             ecCCCce-eeccCCcceeeeecccccccccc-------------------------------------------------
Confidence            9999986 68999999999999876532211                                                 


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                            +..|.+.+.++.|+|..-++++||.|+++++||+++-.    .+.........+....
T Consensus       192 ----------------------f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe----~I~s~~~~~~~v~~~~  245 (825)
T KOG0267|consen  192 ----------------------FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE----VISSGKPETDGVRSLA  245 (825)
T ss_pred             ----------------------cccccccccccccCchhhhhccCCCCceeeeeccceeE----EeeccCCccCCceeee
Confidence                                  24578889999999999999999999999999998522    1112222245667788


Q ss_pred             eeCCCcEEEEeCCCceE
Q 013545          358 TTQDPAVVFVPCMTAVK  374 (441)
Q Consensus       358 ~~~~~~~~~~~~~~~~~  374 (441)
                      +.++++.+..+....++
T Consensus       246 fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  246 FNPDGKIVLSGEQISLS  262 (825)
T ss_pred             ecCCceeeecCchhhhh
Confidence            99999888877655444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=9.4e-21  Score=168.61  Aligned_cols=172  Identities=22%  Similarity=0.445  Sum_probs=142.4

Q ss_pred             cceeee--cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545           34 NYKEIV--SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (441)
Q Consensus        34 ~~~~~~--~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  111 (441)
                      ++++++  .+|.++=+.|+|||.....|+||.--+.|++|...++.              +.++...+.+|+..|-.+.|
T Consensus       200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~--------------W~vd~~Pf~gH~~SVEDLqW  265 (440)
T KOG0302|consen  200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS--------------WKVDQRPFTGHTKSVEDLQW  265 (440)
T ss_pred             ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc--------------eeecCccccccccchhhhcc
Confidence            345554  58999999999998544458999999999999887643              33445556689999999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCC---eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC---Cceeee
Q 013545          112 YPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---GAISQT  185 (441)
Q Consensus       112 ~~~~~~~l~sgs~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~---~~~~~~  185 (441)
                      +|....+|||||-|++|||||++.+   .++.+-.+++.++.+.|....   .+||+|+.||.++||||+.   ++++..
T Consensus       266 SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~---~lLasG~DdGt~~iwDLR~~~~~~pVA~  342 (440)
T KOG0302|consen  266 SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE---PLLASGGDDGTLSIWDLRQFKSGQPVAT  342 (440)
T ss_pred             CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc---ceeeecCCCceEEEEEhhhccCCCccee
Confidence            9988899999999999999999987   455554566777777776543   3899999999999999965   567789


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      ++-|..+|++|.|+|....+|+++|.|..|.|||+..
T Consensus       343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            9999999999999998877889999999999999863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.5e-20  Score=170.60  Aligned_cols=164  Identities=23%  Similarity=0.341  Sum_probs=140.6

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      ..+|+.+|-+|.++......|||||.|.||++||+.++...                 +....|.+.|.++.|+|....+
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~-----------------~s~~~~~k~Vq~l~wh~~~p~~  301 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK-----------------SSITHHGKKVQTLEWHPYEPSV  301 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc-----------------eehhhcCCceeEEEecCCCceE
Confidence            34799999999998766678999999999999999987642                 1122588899999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCe-EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTR-VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV  196 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v  196 (441)
                      |++||.|++|++.|++... .-..++..+.+-.+.+.+...  ..+.+++.||.++-+|++.. +++.+++.|.++|.++
T Consensus       302 LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl  379 (463)
T KOG0270|consen  302 LLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGL  379 (463)
T ss_pred             EEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc--eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceE
Confidence            9999999999999998533 234567778888899988754  46778899999999999875 8999999999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcC
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      .+++.-+.+++|+|.|++|++|++.
T Consensus       380 ~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  380 SVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             EecCCCCcceeeccccceEEEEeec
Confidence            9999988899999999999999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=9.3e-19  Score=166.68  Aligned_cols=283  Identities=18%  Similarity=0.338  Sum_probs=205.8

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~s  121 (441)
                      ..+|.+|+|+- ..+.||.+-.||.|.|||+..+-..+         .       ..+||+ ..|..++|.  ++.+|+|
T Consensus        25 Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~---------~-------vi~g~~drsIE~L~W~--e~~RLFS   85 (691)
T KOG2048|consen   25 PSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLE---------P-------VIHGPEDRSIESLAWA--EGGRLFS   85 (691)
T ss_pred             ccceEEEEEec-cCCceeeeccCCcEEEEccCCCceee---------E-------EEecCCCCceeeEEEc--cCCeEEe
Confidence            47899999995 56679999999999999997543211         1       122333 457788887  4679999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee--eeecCCCCCeEEEEE
Q 013545          122 GSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS--QTLSGHRDGIMTVEW  198 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~--~~l~~h~~~v~~v~f  198 (441)
                      .+.+|+|.-||+.+.+.+..+.. .+.+.+++.+|-.   ..++.|+.||.+..++...++..  ..|.-.++.|.+++|
T Consensus        86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~---~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw  162 (691)
T KOG2048|consen   86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN---TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW  162 (691)
T ss_pred             ecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc---ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence            99999999999999998877765 4567888888743   57899999998888888887654  345567899999999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  278 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (441)
                      +|++.. +++|+.||.|++||..++..+..........                                          
T Consensus       163 ~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l------------------------------------------  199 (691)
T KOG2048|consen  163 NPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRL------------------------------------------  199 (691)
T ss_pred             cCCccE-EEecccCceEEEEEcCCCceEEEeeeccccc------------------------------------------
Confidence            999874 6899999999999998764332111100000                                          


Q ss_pred             ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545          279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (441)
                                           ......-|.+|.|-.|+ .||+|..-|+|++||...+...    .....+.....+++.
T Consensus       200 ---------------------~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi----qS~~~h~adVl~Lav  253 (691)
T KOG2048|consen  200 ---------------------SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI----QSHSCHDADVLALAV  253 (691)
T ss_pred             ---------------------ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh----hhhhhhhcceeEEEE
Confidence                                 00112348888888665 7889999999999999876532    122334455677888


Q ss_pred             eCCCcEEEEeCC-CceEEEEccCCc----eEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          359 TQDPAVVFVPCM-TAVKAFDIWSGK----TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       359 ~~~~~~~~~~~~-~~~~~wd~~~~~----~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                      .++...+++++. ..+-.+...+++    ......+|...|.+++..++  .|++||.|.++-+=
T Consensus       254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC  316 (691)
T ss_pred             cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence            888788887765 455555544332    23445678888999999987  88999999887553

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.6e-20  Score=160.38  Aligned_cols=219  Identities=18%  Similarity=0.312  Sum_probs=156.6

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      .++||+++|++++|++ ||+.|||++.|++||+||+++...      ..+                      ..++    
T Consensus        81 ~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~------~eH----------------------r~~R----  127 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFEN------KEH----------------------RCIR----  127 (420)
T ss_pred             hhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhh------hhh----------------------hHhh----
Confidence            4579999999999987 899999999999999999875221      000                      0000    


Q ss_pred             CCCceeeee-cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          178 ASGAISQTL-SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       178 ~~~~~~~~l-~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                            ..+ -+|   .+.|.|.||.+.+++++....++++|-+...+.           ++.+....            
T Consensus       128 ------~nve~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-----------G~~~~~~v------------  175 (420)
T KOG2096|consen  128 ------QNVEYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-----------GSGSHHFV------------  175 (420)
T ss_pred             ------ccccCCC---ceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----------CCCCcccc------------
Confidence                  011 123   478999999888888888888999997643210           00000000            


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                 .++.         .-....|...+..+-...++.+|+|++.|..|.+|++. |
T Consensus       176 ---------------------------~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G  218 (420)
T KOG2096|consen  176 ---------------------------HIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G  218 (420)
T ss_pred             ---------------------------cccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C
Confidence                                       0000         00123466677788888899999999999999999998 5


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEc---cCCc-----eEeeecccccceEEEEEcCCCCeEE
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDI---WSGK-----TCLTFRGHYEYVNCCCFSSQDQELY  407 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~---~~~~-----~~~~l~gh~~~v~~v~fspd~~~l~  407 (441)
                      +.    +..+...+......+.+|+|..+++.+. -.|++|.+   ..|.     .+-.|.||...|..++|||+.+.++
T Consensus       219 q~----L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  219 QL----LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             ce----eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence            43    2333334445556789999999888776 47999986   2232     3447899999999999999999999


Q ss_pred             EeecCCcEEEeCCCC
Q 013545          408 TGGNDRQILVWCPSR  422 (441)
Q Consensus       408 s~s~D~~i~vW~~~~  422 (441)
                      |.|.||++||||.+-
T Consensus       295 tvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDV  309 (420)
T ss_pred             EEecCCcEEEeeccc
Confidence            999999999999863

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=3.3e-19  Score=167.35  Aligned_cols=285  Identities=16%  Similarity=0.280  Sum_probs=182.3

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ..++.||++.|.+|..+| .|.+|+|||.||++|||.+.++.+..            .+      .-.+.|.|++|.|..
T Consensus       393 ~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr------------~~------~~d~~I~~vaw~P~~  453 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVR------------TV------QFDSEIRSVAWNPLS  453 (733)
T ss_pred             eeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEE------------EE------eecceeEEEEecCCC
Confidence            346789999999999997 57899999999999999999887532            00      011245666665532


Q ss_pred             C-CEEEEEeCCCcEEEEECCCC------------------------------------e--EEEEEecCCeeEEEeeccC
Q 013545          116 T-GLFVTGSYDHYVKVWDTNCT------------------------------------R--VVMNFKMPGKVYRTAMSPL  156 (441)
Q Consensus       116 ~-~~l~sgs~D~~i~iWd~~~~------------------------------------~--~~~~~~~~~~~~~~~~~~~  156 (441)
                      . .+||.+ ....+.|-+..-|                                    +  +...+++...+.++.++..
T Consensus       454 ~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk  532 (733)
T KOG0650|consen  454 DLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK  532 (733)
T ss_pred             CceeEEEE-ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence            2 222222 2222333332211                                    0  1223444555666666664


Q ss_pred             CCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCC
Q 013545          157 AASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ  233 (441)
Q Consensus       157 ~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~  233 (441)
                      +   .+||+...   +..|.|++|.....+..|+--.+.|.++.|+|...++|++  .-..|||||+-.+..+..+    
T Consensus       533 G---DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa--Tq~~vRiYdL~kqelvKkL----  603 (733)
T KOG0650|consen  533 G---DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA--TQRSVRIYDLSKQELVKKL----  603 (733)
T ss_pred             C---ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE--eccceEEEehhHHHHHHHH----
Confidence            3   36666544   3478899998776666666667889999999998876654  3578999998643211100    


Q ss_pred             ccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc
Q 013545          234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT  313 (441)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  313 (441)
                                                                                         ......|.+++++
T Consensus       604 -------------------------------------------------------------------~tg~kwiS~msih  616 (733)
T KOG0650|consen  604 -------------------------------------------------------------------LTGSKWISSMSIH  616 (733)
T ss_pred             -------------------------------------------------------------------hcCCeeeeeeeec
Confidence                                                                               0112358889999


Q ss_pred             cCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEE------ccCC---ce
Q 013545          314 EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFD------IWSG---KT  383 (441)
Q Consensus       314 ~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd------~~~~---~~  383 (441)
                      |.|.-|+.|+.|+.+..+|+.-...   .+.+++.+......+++.+.--++.++.. +++.++.      +...   -.
T Consensus       617 p~GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP  693 (733)
T KOG0650|consen  617 PNGDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP  693 (733)
T ss_pred             CCCCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence            9999999999999999999875421   12222222222223333333333333332 3333332      1111   24


Q ss_pred             Eeeecccccc----eEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          384 CLTFRGHYEY----VNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       384 ~~~l~gh~~~----v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      ++.|+||...    |.++.|+|..-||+|+|+|++||+|.
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            5689999876    99999999999999999999999995

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=1.4e-20  Score=166.80  Aligned_cols=250  Identities=20%  Similarity=0.277  Sum_probs=183.7

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      +.||.++|.|++-+|..-..+|||+.||.|+|||+.+..++..+.. .|.+..+.+..     .-+.++++|.+|+.|-+
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-----~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-----TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-----cceEEecCCcceeeeec
Confidence            3699999999998885546799999999999999999888888875 46788777775     24667889999999998


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      +. .+++++.+ ...+..+.-+..+. .++|||.  .|-|||......++.+.                           
T Consensus       137 ~~-~p~~tilg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~Pv~sms---------------------------  184 (433)
T KOG0268|consen  137 DG-PPLHTILG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDNPVSSMS---------------------------  184 (433)
T ss_pred             cC-Ccceeeec-cccccccccccccc-cccccCc--eeeecccccCCccceee---------------------------
Confidence            65 46666654 34456666655444 5889886  59999986432221110                           


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~  336 (441)
                                                                  =-.+.|.++.|+|.-.. |++++.|+.|.+||+...
T Consensus       185 --------------------------------------------wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~  220 (433)
T KOG0268|consen  185 --------------------------------------------WGADSISSVKFNPVETSILASCASDRSIVLYDLRQA  220 (433)
T ss_pred             --------------------------------------------cCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence                                                        01245889999998765 566779999999999987


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccC-CceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      .+.....     ....+..++++|. ...|+++.  ..+..+|+.. ...+..+.+|...|.+|.|||-|+.++|||-|.
T Consensus       221 ~Pl~KVi-----~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  221 SPLKKVI-----LTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             Cccceee-----eeccccceecCcc-ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence            6532211     1234556788884 44555544  3677778755 346778999999999999999999999999999


Q ss_pred             cEEEeCCCCCCCCCc-cCCccCC
Q 013545          414 QILVWCPSRHISDGV-DAGPMQD  435 (441)
Q Consensus       414 ~i~vW~~~~~~~~~~-~~~~~~~  435 (441)
                      +|||+....+++-.+ --.+||.
T Consensus       295 sIRIf~~~~~~SRdiYhtkRMq~  317 (433)
T KOG0268|consen  295 SIRIFPVNHGHSRDIYHTKRMQH  317 (433)
T ss_pred             eEEEeecCCCcchhhhhHhhhhe
Confidence            999999988775433 2345553

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=2.7e-19  Score=170.96  Aligned_cols=291  Identities=21%  Similarity=0.247  Sum_probs=204.0

Q ss_pred             eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC----------C
Q 013545           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV----------D  115 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----------~  115 (441)
                      .-++.|++. ...|..--+|..+.|||+.......         .+..+     .-|...|+.+...|-          -
T Consensus       327 ~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvg---------k~~s~-----lyHS~ciW~Ve~~p~nv~~~~~aclp  391 (1080)
T KOG1408|consen  327 AIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVG---------KCSSM-----LYHSACIWDVENLPCNVHSPTAACLP  391 (1080)
T ss_pred             eeEEEecCC-CceEEEEEcCceEEEEecccccccc---------ceeee-----eeccceeeeeccccccccCcccccCC
Confidence            336778865 4579999999999999997654321         01100     124444554433320          0


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe---EEEE---------Ee------------------------cC--CeeEEEeeccCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTR---VVMN---------FK------------------------MP--GKVYRTAMSPLA  157 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~---~~~~---------~~------------------------~~--~~~~~~~~~~~~  157 (441)
                      ..-|.|||.|+|||+||+..+.   ..+.         +.                        +.  -.+.+++++|++
T Consensus       392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g  471 (1080)
T KOG1408|consen  392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG  471 (1080)
T ss_pred             ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence            1248999999999999987521   1100         00                        00  124567777754


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCcc
Q 013545          158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ  235 (441)
Q Consensus       158 ~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~  235 (441)
                         ..||+|.--|.++||+|..-++...+..|..+|.|+.|+..  +..+|||+|.|.-|.+||+...-           
T Consensus       472 ---qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-----------  537 (1080)
T KOG1408|consen  472 ---QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-----------  537 (1080)
T ss_pred             ---ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----------
Confidence               47999988899999999999888889999999999999864  23479999999999999986320           


Q ss_pred             ccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC
Q 013545          236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  315 (441)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  315 (441)
                                                                                 .....+-+|...|++|.|-.+
T Consensus       538 -----------------------------------------------------------~l~qtld~HSssITsvKFa~~  558 (1080)
T KOG1408|consen  538 -----------------------------------------------------------DLVQTLDGHSSSITSVKFACN  558 (1080)
T ss_pred             -----------------------------------------------------------chhhhhcccccceeEEEEeec
Confidence                                                                       001123468899999999988


Q ss_pred             C--CEEEEeecCCcEEEeeCCCC-CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeec---
Q 013545          316 G--MYLLSAGSDSRIRLWDVESG-RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFR---  388 (441)
Q Consensus       316 g--~~l~sgs~D~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~---  388 (441)
                      |  ..+++.++|+.|.+--..+. ...+..-++..........+++.|...+++++|. ..+++|++.+|+..+.|+   
T Consensus       559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~  638 (1080)
T KOG1408|consen  559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR  638 (1080)
T ss_pred             CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence            8  78999999998765433211 1111111111112222334667788888888887 589999999999998885   


Q ss_pred             ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          389 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       389 gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      +|++..--|...|.|-||||...|+++.++|..++.
T Consensus       639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             cCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence            567778889999999999999999999999988765

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=4.3e-20  Score=178.00  Aligned_cols=161  Identities=17%  Similarity=0.358  Sum_probs=128.6

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      .+..+.|.....++|||++..|.|-+||+...-.         .+.+     +.+..|+-.|.++.|++....+|+|||.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r---------nk~l-----~~f~EH~Rs~~~ldfh~tep~iliSGSQ  154 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR---------NKLL-----TVFNEHERSANKLDFHSTEPNILISGSQ  154 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc---------chhh-----hHhhhhccceeeeeeccCCccEEEecCC
Confidence            3444556544467899999999999999975210         0111     2345799999999999988899999999


Q ss_pred             CCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEecCC
Q 013545          125 DHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      |++||+||++...-..++.. ...++++.|+|..  ...++++...|.+++||++... +...+..|.++|.|+.|+|++
T Consensus       155 Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr  232 (839)
T KOG0269|consen  155 DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR  232 (839)
T ss_pred             CceEEEEeeecccccccccccchhhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC
Confidence            99999999987766555543 3458889999864  4689999999999999998764 456788999999999999987


Q ss_pred             CcEEEEeecCCcEEEEEcCC
Q 013545          203 EWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      . +|||||.|++|+|||+..
T Consensus       233 ~-~lATGGRDK~vkiWd~t~  251 (839)
T KOG0269|consen  233 E-WLATGGRDKMVKIWDMTD  251 (839)
T ss_pred             c-eeeecCCCccEEEEeccC
Confidence            6 589999999999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=6.3e-20  Score=168.78  Aligned_cols=242  Identities=19%  Similarity=0.272  Sum_probs=179.8

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC---eEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I~v  174 (441)
                      .|..-|.++.++. ...++.|||. +.|||||+...   .++.++.+   ...++++.+.+++.   .|++|+.-.++.|
T Consensus       417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsi  491 (705)
T KOG0639|consen  417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSI  491 (705)
T ss_pred             ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeee
Confidence            6777777777776 4568888865 78999998642   33444433   23466777777654   5677888889999


Q ss_pred             EECCCCce--eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          175 CDIASGAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       175 wdl~~~~~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      |||....+  ...+....-...+++.+||.+ +..+|..||-|+|||+++...++.                        
T Consensus       492 WDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~Vrq------------------------  546 (705)
T KOG0639|consen  492 WDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQ------------------------  546 (705)
T ss_pred             eeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeec------------------------
Confidence            99987643  233444444567899999988 566788899999999987543332                        


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  332 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd  332 (441)
                                                                     +.+|.+-+.+|++++||..|-||+.|.+||.||
T Consensus       547 -----------------------------------------------fqGhtDGascIdis~dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  547 -----------------------------------------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             -----------------------------------------------ccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence                                                           357888899999999999999999999999999


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                      ++.++....  +.   -.+.+..+-.+|.+..++++.. +.+.+... ++...+.+.-|+..|.++.|++-|+|++|.|.
T Consensus       580 lregrqlqq--hd---F~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGk  653 (705)
T KOG0639|consen  580 LREGRQLQQ--HD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK  653 (705)
T ss_pred             hhhhhhhhh--hh---hhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCc
Confidence            998764321  11   1234556677888888877754 45555544 44555677889999999999999999999999


Q ss_pred             CCcEEEeCCCCCCC
Q 013545          412 DRQILVWCPSRHIS  425 (441)
Q Consensus       412 D~~i~vW~~~~~~~  425 (441)
                      |..+-.|..+-+.+
T Consensus       654 DnlLnawrtPyGas  667 (705)
T KOG0639|consen  654 DNLLNAWRTPYGAS  667 (705)
T ss_pred             hhhhhhccCccccc
Confidence            99999998876554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.5e-19  Score=150.95  Aligned_cols=216  Identities=19%  Similarity=0.292  Sum_probs=157.1

Q ss_pred             eeeecCCCCceeEEEcc-CCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           36 KEIVSPHKGSINSLQVD-LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s-~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ...++||.++|+.++|. |.-|.+|||+|.||.|.||.-+.+. ...              ......|...|++++|-|.
T Consensus        49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-w~k--------------~~e~~~h~~SVNsV~waph  113 (299)
T KOG1332|consen   49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-WTK--------------AYEHAAHSASVNSVAWAPH  113 (299)
T ss_pred             eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-hhh--------------hhhhhhhcccceeeccccc
Confidence            34578999999999985 5568899999999999999977653 110              0112379999999999876


Q ss_pred             C-CCEEEEEeCCCcEEEEECCCC-e-EEEEE--ecCCeeEEEeeccCCCC-----------ccEEEEEeCCCcEEEEECC
Q 013545          115 D-TGLFVTGSYDHYVKVWDTNCT-R-VVMNF--KMPGKVYRTAMSPLAAS-----------HMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       115 ~-~~~l~sgs~D~~i~iWd~~~~-~-~~~~~--~~~~~~~~~~~~~~~~~-----------~~~las~s~d~~I~vwdl~  178 (441)
                      + |-.||+++.||+|.+.+.... . ....+  -+.-.+.++++.|-...           ...|++|+.|+.|+||+..
T Consensus       114 eygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  114 EYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             ccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence            5 567899999999999987643 1 11111  12233566666654211           2469999999999999998


Q ss_pred             CCce--eeeecCCCCCeEEEEEecCC---CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          179 SGAI--SQTLSGHRDGIMTVEWSTSS---EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       179 ~~~~--~~~l~~h~~~v~~v~fsp~~---~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      .+.-  -++|.+|.+.|+.++|.|.-   +..+||||+||++.||-.+..  ....                        
T Consensus       194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e--~e~w------------------------  247 (299)
T KOG1332|consen  194 SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE--YEPW------------------------  247 (299)
T ss_pred             CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc--cCcc------------------------
Confidence            8743  35689999999999999974   346899999999999975411  0000                        


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~  333 (441)
                                                      ..          ..+......+..+.||+.|..|+.++.|..|.+|--
T Consensus       248 --------------------------------k~----------tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  248 --------------------------------KK----------TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             --------------------------------cc----------cccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence                                            00          001123467899999999999999999999999954


Q ss_pred             C
Q 013545          334 E  334 (441)
Q Consensus       334 ~  334 (441)
                      .
T Consensus       286 ~  286 (299)
T KOG1332|consen  286 N  286 (299)
T ss_pred             C
Confidence            3

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-19  Score=165.91  Aligned_cols=197  Identities=18%  Similarity=0.259  Sum_probs=157.7

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      .|.++.++    .|+++|+..++|+|||++.-..                 .+..++|+..|+++.+... ..++|+++.
T Consensus        84 Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~kl~-----------------hr~lkdh~stvt~v~YN~~-DeyiAsvs~  141 (673)
T KOG4378|consen   84 CVACASQS----LYEISGGQSGCVKIWDLRAKLI-----------------HRFLKDHQSTVTYVDYNNT-DEYIASVSD  141 (673)
T ss_pred             HHhhhhcc----eeeeccCcCceeeehhhHHHHH-----------------hhhccCCcceeEEEEecCC-cceeEEecc
Confidence            44455444    6999999999999999972211                 1334689999999999764 569999999


Q ss_pred             CCcEEEEECCCCeEEEEEecC-Ce-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee-ecCCCCCeEEEEEecC
Q 013545          125 DHYVKVWDTNCTRVVMNFKMP-GK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTS  201 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~fsp~  201 (441)
                      -|-|.|..+.++.....+.++ +. +.-+.+++..  ..+|.+++.+|.|.+||+....++.. ...|..+...|.|+|.
T Consensus       142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk--r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps  219 (673)
T KOG4378|consen  142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK--RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS  219 (673)
T ss_pred             CCcEEEEecccCccccceecCCCCeEEEeeccccc--ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC
Confidence            999999999999888888875 44 3355667653  46899999999999999988776654 4579999999999999


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      ++.+|+|.+.|+.|.+||++..+....                                                     
T Consensus       220 ne~l~vsVG~Dkki~~yD~~s~~s~~~-----------------------------------------------------  246 (673)
T KOG4378|consen  220 NEALLVSVGYDKKINIYDIRSQASTDR-----------------------------------------------------  246 (673)
T ss_pred             ccceEEEecccceEEEeecccccccce-----------------------------------------------------
Confidence            999999999999999999985421111                                                     


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                         .....+..+|+|+++|.+|++|+..|.|..||++..+
T Consensus       247 -------------------l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  247 -------------------LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             -------------------eeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence                               1123467899999999999999999999999998655

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.83  E-value=2.6e-19  Score=169.27  Aligned_cols=293  Identities=19%  Similarity=0.264  Sum_probs=184.4

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      ..|..+|..+.+-| +...|++++.|.+|+.||++..+...               .....||.+.|.+++|.+.+...|
T Consensus        97 ~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G---------------~~~~~GH~~SvkS~cf~~~n~~vF  160 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG---------------GRLNLGHTGSVKSECFMPTNPAVF  160 (720)
T ss_pred             ccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeec---------------ceeecccccccchhhhccCCCcce
Confidence            36999999999987 56689999999999999998654310               112348999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeE--------------------E-------EEEec-CCeeEE-EeeccCCCCccEEEEEeC-C
Q 013545          120 VTGSYDHYVKVWDTNCTRV--------------------V-------MNFKM-PGKVYR-TAMSPLAASHMLIAAGTE-D  169 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~--------------------~-------~~~~~-~~~~~~-~~~~~~~~~~~~las~s~-d  169 (441)
                      ++|+.|+.|.|||++....                    .       ...+. .+.+.+ +.... ..++..||+++. |
T Consensus       161 ~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~-fkDe~tlaSaga~D  239 (720)
T KOG0321|consen  161 CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL-FKDESTLASAGAAD  239 (720)
T ss_pred             eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE-EeccceeeeccCCC
Confidence            9999999999999753220                    0       00000 011111 11111 123456777776 9


Q ss_pred             CcEEEEECCCCceeee--------ecCC---CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccC
Q 013545          170 VQVRLCDIASGAISQT--------LSGH---RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR  238 (441)
Q Consensus       170 ~~I~vwdl~~~~~~~~--------l~~h---~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~  238 (441)
                      +.|+||||........        +.-|   .-.+.++.....|.+++|+|. |++|.+||+++...-.+.         
T Consensus       240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~---------  309 (720)
T KOG0321|consen  240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVA---------  309 (720)
T ss_pred             cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchh---------
Confidence            9999999987643221        2223   234566766667788888876 999999999853210000         


Q ss_pred             CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE
Q 013545          239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY  318 (441)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  318 (441)
                                                             .+  .+...                 ..-...=..+||+.+
T Consensus       310 ---------------------------------------~~--sg~~~-----------------~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  310 ---------------------------------------EF--SGKLN-----------------SSFYVKSELSPDDCS  331 (720)
T ss_pred             ---------------------------------------hc--cCccc-----------------ceeeeeeecCCCCce
Confidence                                                   00  00000                 000112247899999


Q ss_pred             EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC--CCcEEEEeCCCceEEEEccCCce-------------
Q 013545          319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ--DPAVVFVPCMTAVKAFDIWSGKT-------------  383 (441)
Q Consensus       319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~wd~~~~~~-------------  383 (441)
                      +++|+.|...++|.+.+.......+   ..+.-....+.+.+  ....+...-+.++++|++.++-.             
T Consensus       332 l~SgSsd~~ayiw~vs~~e~~~~~l---~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~  408 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPEAPPALL---LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYE  408 (720)
T ss_pred             EeccCCCcceeeeeecCccCChhhh---hCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhh
Confidence            9999999999999998765322111   11111112233333  33333332336899999866421             


Q ss_pred             -EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          384 -CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       384 -~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                       ...|.+|...+..+.++..+.+....  -+..|+|.-+.
T Consensus       409 ~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP~  446 (720)
T KOG0321|consen  409 YSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSPV  446 (720)
T ss_pred             hhhhhhccccccccccccccccccchh--hhccccccCcc
Confidence             23567888888888887766555444  66678887664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=3.2e-19  Score=173.29  Aligned_cols=197  Identities=19%  Similarity=0.353  Sum_probs=160.7

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ..+++++.++ -|++.+-|+..|+|-+||.+.+-.-          ..    ......|+.+|..++... -+..++|++
T Consensus       449 ~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r----------~s----f~~~~ah~~~V~gla~D~-~n~~~vsa~  512 (910)
T KOG1539|consen  449 INATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHR----------KS----FGDSPAHKGEVTGLAVDG-TNRLLVSAG  512 (910)
T ss_pred             cceEEEEEec-cCceEEEeccCCeEEEEEcccCeee----------cc----cccCccccCceeEEEecC-CCceEEEcc
Confidence            7899999985 5889999999999999999876421          00    011247999999998865 356899999


Q ss_pred             CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~  203 (441)
                      .||-+++||.+....+.++.....+.....+..   ..++|.+..|..|+++|..|.+.++.|.||.+.|+..+|||+|+
T Consensus       513 ~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~---s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  513 ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV---SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             CcceEEEEecCCcceeeeeccCCCcceeeeeeh---hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            999999999998888877777665555554443   24788888999999999999999999999999999999999999


Q ss_pred             cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG  283 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (441)
                      | |++++.|++||+||+.++.++..+-                                                     
T Consensus       590 W-lisasmD~tIr~wDlpt~~lID~~~-----------------------------------------------------  615 (910)
T KOG1539|consen  590 W-LISASMDSTIRTWDLPTGTLIDGLL-----------------------------------------------------  615 (910)
T ss_pred             E-EEEeecCCcEEEEeccCcceeeeEe-----------------------------------------------------
Confidence            8 5899999999999998876543320                                                     


Q ss_pred             CcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC-CcEEEee
Q 013545          284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-SRIRLWD  332 (441)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-~~i~~wd  332 (441)
                                         -..+.++|.|||+|.+|||...| .-|++|.
T Consensus       616 -------------------vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  616 -------------------VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             -------------------cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence                               12457789999999999999888 5699995

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=148.64  Aligned_cols=299  Identities=16%  Similarity=0.231  Sum_probs=197.6

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeeccccc-CcccceeEEEEeeCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH-GHKYAISSAIWYPVDT  116 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~  116 (441)
                      +++||.+.|+++.|.. ++ +|.+|..-|-+.+|++++.....                 +.. .|+..|+.+...|  +
T Consensus         9 vLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~-----------------~~r~~g~~~it~lq~~p--~   67 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLP-----------------LIRLFGRLFITNLQSIP--N   67 (323)
T ss_pred             Eeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccch-----------------hhhhhccceeeceeecC--C
Confidence            4669999999999973 44 69999999999999998765321                 112 3555666666665  3


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccC-----CCCc-cEEEEEeCCC-cEEEEECCCCceeeee---
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL-----AASH-MLIAAGTEDV-QVRLCDIASGAISQTL---  186 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~las~s~d~-~I~vwdl~~~~~~~~l---  186 (441)
                      +.+.|-+.|.++.+|++.-...+......  +..+.|.++     .... .+++.-+... .+++-|......++..   
T Consensus        68 d~l~tqgRd~~L~lw~ia~s~~i~i~Si~--~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~  145 (323)
T KOG0322|consen   68 DSLDTQGRDPLLILWTIAYSAFISIHSIV--VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS  145 (323)
T ss_pred             cchhhcCCCceEEEEEccCcceEEEeeee--ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence            67999999999999999765544322211  222223222     1111 2222211110 1222222211111111   


Q ss_pred             -cCCCCCeEEEEEecC-C-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          187 -SGHRDGIMTVEWSTS-S-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       187 -~~h~~~v~~v~fsp~-~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                       .+-.+.++|..+.-. + ..+|+.|-++|.+-+||+.++..+-.+...                               
T Consensus       146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~-------------------------------  194 (323)
T KOG0322|consen  146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS-------------------------------  194 (323)
T ss_pred             hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccc-------------------------------
Confidence             234566777764322 2 346777889999999999875221111000                               


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~  343 (441)
                                         ..+           .-....|..+|++|.+.+--..=++|+.+..+..|++.........-
T Consensus       195 -------------------~kv-----------~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  195 -------------------SKV-----------ESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             -------------------ccc-----------ccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence                               000           00124688899999999877777889999999999987542222222


Q ss_pred             eeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          344 ETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ....+...+...+.+.+|++++++++. ..+|+|.-.+...+..|.-|.+.|++++|+||...+|+||.|+.|-+|++
T Consensus       245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            233444455566788999999999887 58999999999999999999999999999999999999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=1.3e-17  Score=146.43  Aligned_cols=168  Identities=20%  Similarity=0.380  Sum_probs=134.0

Q ss_pred             cccCcccceeEEEEeeC----CCCEEEEEeCCCcEEEEECCCCe---EEEEEe---cCCeeEEEeeccCCC-CccEEEEE
Q 013545           98 HEHGHKYAISSAIWYPV----DTGLFVTGSYDHYVKVWDTNCTR---VVMNFK---MPGKVYRTAMSPLAA-SHMLIAAG  166 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~----~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~---~~~~~~~~~~~~~~~-~~~~las~  166 (441)
                      ....|+.+|..+.|.+.    .-+.+||.|.+ ++.++.....-   .++.+.   .+...+.++++-+.. ++.++|+|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            34578888888887532    23466776664 78888764332   222222   234466777776655 47789999


Q ss_pred             eCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545          167 TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (441)
Q Consensus       167 s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (441)
                      +.-|.|+|.|+.++++...+.+|...|..+.|+|....+++|+|.|.+||+|++++..|+.++..               
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------  176 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------  176 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc---------------
Confidence            99999999999999999999999999999999999888899999999999999999988876621               


Q ss_pred             ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC
Q 013545          247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  326 (441)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~  326 (441)
                                                                           ..+|-+.|.+++|+++|.+|+|++-|-
T Consensus       177 -----------------------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDh  203 (385)
T KOG1034|consen  177 -----------------------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDH  203 (385)
T ss_pred             -----------------------------------------------------cccccCcEEEEEEcCCCCeeeccCCcc
Confidence                                                                 247889999999999999999999999


Q ss_pred             cEEEeeCC
Q 013545          327 RIRLWDVE  334 (441)
Q Consensus       327 ~i~~wd~~  334 (441)
                      +|++|++.
T Consensus       204 slk~W~l~  211 (385)
T KOG1034|consen  204 SLKLWRLN  211 (385)
T ss_pred             eEEEEecC
Confidence            99999987

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=3.7e-18  Score=147.20  Aligned_cols=289  Identities=20%  Similarity=0.297  Sum_probs=189.0

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCC-------CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeE
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASD-------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS  108 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  108 (441)
                      .+++.-|.++|+.|+-+|.+.+.|+|+-+|       -.+.||.+........   ..+...+...+    ..+-+.|.|
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~---~~tlE~v~~Ld----teavg~i~c  128 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN---SSTLECVASLD----TEAVGKINC  128 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc---cchhhHhhcCC----HHHhCceee
Confidence            445566889999999999888888887764       2367998864332100   00011111111    134457899


Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEec------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (441)
Q Consensus       109 ~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~  181 (441)
                      +.|.| +++.+|+-. |..|.+|++..... ......      .....+-.++|....+. +++ ..|+++..||++|-+
T Consensus       129 vew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq-v~t-t~d~tl~~~D~RT~~  204 (370)
T KOG1007|consen  129 VEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ-VAT-TSDSTLQFWDLRTMK  204 (370)
T ss_pred             EEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce-EEE-eCCCcEEEEEccchh
Confidence            99988 788888764 88999999976654 222221      12234556777655444 443 357899999999887


Q ss_pred             eeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          182 ISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       182 ~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                      ....+. .|...|..+.|+|+.+++|+||+.||.|||||+|+-+.                                   
T Consensus       205 ~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-----------------------------------  249 (370)
T KOG1007|consen  205 KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-----------------------------------  249 (370)
T ss_pred             hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----------------------------------
Confidence            665554 69999999999999999999999999999999985320                                   


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCce
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNT  339 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~  339 (441)
                                                         ....+.+|.-.|.+|.|.|- .++|+|||.|..|.+|...+-...
T Consensus       250 -----------------------------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE  294 (370)
T KOG1007|consen  250 -----------------------------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE  294 (370)
T ss_pred             -----------------------------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence                                               00113467888999999997 467889999999999987643211


Q ss_pred             e-eeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeE-EEeecCCcEEE
Q 013545          340 L-VNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILV  417 (441)
Q Consensus       340 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l-~s~s~D~~i~v  417 (441)
                      . ..+....  ....       +.     .....++   .--...+.++..|++.|.+++||.-.-++ ||-|-||-+.|
T Consensus       295 ~qi~~~~de--se~e-------~~-----dseer~k---pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  295 QQIEFEDDE--SESE-------DE-----DSEERVK---PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             ccccccccc--ccCc-------ch-----hhHHhcc---cccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence            1 0000000  0000       00     0000011   00112356788999999999999988885 57799998877


Q ss_pred             eCCCC
Q 013545          418 WCPSR  422 (441)
Q Consensus       418 W~~~~  422 (441)
                      =.++.
T Consensus       358 s~V~r  362 (370)
T KOG1007|consen  358 SSVPR  362 (370)
T ss_pred             ecCCh
Confidence            65543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2e-17  Score=157.66  Aligned_cols=246  Identities=15%  Similarity=0.179  Sum_probs=186.3

Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                      .+|.++++++. ...||.+=.|++|-||+++..=. ...+..  .+.+-.++|++    ...|.|.+.+|.|.-||+.++
T Consensus        26 s~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e----~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   26 SEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE----GGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             cceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc----CCeEEeecCCceEEEEecccC
Confidence            47889999885 55799999999999999976433 233332  34566777773    235777788999999999999


Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                      +.+..+....+.|++++.+|.+. .++.|+.||.+.+++...++....                                
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~--------------------------------  147 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYK--------------------------------  147 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEE--------------------------------
Confidence            99999999999999999999987 567888999777776654321100                                


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                                           ..+.-..+.|.+|+|+|++..|++|+.||.|++||..++....
T Consensus       148 -------------------------------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  148 -------------------------------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             -------------------------------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence                                                 0001123669999999999999999999999999999875321


Q ss_pred             eeeeeE---Eecc-Cc--ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545          341 VNFETV---RLQT-SK--PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       341 ~~~~~~---~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                        ..+.   ++.. ..  ...+.+-.++.++...+.++|+.||...+.+...++.|.+.|.|++.++++.+++++|.|+.
T Consensus       191 --~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~  268 (691)
T KOG2048|consen  191 --IITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK  268 (691)
T ss_pred             --EeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence              1111   1111 11  12344445666655556789999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCC
Q 013545          415 ILVWCPSRHISD  426 (441)
Q Consensus       415 i~vW~~~~~~~~  426 (441)
                      |..+...+++..
T Consensus       269 ii~~~~~~~~~~  280 (691)
T KOG2048|consen  269 IIQYSLTTNKSE  280 (691)
T ss_pred             eEEEEecCCccc
Confidence            999988877664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.1e-18  Score=150.96  Aligned_cols=275  Identities=18%  Similarity=0.249  Sum_probs=178.6

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-CCCEEEEEeCCCcEEEEECCC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLFVTGSYDHYVKVWDTNC  135 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~  135 (441)
                      ..+|++-..|+|+|||..++..++                 ..++|...++.+.|... ....+.||+.||+||+||++.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~-----------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs  103 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE-----------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS  103 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh-----------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec
Confidence            358888899999999988764432                 23466666666777554 356789999999999999987


Q ss_pred             CeEEEEEecCC----eeEEEeeccCCCCccEEEEEe----CCCcEEEEECCCCce-eee-ecCCCCCeEEEEEecCCCcE
Q 013545          136 TRVVMNFKMPG----KVYRTAMSPLAASHMLIAAGT----EDVQVRLCDIASGAI-SQT-LSGHRDGIMTVEWSTSSEWI  205 (441)
Q Consensus       136 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~las~s----~d~~I~vwdl~~~~~-~~~-l~~h~~~v~~v~fsp~~~~~  205 (441)
                      ......+....    +..++....   ...+++.|+    .+-.+.+||.+..+. +.. ...|.+.|++|.|+|+++.+
T Consensus       104 ~~e~a~~~~~~~~~~~f~~ld~nc---k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  104 QAESARISWTQQSGTPFICLDLNC---KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             chhhhheeccCCCCCcceEeeccC---cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence            66544443221    122222211   345677764    356799999987754 444 45799999999999999999


Q ss_pred             EEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCc
Q 013545          206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV  285 (441)
Q Consensus       206 l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (441)
                      |+|||.||-|.+||+....--.                                                        .+
T Consensus       181 LlSGSvDGLvnlfD~~~d~EeD--------------------------------------------------------aL  204 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKKDNEED--------------------------------------------------------AL  204 (376)
T ss_pred             EEeecccceEEeeecCCCcchh--------------------------------------------------------hH
Confidence            9999999999999987421000                                                        00


Q ss_pred             ccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEec-------cC--cceE
Q 013545          286 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ-------TS--KPIQ  355 (441)
Q Consensus       286 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~-------~~--~~~~  355 (441)
                      .            ....|...|..+.|+.++ +.|.+-+-.++..+|+++.+..... ++.....       ..  ..+.
T Consensus       205 ~------------~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~-~~~~~~~~~d~r~~~~~dY~I~  271 (376)
T KOG1188|consen  205 L------------HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW-LENPDVSADDLRKEDNCDYVIN  271 (376)
T ss_pred             H------------HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc-ccCccchhhhHHhhhhhhheee
Confidence            0            001244568889999876 5688889999999999987653211 1100000       00  0011


Q ss_pred             EEeeCCCcEEEEeC--CCceEEEEc---cC---CceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          356 LATTQDPAVVFVPC--MTAVKAFDI---WS---GKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       356 ~~~~~~~~~~~~~~--~~~~~~wd~---~~---~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      .....+.....+++  .+...++-+   .+   +.....|.| |..-|.++.|.-.+..+.|||+||.+++|..
T Consensus       272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            11111223333332  244555433   22   334455666 7788899999988999999999999999984

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=152.60  Aligned_cols=240  Identities=15%  Similarity=0.167  Sum_probs=179.4

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      .+.|.+|+-+| .|.||+.|.-.|.|.+|-+.+|..+.                 ...+|=..|+|+.|+. |+.+|+||
T Consensus        81 Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~-----------------v~~aHYQ~ITcL~fs~-dgs~iiTg  141 (476)
T KOG0646|consen   81 PGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLN-----------------VLSAHYQSITCLKFSD-DGSHIITG  141 (476)
T ss_pred             ccceeeeecCC-CceEEEeecccCcEEEEEeccccHHH-----------------HHHhhccceeEEEEeC-CCcEEEec
Confidence            37899999985 57788888799999999999886431                 1236777899999886 78999999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      |.|+.|++|++.                           -++++..|+        +.+++..+.+|+-.|+.+...+.+
T Consensus       142 skDg~V~vW~l~---------------------------~lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg  186 (476)
T KOG0646|consen  142 SKDGAVLVWLLT---------------------------DLVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGG  186 (476)
T ss_pred             CCCccEEEEEEE---------------------------eecccccCC--------CccceeeeccCcceeEEEEecCCC
Confidence            999999999752                           122233333        445677888999999988776542


Q ss_pred             -CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          203 -EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       203 -~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                       .-.++|+|.|.+||+||+..+..+-.+                                                    
T Consensus       187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti----------------------------------------------------  214 (476)
T KOG0646|consen  187 TNARLYTASEDRTIKLWDLSLGVLLLTI----------------------------------------------------  214 (476)
T ss_pred             ccceEEEecCCceEEEEEeccceeeEEE----------------------------------------------------
Confidence             225789999999999999876433221                                                    


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC--ce----------eeeeeeEEec
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR--NT----------LVNFETVRLQ  349 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~--~~----------~~~~~~~~~~  349 (441)
                                          ....++.+++.+|-.+.+..|+.+|.|.+.++.+..  ..          ...+.....+
T Consensus       215 --------------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh  274 (476)
T KOG0646|consen  215 --------------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH  274 (476)
T ss_pred             --------------------ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence                                113458899999999999999999999998876532  11          0111222223


Q ss_pred             cC--cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545          350 TS--KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT  408 (441)
Q Consensus       350 ~~--~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s  408 (441)
                      .+  .+.+++++.|+++++++.. +.+.+||+.+.++++++..-.++|+.+.+.|-.+....
T Consensus       275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceec
Confidence            33  5678999999999999865 78999999999999999888899999999775444443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.1e-18  Score=175.38  Aligned_cols=255  Identities=17%  Similarity=0.265  Sum_probs=185.3

Q ss_pred             CceeEEEccCCCCc---EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           44 GSINSLQVDLTEER---YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        44 ~~V~~l~~s~~~~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      ..-+.|+|.+.+.+   .||.|..||.|-+||......-.....+           .+..-|++.|..+.|.+..+++||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l-----------a~~~~h~G~V~gLDfN~~q~nlLA  133 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL-----------ATKSKHTGPVLGLDFNPFQGNLLA  133 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-----------hhhcccCCceeeeeccccCCceee
Confidence            46778888865433   5999999999999998643110000111           223469999999999998888999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEE---ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC--CeEE
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNF---KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD--GIMT  195 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~--~v~~  195 (441)
                      ||+.|+.|.|||++..+.-...   ...+.+..+++..  .-..+|||++.++.+.|||++..+.+-.+..|..  .+..
T Consensus       134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence            9999999999999764322221   1233455555543  2346899999999999999998887766665554  4678


Q ss_pred             EEEecCCCcEEEEeecCC---cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          196 VEWSTSSEWILVTGGCDG---AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg---~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      ++|+|+....++.++.|.   .|++||+|...                                                
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~as------------------------------------------------  243 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFAS------------------------------------------------  243 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccC------------------------------------------------
Confidence            999999876666776654   69999998421                                                


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                            .......+|...|.+|.|++.+ .+|+|.+.|++|.+|+.++++.             
T Consensus       244 ----------------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-------------  288 (1049)
T KOG0307|consen  244 ----------------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-------------  288 (1049)
T ss_pred             ----------------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-------------
Confidence                                  0011235788889999999876 8999999999999999987642             


Q ss_pred             cceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEeecCCcEEEeCCCCCCCC
Q 013545          352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                                                      +.++.....++..+.|.|..- .++.++-||.|.|+.+.+.-.+
T Consensus       289 --------------------------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~  332 (1049)
T KOG0307|consen  289 --------------------------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTD  332 (1049)
T ss_pred             --------------------------------eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCcc
Confidence                                            122333457789999999876 5667888999999988765544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.6e-18  Score=162.03  Aligned_cols=267  Identities=16%  Similarity=0.287  Sum_probs=164.8

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+..|...|..+.|.|.. -.|++++.||+|++|++++...-  .+  ....++     .++++|.++|.|+++.+ +++
T Consensus       289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s--~~--~~~epi-----~tfraH~gPVl~v~v~~-n~~  357 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKS--AE--KDVEPI-----LTFRAHEGPVLCVVVPS-NGE  357 (577)
T ss_pred             eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCc--cc--cceeee-----EEEecccCceEEEEecC-Cce
Confidence            355799999999998754 47999999999999999652210  00  111222     34679999999998876 789


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +++|||.|++|+.|++- ..               ..|+..                +|.  ......+.||.+.|+.++
T Consensus       358 ~~ysgg~Dg~I~~w~~p-~n---------------~dp~ds----------------~dp--~vl~~~l~Ghtdavw~l~  403 (577)
T KOG0642|consen  358 HCYSGGIDGTIRCWNLP-PN---------------QDPDDS----------------YDP--SVLSGTLLGHTDAVWLLA  403 (577)
T ss_pred             EEEeeccCceeeeeccC-CC---------------CCcccc----------------cCc--chhccceeccccceeeee
Confidence            99999999999999763 00               011110                000  112245789999999999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      +|+... .|++||.||++|+|+...... +++...+                                            
T Consensus       404 ~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~--------------------------------------------  437 (577)
T KOG0642|consen  404 LSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPK--------------------------------------------  437 (577)
T ss_pred             eccccc-ceeeecCCceEEeeccCCcCc-cccCCcc--------------------------------------------
Confidence            999876 478999999999998764321 1110000                                            


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe---eCCCCCceeeeeeeE----Eecc
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW---DVESGRNTLVNFETV----RLQT  350 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w---d~~~~~~~~~~~~~~----~~~~  350 (441)
                                               ..+..++|+|-.....+  ...+.+.+.+   +++..... ..+...    ....
T Consensus       438 -------------------------e~g~Plsvd~~ss~~a~--~~~s~~~~~~~~~~~ev~s~~-~~~~s~~~~~~~~~  489 (577)
T KOG0642|consen  438 -------------------------EHGYPLSVDRTSSRPAH--SLASFRFGYTSIDDMEVVSDL-LIFESSASPGPRRY  489 (577)
T ss_pred             -------------------------ccCCcceEeeccchhHh--hhhhcccccccchhhhhhhhe-eeccccCCCccccc
Confidence                                     00011111211111000  0001111111   11111100 000000    0000


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      .....+...+...+.+.+.. ..++++|..+++.++....|...++++++-|.|-+|++++.|+.+++|.....
T Consensus       490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            11223333444444444433 58999999999999999999999999999999999999999999999988543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=2.2e-17  Score=164.25  Aligned_cols=264  Identities=20%  Similarity=0.307  Sum_probs=178.7

Q ss_pred             CCceeEEEccC-CCCcEEEEeeCCCcEEEEECC-CCcccCCCCceeccceeEEeecccccC----cccceeEEEEeeCCC
Q 013545           43 KGSINSLQVDL-TEERYLLSGASDSSVAVYDVQ-RATDYEGGGHIAKHRSVFVVDKQHEHG----HKYAISSAIWYPVDT  116 (441)
Q Consensus        43 ~~~V~~l~~s~-~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~~~~~~  116 (441)
                      ...|+.|.+-. .+..++++|+.||.||||+-. ....          +..++.......+    -.+.=.-+.|-. ..
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~----------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~ 1177 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK----------KPELVTAWSSLSDQLPGARGTGLVVDWQQ-QS 1177 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccC----------CceeEEeeccccccCccCCCCCeeeehhh-hC
Confidence            46899998742 223479999999999999742 2111          1111111111111    111111123443 34


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecCCCCC-
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDG-  192 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~h~~~-  192 (441)
                      .+|+++|+-+.|||||++...++..+.........+++++.....++++|..||.|++||.+...   .+...+.|... 
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            46777777899999999999888888766544445566655556789999999999999987654   46677889888 


Q ss_pred             -eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          193 -IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       193 -v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                       |..+.+.+.|-.-|+||+.||.|++||+|.......+.                                         
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~----------------------------------------- 1296 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT----------------------------------------- 1296 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----------------------------------------
Confidence             99999998775558999999999999998531000000                                         


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceee--cc-CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH--YG-AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  348 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~-~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~  348 (441)
                                                  ...|  .| .+++|..|+....+|+|+. +.|+||++...+..     .++.
T Consensus      1297 ----------------------------iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~-----~~k~ 1342 (1387)
T KOG1517|consen 1297 ----------------------------IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN-----IIKY 1342 (1387)
T ss_pred             ----------------------------eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc-----cccc
Confidence                                        0011  13 5899999999999999999 99999998754321     1110


Q ss_pred             ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                                  .+..+                      .--.+.+.|++|+|---+||.|+.|.+|.|+..+.++..
T Consensus      1343 ------------n~~F~----------------------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~~ 1386 (1387)
T KOG1517|consen 1343 ------------NPGFM----------------------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRLT 1386 (1387)
T ss_pred             ------------Ccccc----------------------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCCC
Confidence                        00000                      001245799999999888999999999999998877654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=1.5e-16  Score=139.37  Aligned_cols=293  Identities=17%  Similarity=0.224  Sum_probs=201.3

Q ss_pred             eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCC-CC-ceeccceeEEeecccccCcccceeEEEEee------CCCC
Q 013545           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEG-GG-HIAKHRSVFVVDKQHEHGHKYAISSAIWYP------VDTG  117 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~------~~~~  117 (441)
                      .-.+.|+| +|.-|++-+.|.++.+|++-....... .+ ........+.      +.-...|...+|.+      ++..
T Consensus        52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r------~~eg~tvydy~wYs~M~s~qP~t~  124 (406)
T KOG2919|consen   52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR------YQEGETVYDYCWYSRMKSDQPSTN  124 (406)
T ss_pred             hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE------eccCCEEEEEEeeeccccCCCccc
Confidence            44678997 466799999999999999743211100 01 1111111111      11223455566653      4667


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCC------eeEEEeeccCCCCccEEEEEeCCCcEEEEEC-CCCce--eee---
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASGAI--SQT---  185 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl-~~~~~--~~~---  185 (441)
                      ++|+.+.|.-|++||.-+|+....+..-.      ...++.|+|++.   .|.+ +....|++||+ +.|..  ...   
T Consensus       125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhhh
Confidence            99999999999999999999876665321      245788888753   4544 45789999999 45532  111   


Q ss_pred             --ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          186 --LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       186 --l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                        -.+..+.+.+++|+|.....++.|+--.++-||.-.....+.+                                   
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l-----------------------------------  245 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL-----------------------------------  245 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee-----------------------------------
Confidence              1245788999999998776778887666666665432221111                                   


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCcEEEeeCCCCCceeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~~wd~~~~~~~~~~  342 (441)
                                                          +.+|.+-|+.|+|++||+.|.+|+. |-.|..||++..+..+..
T Consensus       246 ------------------------------------lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  246 ------------------------------------LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             ------------------------------------ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence                                                2368889999999999999999865 678999999976543322


Q ss_pred             eeeEEeccCcceEEEeeCCCcEEEEe-CCCceEEEEccC-CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          343 FETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      +.......+..+.+...+++..++++ ..+.|++||..+ |.....+..|...|+.|+++|-=..++|++-.   |++..
T Consensus       290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~  366 (406)
T KOG2919|consen  290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKY  366 (406)
T ss_pred             hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc---eeecC
Confidence            22222334556677778889999888 457899999988 78888899999999999999997778887655   66655


Q ss_pred             CCC
Q 013545          421 SRH  423 (441)
Q Consensus       421 ~~~  423 (441)
                      ++.
T Consensus       367 ~~d  369 (406)
T KOG2919|consen  367 PKD  369 (406)
T ss_pred             CCc
Confidence            544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=1.4e-16  Score=143.50  Aligned_cols=322  Identities=16%  Similarity=0.211  Sum_probs=196.5

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      .+|+++.|.......|+||+.|..|+||-+.+........      .+  .-...+.+|..+|+++.|+| +|++||||+
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~------~V--~y~s~Ls~H~~aVN~vRf~p-~gelLASg~   84 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM------KV--EYLSSLSRHTRAVNVVRFSP-DGELLASGG   84 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCce------eE--EEeecccCCcceeEEEEEcC-CcCeeeecC
Confidence            6899999986555589999999999999987654321110      11  11123457999999998887 799999999


Q ss_pred             CCCcEEEEECC--------C-----C-eEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee
Q 013545          124 YDHYVKVWDTN--------C-----T-RVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (441)
Q Consensus       124 ~D~~i~iWd~~--------~-----~-~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l  186 (441)
                      +++.|.+|...        +     . ..+....   +...++.++++++   +..+++++.|+.+++||+..|.....+
T Consensus        85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d---~~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD---SNFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC---CceeeeeeccceEEEEEeccceeEeec
Confidence            99999999765        2     1 0111111   2245677777775   458899999999999999999999999


Q ss_pred             cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      .+|..-|..++|.|-+++ +++=|.|...+.+.+................                          ....
T Consensus       162 ~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~--------------------------~~~~  214 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPA--------------------------KAFN  214 (434)
T ss_pred             cccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEeee--------------------------cccC
Confidence            999999999999999986 5788888877777765432211110000000                          0000


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec----CCcE-----EEeeCCCCC
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----DSRI-----RLWDVESGR  337 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----D~~i-----~~wd~~~~~  337 (441)
                      .             ..+.....++...         -..-...++|+|||.++++.+.    ++.+     ++++-...+
T Consensus       215 ~-------------~e~~s~rLfhDeT---------lksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~  272 (434)
T KOG1009|consen  215 E-------------REGKSTRLFHDET---------LKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK  272 (434)
T ss_pred             C-------------CCcceeeeeecCc---------hhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence            0             0000000000000         0122456788899988886532    1222     233211111


Q ss_pred             ceee------------eeeeE--EeccCcceE-EEeeCCCcEEEEeCCCceEEEEccCCceEeee-cccccceEEEEEcC
Q 013545          338 NTLV------------NFETV--RLQTSKPIQ-LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSS  401 (441)
Q Consensus       338 ~~~~------------~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fsp  401 (441)
                      ....            .+..+  .+....... +..-|-....++++...+.+||-.+-.++... .-|-..|++++||+
T Consensus       273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~  352 (434)
T KOG1009|consen  273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD  352 (434)
T ss_pred             CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC
Confidence            0000            00000  000000000 11112334445566688999987765555432 34667899999999


Q ss_pred             CCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          402 QDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       402 d~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ||..|+-.|.||-+-+=......+.
T Consensus       353 dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  353 DGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             CCcEEEEeccCCceEEEEEcchhcc
Confidence            9999999999998777666655544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=4.8e-15  Score=144.10  Aligned_cols=292  Identities=27%  Similarity=0.477  Sum_probs=205.2

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccC-cccceeEEEE-eeCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIW-YPVD  115 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~-~~~~  115 (441)
                      ...+|...|.++.+.+ .+..++.++.|+.+.+|+.......           +...     .+ +...+..+.+ .+ +
T Consensus        60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~-~  121 (466)
T COG2319          60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKL-----------IKSL-----EGLHDSSVSKLALSSP-D  121 (466)
T ss_pred             eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCcee-----------EEEE-----eccCCCceeeEEEECC-C
Confidence            4568999999999985 5778999999999999998755300           0000     11 1123444444 33 4


Q ss_pred             CC-EEEEEeC-CCcEEEEECCC-CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeC-CCcEEEEECCCCceeeeecCCC
Q 013545          116 TG-LFVTGSY-DHYVKVWDTNC-TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       116 ~~-~l~sgs~-D~~i~iWd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~-d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                      +. +++..+. |+.+++||+.. ......+. +...+..+.+++...   .+++++. |+.+++|++.++..+..+.+|.
T Consensus       122 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (466)
T COG2319         122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAGHT  198 (466)
T ss_pred             cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeeccCC
Confidence            44 5555455 99999999987 45444444 445677788888654   6666664 9999999999988899999999


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      ..|.+++|+|+++.++++++.|++|++||.+.+.+...                                          
T Consensus       199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------------------------------------  236 (466)
T COG2319         199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------------------------------------  236 (466)
T ss_pred             CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee------------------------------------------
Confidence            99999999998874566669999999998764332220                                          


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                  ....|.... -..|+|++.++++++.|+.+++|++........   ....+.
T Consensus       237 ----------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~  284 (466)
T COG2319         237 ----------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR---TLSGHS  284 (466)
T ss_pred             ----------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE---EEecCC
Confidence                                        011233332 227999999999999999999999987654111   112223


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeec--ccccceEEEEEcCCCCeEEEe-ecCCcEEEeCCCCCC
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFR--GHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPSRHI  424 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~--gh~~~v~~v~fspd~~~l~s~-s~D~~i~vW~~~~~~  424 (441)
                      .....+.+.+++..+++++. ..+++|+..+........  +|...+..+.|++++..++.+ ..|+.+++|+.....
T Consensus       285 ~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            44455677776666666332 458999998888777766  898899999994343555555 688999999998776

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=2.6e-15  Score=142.72  Aligned_cols=280  Identities=12%  Similarity=0.197  Sum_probs=170.0

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE-eCCCcEEEEECC-C
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYDHYVKVWDTN-C  135 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg-s~D~~i~iWd~~-~  135 (441)
                      ..++.+.|+.|++||+.+.....      .. ..       . .+.+....+.++| ++++|+.+ ..++.|.+|++. +
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~------~~-~~-------~-~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~   67 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALT------LL-QV-------V-DVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADD   67 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCcee------ee-eE-------E-ecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCC
Confidence            34556789999999995321110      00 00       0 1112344566766 77877655 458899999986 3


Q ss_pred             CeE--EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cc---eeeeecCCCCCeEEEEEecCCCcEEEEe
Q 013545          136 TRV--VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GA---ISQTLSGHRDGIMTVEWSTSSEWILVTG  209 (441)
Q Consensus       136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~---~~~~l~~h~~~v~~v~fsp~~~~~l~s~  209 (441)
                      +..  +......+....+.+++++  ..++++...++.|.+|++++ +.   .+..+.+ .....++.|+|++++++++.
T Consensus        68 g~l~~~~~~~~~~~p~~i~~~~~g--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         68 GALTFAAESPLPGSPTHISTDHQG--RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             CceEEeeeecCCCCceEEEECCCC--CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEee
Confidence            432  3333344445566777653  34444555688999999964 32   2233333 33457789999999877888


Q ss_pred             ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccccc
Q 013545          210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL  289 (441)
Q Consensus       210 s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (441)
                      ..++.|.+||+.+.+.+.....   .                                                  ....
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~~---~--------------------------------------------------~~~~  171 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQEP---A--------------------------------------------------EVTT  171 (330)
T ss_pred             CCCCEEEEEEECCCCcccccCC---C--------------------------------------------------ceec
Confidence            8889999999875321100000   0                                                  0000


Q ss_pred             CCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCcEEEeeCCCCCceeeeeeeEEecc------CcceEEEeeCCC
Q 013545          290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQT------SKPIQLATTQDP  362 (441)
Q Consensus       290 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  362 (441)
                                ..  ......++|+|||+++.+... +++|.+|++.................      ..+..+.++|++
T Consensus       172 ----------~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        172 ----------VE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ----------CC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence                      00  012456899999999877765 89999999974211111111111111      112346788999


Q ss_pred             cEEEEeCC--CceEEEEccCCceEeeeccccc---ceEEEEEcCCCCeEEEeec-CCcEEEeCCC
Q 013545          363 AVVFVPCM--TAVKAFDIWSGKTCLTFRGHYE---YVNCCCFSSQDQELYTGGN-DRQILVWCPS  421 (441)
Q Consensus       363 ~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~---~v~~v~fspd~~~l~s~s~-D~~i~vW~~~  421 (441)
                      ..++++..  ..+.+|++.+.....++.+|..   ....++|+|||++|+++.. +++|.+|+++
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            99888754  5789999865432233333422   4568999999999997765 8999999764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.1e-18  Score=170.67  Aligned_cols=212  Identities=19%  Similarity=0.355  Sum_probs=164.1

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .-|.|.|..|.|++..+++||||++||.|.|||+.+.+..-.-+               .......|.++.|......+|
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------~~~~~~eI~~lsWNrkvqhIL  177 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------SQAPPSEIKCLSWNRKVSHIL  177 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------CCCCcccceEeccchhhhHHh
Confidence            35999999999999888899999999999999997654321000               113456799999988778899


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeC-CCcEEEEECCCC-ceeeeecCCCCCeE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASG-AISQTLSGHRDGIM  194 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~-d~~I~vwdl~~~-~~~~~l~~h~~~v~  194 (441)
                      +|++.++++.|||++..+.+..+...+   .+..+.|+|+..+..++|+... .-.|.+||++.. .+++++++|...|.
T Consensus       178 AS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil  257 (1049)
T KOG0307|consen  178 ASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL  257 (1049)
T ss_pred             hccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccccee
Confidence            999999999999999887766655433   3667889998665444443322 126999998754 46788999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      ++.|++.+..+|+|++.|+.|.+|+..+++.+..+                                             
T Consensus       258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~---------------------------------------------  292 (1049)
T KOG0307|consen  258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL---------------------------------------------  292 (1049)
T ss_pred             eeccCCCCchhhhcccCCCCeeEecCCCceEeeec---------------------------------------------
Confidence            99999998778999999999999999876533221                                             


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCC
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                ....+++..+.|+|... .+++++-||.|.|+.+....
T Consensus       293 --------------------------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  293 --------------------------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             --------------------------CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                                      01124678899999876 78888999999999988654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=1.6e-18  Score=168.39  Aligned_cols=237  Identities=23%  Similarity=0.384  Sum_probs=173.4

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      .||..+|.|+++.. .|.+++||++|..+|||..+++.++..... .+.+...+.+.   .+.++|+++.|..|++|-+.
T Consensus       187 lgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~---~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS---NNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             Hhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccch---hhhhhhhcccCceEEEEecC
Confidence            49999999988865 588999999999999999999888776553 34454444443   45688999999999999999


Q ss_pred             CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      ++.++..+.||++.|++++|+|-     .+.+.||++++||.+-.    .+..                         .+
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~----~~~y-------------------------~p  308 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE----PRIY-------------------------VP  308 (1113)
T ss_pred             CCchHHHHhccccceeeeccCcc-----ccCCCCCceEecccccc----cccc-------------------------CC
Confidence            99999999999999999999984     47789999999998710    0000                         00


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC-
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR-  337 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~-  337 (441)
                      ++. .+                                     .....+-++.|..++..++||+.|+..+.|.+.-.. 
T Consensus       309 rp~-~~-------------------------------------~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~  350 (1113)
T KOG0644|consen  309 RPL-KF-------------------------------------TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW  350 (1113)
T ss_pred             CCC-Cc-------------------------------------ccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence            000 00                                     001335667788889999999999999998765321 


Q ss_pred             -ceeeeeeeEEeccCcceEEEeeCCC-cEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEE-EeecCC
Q 013545          338 -NTLVNFETVRLQTSKPIQLATTQDP-AVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-TGGNDR  413 (441)
Q Consensus       338 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~-s~s~D~  413 (441)
                       .....|.+            .+.+. .+.+++ ..-...+|++.+|.+++.+.||..++..+.|+|-+..++ +++.||
T Consensus       351 ~~~~lif~t------------~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg  418 (1113)
T KOG0644|consen  351 RSNLLIFVT------------RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG  418 (1113)
T ss_pred             hccceEEEe------------ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence             11111111            11111 111111 123567899999999999999999999999999877766 999999


Q ss_pred             cEEEeCCCCCC
Q 013545          414 QILVWCPSRHI  424 (441)
Q Consensus       414 ~i~vW~~~~~~  424 (441)
                      .+.|||+-.+.
T Consensus       419 st~iwdi~eg~  429 (1113)
T KOG0644|consen  419 STIIWDIWEGI  429 (1113)
T ss_pred             ceEeeecccCC
Confidence            99999987554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=6.7e-16  Score=146.20  Aligned_cols=168  Identities=20%  Similarity=0.309  Sum_probs=112.3

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc-ceeEEEEeeCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWYPVDT  116 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~  116 (441)
                      ++.+|...|+.+.|+|-.+.+|+|||.|..++||.+..+-...    + +...+.       .||.. .|-++.|+|...
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~----L-Sape~~-------~g~~~~~vE~l~fHpTaD  141 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK----L-SAPEID-------VGGGNVIVECLRFHPTAD  141 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc----c-CCccee-------ecCCceEEEEeecccCcC
Confidence            4668999999999998777789999999999999987543211    1 001111       14443 466777887656


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCCCCCe-
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGHRDGI-  193 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h~~~v-  193 (441)
                      .+|+++ .-+++.|||+.+++.+..... ...+.+..|+.++   .+|++++.|..|+|||... ++.++...+|.+.- 
T Consensus       142 gil~s~-a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG---~llatscKdkqirifDPRa~~~piQ~te~H~~~rd  217 (1012)
T KOG1445|consen  142 GILASG-AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDG---KLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRD  217 (1012)
T ss_pred             ceEEec-cCceEEEEEcccCceeecccCCchhhhccccccCC---ceEeeecCCcceEEeCCccCCCccccccccccchh
Confidence            677766 458999999999988765553 4456666677654   5899999999999999865 45677777776542 


Q ss_pred             EEEEEecCCCcEEEEeecC----CcEEEEEcCC
Q 013545          194 MTVEWSTSSEWILVTGGCD----GAIRFWDIRR  222 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~D----g~I~iWD~~~  222 (441)
                      .-+.|..+-.+ |+|.+.+    ..|++||++.
T Consensus       218 sRv~w~Gn~~r-lisTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  218 SRVLWAGNWER-LISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             heeeeccchhh-hhhcccchhhheeeeeeeccc
Confidence            12444433222 3343332    3466666543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=8.8e-17  Score=144.30  Aligned_cols=206  Identities=21%  Similarity=0.326  Sum_probs=146.9

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEE-------EEEe-cCCeeEEEeeccCCCCccEEEEEeCCC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV-------MNFK-MPGKVYRTAMSPLAASHMLIAAGTEDV  170 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~  170 (441)
                      ..||+++|..+.|.|.+...+||||.|.+|.||++-.+-..       ..+. +...+--+.++|...  ++|++++.|+
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~Dn  154 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSDN  154 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCCc
Confidence            35999999999999999999999999999999997544322       2222 233466677888654  5788889999


Q ss_pred             cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      .|.+||+.+|+.+-++. |.+.|.++.|+.+|. +|++.+.|+.||+||.|+++.+...                     
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~---------------------  211 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEG---------------------  211 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeec---------------------
Confidence            99999999999888887 999999999999997 5899999999999999987543321                     


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEe---ecCC
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSA---GSDS  326 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sg---s~D~  326 (441)
                                                                        .+|.+. -..+.|-.+|..+-||   ..++
T Consensus       212 --------------------------------------------------~~heG~k~~Raifl~~g~i~tTGfsr~seR  241 (472)
T KOG0303|consen  212 --------------------------------------------------VAHEGAKPARAIFLASGKIFTTGFSRMSER  241 (472)
T ss_pred             --------------------------------------------------ccccCCCcceeEEeccCceeeecccccccc
Confidence                                                              122221 1233466677644444   4578


Q ss_pred             cEEEeeCCCCCceeeeeeeEEeccC-cceEEEeeCCCcEEEEeC--CCceEEEEccCCc
Q 013545          327 RIRLWDVESGRNTLVNFETVRLQTS-KPIQLATTQDPAVVFVPC--MTAVKAFDIWSGK  382 (441)
Q Consensus       327 ~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~  382 (441)
                      ++-+||...-.... .+.  .+..+ +...--+.+|..++++.+  ++.+|.|.+.+..
T Consensus       242 q~aLwdp~nl~eP~-~~~--elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  242 QIALWDPNNLEEPI-ALQ--ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ceeccCcccccCcc-eeE--EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            89999987654321 122  23333 333334456666777654  4689999987655

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.1e-16  Score=137.73  Aligned_cols=236  Identities=17%  Similarity=0.310  Sum_probs=153.5

Q ss_pred             ecCCCCceeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC-C
Q 013545           39 VSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-T  116 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~  116 (441)
                      -+.|.++|..+.|.++ -|+.+|++|.|++++||.-+... .+..+.....       .......+..|.++.|.|.. |
T Consensus        55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~-~~~~~~~Wv~-------~ttl~DsrssV~DV~FaP~hlG  126 (361)
T KOG2445|consen   55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS-EEAHGRRWVR-------RTTLVDSRSSVTDVKFAPKHLG  126 (361)
T ss_pred             EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc-cccccceeEE-------EEEeecCCcceeEEEecchhcc
Confidence            4579999999998744 37889999999999999743111 1110100101       11223455679999997754 6


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEec--------------CCeeEEEeeccCCCCccEEEEEeCC-----CcEEEEEC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM--------------PGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDI  177 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~las~s~d-----~~I~vwdl  177 (441)
                      -.||+++.||++|||+.-..--+..+++              .....++.+.+.-....+||+|+.+     +.++||..
T Consensus       127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence            6799999999999998644322222221              1234556666544456788888765     47888876


Q ss_pred             CCC--c--eeeeecCCCCCeEEEEEecCC-C--cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          178 ASG--A--ISQTLSGHRDGIMTVEWSTSS-E--WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       178 ~~~--~--~~~~l~~h~~~v~~v~fsp~~-~--~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      ..+  +  .+.++.+|+++|+.++|.|+- +  .+||+++.|| |+||.++.... . ++..             .....
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s-~-i~~e-------------e~~~~  270 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS-A-IEEE-------------EVLAP  270 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc-h-hhhh-------------cccCC
Confidence            543  2  345788999999999999983 2  3789999999 99999874210 0 0000             00000


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                      ...                             ..    +.   +.....+..|.+.|..+.|.-.|..|+|.|.||.||+
T Consensus       271 ~~~-----------------------------~~----l~---v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL  314 (361)
T KOG2445|consen  271 DLM-----------------------------TD----LP---VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL  314 (361)
T ss_pred             CCc-----------------------------cc----cc---eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence            000                             00    00   0001124579999999999999999999999999999


Q ss_pred             eeCC
Q 013545          331 WDVE  334 (441)
Q Consensus       331 wd~~  334 (441)
                      |...
T Consensus       315 Wkan  318 (361)
T KOG2445|consen  315 WKAN  318 (361)
T ss_pred             hhhh
Confidence            9654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=1.6e-14  Score=140.37  Aligned_cols=289  Identities=28%  Similarity=0.502  Sum_probs=203.6

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeC-CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ...+.+|...|..++|+| +++++++++. |+.+++|++......                 ....+|...|.++.+.+ 
T Consensus       148 ~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~~~-  208 (466)
T COG2319         148 IRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPL-----------------STLAGHTDPVSSLAFSP-  208 (466)
T ss_pred             EEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceE-----------------EeeccCCCceEEEEEcC-
Confidence            344678999999999997 4668888886 999999998753211                 11235888999999985 


Q ss_pred             CCC-EEEEEeCCCcEEEEECCCCeEEE-EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCC
Q 013545          115 DTG-LFVTGSYDHYVKVWDTNCTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRD  191 (441)
Q Consensus       115 ~~~-~l~sgs~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~  191 (441)
                      ++. ++++++.|++|++||...+..+. .+..........+++..   .++++++.|+.+++|++..... ...+.+|..
T Consensus       209 ~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  285 (466)
T COG2319         209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS  285 (466)
T ss_pred             CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence            665 66666999999999988777666 34332222111455543   4677899999999999987764 444478899


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      .+.++.|.|++.. +++++.|+.+++||++.........                                         
T Consensus       286 ~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~-----------------------------------------  323 (466)
T COG2319         286 SVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT-----------------------------------------  323 (466)
T ss_pred             cEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee-----------------------------------------
Confidence            9999999997765 5668889999999887543221110                                         


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEe-ecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA-GSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                  ...|...+..+.|.+++..++.+ ..|+.+++|++.... ...   .... .
T Consensus       324 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~---~~~~-~  370 (466)
T COG2319         324 ----------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLK---TLEG-H  370 (466)
T ss_pred             ----------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeE---EecC-C
Confidence                                        01344567888884343555555 788999999998765 111   1111 1


Q ss_pred             CcceEEEeeCCCcEEEE--eCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          351 SKPIQLATTQDPAVVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~--~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      .....+.+.+ ....+.  .....+.+|+............+...+..+.+++++..+++++.+.++++|+..+
T Consensus       371 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         371 SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            1123444444 322222  2446899999988887777766657899999999999999999999999999987

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.74  E-value=5.1e-16  Score=136.12  Aligned_cols=244  Identities=16%  Similarity=0.253  Sum_probs=174.1

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCC-------CeE-------EEEEecCCeeEEEeecc----CCCCccEEEEEeCC
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNC-------TRV-------VMNFKMPGKVYRTAMSP----LAASHMLIAAGTED  169 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~-------~~~-------~~~~~~~~~~~~~~~~~----~~~~~~~las~s~d  169 (441)
                      .+.|+| ||.-|++-+.|..+++|++-.       +..       ...+..++.++...+-+    +.++..++|+.+.+
T Consensus        54 gckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   54 GCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             cceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            467877 888999999999999998631       111       11222345566655543    33556789999999


Q ss_pred             CcEEEEECCCCceeeeecC--CCCCe---EEEEEecCCCcEEEEeecCCcEEEEEcC-CCceeeEeccCCccccCCCCcc
Q 013545          170 VQVRLCDIASGAISQTLSG--HRDGI---MTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRPPLL  243 (441)
Q Consensus       170 ~~I~vwdl~~~~~~~~l~~--h~~~v---~~v~fsp~~~~~l~s~s~Dg~I~iWD~~-~~~~~~~~~~~~~~~~~~~~~~  243 (441)
                      .-|++||.-+|++...+++  |.+++   .++.|+|||..++  ++-.+.||+||+. .+....+.-..           
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~-----------  199 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTV-----------  199 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhh-----------
Confidence            9999999999998877764  55554   5899999999754  4567899999994 33211110000           


Q ss_pred             cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEe
Q 013545          244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSA  322 (441)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sg  322 (441)
                                                           .                ....+..+-+.+++|+|-. +.++.|
T Consensus       200 -------------------------------------~----------------~~k~gq~giisc~a~sP~~~~~~a~g  226 (406)
T KOG2919|consen  200 -------------------------------------T----------------KGKFGQKGIISCFAFSPMDSKTLAVG  226 (406)
T ss_pred             -------------------------------------h----------------cccccccceeeeeeccCCCCcceeee
Confidence                                                 0                0001234568899999965 589999


Q ss_pred             ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEcc-CCceEeeecccccc-eEEEE
Q 013545          323 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW-SGKTCLTFRGHYEY-VNCCC  398 (441)
Q Consensus       323 s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~-~~~~~~~l~gh~~~-v~~v~  398 (441)
                      +...++-|+.-..+++..    .+..+.+.+..+.+.++|..+++++.  ..+..||+. .+..+..|..|.+. -..|-
T Consensus       227 sY~q~~giy~~~~~~pl~----llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~  302 (406)
T KOG2919|consen  227 SYGQRVGIYNDDGRRPLQ----LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRIL  302 (406)
T ss_pred             cccceeeeEecCCCCcee----eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEE
Confidence            999999998877665432    22345677888999999999999876  578999994 46677888888762 22333


Q ss_pred             --EcCCCCeEEEeecCCcEEEeCCCC
Q 013545          399 --FSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       399 --fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                        ..|++++|+||+.||.|++||..+
T Consensus       303 FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  303 FDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             EecCCCCceeeccCCCccEEEEecCC
Confidence              458899999999999999999876

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.73  E-value=4.5e-16  Score=134.50  Aligned_cols=166  Identities=18%  Similarity=0.295  Sum_probs=125.6

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee-CCCCEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGLF  119 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~l  119 (441)
                      .|-+.|.|+.|.| +++-|++-. |..|.+|+++......           ..+......+|....++..|+| .++.++
T Consensus       121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~v-----------aev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIV-----------AEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchh-----------eeecccccccccceecccccCCCCccceE
Confidence            4557999999998 566677765 8999999998665311           1111111124666677888988 567777


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeEEE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV  196 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v  196 (441)
                      ++. .|++++.||+++..+...+.  +...+..+.+.|.  ...+|++|+.|+.|++||++.. .+++++.+|...|++|
T Consensus       188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn--kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V  264 (370)
T KOG1007|consen  188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN--KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV  264 (370)
T ss_pred             EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCC--ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence            776 67899999999877655443  1223666667664  4578999999999999999765 5788999999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      .|+|..+.+++|||.|..|.+|...+
T Consensus       265 Rfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  265 RFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             EecCccceEEEecCCCceeEEEeccc
Confidence            99999877899999999999998653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=4.2e-15  Score=125.59  Aligned_cols=172  Identities=18%  Similarity=0.351  Sum_probs=118.2

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      .|.+-+++|+ +++|+.|+.+|+|.+..+.....-..  .......++     ..++|.++|..++|.   ..+|++|++
T Consensus        12 tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~iv-----~eqahdgpiy~~~f~---d~~Lls~gd   80 (325)
T KOG0649|consen   12 TVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKIV-----PEQAHDGPIYYLAFH---DDFLLSGGD   80 (325)
T ss_pred             HHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhcccc--CCCCCccee-----eccccCCCeeeeeee---hhheeeccC
Confidence            3566678874 78999999999999998764321110  001111111     125899999999997   347778765


Q ss_pred             CCcEEEEECCCCeE------EEEEecC--------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545          125 DHYVKVWDTNCTRV------VMNFKMP--------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       125 D~~i~iWd~~~~~~------~~~~~~~--------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                       |.|+=|.-+....      +...+.+        -.++...+.|.  .+.+|.+| .|+.++-||+++|+..++++||+
T Consensus        81 -G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~--enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   81 -GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS--ENSILFAG-GDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             -ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC--CCcEEEec-CCeEEEEEEecCCEEEEEEcCCc
Confidence             9999996432111      1111111        11333334443  23345444 79999999999999999999999


Q ss_pred             CCeEEEEE-ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCC
Q 013545          191 DGIMTVEW-STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ  233 (441)
Q Consensus       191 ~~v~~v~f-sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~  233 (441)
                      +-|.++.- +.+++  +.||++||++|+||++++++..+++...
T Consensus       157 DYvH~vv~R~~~~q--ilsG~EDGtvRvWd~kt~k~v~~ie~yk  198 (325)
T KOG0649|consen  157 DYVHSVVGRNANGQ--ILSGAEDGTVRVWDTKTQKHVSMIEPYK  198 (325)
T ss_pred             ceeeeeeecccCcc--eeecCCCccEEEEeccccceeEEecccc
Confidence            99999998 44443  5799999999999999999998887643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.8e-15  Score=149.12  Aligned_cols=200  Identities=17%  Similarity=0.268  Sum_probs=151.3

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      |...|.+++..   +.+|++|+.+++|.+|....++.-          .++       ...+-++.+++++. +|.++|.
T Consensus        55 ~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~----------~iL-------~Rftlp~r~~~v~g-~g~~iaa  113 (933)
T KOG1274|consen   55 SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEED----------TIL-------ARFTLPIRDLAVSG-SGKMIAA  113 (933)
T ss_pred             cCceeEEEeec---ccceEEeeccceEEEeeCCCCCcc----------cee-------eeeeccceEEEEec-CCcEEEe
Confidence            77788888875   347999999999999998765431          011       12334577777765 7899999


Q ss_pred             EeCCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC--------CCC
Q 013545          122 GSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--------RDG  192 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h--------~~~  192 (441)
                      ||+|-.|++-+..+......+ .+.+++.++.+.|.   ..+||+.+-||.|++||++++.+..++.+-        ...
T Consensus       114 gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~---~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i  190 (933)
T KOG1274|consen  114 GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK---GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI  190 (933)
T ss_pred             ecCceeEEEEeccccchheeecccCCceeeeeEcCC---CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence            999999999998877655544 46788999998885   458999999999999999999887766431        334


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      +.-++|+|++.. |+..+.|+.|++|+.........+.                                          
T Consensus       191 ~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr------------------------------------------  227 (933)
T KOG1274|consen  191 CTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLR------------------------------------------  227 (933)
T ss_pred             eeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeec------------------------------------------
Confidence            567999999765 4567789999999976532211110                                          


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                                 ...|...+..++|+|+|+|||+++.||.|.|||..+
T Consensus       228 ---------------------------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 ---------------------------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ---------------------------ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                                       011223388999999999999999999999999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.72  E-value=5.2e-16  Score=147.69  Aligned_cols=290  Identities=15%  Similarity=0.215  Sum_probs=201.8

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      .|+.++|-|+ |..|+-+. +..+.|||...+..                 .++.+||++.|.|++++. ||++||||+.
T Consensus        14 ci~d~afkPD-GsqL~lAA-g~rlliyD~ndG~l-----------------lqtLKgHKDtVycVAys~-dGkrFASG~a   73 (1081)
T KOG1538|consen   14 CINDIAFKPD-GTQLILAA-GSRLLVYDTSDGTL-----------------LQPLKGHKDTVYCVAYAK-DGKRFASGSA   73 (1081)
T ss_pred             chheeEECCC-CceEEEec-CCEEEEEeCCCccc-----------------ccccccccceEEEEEEcc-CCceeccCCC
Confidence            8999999975 44555543 45689999987753                 245679999999999987 8999999999


Q ss_pred             CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~  204 (441)
                      |+.|.+|..+- +-+..+.+...+.+..|.|..   ..|++++. +..-+|..+....++.  --...+.+.+|..||++
T Consensus        74 DK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP~~---h~LasCsL-sdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqy  146 (1081)
T KOG1538|consen   74 DKSVIIWTSKL-EGILKYSHNDAIQCMSFNPIT---HQLASCSL-SDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQY  146 (1081)
T ss_pred             ceeEEEecccc-cceeeeccCCeeeEeecCchH---HHhhhcch-hhccccChhhhhHHhh--hhheeEEEeeecCCCcE
Confidence            99999997642 224456677778888887753   35777764 3467888765432211  12456788999999985


Q ss_pred             EEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCC
Q 013545          205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS  284 (441)
Q Consensus       205 ~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (441)
                       |+-|-.||+|.|-+-......                                                          
T Consensus       147 -lalG~~nGTIsiRNk~gEek~----------------------------------------------------------  167 (1081)
T KOG1538|consen  147 -LALGMFNGTISIRNKNGEEKV----------------------------------------------------------  167 (1081)
T ss_pred             -EEEeccCceEEeecCCCCcce----------------------------------------------------------
Confidence             788999999998753210000                                                          


Q ss_pred             cccccCCCcccccccceeeccCeEEEEEccCCC-----EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          285 VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-----YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-----~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                         .        ..+..+...+|.+++|+|...     .++...=..++.++.++...     ....+.....|.++.+.
T Consensus       168 ---~--------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-----Igk~r~L~FdP~CisYf  231 (1081)
T KOG1538|consen  168 ---K--------IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-----IGKDRALNFDPCCISYF  231 (1081)
T ss_pred             ---E--------EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-----ecccccCCCCchhheec
Confidence               0        001123456799999999753     34555555566666554311     11111122356778889


Q ss_pred             CCCcEEEEeCCC-ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCCccCCcC
Q 013545          360 QDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQD  437 (441)
Q Consensus       360 ~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~~~~~~~  437 (441)
                      ++|.++..++.. .+++|- ..|-.+.++.....+||.|+..|++++++-|..||||-.+++-.....++...+|-..+
T Consensus       232 ~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~  309 (1081)
T KOG1538|consen  232 TNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRD  309 (1081)
T ss_pred             cCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhh
Confidence            999998887664 555554 45667777777888999999999999999999999999999877776666666655443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.72  E-value=1.2e-15  Score=137.11  Aligned_cols=170  Identities=19%  Similarity=0.362  Sum_probs=136.5

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ...||++.|..++|+|-++..|||||.|-+|.||.+-.+-...     ....++.     .+.||...|..+.|+|.-.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~ltepvv-----~L~gH~rrVg~V~wHPtA~N  145 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLTEPVV-----ELYGHQRRVGLVQWHPTAPN  145 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----CcccceE-----EEeecceeEEEEeecccchh
Confidence            4568999999999999988899999999999999985432110     0011222     23589999999999998889


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC-eEEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG-IMTV  196 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~-v~~v  196 (441)
                      .|+|+|.|.+|.+|++.+++.+.++.++..+++..|+.++   .+|++.+.|..|+|||..+++.+..-.+|.+. -.-+
T Consensus       146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra  222 (472)
T KOG0303|consen  146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA  222 (472)
T ss_pred             hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCC---ceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence            9999999999999999999988888889999999888764   48999999999999999999998887788764 3456


Q ss_pred             EEecCCCcEEEEee----cCCcEEEEEcCC
Q 013545          197 EWSTSSEWILVTGG----CDGAIRFWDIRR  222 (441)
Q Consensus       197 ~fsp~~~~~l~s~s----~Dg~I~iWD~~~  222 (441)
                      -|-.+++ ++ |.+    .+..+-+||...
T Consensus       223 ifl~~g~-i~-tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  223 IFLASGK-IF-TTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             EEeccCc-ee-eeccccccccceeccCccc
Confidence            6777776 44 444    467889998653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.71  E-value=5.6e-16  Score=136.15  Aligned_cols=257  Identities=18%  Similarity=0.244  Sum_probs=173.9

Q ss_pred             CCCceeEEEccCCC---CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           42 HKGSINSLQVDLTE---ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        42 H~~~V~~l~~s~~~---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      |...-+.++|+.+-   +-+||.|+.-|.|+|.|+.++...                 ....||..+|+.+.+.|.+.++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------------~~~~ghG~sINeik~~p~~~ql  150 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------------KNYRGHGGSINEIKFHPDRPQL  150 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-----------------cceeccCccchhhhcCCCCCcE
Confidence            77777777766332   348999999999999999765421                 2345899999999999988889


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEec----CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-----------
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKM----PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-----------  183 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~-----------  183 (441)
                      ++|||.|.+||+|++++..++..+..    .+.+.++.++.++.   .++|++.|.++++|+++..+..           
T Consensus       151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSP  227 (385)
T ss_pred             EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence            99999999999999999999988753    35688888888654   7999999999999999732110           


Q ss_pred             --------------e---eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545          184 --------------Q---TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (441)
Q Consensus       184 --------------~---~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (441)
                                    .   +-.-|...|.|+.|-.  + +++|-|.++.|..|-....  -..++....     + .. + 
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl--~e~~~~vkp-----~-es-~-  294 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKL--EESIHNVKP-----P-ES-A-  294 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchh--hhhhhccCC-----C-cc-c-
Confidence                          0   1134777788888875  3 4679899999999975211  000000000     0 00 0 


Q ss_pred             ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE--EccCCCEEEEeec
Q 013545          247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK--VTEDGMYLLSAGS  324 (441)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~dg~~l~sgs~  324 (441)
                                                          ..+..           ...--...+.-|.  |.|-++.||.|.+
T Consensus       295 ------------------------------------~Ti~~-----------~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  295 ------------------------------------TTILG-----------EFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             ------------------------------------eeeee-----------EeccCccceEEEEEeecHHHHHHhhccC
Confidence                                                00000           0001123344454  5566889999999


Q ss_pred             CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEc
Q 013545          325 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDI  378 (441)
Q Consensus       325 D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~  378 (441)
                      .|.|.+||++...+......+.........+.+++.|+..++..|. ..|--||.
T Consensus       328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            9999999999765432211111122234557889999998888776 56777764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.71  E-value=8.8e-16  Score=141.57  Aligned_cols=272  Identities=14%  Similarity=0.197  Sum_probs=178.5

Q ss_pred             EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC--C
Q 013545           59 LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC--T  136 (441)
Q Consensus        59 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~--~  136 (441)
                      |..+|.-.+++|||+...+....          ++     .+...-++.++.|.+.+--.+++.+.|..+++|.-..  +
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~----------~~-----~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~   69 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSE----------YV-----HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP   69 (673)
T ss_pred             eeeeccCCceEEeecccccCccc----------cc-----cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC
Confidence            33444456789999875543211          00     0111123777888763322446667899999996432  2


Q ss_pred             eEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcE
Q 013545          137 RVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI  215 (441)
Q Consensus       137 ~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I  215 (441)
                      ++-..-+..+. ..++...  . ...++++|+..+.|+|||++..-+.+.+++|.+.|+++.|...+.+ +|+++..|.|
T Consensus        70 ~Vp~~~k~~gd~~~Cv~~~--s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdi  145 (673)
T KOG4378|consen   70 EVPRVRKLTGDNAFCVACA--S-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDI  145 (673)
T ss_pred             ccceeeccccchHHHHhhh--h-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcE
Confidence            22222222222 1222222  1 2257889999999999999977777889999999999999988775 7999999999


Q ss_pred             EEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccc
Q 013545          216 RFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS  295 (441)
Q Consensus       216 ~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (441)
                      -|-.+.++.....|.                                                                 
T Consensus       146 iih~~~t~~~tt~f~-----------------------------------------------------------------  160 (673)
T KOG4378|consen  146 IIHGTKTKQKTTTFT-----------------------------------------------------------------  160 (673)
T ss_pred             EEEecccCcccccee-----------------------------------------------------------------
Confidence            999887542110000                                                                 


Q ss_pred             ccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEE-eCC-Cc
Q 013545          296 SQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV-PCM-TA  372 (441)
Q Consensus       296 ~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~  372 (441)
                           .+....|.-|.|||-.+. |.+++.+|.|.+||+....+.   ++....+..+..-++++|....+++ .+. ..
T Consensus       161 -----~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk  232 (673)
T KOG4378|consen  161 -----IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHASEAHSAPCRGICFSPSNEALLVSVGYDKK  232 (673)
T ss_pred             -----cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cchhhhccCCcCcceecCCccceEEEecccce
Confidence                 001123667889988765 667899999999999876532   2222222233334667777665544 333 58


Q ss_pred             eEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          373 VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       373 ~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      +.+||+.+.+....|. ..-|...|+|+++|.+|+.|...|.|..+|+..-
T Consensus       233 i~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  233 INIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             EEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            9999998776665554 4457999999999999999999999999998643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.7e-16  Score=144.80  Aligned_cols=307  Identities=22%  Similarity=0.273  Sum_probs=212.6

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      +.+.+|.|.|+.+.|+ ..|..|+|||.|..|.+||-..+...                .....||...|.-..|.|..+
T Consensus       136 ~kL~~H~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------l~f~SGH~~NvfQaKFiP~s~  198 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPK----------------LSFESGHCNNVFQAKFIPFSG  198 (559)
T ss_pred             hcccCCCCccceeeec-ccCceeeccCccceEEeehhhccCcc----------------cccccccccchhhhhccCCCC
Confidence            4578999999999998 56889999999999999997654321                112237777777777777544


Q ss_pred             -CEEEEEeCCCcEEEEECC-CCeEE---EEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee--c-C
Q 013545          117 -GLFVTGSYDHYVKVWDTN-CTRVV---MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--S-G  188 (441)
Q Consensus       117 -~~l~sgs~D~~i~iWd~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l--~-~  188 (441)
                       .-+++++.|+.+|+=.+. ++.+.   ...++.+++..++.-|+.+  .-|.+++.|+.++-+|+.++.+...+  + .
T Consensus       199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~  276 (559)
T KOG1334|consen  199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREA  276 (559)
T ss_pred             CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeecc
Confidence             458999999999997653 34433   2345678888888888754  45778999999999999887654332  2 2


Q ss_pred             CCC---CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          189 HRD---GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       189 h~~---~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      +..   ...+++..|...+.|+.++.|..+|+||.|....-.    .                                 
T Consensus       277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~----~---------------------------------  319 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE----N---------------------------------  319 (559)
T ss_pred             CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc----c---------------------------------
Confidence            333   456889999988889999999999999987521000    0                                 


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce---e-e
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT---L-V  341 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~---~-~  341 (441)
                       +               +.+. .+.+..+     ......-|++++++.++.-|.+.-.|..|+++.-..+...   . .
T Consensus       320 -n---------------~~~~-~f~p~hl-----~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s  377 (559)
T KOG1334|consen  320 -N---------------GVLD-KFCPHHL-----VEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSS  377 (559)
T ss_pred             -c---------------chhh-hcCCccc-----cccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCc
Confidence             0               0000 0000000     0011234899999988888888888999999954432210   0 0


Q ss_pred             ---eeeeE--EeccCc--ceEE-EeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545          342 ---NFETV--RLQTSK--PIQL-ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       342 ---~~~~~--~~~~~~--~~~~-~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                         .+...  +.+.+.  +..+ -+.|...++++++. +.+-+|+-.+++.+..+.|-..-|+|+.-+|---.|||.|-|
T Consensus       378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             chhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence               00000  011111  1112 23455677777765 899999999999998888888899999999999999999999


Q ss_pred             CcEEEeCCC
Q 013545          413 RQILVWCPS  421 (441)
Q Consensus       413 ~~i~vW~~~  421 (441)
                      ..||||.+-
T Consensus       458 ~DVKIWTP~  466 (559)
T KOG1334|consen  458 HDVKIWTPL  466 (559)
T ss_pred             cceeeecCC
Confidence            999999994

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=8.2e-16  Score=144.79  Aligned_cols=241  Identities=18%  Similarity=0.258  Sum_probs=170.0

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      ..||++.|.++...+ .|..|||||.||+||||.+.++.++.++.+.+.+.+++|.|.+. ..+||++-... +.+.+..
T Consensus       396 yrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~-~~vLAvA~~~~-~~ivnp~  472 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSD-LCVLAVAVGEC-VLIVNPI  472 (733)
T ss_pred             EeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCC-ceeEEEEecCc-eEEeCcc
Confidence            359999999999987 79999999999999999999999999999999999999999764 34555554333 5554432


Q ss_pred             CCce-------------------------------------eeeecCCCCCeEEEEEecCCCcEEEEeecC---CcEEEE
Q 013545          179 SGAI-------------------------------------SQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFW  218 (441)
Q Consensus       179 ~~~~-------------------------------------~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D---g~I~iW  218 (441)
                      -|..                                     +...-.|...|..+.|+..|++ |++...+   ..|-|.
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY-latV~~~~~~~~VliH  551 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY-LATVMPDSGNKSVLIH  551 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce-EEEeccCCCcceEEEE
Confidence            2200                                     1112246677888888888886 4554332   356666


Q ss_pred             EcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccc
Q 013545          219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD  298 (441)
Q Consensus       219 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (441)
                      ++...+..                                                                       .
T Consensus       552 QLSK~~sQ-----------------------------------------------------------------------~  560 (733)
T KOG0650|consen  552 QLSKRKSQ-----------------------------------------------------------------------S  560 (733)
T ss_pred             eccccccc-----------------------------------------------------------------------C
Confidence            65432100                                                                       0


Q ss_pred             cceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEE
Q 013545          299 RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFD  377 (441)
Q Consensus       299 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd  377 (441)
                      .+.-..+.|.++.|+|...+|..++.. .||+||+..+.......    ........+++.+.|..+++++. ..+--+|
T Consensus       561 PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~----tg~kwiS~msihp~GDnli~gs~d~k~~WfD  635 (733)
T KOG0650|consen  561 PFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL----TGSKWISSMSIHPNGDNLILGSYDKKMCWFD  635 (733)
T ss_pred             chhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh----cCCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence            011123558889999999998887754 69999998753211100    01122345677888887777765 4566667


Q ss_pred             cc-CCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          378 IW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       378 ~~-~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      +. +.+..++++-|.+.|.+|+|++.-.+++||+.|+++.|+-
T Consensus       636 ldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  636 LDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             cccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            73 3467789999999999999999999999999999999984

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.9e-16  Score=144.38  Aligned_cols=168  Identities=23%  Similarity=0.365  Sum_probs=123.2

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...++||+|.|+||.|+ .+|.+|+|||.|-.+.|||....+.            +..+    ..||+..|.++.|.|..
T Consensus        43 E~eL~GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~Kl------------lhsI----~TgHtaNIFsvKFvP~t  105 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKL------------LHSI----STGHTANIFSVKFVPYT  105 (758)
T ss_pred             hhhhccccceecceeec-CCCCEEeecCCcceEEeecchhcce------------eeee----ecccccceeEEeeeccC
Confidence            34678999999999998 5788999999999999999863321            1122    23899999999998865


Q ss_pred             C-CEEEEEeCCCcEEEEECCCCe----------EEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-
Q 013545          116 T-GLFVTGSYDHYVKVWDTNCTR----------VVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-  182 (441)
Q Consensus       116 ~-~~l~sgs~D~~i~iWd~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-  182 (441)
                      + .+++||+.|..|+++|+..-+          ....+.+ ...+-.++..+.++  ..+-+++.||.|+-+|+..... 
T Consensus       106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c  183 (758)
T KOG1310|consen  106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVC  183 (758)
T ss_pred             CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccC
Confidence            4 467899999999999987421          1111111 12344455555443  5788999999999999976321 


Q ss_pred             ---------eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          183 ---------SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       183 ---------~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                               +..+.+..-...|++.+|..+++|+.|+.|--.|+||.|.
T Consensus       184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence                     1112233345679999999999999999999999999763

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=3.9e-14  Score=126.62  Aligned_cols=242  Identities=17%  Similarity=0.246  Sum_probs=166.1

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      ...++.+.|+ .+...|..|+.||. ++|+.......-.   .              ..-...|..+.|+.   .++|-.
T Consensus         5 ~~ti~~~~~N-qd~~~lsvGs~~Gy-k~~~~~~~~k~~~---~--------------~~~~~~IvEmLFSS---SLvaiV   62 (391)
T KOG2110|consen    5 KPTINFIGFN-QDSTLLSVGSKDGY-KIFSCSPFEKCFS---K--------------DTEGVSIVEMLFSS---SLVAIV   62 (391)
T ss_pred             Ccceeeeeec-cceeEEEccCCCce-eEEecCchHHhhc---c--------------cCCCeEEEEeeccc---ceeEEE
Confidence            3567777787 45667777888775 7888764432100   0              00111233445543   366655


Q ss_pred             eCCC--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec---CCCCCeEEEE
Q 013545          123 SYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---GHRDGIMTVE  197 (441)
Q Consensus       123 s~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~---~h~~~v~~v~  197 (441)
                      +.+.  .+++.+++.+..+..+.++..+.++.+..     ..|+++-. ..|+|||+++-+++.++.   .+...+.+++
T Consensus        63 ~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr-----~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS  136 (391)
T KOG2110|consen   63 SIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR-----KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALS  136 (391)
T ss_pred             ecCCCceEEEEEcccCceEEEEecCCceEEEEEcc-----ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeec
Confidence            5554  49999999988888888888888777664     24555544 459999999999888765   4566677777


Q ss_pred             EecCCCcEEEEeec-CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          198 WSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       198 fsp~~~~~l~s~s~-Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      +++.+-++..=++. .|.|.+||+.+......                                                
T Consensus       137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~------------------------------------------------  168 (391)
T KOG2110|consen  137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNT------------------------------------------------  168 (391)
T ss_pred             cCCCCceEEecCCCCCceEEEEEcccceeeeE------------------------------------------------
Confidence            77766565444444 48999999865322111                                                


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCc-EEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~  355 (441)
                                             ..+|.+++.+|+|+++|++|||+|..|| ||++.+..++..    ...+.       
T Consensus       169 -----------------------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl----~eFRR-------  214 (391)
T KOG2110|consen  169 -----------------------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL----YEFRR-------  214 (391)
T ss_pred             -----------------------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe----eeeeC-------
Confidence                                   2479999999999999999999999998 688888776531    11110       


Q ss_pred             EEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          356 LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                                               |-.       .-.|.+++|+||+++|+..|.-+||.|+.++.-...
T Consensus       215 -------------------------G~~-------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~  253 (391)
T KOG2110|consen  215 -------------------------GTY-------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNN  253 (391)
T ss_pred             -------------------------Cce-------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccC
Confidence                                     000       123889999999999999999999999998765533

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.69  E-value=3.6e-15  Score=146.08  Aligned_cols=254  Identities=17%  Similarity=0.208  Sum_probs=173.7

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-CCCEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLFVT  121 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~l~s  121 (441)
                      ...|.|+.|+|.+..+|+.|..+|.|.+||+..+.....     ..      .......|..++..+.|... .+.-|+|
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-----s~------ls~~~~sh~~~v~~vvW~~~~~~~~f~s  310 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-----SG------LSALEVSHSEPVTAVVWLQNEHNTEFFS  310 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-----cc------cccccccCCcCeEEEEEeccCCCCceEE
Confidence            478999999998889999999999999999976543110     00      01123468889998888542 1245999


Q ss_pred             EeCCCcEEEEECCCCeE------EEEEe-------cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-------
Q 013545          122 GSYDHYVKVWDTNCTRV------VMNFK-------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-------  181 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-------  181 (441)
                      +|.||.|..|+++.-..      .....       ....+..+.|.+..  ...+..|+..|.|..-+.....       
T Consensus       311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~--p~~FiVGTe~G~v~~~~r~g~~~~~~~~~  388 (555)
T KOG1587|consen  311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD--PNHFIVGTEEGKVYKGCRKGYTPAPEVSY  388 (555)
T ss_pred             EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC--CceEEEEcCCcEEEEEeccCCcccccccc
Confidence            99999999998753221      11111       11224455555543  3468889999999875443322       


Q ss_pred             -eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          182 -ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       182 -~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                       ....+..|.+.|.++.++|-+..+|.|++ |-+|+||.... ...                +.                
T Consensus       389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P----------------l~----------------  435 (555)
T KOG1587|consen  389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP----------------LL----------------  435 (555)
T ss_pred             cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc----------------ch----------------
Confidence             12355678999999999999887777776 99999997541 100                00                


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCc
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                                             ....+...|++++|||... .++++..||.|.+||+.....
T Consensus       436 ---------------------------------------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  436 ---------------------------------------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             ---------------------------------------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence                                                   0112345699999999875 577888899999999975321


Q ss_pred             eeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                      .             |+                              .+..-+....+.+.|++.|+.|+.|...|+|.+|
T Consensus       477 ~-------------Pv------------------------------~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  477 E-------------PV------------------------------LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             C-------------Cc------------------------------ccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence            1             10                              0001123446788899999999999999999999


Q ss_pred             CCCCCC
Q 013545          419 CPSRHI  424 (441)
Q Consensus       419 ~~~~~~  424 (441)
                      +++...
T Consensus       514 ~l~~~l  519 (555)
T KOG1587|consen  514 KLSESL  519 (555)
T ss_pred             EcCchh
Confidence            997544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.67  E-value=2e-15  Score=138.07  Aligned_cols=208  Identities=24%  Similarity=0.315  Sum_probs=151.5

Q ss_pred             cCcccceeEEEEeeCCC-CEEEEEeCCCcEEEEECCCCeE----EEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545          100 HGHKYAISSAIWYPVDT-GLFVTGSYDHYVKVWDTNCTRV----VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~-~~l~sgs~D~~i~iWd~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      +-|...|.++.|+|... .++|+|..-|+|=+||+.+.+.    +..+ .+.++|..+.|+|...  ..+.+.|.||+|+
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--SQIYSSSYDGTIR  260 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--hheeeeccCceee
Confidence            35778899999999766 7889999999999999953221    1222 3456788888988654  3566788999999


Q ss_pred             EEECCCCceeeeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          174 LCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       174 vwdl~~~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      +-|++++..-..+.  .-.....++.|+.+...+ +.+..=|-..+||+|+++.-.                        
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~v-l~~~~~G~f~~iD~R~~~s~~------------------------  315 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSV-LFGDNVGNFNVIDLRTDGSEY------------------------  315 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeeccccCCCccE-EEeecccceEEEEeecCCccc------------------------
Confidence            99999876433333  344556778888877655 455555689999998653100                        


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEE
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRL  330 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~  330 (441)
                                                                    -...-|...|++|+++|... +|||+|.|++++|
T Consensus       316 ----------------------------------------------~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI  349 (498)
T KOG4328|consen  316 ----------------------------------------------ENLRLHKKKITSVALNPVCPWFLATASLDQTAKI  349 (498)
T ss_pred             ----------------------------------------------hhhhhhhcccceeecCCCCchheeecccCcceee
Confidence                                                          00123555799999999764 6899999999999


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s  410 (441)
                      ||++......          + |                              ......|...|.+..|||++..|+|.+
T Consensus       350 WD~R~l~~K~----------s-p------------------------------~lst~~HrrsV~sAyFSPs~gtl~TT~  388 (498)
T KOG4328|consen  350 WDLRQLRGKA----------S-P------------------------------FLSTLPHRRSVNSAYFSPSGGTLLTTC  388 (498)
T ss_pred             eehhhhcCCC----------C-c------------------------------ceecccccceeeeeEEcCCCCceEeec
Confidence            9998643210          0 0                              011134899999999999999999999


Q ss_pred             cCCcEEEeCCC
Q 013545          411 NDRQILVWCPS  421 (441)
Q Consensus       411 ~D~~i~vW~~~  421 (441)
                      .|..|||||.+
T Consensus       389 ~D~~IRv~dss  399 (498)
T KOG4328|consen  389 QDNEIRVFDSS  399 (498)
T ss_pred             cCCceEEeecc
Confidence            99999999984

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.66  E-value=5.1e-16  Score=151.20  Aligned_cols=274  Identities=18%  Similarity=0.306  Sum_probs=185.7

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +.||..+|+|..|+. .+.+++||+.|.-++||..+++.+.                 ..-.||.+.|+.++.+. +.-+
T Consensus       186 LlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~l-----------------As~rGhs~ditdlavs~-~n~~  246 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCL-----------------ASCRGHSGDITDLAVSS-NNTM  246 (1113)
T ss_pred             HHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhh-----------------ccCCCCccccchhccch-hhhh
Confidence            568999999999985 5889999999999999997766542                 12358999999999876 4668


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee---ec-CCCCCe
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LS-GHRDGI  193 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~---l~-~h~~~v  193 (441)
                      +|++|.|..||+|.+.++.++..+. +.|.+.+++|+|..       +.+.||++++||..--..+..   ++ .-.+-+
T Consensus       247 iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~  319 (1113)
T KOG0644|consen  247 IAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLV  319 (1113)
T ss_pred             hhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccce
Confidence            9999999999999999998876554 57889999999964       567899999999861111111   11 123556


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .++.|...+.. ++|++.|+.-+.|.+....+                                                
T Consensus       320 ~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~------------------------------------------------  350 (1113)
T KOG0644|consen  320 DSILFENNGDR-FLTGSRDGEARNHEFEQLAW------------------------------------------------  350 (1113)
T ss_pred             eeeeccccccc-cccccCCcccccchhhHhhh------------------------------------------------
Confidence            77778777764 68999999988887642110                                                


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                                   |...+.-+.++.| ..+.+++-.+-++++|++.++...    +....+...
T Consensus       351 -----------------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~----H~l~ghsd~  397 (1113)
T KOG0644|consen  351 -----------------------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL----HNLMGHSDE  397 (1113)
T ss_pred             -----------------------------hccceEEEeccccccccceeeeeeeEeeeeecccchhh----hhhcccccc
Confidence                                         0000111111111 246667777888999998877421    111111222


Q ss_pred             ceEEEeeC-CCcEEEEeC-CCceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          353 PIQLATTQ-DPAVVFVPC-MTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       353 ~~~~~~~~-~~~~~~~~~-~~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ...+-+.| ++.+...++ .+..-+||+|.|...+.+ .|| ..+.+.+||+||+.++-...-|.+.|...-
T Consensus       398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccC
Confidence            22233333 222333333 257889999999876644 454 557888999999998876666777776543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1e-13  Score=136.56  Aligned_cols=303  Identities=17%  Similarity=0.229  Sum_probs=194.9

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCC--CcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQR--ATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      -|.-.+++.+++| +++++|+|..||.|.+|.--.  +..+.               ...++=|...|.++.|++ +|.+
T Consensus       203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t---------------~t~lHWH~~~V~~L~fS~-~G~~  265 (792)
T KOG1963|consen  203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSET---------------CTLLHWHHDEVNSLSFSS-DGAY  265 (792)
T ss_pred             hhcccceeEEecc-ccceEEEeccCCcEEEEecccccccccc---------------ceEEEecccccceeEEec-CCce
Confidence            3666789999997 588999999999999996432  21110               011234778999999987 7999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC----------
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG----------  188 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~----------  188 (441)
                      |+|||+.+.+-+|.+.+++.-..-.+.+++..+.+++++.   +.+....|+.|.+-...+-+...++.|          
T Consensus       266 LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~---~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~  342 (792)
T KOG1963|consen  266 LLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD---LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT  342 (792)
T ss_pred             EeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC---eEEEEecCceEEEEeccchhhhhhccCccCCCccccc
Confidence            9999999999999999988433335678899999998653   566677899999998766544333332          


Q ss_pred             -CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545          189 -HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN  267 (441)
Q Consensus       189 -h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (441)
                       ..+-.+.+.++|.-+ .++=.+..|.|++||+-+...+..++......                               
T Consensus       343 ~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~-------------------------------  390 (792)
T KOG1963|consen  343 RPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY-------------------------------  390 (792)
T ss_pred             cccccceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecc-------------------------------
Confidence             244467888998433 35667889999999987655443322100000                               


Q ss_pred             CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec--------CC--cEEEeeCCCCC
Q 013545          268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS--------DS--RIRLWDVESGR  337 (441)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--------D~--~i~~wd~~~~~  337 (441)
                                            ..+       ...+...+++++.+.+|.+++|+-.        |+  .+|+|-.....
T Consensus       391 ----------------------~~~-------~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~  441 (792)
T KOG1963|consen  391 ----------------------SDG-------DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS  441 (792)
T ss_pred             ----------------------cCC-------cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence                                  000       0012345777888888888877532        32  57788766543


Q ss_pred             ceeeeeeeEEecc--CcceEEEe-eCCCc-EEEEe-CCCceEEEEccC----------CceEeeecccccceEEEEEcCC
Q 013545          338 NTLVNFETVRLQT--SKPIQLAT-TQDPA-VVFVP-CMTAVKAFDIWS----------GKTCLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       338 ~~~~~~~~~~~~~--~~~~~~~~-~~~~~-~~~~~-~~~~~~~wd~~~----------~~~~~~l~gh~~~v~~v~fspd  402 (441)
                      .... +.+....+  ...+..++ .+... ..+++ .++.+++|-...          +.+...-.-|..++..++||.|
T Consensus       442 kt~~-L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  442 KTFI-LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD  520 (792)
T ss_pred             ceeE-EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence            3221 22222222  11122222 22221 33344 557899997622          1222222238999999999999


Q ss_pred             CCeEEEeecCCcEEEeCCCC-CCCC
Q 013545          403 DQELYTGGNDRQILVWCPSR-HISD  426 (441)
Q Consensus       403 ~~~l~s~s~D~~i~vW~~~~-~~~~  426 (441)
                      | .++++|.|++|.+||..+ ..+.
T Consensus       521 G-slla~s~~~~Itiwd~~~~~~l~  544 (792)
T KOG1963|consen  521 G-SLLAVSFDDTITIWDYDTKNELL  544 (792)
T ss_pred             C-cEEEEecCCEEEEecCCChhhhh
Confidence            9 566688899999999988 4433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.65  E-value=3.5e-15  Score=129.14  Aligned_cols=228  Identities=21%  Similarity=0.324  Sum_probs=157.4

Q ss_pred             EecCCeeEEEeeccCCC--CccEEEEEeCCCcEEEEECCC--Cce--eee-----ecCCCCCeEEEEEecCCCcEEEEee
Q 013545          142 FKMPGKVYRTAMSPLAA--SHMLIAAGTEDVQVRLCDIAS--GAI--SQT-----LSGHRDGIMTVEWSTSSEWILVTGG  210 (441)
Q Consensus       142 ~~~~~~~~~~~~~~~~~--~~~~las~s~d~~I~vwdl~~--~~~--~~~-----l~~h~~~v~~v~fsp~~~~~l~s~s  210 (441)
                      +.++-++..+.|.|+..  ...+||+++  ..+|+|.+..  ++.  ...     -..+.+++++..|+.-...++.++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            34555666777777653  235677654  4799999874  221  111     2356788999999877777889999


Q ss_pred             cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccC
Q 013545          211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH  290 (441)
Q Consensus       211 ~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (441)
                      -|-+..|||+.++...                                                         .      
T Consensus       171 iDTTCTiWdie~~~~~---------------------------------------------------------~------  187 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSG---------------------------------------------------------T------  187 (364)
T ss_pred             ccCeEEEEEEeecccc---------------------------------------------------------c------
Confidence            9999999999764100                                                         0      


Q ss_pred             CCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee-CCCcEEEEe
Q 013545          291 PGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT-QDPAVVFVP  368 (441)
Q Consensus       291 ~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  368 (441)
                           ....+.+|..+|..|+|..++. .+||.|+||.||+||++........++.-. ......+++.. .|..++++-
T Consensus       188 -----vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-~~~pLlRLswnkqDpnymATf  261 (364)
T KOG0290|consen  188 -----VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-PSTPLLRLSWNKQDPNYMATF  261 (364)
T ss_pred             -----eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-CCCcceeeccCcCCchHHhhh
Confidence                 0012457999999999999764 689999999999999987653322222100 01222344444 345555443


Q ss_pred             CC--CceEEEEccC-CceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCCCCC-------CccCCccCCcC
Q 013545          369 CM--TAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHISD-------GVDAGPMQDQD  437 (441)
Q Consensus       369 ~~--~~~~~wd~~~-~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~~~~-------~~~~~~~~~~~  437 (441)
                      ..  ..|.+.|+.. ...+.+|++|.+.|+.++|.|.. ..|+|||.|..+.+||++.--..       --.+|-+.+|.
T Consensus       262 ~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi  341 (364)
T KOG0290|consen  262 AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQI  341 (364)
T ss_pred             hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeee
Confidence            33  4788899865 45678999999999999999974 56999999999999999854441       12267788888


Q ss_pred             CCC
Q 013545          438 NWS  440 (441)
Q Consensus       438 ~~~  440 (441)
                      .|+
T Consensus       342 ~Ws  344 (364)
T KOG0290|consen  342 QWS  344 (364)
T ss_pred             eec
Confidence            886

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=2.3e-15  Score=141.16  Aligned_cols=213  Identities=19%  Similarity=0.257  Sum_probs=139.0

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +.+|.++|.|+++. .+++++.||+-||+|+.|++...-.........       +...+..||+++|+.+++++ ..++
T Consensus       340 fraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~-------vl~~~l~Ghtdavw~l~~s~-~~~~  410 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS-------VLSGTLLGHTDAVWLLALSS-TKDR  410 (577)
T ss_pred             EecccCceEEEEec-CCceEEEeeccCceeeeeccCCCCCcccccCcc-------hhccceeccccceeeeeecc-cccc
Confidence            45999999999996 578899999999999999875221111000000       01234569999999999987 5678


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC------
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH------  189 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h------  189 (441)
                      |++|+.|+|+|+|+.....+ .+|..   .+....+.+..... ...+++ ..-+.-.+.+.+.+...+.+...      
T Consensus       411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~-a~~~~s-~~~~~~~~~~~ev~s~~~~~~s~~~~~~~  487 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRP-AHSLAS-FRFGYTSIDDMEVVSDLLIFESSASPGPR  487 (577)
T ss_pred             eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchh-Hhhhhh-cccccccchhhhhhhheeeccccCCCccc
Confidence            99999999999999876555 22322   12222222222110 011111 11122223333444333333211      


Q ss_pred             -CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          190 -RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       190 -~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                       ...+.-+..+|... +.+++..|++|+++|..+++.+.                                         
T Consensus       488 ~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~-----------------------------------------  525 (577)
T KOG0642|consen  488 RYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILH-----------------------------------------  525 (577)
T ss_pred             ccCccceEEecCCCC-eeEecccCCceecccccccccch-----------------------------------------
Confidence             13355677788876 67899999999999987653211                                         


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                                    ...+|...|+++++.|+|.+|++++.|+++++|.+..
T Consensus       526 ------------------------------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  526 ------------------------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ------------------------------heeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence                                          0236778899999999999999999999999998754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.3e-14  Score=125.48  Aligned_cols=198  Identities=16%  Similarity=0.160  Sum_probs=137.8

Q ss_pred             eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceee
Q 013545          148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR  227 (441)
Q Consensus       148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~  227 (441)
                      ..++.|++.+   .+||+|+.||.|-+||+.|....+.+.+|.-+|++++||++|+ .|+|+|.|..|++||+..+.++.
T Consensus        26 a~~~~Fs~~G---~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWG---DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCc---ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCCcee
Confidence            4566777765   4899999999999999999998899999999999999999997 57899999999999999876543


Q ss_pred             EeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCe
Q 013545          228 VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV  307 (441)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  307 (441)
                      .+.                                                                        ..++|
T Consensus       102 rir------------------------------------------------------------------------f~spv  109 (405)
T KOG1273|consen  102 RIR------------------------------------------------------------------------FDSPV  109 (405)
T ss_pred             EEE------------------------------------------------------------------------ccCcc
Confidence            321                                                                        12345


Q ss_pred             EEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEe
Q 013545          308 TGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL  385 (441)
Q Consensus       308 ~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~  385 (441)
                      +.+.|+|-.. ..++.=-+..-.+-++...+........-.-....+....+.+.|.+++++.. +.+.++|..+.+++.
T Consensus       110 ~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va  189 (405)
T KOG1273|consen  110 WGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA  189 (405)
T ss_pred             ceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeee
Confidence            5556665332 12222222223333333221110000000000001111235677888888876 578899999998888


Q ss_pred             eecccc-cceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          386 TFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       386 ~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      .++--. ..|..+.|+..|+.|+.-..|+.||.++++
T Consensus       190 s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  190 SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             eeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            777555 678999999999999999999999999886

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=1.1e-13  Score=140.37  Aligned_cols=170  Identities=18%  Similarity=0.252  Sum_probs=113.8

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .|.+.|+.++.++..+.+++|||.||+||+||+.+...     +....++...-.     --...+.++...+ .++.+|
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~-----~~~s~rS~ltys-----~~~sr~~~vt~~~-~~~~~A 1114 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG-----EGGSARSELTYS-----PEGSRVEKVTMCG-NGDQFA 1114 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhc-----CcceeeeeEEEe-----ccCCceEEEEecc-CCCeEE
Confidence            47889999999876668999999999999999875432     111111111110     0112344444443 578999


Q ss_pred             EEeCCCcEEEEECCCCe-------EEEEE--ecCCeeEEE-eeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec--C
Q 013545          121 TGSYDHYVKVWDTNCTR-------VVMNF--KMPGKVYRT-AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--G  188 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~-------~~~~~--~~~~~~~~~-~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~--~  188 (441)
                      .++.||.|++.++.-..       +....  ...|.+.+. ++.....+ ..++.+...+.|..||+.+...+.+++  -
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            99999999999886411       11111  123333332 23332333 477788888999999998876665554  3


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~  223 (441)
                      ..+.|+++..+|.+.| +++|...|.+-+||+|-+
T Consensus      1194 ~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             cccceeEEEecCCceE-EEEecCCceEEEEEeecC
Confidence            4577999999999886 689999999999999843

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=3.2e-14  Score=130.37  Aligned_cols=245  Identities=13%  Similarity=0.165  Sum_probs=157.0

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCEEEEE
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~sg  122 (441)
                      .+|.+++|.|.+...+++++.-.-+..||+.+.+.....       +        .+|+. ..+..-.+++ +++++|..
T Consensus       258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~-------~--------~~g~e~~~~e~FeVSh-d~~fia~~  321 (514)
T KOG2055|consen  258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK-------P--------PYGVEEKSMERFEVSH-DSNFIAIA  321 (514)
T ss_pred             CccceeeecCCCceEEEecccceEEEEeecccccccccc-------C--------CCCcccchhheeEecC-CCCeEEEc
Confidence            588899999754448999999999999999876542211       1        11222 1122233344 78899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC-CeEEEEEecC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-GIMTVEWSTS  201 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~-~v~~v~fsp~  201 (441)
                      |..|-|.+--..+++.+..++++|.+..+.|+.++  . .|.+++.+|.|.+||++...+++.+....+ --++++.+++
T Consensus       322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds--k-~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n  398 (514)
T KOG2055|consen  322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS--K-ELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN  398 (514)
T ss_pred             ccCceEEeehhhhhhhhheeeeccEEeeEEEecCC--c-EEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence            99999999999999999999999999999999664  3 455556688999999999988887764322 1256777788


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      +. +||+||..|-|.|||..+.  +.         ...|.+....+.               .....+.+.+.++..+.+
T Consensus       399 g~-ylA~GS~~GiVNIYd~~s~--~~---------s~~PkPik~~dN---------------Ltt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  399 GS-YLATGSDSGIVNIYDGNSC--FA---------STNPKPIKTVDN---------------LTTAITSLQFNHDAQILA  451 (514)
T ss_pred             Cc-eEEeccCcceEEEeccchh--hc---------cCCCCchhhhhh---------------hheeeeeeeeCcchhhhh
Confidence            87 5799999999999996542  11         001111110000               001112223333333322


Q ss_pred             CCCccc-----ccCCCccccccc---ceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          282 KGSVRQ-----RLHPGMLSSQDR---ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       282 ~~~~~~-----~~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                      ..+-..     .++-...+....   .....+.|+||+|||.|.++|.|..+|++.+|.+.
T Consensus       452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            211110     011000000000   01223569999999999999999999999999764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=4.4e-14  Score=138.69  Aligned_cols=236  Identities=17%  Similarity=0.188  Sum_probs=156.4

Q ss_pred             CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEE
Q 013545           65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMN  141 (441)
Q Consensus        65 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~  141 (441)
                      +..|.|||......                  +....|...+....|+| |+++|+.++.+   .+|.+||+.+++....
T Consensus       183 ~~~i~i~d~dg~~~------------------~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l  243 (429)
T PRK01742        183 PYEVRVADYDGFNQ------------------FIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVV  243 (429)
T ss_pred             eEEEEEECCCCCCc------------------eEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence            57899999753321                  01124666788888987 78888887764   3699999988765333


Q ss_pred             EecCCeeEEEeeccCCCCccEEEEEeCCCcEE--EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545          142 FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR--LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (441)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~--vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD  219 (441)
                      ....+......++|++.  .++.+.+.++.+.  +||+.+++. ..+..+...+.+..|+|+++.+++++..++..+||+
T Consensus       244 ~~~~g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~  320 (429)
T PRK01742        244 ASFRGHNGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR  320 (429)
T ss_pred             ecCCCccCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence            33444455677887643  3444445677655  457766654 556677778889999999987666666788999998


Q ss_pred             cCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccccc
Q 013545          220 IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR  299 (441)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (441)
                      +........                                                                       
T Consensus       321 ~~~~~~~~~-----------------------------------------------------------------------  329 (429)
T PRK01742        321 MSASGGGAS-----------------------------------------------------------------------  329 (429)
T ss_pred             EECCCCCeE-----------------------------------------------------------------------
Confidence            753210000                                                                       


Q ss_pred             ceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEc
Q 013545          300 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDI  378 (441)
Q Consensus       300 ~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~  378 (441)
                      ...+.+  ..++|+|||++|+..+.++ +.+||+.+++..... .  .   .......++|++..++..+ .+..++|++
T Consensus       330 ~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~--~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        330 LVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-S--T---FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             EecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-C--C---CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            001111  2357999999998887765 666999887532110 1  1   1112456899998877654 466777876


Q ss_pred             c--CCceEeeecccccceEEEEEcCC
Q 013545          379 W--SGKTCLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       379 ~--~~~~~~~l~gh~~~v~~v~fspd  402 (441)
                      .  +|+....+.+|.+.+..++|||-
T Consensus       401 ~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        401 VSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EECCCCceEEccCCCCCCCCcccCCC
Confidence            4  58888899999999999999984

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.62  E-value=1.9e-14  Score=124.61  Aligned_cols=212  Identities=19%  Similarity=0.250  Sum_probs=153.6

Q ss_pred             CCCCceeEEEccCCCC----cEEEEeeCCCcEEEEECCCCc-ccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           41 PHKGSINSLQVDLTEE----RYLLSGASDSSVAVYDVQRAT-DYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~----~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      .|.-+++.+.|.|+..    ++|||.  +..+|+|.+...+ .......+..         .....+..++++..|...+
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~---------~kns~~~aPlTSFDWne~d  162 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNN---------NKNSEFCAPLTSFDWNEVD  162 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhcc---------CcccccCCcccccccccCC
Confidence            5788999999998642    345554  3579999986432 1111111111         1123466678888888888


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeE----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSG  188 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~  188 (441)
                      ..++.++|-|.|..|||++++..    .+.+-+...|+.++|...  +..++||.+.||++|+|||+.-+   .+..-..
T Consensus       163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~--s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~  240 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG--SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS  240 (364)
T ss_pred             cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC--ccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence            89999999999999999998732    233456778999999873  45689999999999999997654   2222222


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN  267 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (441)
                      ...+..-++|++....++|+-..| ..|.|-|+|....                                          
T Consensus       241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------------------------------------  278 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------------------------------------  278 (364)
T ss_pred             CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------------------------------------
Confidence            245677889998888788887766 5799999985310                                          


Q ss_pred             CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCC
Q 013545          268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~  335 (441)
                                                  ...++..|.+.|++++|.|.. ..|+|++.|..+-+||+..
T Consensus       279 ----------------------------pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  279 ----------------------------PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ----------------------------ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence                                        011345799999999999985 5799999999999999975

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.6e-14  Score=131.20  Aligned_cols=197  Identities=22%  Similarity=0.299  Sum_probs=139.4

Q ss_pred             eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCC
Q 013545           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH  126 (441)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~  126 (441)
                      -+++|+. ++..|++|+.||++|||+.......                 .....|..+|.++.|+| |++.|+|-+.| 
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~-----------------l~e~~~~~eV~DL~FS~-dgk~lasig~d-  207 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTI-----------------LEEIAHHAEVKDLDFSP-DGKFLASIGAD-  207 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhh-----------------hhhHhhcCccccceeCC-CCcEEEEecCC-
Confidence            6788885 5678999999999999995433211                 11236888999999987 89999999999 


Q ss_pred             cEEEEECCCCeEEEEEecCCe---eEEEeeccCCCCccE--EEEEeCCCcEEEEECCCCce------eeeecCCCCCeEE
Q 013545          127 YVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHML--IAAGTEDVQVRLCDIASGAI------SQTLSGHRDGIMT  195 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--las~s~d~~I~vwdl~~~~~------~~~l~~h~~~v~~  195 (441)
                      ..+||++.++..+......++   ...+.|..+.....+  +++-..-+.|+.||+....-      .+.+.. ...|++
T Consensus       208 ~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSs  286 (398)
T KOG0771|consen  208 SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISS  286 (398)
T ss_pred             ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCccee
Confidence            999999999976655442222   223344444322232  33334455677777643221      111222 346899


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      ++.+++|+ +++-|+.||.|-|++..+-.++...                                              
T Consensus       287 l~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~v----------------------------------------------  319 (398)
T KOG0771|consen  287 LAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYV----------------------------------------------  319 (398)
T ss_pred             EEEcCCCc-EEEEeccCCcEEEEEeceeeeeEee----------------------------------------------
Confidence            99999998 5789999999999998653322211                                              


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                              ..+|...|+.|.|+||.+++++-+.|.+..+..+.-
T Consensus       320 ------------------------k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  320 ------------------------KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ------------------------hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence                                    246888999999999999999999999999887653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=3.9e-14  Score=132.37  Aligned_cols=124  Identities=22%  Similarity=0.420  Sum_probs=105.4

Q ss_pred             ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545           97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus        97 ~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~v  174 (441)
                      +.+.||++-|+|+.|.. +|.+|+|||+|..+.|||....++++.+..  ...++++.|.|... +.++++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-CeEEEeccCcceEEE
Confidence            34569999999999987 899999999999999999988888777653  45578888888754 567889999999999


Q ss_pred             EECCCC----------ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          175 CDIASG----------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       175 wdl~~~----------~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      +|+...          +....+..|...|.-++-.|+++..|.++++||+||-+|+|.
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            999752          234456789999999999999988899999999999999985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.54  E-value=7e-14  Score=132.72  Aligned_cols=217  Identities=17%  Similarity=0.252  Sum_probs=144.1

Q ss_pred             eCCCcEEEEECCCCeEEE-----EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-------eeeeecCCC
Q 013545          123 SYDHYVKVWDTNCTRVVM-----NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-------ISQTLSGHR  190 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-------~~~~l~~h~  190 (441)
                      |.-|.|-|++++..-.+-     .+.-..-+..+.|.|+.  ...||+++.|+.|++|.+..+-       +-..+.+|.
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD--~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~  677 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFD--DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG  677 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCC--hHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence            456899999987533221     11112236667777764  4679999999999999997652       345788999


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      ..|.++.|+|=-..+|++++-|.+|++||+++.+..                                            
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~--------------------------------------------  713 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY--------------------------------------------  713 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh--------------------------------------------
Confidence            999999999976567899999999999999864311                                            


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                 .++.+|.+-|.+++|||||+.+++-+.||+|++|+..++....  ++......
T Consensus       714 ---------------------------~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv--~Eg~gpvg  764 (1012)
T KOG1445|consen  714 ---------------------------SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV--YEGKGPVG  764 (1012)
T ss_pred             ---------------------------heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc--ccCCCCcc
Confidence                                       1245799999999999999999999999999999998765322  11111111


Q ss_pred             CcceEEEeeCCCcEEEEeCCC-----ceEEEEccCC--ceEeeecccccceEEEEE-------cCCCC-eEEEeecCCcE
Q 013545          351 SKPIQLATTQDPAVVFVPCMT-----AVKAFDIWSG--KTCLTFRGHYEYVNCCCF-------SSQDQ-ELYTGGNDRQI  415 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~-----~~~~wd~~~~--~~~~~l~gh~~~v~~v~f-------spd~~-~l~s~s~D~~i  415 (441)
                      .....+.+.-|+.++++.+..     .+.+||..+-  ..+.+.      +.+++-       .+|.. .++||--|..|
T Consensus       765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~------~lDvaps~LvP~YD~Ds~~lfltGKGD~~v  838 (1012)
T KOG1445|consen  765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ------VLDVAPSPLVPHYDYDSNVLFLTGKGDRFV  838 (1012)
T ss_pred             CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceee------eecccCccccccccCCCceEEEecCCCceE
Confidence            222345555677766665442     2444444221  111111      122221       23544 46688889999


Q ss_pred             EEeCC
Q 013545          416 LVWCP  420 (441)
Q Consensus       416 ~vW~~  420 (441)
                      ..+-+
T Consensus       839 ~~yEv  843 (1012)
T KOG1445|consen  839 NMYEV  843 (1012)
T ss_pred             EEEEe
Confidence            88854

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=7.7e-12  Score=123.54  Aligned_cols=297  Identities=16%  Similarity=0.137  Sum_probs=200.2

Q ss_pred             EEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC--CEEEEEeCCC
Q 013545           49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT--GLFVTGSYDH  126 (441)
Q Consensus        49 l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~~l~sgs~D~  126 (441)
                      -.|++ ++++++-. .+..|+||.+.++....                 ...+|...+..+.+.+...  .++.+++.||
T Consensus        22 avfSn-D~k~l~~~-~~~~V~VyS~~Tg~~i~-----------------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G   82 (792)
T KOG1963|consen   22 AVFSN-DAKFLFLC-TGNFVKVYSTATGECIT-----------------SLEDHTAPLTSVIVLPSSENANYLIVCSLDG   82 (792)
T ss_pred             ccccc-CCcEEEEe-eCCEEEEEecchHhhhh-----------------hcccccCccceeeecCCCccceEEEEEecCc
Confidence            45774 57766554 55789999998876421                 2347888888888866544  5778999999


Q ss_pred             cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEE-EEeCCC------------cEEEEECCCC--ceeeeecCCCC
Q 013545          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIA-AGTEDV------------QVRLCDIASG--AISQTLSGHRD  191 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-s~s~d~------------~I~vwdl~~~--~~~~~l~~h~~  191 (441)
                      +|++||-..+..+.++....++....+.+.......++ .+..|.            +++-+.+.+-  .....+.+|..
T Consensus        83 ~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~  162 (792)
T KOG1963|consen   83 TIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE  162 (792)
T ss_pred             cEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC
Confidence            99999999999999988877776665543211111122 222222            1122222111  11112233333


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                       -.++.+++.+..  ..--.+..+.+|+..+..  ....                                         
T Consensus       163 -~~~I~~~~~ge~--~~i~~~~~~~~~~v~~~~--~~~~-----------------------------------------  196 (792)
T KOG1963|consen  163 -PKSIVDNNSGEF--KGIVHMCKIHIYFVPKHT--KHTS-----------------------------------------  196 (792)
T ss_pred             -CccEEEcCCceE--EEEEEeeeEEEEEecccc--eeec-----------------------------------------
Confidence             467888888763  333456678888876432  0000                                         


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                              .......|.-.+++.++||+++++|+|..||+|.+|.=...+...........+..
T Consensus       197 ------------------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  197 ------------------------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD  252 (792)
T ss_pred             ------------------------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence                                    00111235556899999999999999999999999953331111122345677888


Q ss_pred             cceEEEeeCCCcEEEEeCCC-ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545          352 KPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~  430 (441)
                      ....++++.+|.++++++.. .+-+|.+.+++ .+-|.--.++|..+.+|||+.+.+..-+|..|.+=..++-.....+.
T Consensus       253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs  331 (792)
T KOG1963|consen  253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS  331 (792)
T ss_pred             ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence            89999999999999999885 56789998887 44455567889999999999999988889999999888777777777


Q ss_pred             CccCC
Q 013545          431 GPMQD  435 (441)
Q Consensus       431 ~~~~~  435 (441)
                      |....
T Consensus       332 gi~~~  336 (792)
T KOG1963|consen  332 GIKPP  336 (792)
T ss_pred             CccCC
Confidence            76544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=1.3e-12  Score=130.79  Aligned_cols=258  Identities=16%  Similarity=0.217  Sum_probs=157.9

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE-eeCCCCEEEEE
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-YPVDTGLFVTG  122 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~~~~~~~l~sg  122 (441)
                      ..-..+.|+|- ...++++.....|++||-+.++.+..-              .........|+.+.+ ...|..++++|
T Consensus      1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F--------------~n~~~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGF--------------DNGAFPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred             CCCceeeecCC-CceeEEcCCcceEEEEecccCceeccc--------------cCCCCCCCccceeeeecccchhheeee
Confidence            33445667753 557888887888999999877654210              011123345666665 34456789999


Q ss_pred             eCCCcEEEEEC-----CCCeEEEEEe-cCC----e-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCC
Q 013545          123 SYDHYVKVWDT-----NCTRVVMNFK-MPG----K-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHR  190 (441)
Q Consensus       123 s~D~~i~iWd~-----~~~~~~~~~~-~~~----~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~  190 (441)
                      +.||.||||+-     ...+.+.-+. +.+    . -..+.+.....+..++++| .-..|+|||.........+. +-.
T Consensus      1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred             ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCC
Confidence            99999999973     2223333222 111    0 0111122222234455544 46789999998877666654 344


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      .-|++++-+-....+++.|-.||+||+||.|....-..                                          
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~------------------------------------------ 1246 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL------------------------------------------ 1246 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCcccc------------------------------------------
Confidence            45666654433334788999999999999885311000                                          


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccC--eEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA--VTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVR  347 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~  347 (441)
                                                ......|...  |..+.+-+.|- .|++|+.||.|++||++....  ..+.++.
T Consensus      1247 --------------------------v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~~~~iv 1298 (1387)
T KOG1517|consen 1247 --------------------------VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ETFLTIV 1298 (1387)
T ss_pred             --------------------------ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cccceee
Confidence                                      0001234443  78888888765 499999999999999986311  0011100


Q ss_pred             eccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                                                .-|+            ..+.++++..+++...+|+|+. +.|+||+.....+.
T Consensus      1299 --------------------------~~~~------------yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1299 --------------------------AHWE------------YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred             --------------------------eccc------------cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc
Confidence                                      0010            0113788889999999999998 99999999766554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.53  E-value=1.1e-13  Score=129.01  Aligned_cols=264  Identities=17%  Similarity=0.220  Sum_probs=148.6

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccC------CCCccEEEEEeCCCcEEE
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL------AASHMLIAAGTEDVQVRL  174 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~las~s~d~~I~v  174 (441)
                      .|..-|.++.|.. ....+.+++++..++-||+.+.. ....+++........++.      +.....++.++.||.+.+
T Consensus        12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccc-cceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            3555677777775 34444444444444455554333 222333222111122222      122346778889999988


Q ss_pred             EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      .+- .++.-+.+..|.+.+.+-.|+|+|.. |+|+++||.|++|. |+|..-.++-+....      ..+....+...  
T Consensus        90 l~k-~~rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWS-rsGMLRStl~Q~~~~------v~c~~W~p~S~--  158 (737)
T KOG1524|consen   90 LNK-SARVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWS-RSGMLRSTVVQNEES------IRCARWAPNSN--  158 (737)
T ss_pred             ecc-cchhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEe-ccchHHHHHhhcCce------eEEEEECCCCC--
Confidence            874 45555678899999999999999986 68999999999997 444221111110000      00000000000  


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                             ......|..+.+-|             +.+  -....+..+|.+-|.+++|++....|+||+.|-+.++||-.
T Consensus       159 -------~vl~c~g~h~~IKp-------------L~~--n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  159 -------SIVFCQGGHISIKP-------------LAA--NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             -------ceEEecCCeEEEee-------------ccc--ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence                   00000000000000             000  01122467899999999999999999999999999999976


Q ss_pred             CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545          335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                      .. +.+   . -..+.-.+..+++.|+ +..++.+-.+.|           --+-..+.|..++|||||..++.|...|.
T Consensus       217 G~-~Lf---~-S~~~ey~ITSva~npd-~~~~v~S~nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~  279 (737)
T KOG1524|consen  217 GA-NLF---T-SAAEEYAITSVAFNPE-KDYLLWSYNTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQ  279 (737)
T ss_pred             Cc-ccc---c-CChhccceeeeeeccc-cceeeeeeeeee-----------ecCCCccceEEEEEcCCCceeeccccCce
Confidence            42 211   1 1112233456777777 333333223333           11234577999999999999998777766


Q ss_pred             EE
Q 013545          415 IL  416 (441)
Q Consensus       415 i~  416 (441)
                      +.
T Consensus       280 v~  281 (737)
T KOG1524|consen  280 LI  281 (737)
T ss_pred             EE
Confidence            43

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2.3e-13  Score=123.83  Aligned_cols=203  Identities=18%  Similarity=0.254  Sum_probs=141.9

Q ss_pred             eEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                      .++++.. ++..+++|+.|+++|+|+.-+... +....+++.+.++.|++++   .+|++-+.| ..+||+.++|..+..
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg---k~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG---KFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC---cEEEEecCC-ceEEEEeccCchhhh
Confidence            3455554 788999999999999999544443 3344567889999999975   378888888 999999999976665


Q ss_pred             ec--CCCCCeEEEEEecCC---Cc-EEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          186 LS--GHRDGIMTVEWSTSS---EW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       186 l~--~h~~~v~~v~fsp~~---~~-~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                      ..  +-......+.|+.++   .. ++++-..-+.|+.||+....--..+                              
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l------------------------------  272 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL------------------------------  272 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc------------------------------
Confidence            54  233445677887765   22 3333344467777776421000000                              


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  339 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~  339 (441)
                                              ...           . .......|.++++|+||++++-|+.||.|-+++..+.+..
T Consensus       273 ------------------------~~~-----------~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~  316 (398)
T KOG0771|consen  273 ------------------------RLR-----------K-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL  316 (398)
T ss_pred             ------------------------chh-----------h-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence                                    000           0 0111235899999999999999999999999988754311


Q ss_pred             eeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      .                                            ..-+.|..-|+.+.|+||.+++++.+.|.+++|-.
T Consensus       317 ~--------------------------------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  317 Q--------------------------------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             E--------------------------------------------eehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            0                                            11145888999999999999999999999999988


Q ss_pred             CCCCC
Q 013545          420 PSRHI  424 (441)
Q Consensus       420 ~~~~~  424 (441)
                      ++-..
T Consensus       353 l~vd~  357 (398)
T KOG0771|consen  353 LAVDK  357 (398)
T ss_pred             Eeecc
Confidence            87543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.3e-12  Score=128.35  Aligned_cols=210  Identities=15%  Similarity=0.085  Sum_probs=136.1

Q ss_pred             CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCce--eeeecCCCCCeEEEEEe
Q 013545          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAI--SQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~--~~~l~~h~~~v~~v~fs  199 (441)
                      +.+|.+||...............+....++|++.   .|+..+.   +..|++||+++++.  +..+.+|.   ..++|+
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~---~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGS---KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCC---EEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeEC
Confidence            5789999986554322223345577788888753   4454443   24699999998864  33344443   468999


Q ss_pred             cCCCcEEEEeecCCcEEEEEcC--CCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      |+++.++++.+.+|.++||.+.  .+.. ..                                                 
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~-------------------------------------------------  286 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQ-------------------------------------------------  286 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCe-Ee-------------------------------------------------
Confidence            9998765555678888877543  2110 00                                                 


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                            ...+...+.+.+|+|||+.|+..+ .++..+||++..........     .... ...
T Consensus       287 ----------------------lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-----~~~~-~~~  338 (429)
T PRK01742        287 ----------------------LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-----GGRG-YSA  338 (429)
T ss_pred             ----------------------eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----cCCC-CCc
Confidence                                  011223456789999999877554 67888888765322111111     1111 235


Q ss_pred             EeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          357 ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      .++|++..++..+...+..||+.+++.......+  ....+.|+|||++|+.++.++.+++|.+
T Consensus       339 ~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        339 QISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             cCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            6889999887776677777999888764333332  2467889999999999999998887764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.52  E-value=1e-11  Score=118.06  Aligned_cols=232  Identities=14%  Similarity=0.224  Sum_probs=146.6

Q ss_pred             EEEEeCCCcEEEEECCC-Ce--EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-CCce--eeeecCCCCC
Q 013545          119 FVTGSYDHYVKVWDTNC-TR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAI--SQTLSGHRDG  192 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-~~~~--~~~l~~h~~~  192 (441)
                      +++.+.|+.|.+||+.+ ++  .+..+...+....+.++|+.  ..+.+++..++.|.+|++. +++.  +.... ..+.
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~--~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~   81 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDK--RHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS   81 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCC--CEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence            44557899999999964 33  44555554556667777754  2344445568899999996 3433  22222 2345


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee-eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF-RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      ...+.|+|+++.++++.-.++.|.+||+...+.. ...                                          
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~------------------------------------------  119 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI------------------------------------------  119 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce------------------------------------------
Confidence            6789999999976666556899999998632100 000                                          


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceee-eeeeEEe-
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLV-NFETVRL-  348 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~-~~~~~~~-  348 (441)
                                     .            ...+......++++|+|+++. +...+++|.+||+.+...... ....... 
T Consensus       120 ---------------~------------~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~  172 (330)
T PRK11028        120 ---------------Q------------IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV  172 (330)
T ss_pred             ---------------e------------eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence                           0            000011245678999999874 556679999999976321100 0001111 


Q ss_pred             ccCcceEEEeeCCCcEEEEeCC--CceEEEEccC--Cc--eEeeeccc------ccceEEEEEcCCCCeEEEeec-CCcE
Q 013545          349 QTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS--GK--TCLTFRGH------YEYVNCCCFSSQDQELYTGGN-DRQI  415 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~--~~--~~~~l~gh------~~~v~~v~fspd~~~l~s~s~-D~~i  415 (441)
                      ....+..+++++++.++++...  ..+.+|++..  ++  ...++..+      ......++|+|||++|+++.. +++|
T Consensus       173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I  252 (330)
T PRK11028        173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI  252 (330)
T ss_pred             CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence            1244667889999999988754  6899999973  33  23333322      223457999999999998754 7899


Q ss_pred             EEeCCCC
Q 013545          416 LVWCPSR  422 (441)
Q Consensus       416 ~vW~~~~  422 (441)
                      .+|+++.
T Consensus       253 ~v~~i~~  259 (330)
T PRK11028        253 SVFSVSE  259 (330)
T ss_pred             EEEEEeC
Confidence            9998854

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.52  E-value=1.5e-13  Score=124.20  Aligned_cols=157  Identities=24%  Similarity=0.391  Sum_probs=120.0

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-------EEE--EEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-------VVM--NFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-------~~~--~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~v  174 (441)
                      +|..+.+...+.+.+|||+.|..||+|-+....       +..  .+. +...++.+.|++.+   .+||||+.++.|.+
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g---elLASg~D~g~v~l   91 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG---ELLASGGDGGEVFL   91 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc---CeeeecCCCceEEE
Confidence            566777766555599999999999999875432       111  111 23457777777754   48999999999999


Q ss_pred             EECC--------C-----C---ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccC
Q 013545          175 CDIA--------S-----G---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR  238 (441)
Q Consensus       175 wdl~--------~-----~---~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~  238 (441)
                      |-..        +     .   ...+.+.+|...|..++|+|++. ++++++.|+++++||++.+.....          
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~----------  160 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAI----------  160 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEee----------
Confidence            9876        3     1   23457889999999999999987 579999999999999987643322          


Q ss_pred             CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE
Q 013545          239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY  318 (441)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  318 (441)
                                                                                   ...|...|..++|.|-+++
T Consensus       161 -------------------------------------------------------------~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  161 -------------------------------------------------------------LDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             -------------------------------------------------------------ccccccccceeecchhhhh
Confidence                                                                         2246677889999999999


Q ss_pred             EEEeecCCcEEEeeCCCC
Q 013545          319 LLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       319 l~sgs~D~~i~~wd~~~~  336 (441)
                      +++=+.|+..+.+.+...
T Consensus       180 v~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  180 VASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             hhhhccCcccceeeeeee
Confidence            999999997777776543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.51  E-value=9.5e-13  Score=112.78  Aligned_cols=216  Identities=16%  Similarity=0.206  Sum_probs=141.4

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC----CCCceeccce-----------eEE------------
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE----GGGHIAKHRS-----------VFV------------   93 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~----~~~~~~~~~~-----------~~~------------   93 (441)
                      -|...|+.+..-| + +.|.|-+.|..+.+|++.......    ..+++...+.           ..+            
T Consensus        54 ~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~  131 (323)
T KOG0322|consen   54 FGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQ  131 (323)
T ss_pred             hccceeeceeecC-C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhh
Confidence            4567899999875 3 469999999999999987532100    0001100000           000            


Q ss_pred             ---------eecccccCcccceeEEEEeeCCCC--EEEEEeCCCcEEEEECCCCeEEEEEec-----------CCeeEEE
Q 013545           94 ---------VDKQHEHGHKYAISSAIWYPVDTG--LFVTGSYDHYVKVWDTNCTRVVMNFKM-----------PGKVYRT  151 (441)
Q Consensus        94 ---------~~~~~~~~h~~~V~~~~~~~~~~~--~l~sgs~D~~i~iWd~~~~~~~~~~~~-----------~~~~~~~  151 (441)
                               +......+..+.+.|..+-..++.  +++.|-.++.+-+||+.++..+.+++.           .+++.++
T Consensus       132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl  211 (323)
T KOG0322|consen  132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL  211 (323)
T ss_pred             ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence                     000111234455655543222333  456778899999999999866655442           3445566


Q ss_pred             eeccCCCCccEEEEEeCCCcEEEEECCCC--cee--eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceee
Q 013545          152 AMSPLAASHMLIAAGTEDVQVRLCDIASG--AIS--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR  227 (441)
Q Consensus       152 ~~~~~~~~~~~las~s~d~~I~vwdl~~~--~~~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~  227 (441)
                      .+.+...   .=++|+.+..+.+|+++..  .+.  .++.--...|..+..-||++ +|||+++|+.||+|..++...+.
T Consensus       212 dyas~~~---rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLA  287 (323)
T KOG0322|consen  212 DYASSCD---RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLA  287 (323)
T ss_pred             eechhhc---CCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchh
Confidence            5554322   2346778888999998754  221  12222234578899999998 79999999999999988754332


Q ss_pred             EeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCe
Q 013545          228 VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV  307 (441)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  307 (441)
                      +                                                                       ++-|.+.|
T Consensus       288 V-----------------------------------------------------------------------LkyHsagv  296 (323)
T KOG0322|consen  288 V-----------------------------------------------------------------------LKYHSAGV  296 (323)
T ss_pred             h-----------------------------------------------------------------------hhhhhcce
Confidence            2                                                                       23477889


Q ss_pred             EEEEEccCCCEEEEeecCCcEEEeeC
Q 013545          308 TGLKVTEDGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       308 ~~l~~s~dg~~l~sgs~D~~i~~wd~  333 (441)
                      ++|+|+|+...+|++|.|.+|.+|++
T Consensus       297 n~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  297 NAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=4.6e-13  Score=118.64  Aligned_cols=174  Identities=13%  Similarity=0.152  Sum_probs=119.3

Q ss_pred             ceeeecCCCCceeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc-ceeEEEEe
Q 013545           35 YKEIVSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWY  112 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~  112 (441)
                      .-+.+.+|...++.+.|... ....+.||+.||+|++||+.......          +     ....+|.+ +..++...
T Consensus        62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a----------~-----~~~~~~~~~~f~~ld~n  126 (376)
T KOG1188|consen   62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA----------R-----ISWTQQSGTPFICLDLN  126 (376)
T ss_pred             hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh----------h-----eeccCCCCCcceEeecc
Confidence            34556789999999999743 34679999999999999987543211          0     11123332 23333322


Q ss_pred             eCCCCEEEEEeC----CCcEEEEECCCCeE-EEEE--ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---e
Q 013545          113 PVDTGLFVTGSY----DHYVKVWDTNCTRV-VMNF--KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---I  182 (441)
Q Consensus       113 ~~~~~~l~sgs~----D~~i~iWd~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~  182 (441)
                      - ...++++|..    |-.|.+||++..+. +..+  .+...+.++.|+|..  ..+|++||.||-|.+||++...   .
T Consensus       127 c-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~--pnlLlSGSvDGLvnlfD~~~d~EeDa  203 (376)
T KOG1188|consen  127 C-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD--PNLLLSGSVDGLVNLFDTKKDNEEDA  203 (376)
T ss_pred             C-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC--CCeEEeecccceEEeeecCCCcchhh
Confidence            1 3445666543    67899999987765 4433  245678899999864  4699999999999999997543   1


Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee
Q 013545          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF  226 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~  226 (441)
                      +...-.|...|.++.|..++-..+.+-+...+..+|+++.+.+.
T Consensus       204 L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  204 LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            22223577889999999886212566778899999999887643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=7.9e-12  Score=117.85  Aligned_cols=288  Identities=18%  Similarity=0.233  Sum_probs=183.2

Q ss_pred             CCCCceeEEEccCCCCcE-EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCE
Q 013545           41 PHKGSINSLQVDLTEERY-LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGL  118 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~  118 (441)
                      .|...-+.|..+| +|+| ++||-.--.|++||+.....              ..     ..|. ..|......+.|-..
T Consensus        49 e~p~ast~ik~s~-DGqY~lAtG~YKP~ikvydlanLSL--------------KF-----ERhlDae~V~feiLsDD~SK  108 (703)
T KOG2321|consen   49 EMPTASTRIKVSP-DGQYLLATGTYKPQIKVYDLANLSL--------------KF-----ERHLDAEVVDFEILSDDYSK  108 (703)
T ss_pred             CCccccceeEecC-CCcEEEEecccCCceEEEEccccee--------------ee-----eecccccceeEEEeccchhh
Confidence            5778899999996 5777 58888888999999864421              01     1122 123333333323223


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      ++---.|++|-+..-- |. -....++....++.++-...  .++.+| ....|.-++|+.|..+..+.-..+.++++..
T Consensus       109 ~v~L~~DR~IefHak~-G~-hy~~RIP~~GRDm~y~~~sc--Dly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~i  183 (703)
T KOG2321|consen  109 SVFLQNDRTIEFHAKY-GR-HYRTRIPKFGRDMKYHKPSC--DLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSI  183 (703)
T ss_pred             heEeecCceeeehhhc-Ce-eeeeecCcCCccccccCCCc--cEEEee-cCcceEEEEccccccccccccccccceeeee
Confidence            3333456666554221 11 11122232233344433222  233333 3457999999999999999888899999999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  278 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (441)
                      ++-.. +|++|+.||.|.+||.|....+..++.....                                           
T Consensus       184 n~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v-------------------------------------------  219 (703)
T KOG2321|consen  184 NEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSV-------------------------------------------  219 (703)
T ss_pred             cCccc-eEEecccCceEEEecchhhhhheeeeccccc-------------------------------------------
Confidence            99875 7888989999999999875443333221100                                           


Q ss_pred             ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545          279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (441)
                             .  .++        .......|+++.|+.+|-.++.|+.+|.+.|||+++.++.+..-+   .....+..+.+
T Consensus       220 -------~--s~p--------g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh---~~e~pi~~l~~  279 (703)
T KOG2321|consen  220 -------N--SHP--------GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH---GYELPIKKLDW  279 (703)
T ss_pred             -------C--CCc--------cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc---CCccceeeecc
Confidence                   0  000        001124599999999999999999999999999998775432111   11222334444


Q ss_pred             eCC--CcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          359 TQD--PAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       359 ~~~--~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                      .+.  ...+++.-...+++||-.+|+....+.-- ..++++++-|++.++++|-++..+..+
T Consensus       280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             cccCCCceEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence            333  23344433357999999999988776633 449999999999999999888766554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.48  E-value=1.2e-13  Score=126.90  Aligned_cols=194  Identities=19%  Similarity=0.340  Sum_probs=149.7

Q ss_pred             eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCC
Q 013545           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH  126 (441)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~  126 (441)
                      +.+.++ .+|++|+-|+.-|.+..+|-.+...         +..+.+         ...|.++.|.+  .+.++......
T Consensus       133 Y~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L---------~~Ei~v---------~Etv~Dv~~LH--neq~~AVAQK~  191 (545)
T KOG1272|consen  133 YHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKL---------HFEINV---------METVRDVTFLH--NEQFFAVAQKK  191 (545)
T ss_pred             eeeeec-CCccEEEecCCccceeeeeccccee---------eeeeeh---------hhhhhhhhhhc--chHHHHhhhhc
Confidence            578887 5789999999999999999765431         001111         12455677765  23455555778


Q ss_pred             cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEE
Q 013545          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWIL  206 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l  206 (441)
                      -+.|||- .|..++.++-...+..+.|-|.   +.+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-+. ++
T Consensus       192 y~yvYD~-~GtElHClk~~~~v~rLeFLPy---HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vi  266 (545)
T KOG1272|consen  192 YVYVYDN-NGTELHCLKRHIRVARLEFLPY---HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VI  266 (545)
T ss_pred             eEEEecC-CCcEEeehhhcCchhhhcccch---hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eE
Confidence            8999995 4666777776677888888775   45899999999999999999999988888888888888889876 67


Q ss_pred             EEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcc
Q 013545          207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR  286 (441)
Q Consensus       207 ~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (441)
                      -.|...|+|.+|...+...                                                             
T Consensus       267 h~GhsnGtVSlWSP~skeP-------------------------------------------------------------  285 (545)
T KOG1272|consen  267 HLGHSNGTVSLWSPNSKEP-------------------------------------------------------------  285 (545)
T ss_pred             EEcCCCceEEecCCCCcch-------------------------------------------------------------
Confidence            8899999999998653210                                                             


Q ss_pred             cccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       287 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                ......|.++|.+|++.++|.|+||.+.|..++|||++.-.
T Consensus       286 ----------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  286 ----------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             ----------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence                      01134789999999999999999999999999999998643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=3.3e-12  Score=128.17  Aligned_cols=196  Identities=16%  Similarity=0.233  Sum_probs=149.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~  192 (441)
                      +..+++.+..+..+.+||...+..+.........  +.....-++.....+++|+.-+.|.+|+..--+....+.||.+.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            4557888888899999999887777666554332  22333334445668999999999999999733333368899999


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      +.++.|+-+|.+ ++|.|+|.++|+|++.+.+...                                             
T Consensus       178 iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~---------------------------------------------  211 (967)
T KOG0974|consen  178 IFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLG---------------------------------------------  211 (967)
T ss_pred             eEEEEEccCCcE-EEEEecCcceeeeecccccccC---------------------------------------------
Confidence            999999999975 7999999999999998642110                                             


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                               ...-+|...|..++|+|+  +++|++.|-++++|+..-                 
T Consensus       212 -------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-----------------  247 (967)
T KOG0974|consen  212 -------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-----------------  247 (967)
T ss_pred             -------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEeccc-----------------
Confidence                                     012368889999999999  999999999999995432                 


Q ss_pred             ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                                                   ..+.++.+|. +.|+.++..++.-.++|++.|+.+++|+.....+.+..
T Consensus       248 -----------------------------~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~  296 (967)
T KOG0974|consen  248 -----------------------------TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHV  296 (967)
T ss_pred             -----------------------------ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccce
Confidence                                         1122344554 45999999999999999999999999999877766543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=1.7e-11  Score=110.76  Aligned_cols=238  Identities=13%  Similarity=0.171  Sum_probs=165.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEE------ec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc----eee
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNF------KM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA----ISQ  184 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~----~~~  184 (441)
                      .+.+..++.|..+.+.++....+....      .+ .+++..+..     .+-.|.+|-.+|.+++|..+.+.    .+.
T Consensus        69 tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-----~dg~Litc~~sG~l~~~~~k~~d~hss~l~  143 (412)
T KOG3881|consen   69 TEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-----ADGTLITCVSSGNLQVRHDKSGDLHSSKLI  143 (412)
T ss_pred             eeEeeccccCcccccccccCCccccccccccccccccccccchhh-----cCCEEEEEecCCcEEEEeccCCccccccce
Confidence            345556656666766666544433221      00 112222211     12356677889999999998543    222


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecC--CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCD--GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~D--g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      .+..+ ..+..+.-+|..++++++|+..  ..+++||+...  ..++.....+      ..                   
T Consensus       144 ~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvp------nD-------------------  195 (412)
T KOG3881|consen  144 KLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVP------ND-------------------  195 (412)
T ss_pred             eeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCC------Cc-------------------
Confidence            33323 4566777788888888889999  89999998754  2222211000      00                   


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC--CCEEEEeecCCcEEEeeCCCCCcee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--GMYLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                           .+.              .--.-+++++.|-|.  ...||+++.-+.+|+||+..++...
T Consensus       196 ---------------------~L~--------------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV  240 (412)
T KOG3881|consen  196 ---------------------RLG--------------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV  240 (412)
T ss_pred             ---------------------ccc--------------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence                                 000              001235778889988  8899999999999999999887654


Q ss_pred             eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEee-ecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~-l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                      .   .+.+.......+...|++..++++.. ..+..||+..++++.. |.|-.+.|.++..+|.+++|++||-|+.+||+
T Consensus       241 ~---~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  241 A---QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             e---EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence            3   33445566677888899999888765 6899999999998876 99999999999999999999999999999999


Q ss_pred             CCCCCC
Q 013545          419 CPSRHI  424 (441)
Q Consensus       419 ~~~~~~  424 (441)
                      |+.+.+
T Consensus       318 D~ktrk  323 (412)
T KOG3881|consen  318 DIKTRK  323 (412)
T ss_pred             ecccch
Confidence            999844

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.2e-10  Score=98.99  Aligned_cols=231  Identities=15%  Similarity=0.158  Sum_probs=154.2

Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCC---------e-EEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          110 IWYPVDTGLFVTGSYDHYVKVWDTNCT---------R-VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       110 ~~~~~~~~~l~sgs~D~~i~iWd~~~~---------~-~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      +++| .+++|+.|..+|+|.+..+++-         + ++..+ -++++++.+.++.     ..|.+|+ ||.|+=|.-+
T Consensus        17 a~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   17 AISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             hhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEEeeeh
Confidence            4555 4779999999999999987531         1 12221 2467788888873     2455654 5999988653


Q ss_pred             CC------ceeee--ecCCC-----CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccc
Q 013545          179 SG------AISQT--LSGHR-----DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR  245 (441)
Q Consensus       179 ~~------~~~~~--l~~h~-----~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (441)
                      .-      +.+..  .+-|.     ..|.++...|....+| .++.|+.+.-||+++++-.+.                 
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~-----------------  151 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQRE-----------------  151 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEE-----------------
Confidence            21      11111  12233     3578888888866554 555899999999988753332                 


Q ss_pred             cccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC
Q 013545          246 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD  325 (441)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  325 (441)
                                                                            ..+|.+.|.+|.--.-...|.||+.|
T Consensus       152 ------------------------------------------------------~rGHtDYvH~vv~R~~~~qilsG~ED  177 (325)
T KOG0649|consen  152 ------------------------------------------------------YRGHTDYVHSVVGRNANGQILSGAED  177 (325)
T ss_pred             ------------------------------------------------------EcCCcceeeeeeecccCcceeecCCC
Confidence                                                                  34788899999886666789999999


Q ss_pred             CcEEEeeCCCCCceee--eeeeEEe-c-cCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          326 SRIRLWDVESGRNTLV--NFETVRL-Q-TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       326 ~~i~~wd~~~~~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      |++|+||+.+++....  .+..... . ......-+...+...++.+++..+.+|.+.+-+...+|. -..+|..|.|-.
T Consensus       178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~  256 (325)
T KOG0649|consen  178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVD  256 (325)
T ss_pred             ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeec
Confidence            9999999999874321  1111000 0 111222334445567777777899999998877766654 445588888875


Q ss_pred             CCCeEEEeecCCcEEEeCCCC
Q 013545          402 QDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       402 d~~~l~s~s~D~~i~vW~~~~  422 (441)
                        ..++++|+.+.|.-|....
T Consensus       257 --d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  257 --DCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             --ceEEEeccccceeeeeecc
Confidence              4688899999999998753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.1e-10  Score=114.41  Aligned_cols=217  Identities=17%  Similarity=0.191  Sum_probs=138.1

Q ss_pred             cccceeEEEEeeCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEE
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD  176 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwd  176 (441)
                      +...+....|+| ||+.|+..+.   +..|.+||+.+++........+......++|++.  .++.+.+.++  .|.+||
T Consensus       197 ~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        197 SPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             CCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC--EEEEEEcCCCCcEEEEEE
Confidence            344567788887 7888876543   4579999998886544334445555677888653  3444444444  599999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC--CCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      +++++..+ +..+...+....|+|+++.++.+...++..+||.+.  .+...+ +                         
T Consensus       274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-l-------------------------  326 (429)
T PRK03629        274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-I-------------------------  326 (429)
T ss_pred             CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-e-------------------------
Confidence            99887644 444455678899999998765554445666777443  211000 0                         


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---CcEEEe
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SRIRLW  331 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~~w  331 (441)
                                                                    ..+........|+|||++|+..+.+   ..|.+|
T Consensus       327 ----------------------------------------------t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~  360 (429)
T PRK03629        327 ----------------------------------------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  360 (429)
T ss_pred             ----------------------------------------------ecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence                                                          0011123457899999998876544   358889


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-C---ceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      |+.+++...  +.    .........++||+..++..+. .   .+.++++ +|.....+.+|.+.+...+|||
T Consensus       361 dl~~g~~~~--Lt----~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        361 DLATGGVQV--LT----DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ECCCCCeEE--eC----CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            998775321  11    0111224568899998776543 2   2455666 5667788888999999999998

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=2.9e-11  Score=109.00  Aligned_cols=256  Identities=11%  Similarity=0.132  Sum_probs=167.9

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC------CCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN------CTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDV  170 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~  170 (441)
                      ..+|.+.|+++.|+. ++..|+|||+|..+++|.+.      +.+++.....  ...+++++|..   .+..+.+|..++
T Consensus        52 ~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~---~N~~~~SG~~~~  127 (609)
T KOG4227|consen   52 VREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL---ENRFLYSGERWG  127 (609)
T ss_pred             hhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc---CCeeEecCCCcc
Confidence            358999999999987 58899999999999999874      3344443332  24466666654   346789999999


Q ss_pred             cEEEEECCCCceeeeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccc
Q 013545          171 QVRLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKS  247 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  247 (441)
                      +|...|+++.+.+..+.  ...+.|..+..+|-.. +|++.+.++.|-+||+|... ....+.                 
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----------------  189 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVL-----------------  189 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceee-----------------
Confidence            99999999998877664  2345899999999865 78999999999999998421 000000                 


Q ss_pred             cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCC
Q 013545          248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDS  326 (441)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~  326 (441)
                                                                          +........++-|+|-- .+|++.+..+
T Consensus       190 ----------------------------------------------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~  217 (609)
T KOG4227|consen  190 ----------------------------------------------------PANSGKNFYTAEFHPETPALILVNSETG  217 (609)
T ss_pred             ----------------------------------------------------ecCCCccceeeeecCCCceeEEeccccC
Confidence                                                                00011235567788875 4677888888


Q ss_pred             cEEEeeCCCCCceeeeeeeEE-ecc--CcceEEEeeCCCcEEEEeCCC-ceEEEEccCCceEeeecccc-------cceE
Q 013545          327 RIRLWDVESGRNTLVNFETVR-LQT--SKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHY-------EYVN  395 (441)
Q Consensus       327 ~i~~wd~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~-------~~v~  395 (441)
                      -+-+||+......+..+.... +++  ..-+...++++|+-+++.-.. ---+||+-+..+..--..|.       ..+.
T Consensus       218 G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~K  297 (609)
T KOG4227|consen  218 GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIK  297 (609)
T ss_pred             CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeee
Confidence            899999986543222111111 111  112345566776655443322 22456665544332222232       2367


Q ss_pred             EEEEcCCCCeEEEeecCCcEEEeCCC-CCCCCCcc
Q 013545          396 CCCFSSQDQELYTGGNDRQILVWCPS-RHISDGVD  429 (441)
Q Consensus       396 ~v~fspd~~~l~s~s~D~~i~vW~~~-~~~~~~~~  429 (441)
                      +++|--| ..++|||.|=.|.+|.++ .+.+.|+.
T Consensus       298 S~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~  331 (609)
T KOG4227|consen  298 SMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFT  331 (609)
T ss_pred             eeeeecc-eeeeccCcccceEEEecCCCccccCcc
Confidence            7888865 569999999999999776 34466644

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.7e-10  Score=111.75  Aligned_cols=217  Identities=11%  Similarity=0.084  Sum_probs=133.1

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE---eCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG---TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~---s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      ..|.+||.............+.+....++|++.   .|+..   ..+..|.+||+.+++... +....+.+..+.|+|+|
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDG  254 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCC
Confidence            368889886554333233445677888898753   34332   234579999999886432 22223334568999999


Q ss_pred             CcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545          203 EWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  280 (441)
Q Consensus       203 ~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (441)
                      +.++++.+.+|  .|.+||+.++...+..                                                   
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------------------------------------------------  283 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVT---------------------------------------------------  283 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------------------------------------
Confidence            97766655555  4778887654321100                                                   


Q ss_pred             CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC-Cc--EEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-SR--IRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                           .+...+...+|+|||+.|+..+.+ +.  |.++|+.++....     +...........
T Consensus       284 ---------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-----lt~~~~~~~~~~  337 (429)
T PRK03629        284 ---------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-----ITWEGSQNQDAD  337 (429)
T ss_pred             ---------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-----eecCCCCccCEE
Confidence                                 011234567899999998877654 44  4444666554211     111122233467


Q ss_pred             eeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc---EEEeCCCCCCC
Q 013545          358 TTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ---ILVWCPSRHIS  425 (441)
Q Consensus       358 ~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~---i~vW~~~~~~~  425 (441)
                      ++||+..++....    ..+.+||+.+++.. .+... .......|||||++|+.++.|+.   +.+|+++....
T Consensus       338 ~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~  410 (429)
T PRK03629        338 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  410 (429)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence            8899988766432    35778898887643 33322 22456789999999998888764   67778765443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.39  E-value=2.4e-11  Score=105.41  Aligned_cols=76  Identities=21%  Similarity=0.354  Sum_probs=55.9

Q ss_pred             cCeEEEEEccCCCEEEEeecC---CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCC
Q 013545          305 GAVTGLKVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG  381 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~D---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~  381 (441)
                      ..++.|.|+|+|++|+.++.+   |.|.+||+.+.+..                                          
T Consensus       101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i------------------------------------------  138 (194)
T PF08662_consen  101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI------------------------------------------  138 (194)
T ss_pred             CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe------------------------------------------
Confidence            346789999999999998754   56999998853311                                          


Q ss_pred             ceEeeecccccceEEEEEcCCCCeEEEeec------CCcEEEeCCCCCCCCC
Q 013545          382 KTCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISDG  427 (441)
Q Consensus       382 ~~~~~l~gh~~~v~~v~fspd~~~l~s~s~------D~~i~vW~~~~~~~~~  427 (441)
                         .++ .| ..+..++|||||++|+|+..      |..++||+....++..
T Consensus       139 ---~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~  185 (194)
T PF08662_consen  139 ---STF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK  185 (194)
T ss_pred             ---ecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence               011 12 23789999999999998764      7899999997655443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.39  E-value=1.2e-11  Score=118.40  Aligned_cols=236  Identities=19%  Similarity=0.288  Sum_probs=161.3

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.||...|+|++++ .+|+.++||+.|+.+.||+-+-.                   +-..+.|.+.|.|+.|.| -..
T Consensus        48 tLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klE-------------------G~LkYSH~D~IQCMsFNP-~~h  106 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLE-------------------GILKYSHNDAIQCMSFNP-ITH  106 (1081)
T ss_pred             ccccccceEEEEEEc-cCCceeccCCCceeEEEeccccc-------------------ceeeeccCCeeeEeecCc-hHH
Confidence            456999999999998 57889999999999999985421                   112357999999999988 466


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee---eeecCCCCCeE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS---QTLSGHRDGIM  194 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~---~~l~~h~~~v~  194 (441)
                      +|+||+.. ..-+|......+ ...+....+.++++..+   ..+++-|..||+|.+-+- +++..   ..--|..++|+
T Consensus       107 ~LasCsLs-dFglWS~~qK~V-~K~kss~R~~~CsWtnD---GqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiw  180 (1081)
T KOG1538|consen  107 QLASCSLS-DFGLWSPEQKSV-SKHKSSSRIICCSWTND---GQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIW  180 (1081)
T ss_pred             Hhhhcchh-hccccChhhhhH-HhhhhheeEEEeeecCC---CcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCce
Confidence            89999875 467897765443 22333445666666664   458999999999999864 44432   23336789999


Q ss_pred             EEEEecCCC----cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          195 TVEWSTSSE----WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       195 ~v~fsp~~~----~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      ++.|+|+..    .+++...+..++.++.+.. +.          +++.                               
T Consensus       181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~----------Igk~-------------------------------  218 (1081)
T KOG1538|consen  181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQ----------IGKD-------------------------------  218 (1081)
T ss_pred             EEEecCCCCCCccceEEEEeccceeEEEEecc-ee----------eccc-------------------------------
Confidence            999999742    2455556666666665431 00          0000                               


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                    ..-.-...++.+.++|.++..|+.|+.+++|.-+.     ..+.++....
T Consensus       219 ------------------------------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-----vrLGTvg~~D  263 (1081)
T KOG1538|consen  219 ------------------------------RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-----VRLGTVGEQD  263 (1081)
T ss_pred             ------------------------------ccCCCCchhheeccCCcEEEEccCCCceEEEeecC-----eEEeeccccc
Confidence                                          00011245788999999999999999999995432     1123333334


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEE
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFD  377 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd  377 (441)
                      ..+.+++..|++..++.+|. +++-.|+
T Consensus       264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  264 SWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             eeEEEEEEccCCceEEEEEccCeeehhh
Confidence            55677888899988888876 4555554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.39  E-value=9.8e-11  Score=115.23  Aligned_cols=246  Identities=15%  Similarity=0.159  Sum_probs=162.3

Q ss_pred             CCcEEEEECCCC-eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce--ee----eecCCCCCeEEEE
Q 013545          125 DHYVKVWDTNCT-RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI--SQ----TLSGHRDGIMTVE  197 (441)
Q Consensus       125 D~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~--~~----~l~~h~~~v~~v~  197 (441)
                      +..+-+|+++.. .+...+.....+.++.++|+.+  .+++.|+.+|+|.+||+..+..  ..    ....|...++.+.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence            347899999876 5566677778899999999754  6899999999999999987754  21    2346899999999


Q ss_pred             EecCCC-cEEEEeecCCcEEEEEcCCCcee-eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          198 WSTSSE-WILVTGGCDGAIRFWDIRRAGCF-RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       198 fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      |..+-. .-|+|+|.||.|..|+++.-.+- .....                                            
T Consensus       299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~--------------------------------------------  334 (555)
T KOG1587|consen  299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL--------------------------------------------  334 (555)
T ss_pred             EeccCCCCceEEEecCCcEeeeeccccccchhhccc--------------------------------------------
Confidence            976522 22689999999999988743210 00000                                            


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCcee----eeeeeEEecc
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTL----VNFETVRLQT  350 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~----~~~~~~~~~~  350 (441)
                                ....+.    . ... .-...+++++|.+.. ..++.|+.+|.|.-=+-...+...    ........+.
T Consensus       335 ----------~~~~~~----~-~~~-~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~  398 (555)
T KOG1587|consen  335 ----------ESKKHK----G-QQS-SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI  398 (555)
T ss_pred             ----------cccccc----c-ccc-ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence                      000000    0 000 011247889999864 468889999988763332222111    1111112223


Q ss_pred             CcceEEEeeCCCcEEEE-eCCCceEEEEcc-CCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCCCCCC
Q 013545          351 SKPIQLATTQDPAVVFV-PCMTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~-~~~~~~~~wd~~-~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~~~~~  427 (441)
                      +....+..+|=...++. +++.++++|.-. ...++..+..+...|.+++|||-- ..++++..||.|-+||+.......
T Consensus       399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P  478 (555)
T KOG1587|consen  399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP  478 (555)
T ss_pred             cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence            33444555555554444 456799999887 667777888899999999999975 447788889999999998777665


Q ss_pred             ccCCc
Q 013545          428 VDAGP  432 (441)
Q Consensus       428 ~~~~~  432 (441)
                      +..=+
T Consensus       479 v~s~~  483 (555)
T KOG1587|consen  479 VLSQK  483 (555)
T ss_pred             ccccc
Confidence            54443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.39  E-value=3.3e-10  Score=99.96  Aligned_cols=239  Identities=13%  Similarity=0.253  Sum_probs=147.6

Q ss_pred             eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE-EEeC
Q 013545           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV-TGSY  124 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~-sgs~  124 (441)
                      ..+++|+. +. -..+.+.|...|||+++...+...              .+...+- -.+..+.+-   .++|| .||.
T Consensus         8 ~lsvs~NQ-D~-ScFava~~~Gfriyn~~P~ke~~~--------------r~~~~~G-~~~veMLfR---~N~laLVGGg   67 (346)
T KOG2111|consen    8 TLSVSFNQ-DH-SCFAVATDTGFRIYNCDPFKESAS--------------RQFIDGG-FKIVEMLFR---SNYLALVGGG   67 (346)
T ss_pred             eeEEEEcc-CC-ceEEEEecCceEEEecCchhhhhh--------------hccccCc-hhhhhHhhh---hceEEEecCC
Confidence            34488874 33 355566777789999875332100              0000000 112222221   22333 3343


Q ss_pred             C------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-CCceeeeecCC--CCCeEE
Q 013545          125 D------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAISQTLSGH--RDGIMT  195 (441)
Q Consensus       125 D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-~~~~~~~l~~h--~~~v~~  195 (441)
                      +      ..|-|||=...+++.++...+++..+.+..+     .|++. ..+.|+||... +.+.++.+...  +....+
T Consensus        68 ~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~-----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~  141 (346)
T KOG2111|consen   68 SRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD-----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS  141 (346)
T ss_pred             CCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC-----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe
Confidence            3      5799999777788888888888888888764     34444 35789999987 44555555422  222222


Q ss_pred             EEEecC-CCcEEEE-eecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          196 VEWSTS-SEWILVT-GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       196 v~fsp~-~~~~l~s-~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      +  +|. ++.+||- |-.-|.|+|=|+...+.                                                
T Consensus       142 ~--~~~~~k~~LafPg~k~GqvQi~dL~~~~~------------------------------------------------  171 (346)
T KOG2111|consen  142 L--CPTSNKSLLAFPGFKTGQVQIVDLASTKP------------------------------------------------  171 (346)
T ss_pred             e--cCCCCceEEEcCCCccceEEEEEhhhcCc------------------------------------------------
Confidence            2  222 2233443 23346777777653110                                                


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCc-EEEeeCCCCCceeeeeeeEEeccCc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                           .......+|.+.|.+|+..-+|..|||+|..|| |||||..++....    ..+..   
T Consensus       172 ---------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~----E~RRG---  223 (346)
T KOG2111|consen  172 ---------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ----ELRRG---  223 (346)
T ss_pred             ---------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee----eeecC---
Confidence                                 001124689999999999999999999999998 7899988875321    11100   


Q ss_pred             ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                                                          .....|.|++||||+.+|+.+|+.||+.|+.+....
T Consensus       224 ------------------------------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  224 ------------------------------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ------------------------------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence                                                022459999999999999999999999999876544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.38  E-value=2.5e-10  Score=100.73  Aligned_cols=221  Identities=18%  Similarity=0.274  Sum_probs=153.5

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      .+|+|.+|++ +...+|.+-+...|-||.......++.              ..+...|...|+.+.|.| ..+.|+||+
T Consensus        11 ~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~--------------~htls~Hd~~vtgvdWap-~snrIvtcs   74 (361)
T KOG1523|consen   11 EPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEP--------------AHTLSEHDKIVTGVDWAP-KSNRIVTCS   74 (361)
T ss_pred             CceeeeeecC-CCceEEeccCCceEEEEEecCCCCcee--------------ceehhhhCcceeEEeecC-CCCceeEcc
Confidence            6899999985 677899999999999998654433321              123446888999999988 577999999


Q ss_pred             CCCcEEEEEC-CCCeE---EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee----eeecCCCCCeEE
Q 013545          124 YDHYVKVWDT-NCTRV---VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS----QTLSGHRDGIMT  195 (441)
Q Consensus       124 ~D~~i~iWd~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~----~~l~~h~~~v~~  195 (441)
                      .|+.-.+|.. ..++-   +..+.++.....+.++|..   +.+|+|+....|.||-++..+--    +.-+.+.+.|.+
T Consensus        75 ~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e---nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s  151 (361)
T KOG1523|consen   75 HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE---NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS  151 (361)
T ss_pred             CCCCccccccCCCCeeccceeEEEeccceeeEeecCcC---ceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence            9999999988 44432   2234456677788888854   57999999999999998765422    233467889999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      ++|+|++- +|+.||.|+.+|+|..-    +...+....                       +.+.....+.|..+    
T Consensus       152 ldWhpnnV-LlaaGs~D~k~rVfSay----IK~Vdekpa-----------------------p~pWgsk~PFG~lm----  199 (361)
T KOG1523|consen  152 LDWHPNNV-LLAAGSTDGKCRVFSAY----IKGVDEKPA-----------------------PTPWGSKMPFGQLM----  199 (361)
T ss_pred             eeccCCcc-eecccccCcceeEEEEe----eeccccCCC-----------------------CCCCccCCcHHHHH----
Confidence            99999975 78999999999999641    111111000                       00000000000000    


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                .            ......+.|..+.|+|.|..|+=.+-|+++.+=|.....
T Consensus       200 ----------~------------E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  200 ----------S------------EASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ----------H------------hhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence                      0            001224679999999999999999999999999877553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=6.4e-12  Score=116.30  Aligned_cols=263  Identities=17%  Similarity=0.233  Sum_probs=179.7

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      +..|.+.|..+.|.. .|+.++|||+|.+|.+||-..+.....+...  ..+.+..|.|+... .-++.++.|+.+++=.
T Consensus       138 L~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQVRVSE  215 (559)
T ss_pred             ccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCceeeee
Confidence            348999999999876 6899999999999999998888876665422  23455557776543 4577888999999988


Q ss_pred             CCC-Cce--eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          177 IAS-GAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       177 l~~-~~~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      +.. +..  ...+..|.+.|.-++.-|+..+-|.|++.|+.+.-.|++.......+...                     
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr---------------------  274 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR---------------------  274 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee---------------------
Confidence            643 332  34566799999999999998888999999999999999865322211000                     


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec---cCeEEEEEccCCC-EEEEeecCCcEE
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY---GAVTGLKVTEDGM-YLLSAGSDSRIR  329 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~-~l~sgs~D~~i~  329 (441)
                                                                     ..+.   -...+++..|-.. ++++|+.|..+|
T Consensus       275 -----------------------------------------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~R  307 (559)
T KOG1334|consen  275 -----------------------------------------------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFAR  307 (559)
T ss_pred             -----------------------------------------------ccCCccceeeeeEecCCCCccccccCChhhhhh
Confidence                                                           0000   1256788888776 789999999999


Q ss_pred             EeeCCCCCce--------eeeeeeEEeccCcceEEEeeCCCcE-EEEeCCCceEEEEc--cCC----------ceEe-ee
Q 013545          330 LWDVESGRNT--------LVNFETVRLQTSKPIQLATTQDPAV-VFVPCMTAVKAFDI--WSG----------KTCL-TF  387 (441)
Q Consensus       330 ~wd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wd~--~~~----------~~~~-~l  387 (441)
                      +||..+-...        +++.+......-.+..++++.++.- +++-....+.++.-  ..|          ..++ .+
T Consensus       308 vYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY  387 (559)
T KOG1334|consen  308 VYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY  387 (559)
T ss_pred             hhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence            9998753211        1111111111123445677766554 44445556677743  222          2223 48


Q ss_pred             cccccc--eEEEEE-cCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545          388 RGHYEY--VNCCCF-SSQDQELYTGGNDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       388 ~gh~~~--v~~v~f-spd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~  431 (441)
                      +||...  |.+|-| -|...+++|||.=|.|.||+-.++....+..|
T Consensus       388 KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg  434 (559)
T KOG1334|consen  388 KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG  434 (559)
T ss_pred             cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence            899753  666665 57889999999889999999998876665444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=4.7e-10  Score=110.62  Aligned_cols=218  Identities=10%  Similarity=0.055  Sum_probs=135.7

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe---CCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s---~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      ..|.+||.............+.+....++|++.   .|+..+   .+..|.+||+.+++. ..+..+.+.+.+.+|+|+|
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~---~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQ---EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCC---EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCC
Confidence            478888886554433223445678888898753   344333   246899999998875 3455667778899999999


Q ss_pred             CcEEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545          203 EWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  280 (441)
Q Consensus       203 ~~~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (441)
                      +.++++.+.++.  |.+||+.++...+.                                                    
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~L----------------------------------------------------  285 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTTRL----------------------------------------------------  285 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceEEc----------------------------------------------------
Confidence            977777777766  55557654321110                                                    


Q ss_pred             CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-C--CcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-D--SRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                          ..+.+.....+|+|||+.|+..+. +  ..|++||+.+++....     ...........
T Consensus       286 --------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-----t~~~~~~~~~~  340 (435)
T PRK05137        286 --------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-----SFGGGRYSTPV  340 (435)
T ss_pred             --------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-----ecCCCcccCeE
Confidence                                011122445789999998887663 3  3688888876543211     11122233456


Q ss_pred             eeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC------CcEEEeCCCCCCCC
Q 013545          358 TTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND------RQILVWCPSRHISD  426 (441)
Q Consensus       358 ~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D------~~i~vW~~~~~~~~  426 (441)
                      ++|++..++....    ..+.+||+..+.. ..+. +...+..+.|+|||++|+-.+.+      ..+.+.++.+....
T Consensus       341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~  417 (435)
T PRK05137        341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER  417 (435)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence            8899988766432    2567778755443 3332 22347789999999998754432      24666677665544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.36  E-value=1.3e-10  Score=104.47  Aligned_cols=157  Identities=16%  Similarity=0.244  Sum_probs=116.2

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEE--EeCCCcEEEEECCCC
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAA--GTEDVQVRLCDIASG  180 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las--~s~d~~I~vwdl~~~  180 (441)
                      .|.++..   +.++|+.+=.+. |-|+|+++.++++++...  .+.--+++++... +.++|-  ....|.|.+||+.+-
T Consensus        89 ~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   89 SILAVRM---NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             ceEEEEE---ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEcccc
Confidence            4555555   456777776654 999999999998877643  2222345555432 224442  234689999999999


Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc-EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~-I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                      +....+..|.+++-+++|+|+|. +|||+|.-|+ ||++.+.++..+..|.                             
T Consensus       164 ~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFR-----------------------------  213 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFR-----------------------------  213 (391)
T ss_pred             eeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeee-----------------------------
Confidence            99999999999999999999997 6899999886 7999987764333221                             


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                     .|         .....|.+|+|+|++++|++.|..++|++|.++..
T Consensus       214 -------------------------------RG---------~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  214 -------------------------------RG---------TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             -------------------------------CC---------ceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence                                           00         01245899999999999999999999999998754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.5e-10  Score=114.02  Aligned_cols=217  Identities=17%  Similarity=0.156  Sum_probs=135.0

Q ss_pred             cccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEE
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD  176 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwd  176 (441)
                      |...+.+..|+| |++.|+..+.+   ..|.+||+.+++........+......++|++.  .++.+.+.++  .|++||
T Consensus       202 ~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~--~l~~~~s~~g~~~Iy~~d  278 (433)
T PRK04922        202 SAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR--RLALTLSRDGNPEIYVMD  278 (433)
T ss_pred             CCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC--EEEEEEeCCCCceEEEEE
Confidence            445677778887 78888887753   469999998877644333444445567777643  3444545444  699999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE--cCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD--IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      +.+++. ..+..+.......+|+|+++.+++++..+|...+|.  +..+...+.                          
T Consensus       279 ~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l--------------------------  331 (433)
T PRK04922        279 LGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL--------------------------  331 (433)
T ss_pred             CCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------------------------
Confidence            998874 445566666678899999987655554556655554  332211000                          


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC---cEEEe
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS---RIRLW  331 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~---~i~~w  331 (441)
                                                                    ..+......++|||||++|+..+.++   .|.+|
T Consensus       332 ----------------------------------------------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        332 ----------------------------------------------TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             ----------------------------------------------ecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence                                                          00001123578999999988765443   69999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      |+.+++...  +.    .........+++|+..++....    ..+.++++. +.....+..+.+.+...+|||
T Consensus       366 d~~~g~~~~--Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        366 DLSTGSVRT--LT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ECCCCCeEE--CC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            998765321  11    1112234578899987665432    245666663 445566666667777788876

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.35  E-value=1.2e-10  Score=110.69  Aligned_cols=189  Identities=22%  Similarity=0.359  Sum_probs=140.3

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEec----CCeeEEEeec------cC-----------CCCccEEEEEeCCCcE
Q 013545          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM----PGKVYRTAMS------PL-----------AASHMLIAAGTEDVQV  172 (441)
Q Consensus       114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~----~~~~~~~~~~------~~-----------~~~~~~las~s~d~~I  172 (441)
                      +...+||....||.+||||...++.-..|..    .+......+.      |.           ..+..+++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3467899999999999999988877655542    2332222221      11           1123467778889999


Q ss_pred             EEEECCCCceeeeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          173 RLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       173 ~vwdl~~~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      .+|++..|+....+.  .|.+.|.++.++.+-. .|.|++.|+.+..|+......++.+.                    
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~--------------------  141 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWK--------------------  141 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeec--------------------
Confidence            999999999887775  6999999999987765 57999999999999987654433321                    


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                                                                         +-...+.+++.+|||..+++++  ++|++
T Consensus       142 ---------------------------------------------------~~~~~~~sl~is~D~~~l~~as--~~ik~  168 (541)
T KOG4547|consen  142 ---------------------------------------------------EQKPLVSSLCISPDGKILLTAS--RQIKV  168 (541)
T ss_pred             ---------------------------------------------------cCCCccceEEEcCCCCEEEecc--ceEEE
Confidence                                                               1123477899999999998876  56777


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCC-----CCe
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-----DQE  405 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd-----~~~  405 (441)
                      ||+++.                                             +.+.+|.||.++|.++.|..+     |++
T Consensus       169 ~~~~~k---------------------------------------------evv~~ftgh~s~v~t~~f~~~~~g~~G~~  203 (541)
T KOG4547|consen  169 LDIETK---------------------------------------------EVVITFTGHGSPVRTLSFTTLIDGIIGKY  203 (541)
T ss_pred             EEccCc---------------------------------------------eEEEEecCCCcceEEEEEEEeccccccce
Confidence            777653                                             445678999999999999988     777


Q ss_pred             EE-EeecCCcEEEeCCC
Q 013545          406 LY-TGGNDRQILVWCPS  421 (441)
Q Consensus       406 l~-s~s~D~~i~vW~~~  421 (441)
                      +. ++..+.-|.+|-..
T Consensus       204 vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  204 VLSSAAAERGITVWVVE  220 (541)
T ss_pred             eeeccccccceeEEEEE
Confidence            66 45667778889654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=2.6e-10  Score=111.92  Aligned_cols=220  Identities=16%  Similarity=0.148  Sum_probs=137.2

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEE--
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC--  175 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw--  175 (441)
                      .+...+.+..|+| |++.|+..+.+   ..|.+||+.+++........+......++|++.  .++.+.+.++...+|  
T Consensus       193 ~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        193 SSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR--TLAVALSRDGNSQIYTV  269 (427)
T ss_pred             cCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC--EEEEEEccCCCceEEEE
Confidence            3455677788887 78888877653   359999999887654333455556677888653  344556667765555  


Q ss_pred             ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccC
Q 013545          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      |+.++. ...+..+........|+|+|+.+++++..++...+|.+.... ....+                         
T Consensus       270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-------------------------  323 (427)
T PRK02889        270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-------------------------  323 (427)
T ss_pred             ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-------------------------
Confidence            555554 445555666667789999999765555556788888754210 00000                         


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC---cEEEe
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS---RIRLW  331 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~---~i~~w  331 (441)
                                                                    ..+.......+|||||++|+..+.++   .|.+|
T Consensus       324 ----------------------------------------------t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~  357 (427)
T PRK02889        324 ----------------------------------------------TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ  357 (427)
T ss_pred             ----------------------------------------------ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence                                                          00001122467999999998776554   69999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-C---ceEEEEccCCceEeeecccccceEEEEEcCC
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd  402 (441)
                      |+.+++....  .    .........++||+..++.... .   .+.+.++ ++.....+..+.+.+...+|||-
T Consensus       358 d~~~g~~~~l--t----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        358 DLATGQVTAL--T----DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ECCCCCeEEc--c----CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            9987653211  1    1112234578999988776543 2   2444444 46666666677777888888873

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.35  E-value=7.8e-11  Score=120.15  Aligned_cols=167  Identities=23%  Similarity=0.251  Sum_probs=114.3

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCC
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-------TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTED  169 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d  169 (441)
                      +.+.|+..|..++.+++++.+|+|||.||+||+||++.       .+...++. ..+.+..+.+.+.+   ..+|.++.|
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~---~~~Av~t~D 1119 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG---DQFAVSTKD 1119 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC---CeEEEEcCC
Confidence            45679999999999888889999999999999999752       12233444 34556666666543   468888999


Q ss_pred             CcEEEEECCCCc-------eeeeecCCC--CCeEEEEEecCCCc-EEEEeecCCcEEEEEcCCCceeeEeccCCccccCC
Q 013545          170 VQVRLCDIASGA-------ISQTLSGHR--DGIMTVEWSTSSEW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR  239 (441)
Q Consensus       170 ~~I~vwdl~~~~-------~~~~l~~h~--~~v~~v~fsp~~~~-~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~  239 (441)
                      |.|++.+++..+       ..+....+.  .-|..-+|....+. +++-+..-+.|..||+++....-.++         
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk--------- 1190 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK--------- 1190 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh---------
Confidence            999999997621       111112222  22333344333332 56677778999999998532110000         


Q ss_pred             CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545          240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  319 (441)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  319 (441)
                                                                                  ..-..|.|++++.+|.+..+
T Consensus      1191 ------------------------------------------------------------~~~~hG~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1191 ------------------------------------------------------------NQLRHGLVTSIVIDPWCNWL 1210 (1431)
T ss_pred             ------------------------------------------------------------cCccccceeEEEecCCceEE
Confidence                                                                        01123679999999999999


Q ss_pred             EEeecCCcEEEeeCCCC
Q 013545          320 LSAGSDSRIRLWDVESG  336 (441)
Q Consensus       320 ~sgs~D~~i~~wd~~~~  336 (441)
                      +.|+.-|.+.+||++-+
T Consensus      1211 viGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             EEecCCceEEEEEeecC
Confidence            99999999999999743

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3.9e-10  Score=111.06  Aligned_cols=222  Identities=14%  Similarity=0.133  Sum_probs=137.5

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      .+|.+||...............+....++|++.   .|+..+.   +..|.+||+.+++.. .+..+.+...+.+|+|++
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~---~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGK---KLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCC---EEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCC
Confidence            469999986544333223344566777887643   4444442   346999999888753 333444555688999999


Q ss_pred             CcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545          203 EWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  280 (441)
Q Consensus       203 ~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (441)
                      +.++++.+.+|  .|.+||+.++.....                                                    
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~l----------------------------------------------------  287 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLTRL----------------------------------------------------  287 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeEEC----------------------------------------------------
Confidence            87766766666  588888765431110                                                    


Q ss_pred             CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCc--EEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSR--IRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                          ..+.......+|+|||++|+..+. ++.  |.++|+.+++....     ..........+
T Consensus       288 --------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-----t~~g~~~~~~~  342 (433)
T PRK04922        288 --------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-----TFQGNYNARAS  342 (433)
T ss_pred             --------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----ecCCCCccCEE
Confidence                                011122345789999998887663 444  66667766542211     11122233568


Q ss_pred             eeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC---CcEEEeCCCCCCCCCccC
Q 013545          358 TTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND---RQILVWCPSRHISDGVDA  430 (441)
Q Consensus       358 ~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D---~~i~vW~~~~~~~~~~~~  430 (441)
                      +++++..++....    ..+.+||+.+++.. .+. +........|+|||++|+..+.+   ..|.+++.+......+..
T Consensus       343 ~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~  420 (433)
T PRK04922        343 VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS  420 (433)
T ss_pred             ECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence            8999988776432    25889999877654 333 22345677999999998866553   357777886655443433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.33  E-value=5.1e-11  Score=111.68  Aligned_cols=220  Identities=14%  Similarity=0.256  Sum_probs=145.4

Q ss_pred             ccEEEEEeCCCcEEEEECCCCceeeeec----CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcc
Q 013545          160 HMLIAAGTEDVQVRLCDIASGAISQTLS----GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ  235 (441)
Q Consensus       160 ~~~las~s~d~~I~vwdl~~~~~~~~l~----~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~  235 (441)
                      ..-|..|..-+.|.+.|....+..+-+.    -....|+|+.|-|.++.+|+.+..+|.+.+||.....      ..+. 
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t~-  257 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GATA-  257 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCCC-
Confidence            3346667788899999876643322221    1347799999999988888888999999999863210      0000 


Q ss_pred             ccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC
Q 013545          236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  315 (441)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  315 (441)
                           +....            .+       .+....+..      .   ......   +...+..--.+.|+..+|+||
T Consensus       258 -----p~~~~------------~k-------~~~~f~i~t------~---ksk~~r---NPv~~w~~~~g~in~f~FS~D  301 (636)
T KOG2394|consen  258 -----PSYQA------------LK-------DGDQFAILT------S---KSKKTR---NPVARWHIGEGSINEFAFSPD  301 (636)
T ss_pred             -----Ccccc------------cC-------CCCeeEEee------e---eccccC---CccceeEeccccccceeEcCC
Confidence                 00000            00       000000000      0   000000   001112222457999999999


Q ss_pred             CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce
Q 013545          316 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV  394 (441)
Q Consensus       316 g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v  394 (441)
                      |++||+-|.||.+||+|..+.+..    ..++-..+...+++++||++++++++. +-|.+|.+..++.+..=.||+.+|
T Consensus       302 G~~LA~VSqDGfLRvF~fdt~eLl----g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWV  377 (636)
T KOG2394|consen  302 GKYLATVSQDGFLRIFDFDTQELL----GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWV  377 (636)
T ss_pred             CceEEEEecCceEEEeeccHHHHH----HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccce
Confidence            999999999999999999875421    111122356678999999999999877 468999999999999999999999


Q ss_pred             EEEEEcC-------------------------------C----C-------------CeEEEeecCCcEEEeCCCCCCCC
Q 013545          395 NCCCFSS-------------------------------Q----D-------------QELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       395 ~~v~fsp-------------------------------d----~-------------~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      +.|+|.|                               +    +             =.|.|.|.|..+.+||+.-..+-
T Consensus       378 s~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  378 SVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             eeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence            9999983                               1    1             13678899999999999865543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.32  E-value=1.5e-10  Score=108.49  Aligned_cols=207  Identities=18%  Similarity=0.261  Sum_probs=134.4

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~  136 (441)
                      +.++-+++||.+.|-+-....                  .....+|.++|.+..|++ ||.-|+|+|.||.|++|.-...
T Consensus        76 d~~~i~s~DGkf~il~k~~rV------------------E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGM  136 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARV------------------ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGM  136 (737)
T ss_pred             ceEEEEcCCceEEEecccchh------------------hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEeccch
Confidence            468888899998887632111                  122347999999999987 7889999999999999974322


Q ss_pred             eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEE
Q 013545          137 RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR  216 (441)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~  216 (441)
                      -.-...+....++++.+.|...  .++...  .+.+.+=-++....+-..+.|.+-|.++.|+|.++ +++||++|-..+
T Consensus       137 LRStl~Q~~~~v~c~~W~p~S~--~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK  211 (737)
T KOG1524|consen  137 LRSTVVQNEESIRCARWAPNSN--SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK  211 (737)
T ss_pred             HHHHHhhcCceeEEEEECCCCC--ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence            1111123345688999998754  344433  35677777766655566789999999999999987 689999999999


Q ss_pred             EEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccc
Q 013545          217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSS  296 (441)
Q Consensus       217 iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (441)
                      +||-.....+...-..+                                 ..+.+++.++ ...+-++.         ..
T Consensus       212 vWD~~G~~Lf~S~~~ey---------------------------------~ITSva~npd-~~~~v~S~---------nt  248 (737)
T KOG1524|consen  212 IWDAQGANLFTSAAEEY---------------------------------AITSVAFNPE-KDYLLWSY---------NT  248 (737)
T ss_pred             eecccCcccccCChhcc---------------------------------ceeeeeeccc-cceeeeee---------ee
Confidence            99964322211100000                                 0011222222 11110110         00


Q ss_pred             cccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545          297 QDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       297 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                      ........+.|..++||+||..++.|...|.+.+
T Consensus       249 ~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  249 ARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            0012235678999999999999999999998764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.32  E-value=9.6e-09  Score=98.15  Aligned_cols=293  Identities=16%  Similarity=0.149  Sum_probs=167.1

Q ss_pred             eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE-eCC
Q 013545           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYD  125 (441)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg-s~D  125 (441)
                      ..+.|+| +++++..++.||.|.++|+.+.+...         .+..       |  .....+++++ ||.+++.+ -.+
T Consensus        40 ~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~---------~i~~-------G--~~~~~i~~s~-DG~~~~v~n~~~   99 (369)
T PF02239_consen   40 AGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVA---------TIKV-------G--GNPRGIAVSP-DGKYVYVANYEP   99 (369)
T ss_dssp             EEEE-TT--SSEEEEEETTSEEEEEETTSSSEEE---------EEE--------S--SEEEEEEE---TTTEEEEEEEET
T ss_pred             eEEEecC-CCCEEEEEcCCCeEEEEECCcccEEE---------EEec-------C--CCcceEEEcC-CCCEEEEEecCC
Confidence            4467885 68899889999999999998765311         1110       1  1223456665 78888755 468


Q ss_pred             CcEEEEECCCCeEEEEEecCC--------eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEE
Q 013545          126 HYVKVWDTNCTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV  196 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v  196 (441)
                      +++.++|.++.+++..++..+        .+..+..++.  ...++++-...+.|-+.|....+.+. ....-.......
T Consensus       100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~--~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~  177 (369)
T PF02239_consen  100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG--RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG  177 (369)
T ss_dssp             TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS--SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred             CceeEeccccccceeecccccccccccCCCceeEEecCC--CCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence            999999999999988776432        2333333443  22345555555788888887765432 222233445678


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      .|+|++++++++...++.|-++|+++++....++....+.                                        
T Consensus       178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~----------------------------------------  217 (369)
T PF02239_consen  178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH----------------------------------------  217 (369)
T ss_dssp             EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE----------------------------------------
T ss_pred             ccCcccceeeecccccceeEEEeeccceEEEEeecccccc----------------------------------------
Confidence            9999999887777778899999998876655443211100                                        


Q ss_pred             ccccCCCCcccccCCCcccccccceeec--cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                           .+...             ...|.  +++...  ...+...++.-....+.+||....+.    ...+.. .+.+.
T Consensus       218 -----~~~~~-------------~~php~~g~vw~~--~~~~~~~~~~ig~~~v~v~d~~~wkv----v~~I~~-~G~gl  272 (369)
T PF02239_consen  218 -----PGPGA-------------NFPHPGFGPVWAT--SGLGYFAIPLIGTDPVSVHDDYAWKV----VKTIPT-QGGGL  272 (369)
T ss_dssp             -----ETTEE-------------EEEETTTEEEEEE--EBSSSSEEEEEE--TTT-STTTBTSE----EEEEE--SSSS-
T ss_pred             -----ccccc-------------cccCCCcceEEee--ccccceecccccCCccccchhhcCeE----EEEEEC-CCCcc
Confidence                 00000             01232  233322  23344443433344677888877553    223333 34446


Q ss_pred             EEEeeCCCcEEEEeC---C--CceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEeecCC--cEEEeCCCCCCCC
Q 013545          355 QLATTQDPAVVFVPC---M--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDR--QILVWCPSRHISD  426 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~---~--~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~s~D~--~i~vW~~~~~~~~  426 (441)
                      -+..+|++..+.+..   .  ..+.++|..+.+...++.... ..+..+.|++||+++....+|+  .|.|+|..+.+..
T Consensus       273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence            778899999888761   1  479999999988887775333 3599999999999877544443  6999999887643

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=3e-10  Score=102.78  Aligned_cols=205  Identities=18%  Similarity=0.195  Sum_probs=142.6

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      .+.|-.+...  ++ .|++|-.+|.+++|..+.+..-. .-..++..               .++..+.-.+.+..++|+
T Consensus       105 ~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g---------------~g~~~~r~~~~~p~Iva~  166 (412)
T KOG3881|consen  105 TKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG---------------PGLYDVRQTDTDPYIVAT  166 (412)
T ss_pred             cccccchhhc--CC-EEEEEecCCcEEEEeccCCccccccceeeecC---------------CceeeeccCCCCCceEec
Confidence            3556666664  34 69999999999999987443100 00001111               123333334445568888


Q ss_pred             EeCC--CcEEEEECCCCeEEEEEecC--------Cee--EEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecC
Q 013545          122 GSYD--HYVKVWDTNCTRVVMNFKMP--------GKV--YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSG  188 (441)
Q Consensus       122 gs~D--~~i~iWd~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~  188 (441)
                      ||..  ..++|||+++.+.+.+.+..        -++  ..+.|.+..+ ...||+++.-+.+++||...+. ++..+.-
T Consensus       167 GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~  245 (412)
T KOG3881|consen  167 GGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDF  245 (412)
T ss_pred             CchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEecc
Confidence            9999  89999999888665544321        122  2333433222 4578999999999999998774 5666666


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      -..+++++...|++. ++++|..-+.+..||+|.++....                                        
T Consensus       246 ~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~----------------------------------------  284 (412)
T KOG3881|consen  246 LENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGC----------------------------------------  284 (412)
T ss_pred             ccCcceeeeecCCCc-EEEEecccchhheecccCceeecc----------------------------------------
Confidence            678899999999997 467888889999999997643211                                        


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                    .+.+-.+.+++|..+|.+.+++++|-|+.|||+|+.+.+
T Consensus       285 ------------------------------~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  285 ------------------------------GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             ------------------------------ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence                                          012335779999999999999999999999999999854

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.30  E-value=1.3e-10  Score=102.84  Aligned_cols=306  Identities=14%  Similarity=0.128  Sum_probs=186.2

Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545          110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (441)
Q Consensus       110 ~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h  189 (441)
                      .|+ ++|+++|++++- .+.|=|.++-+..+.+.+-.++.-+.+..+  +-.+|.+...++.|.+|++...+....+...
T Consensus        15 ~fS-p~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   15 SFS-PCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             eEC-CCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeecc--ceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            344 489999999876 677778777665544444444555555543  3457888899999999999999888888888


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcccc-------CCCCcccccccccCccCC-----cC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG-------RRPPLLKRKSLSAGQNSS-----VK  257 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-----~~  257 (441)
                      .+.+.++.|||+|+.+|.+...|-.|.+|.+.+.++...-.......+       +-..+..+++-.......     ..
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            889999999999988999999999999999988776543222111100       000000000000000000     00


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec-cCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                      .+.....+.+..++..+|++...+-.+..  ++      .+...-|- -.+..+.|+|.+++|+.|+.|+.+|+-|--+-
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~--Le------ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNV--LE------YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecch--hh------heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence            01111223445566666766543321110  00      00011121 24778999999999999999999987542110


Q ss_pred             C-------------ce-------------------------------------------eeeeeeEEeccC------cce
Q 013545          337 R-------------NT-------------------------------------------LVNFETVRLQTS------KPI  354 (441)
Q Consensus       337 ~-------------~~-------------------------------------------~~~~~~~~~~~~------~~~  354 (441)
                      +             +.                                           ...++..+...+      +.-
T Consensus       243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g  322 (447)
T KOG4497|consen  243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG  322 (447)
T ss_pred             eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence            0             00                                           000000010011      112


Q ss_pred             EEEeeCCCcEEEEeCC---CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545          355 QLATTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~~---~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                      .+++++|..++.+-..   ..+-+||+-+.++...|. ...+|....|.|....|+-+-....+..|.++..+..++
T Consensus       323 ~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v  398 (447)
T KOG4497|consen  323 KLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV  398 (447)
T ss_pred             eeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec
Confidence            4677888887777655   378999997766655443 556899999999988877665555689999988665544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.28  E-value=2e-10  Score=102.19  Aligned_cols=222  Identities=16%  Similarity=0.256  Sum_probs=139.4

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEE-CCCCcccCCCCceecc---------c-eeEEee-----------
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYD-VQRATDYEGGGHIAKH---------R-SVFVVD-----------   95 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd-~~~~~~~~~~~~~~~~---------~-~~~~~~-----------   95 (441)
                      .+.||...|+....-|. +.-+++.+.|.++|||- ...+...+...+....         . .++.+.           
T Consensus        19 ~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             hhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            35699999998777654 44699999999999993 2322221110000000         0 001000           


Q ss_pred             ---------cccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE
Q 013545           96 ---------KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG  166 (441)
Q Consensus        96 ---------~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~  166 (441)
                               -+....|...|..+.+.- ....+++++.|..+..--.+.+..+..+.+...     .++...+-.+...|
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-----~t~~~~d~~~~fvG  171 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-----ASALQFDALYAFVG  171 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeecc-----CCCCceeeEEEEec
Confidence                     011237888888777754 467899999998886655666655443332211     11111111133345


Q ss_pred             eCCCcEEEEECCC--CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccc
Q 013545          167 TEDVQVRLCDIAS--GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK  244 (441)
Q Consensus       167 s~d~~I~vwdl~~--~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~  244 (441)
                      ...+.|.+..+..  -.++.++.+|.+.+.++.|.|... +|.||..|..|-+||+--.+-.                  
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~------------------  232 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGT------------------  232 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcce------------------
Confidence            5556666655533  346778999999999999998765 7899999999999998532100                  


Q ss_pred             ccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec
Q 013545          245 RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS  324 (441)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  324 (441)
                                                                          .-...+|...|..+..-+--+.+.|++.
T Consensus       233 ----------------------------------------------------~~el~gh~~kV~~l~~~~~t~~l~S~~e  260 (404)
T KOG1409|consen  233 ----------------------------------------------------AYELQGHNDKVQALSYAQHTRQLISCGE  260 (404)
T ss_pred             ----------------------------------------------------eeeeccchhhhhhhhhhhhheeeeeccC
Confidence                                                                0012356666777776677778999999


Q ss_pred             CCcEEEeeCCCCC
Q 013545          325 DSRIRLWDVESGR  337 (441)
Q Consensus       325 D~~i~~wd~~~~~  337 (441)
                      |+-|.+||+...+
T Consensus       261 dg~i~~w~mn~~r  273 (404)
T KOG1409|consen  261 DGGIVVWNMNVKR  273 (404)
T ss_pred             CCeEEEEecccee
Confidence            9999999987543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=3.6e-09  Score=104.32  Aligned_cols=217  Identities=11%  Similarity=0.069  Sum_probs=131.2

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEE
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLC  175 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vw  175 (441)
                      .|...+....|+| |++.|+..+.   +..|.+||+.+++........+.+....++|++.  .++.+.+.++  .|.+|
T Consensus       199 ~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~  275 (435)
T PRK05137        199 DGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR--KVVMSLSQGGNTDIYTM  275 (435)
T ss_pred             cCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC--EEEEEEecCCCceEEEE
Confidence            4556788888887 7888887764   4689999998887644334455566677888643  3555555555  48888


Q ss_pred             ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      |+++++. ..+..+........|+|++++++.+...+|  .|.+||+..+...+.                         
T Consensus       276 d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-------------------------  329 (435)
T PRK05137        276 DLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-------------------------  329 (435)
T ss_pred             ECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-------------------------
Confidence            9988865 446666666778999999987654444444  455556543211000                         


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---CcEEE
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SRIRL  330 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~~  330 (441)
                                                                     ..+.+.+....|+|||++|+..+.+   ..|.+
T Consensus       330 -----------------------------------------------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~  362 (435)
T PRK05137        330 -----------------------------------------------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGV  362 (435)
T ss_pred             -----------------------------------------------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEE
Confidence                                                           0011224456899999998876543   36888


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-------CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      ||+.++....  +   . .........++||+..++....       ..+.++++..++. ..+. ..+.+...+|||
T Consensus       363 ~d~~~~~~~~--l---t-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        363 MKPDGSGERI--L---T-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             EECCCCceEe--c---c-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence            8886543211  1   0 1112334578899887765432       1345556544433 3333 233455566665

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.27  E-value=2.6e-10  Score=100.67  Aligned_cols=222  Identities=15%  Similarity=0.148  Sum_probs=156.4

Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---EEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC-C
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-A  178 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl-~  178 (441)
                      .+|+|-+|.+ |+..+|.+-..+.|.|+......   ..++++. ...+..+.+.+..   +.|.+++.|..-++|.. .
T Consensus        11 ~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s---nrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen   11 EPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS---NRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             CceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC---CceeEccCCCCccccccCC
Confidence            4688888876 78899999999999999876544   4455543 4567777888754   36889999999999999 4


Q ss_pred             CCc--eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          179 SGA--ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       179 ~~~--~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      .++  +...|.-|...+++|.|+|... .||.||.-..|.+|-.+.....=+                            
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWV----------------------------  137 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWV----------------------------  137 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceeh----------------------------
Confidence            443  4445667889999999999976 589999999999997653210000                            


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                             ...+.+.+.+.|++++|+|++-++++||.|+.+|++..-- 
T Consensus       138 ---------------------------------------sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI-  177 (361)
T KOG1523|consen  138 ---------------------------------------SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI-  177 (361)
T ss_pred             ---------------------------------------hhhhCCccccceeeeeccCCcceecccccCcceeEEEEee-
Confidence                                                   0000123456799999999999999999999999996421 


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL  416 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~  416 (441)
                             ..+......      .|=+..             +-=|.+..++....++|..+.|+|+|..|+=.+.|.++.
T Consensus       178 -------K~Vdekpap------~pWgsk-------------~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~  231 (361)
T KOG1523|consen  178 -------KGVDEKPAP------TPWGSK-------------MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS  231 (361)
T ss_pred             -------eccccCCCC------CCCccC-------------CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence                   111100000      000000             001233445555678899999999999999999999999


Q ss_pred             EeCCCCCC
Q 013545          417 VWCPSRHI  424 (441)
Q Consensus       417 vW~~~~~~  424 (441)
                      +=|...+.
T Consensus       232 ~~da~~p~  239 (361)
T KOG1523|consen  232 FVDAAGPS  239 (361)
T ss_pred             EeecCCCc
Confidence            88887664

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.26  E-value=5.6e-09  Score=92.28  Aligned_cols=159  Identities=14%  Similarity=0.250  Sum_probs=110.3

Q ss_pred             ccceeEEEEeeCCCCEEEEEeCCCcEEEEECC-CCeEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN-CTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                      ..+|.++...+   ++++.. ..++|.+|... +.+.++.+.... +---+++.|......+..=|-.-|+|+|-|+...
T Consensus        94 ~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   94 NSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             ccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            34676776643   456554 56799999876 444555443211 1112334443322223333455689999999776


Q ss_pred             ce--eeeecCCCCCeEEEEEecCCCcEEEEeecCCc-EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          181 AI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       181 ~~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~-I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      +.  ...+..|.+.|.|++.+-+|. ++||+|..|+ |||||.+++..+..+.-                          
T Consensus       170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR--------------------------  222 (346)
T KOG2111|consen  170 KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR--------------------------  222 (346)
T ss_pred             CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec--------------------------
Confidence            55  467889999999999999997 6899999997 89999998765443210                          


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                                        +         .....|.+|+||||..+|+++|.-|||+++.++.
T Consensus       223 ----------------------------------G---------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  223 ----------------------------------G---------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ----------------------------------C---------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                                              0         0113489999999999999999999999998875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.25  E-value=1.1e-08  Score=97.69  Aligned_cols=274  Identities=18%  Similarity=0.113  Sum_probs=158.9

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR  137 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~  137 (441)
                      ++++-..++.|.+.|..+.+...            .+..    +  +++.....+++|+.+++.++.|+.|.++|+.+.+
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~------------~i~~----~--~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~   69 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVA------------RIPT----G--GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK   69 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEE------------EEE-----S--TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEecCCCEEEEEECCCCeEEE------------EEcC----C--CCceeEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence            45778889999999987654210            1110    1  1122233345589999999999999999999999


Q ss_pred             EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC-------CCCeEEEEEecCCCcEEEEee
Q 013545          138 VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-------RDGIMTVEWSTSSEWILVTGG  210 (441)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h-------~~~v~~v~fsp~~~~~l~s~s  210 (441)
                      .+.+++.......+++++++.  .++++....+.+.++|.++.+.++.+...       ...+.++..+|..+.+ +..-
T Consensus        70 ~v~~i~~G~~~~~i~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f-Vv~l  146 (369)
T PF02239_consen   70 VVATIKVGGNPRGIAVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF-VVNL  146 (369)
T ss_dssp             EEEEEE-SSEEEEEEE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE-EEEE
T ss_pred             EEEEEecCCCcceEEEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE-EEEE
Confidence            999999888888899998653  45556667899999999999988877532       3467788888887743 4444


Q ss_pred             cC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccccc
Q 013545          211 CD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL  289 (441)
Q Consensus       211 ~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (441)
                      .| +.|-+-|....+.+..-                                                            
T Consensus       147 kd~~~I~vVdy~d~~~~~~~------------------------------------------------------------  166 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVT------------------------------------------------------------  166 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEE------------------------------------------------------------
T ss_pred             ccCCeEEEEEecccccccee------------------------------------------------------------
Confidence            44 55544454432111000                                                            


Q ss_pred             CCCcccccccceeeccCeEEEEEccCCCEEEE-eecCCcEEEeeCCCCCceeeeeeeEEeccCcce----------EEEe
Q 013545          290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI----------QLAT  358 (441)
Q Consensus       290 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----------~~~~  358 (441)
                                ............|+|+++|++. .-....|-++|..+++... ....-...+..+.          -.+.
T Consensus       167 ----------~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~-~i~~g~~p~~~~~~~~php~~g~vw~~  235 (369)
T PF02239_consen  167 ----------TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA-LIDTGKKPHPGPGANFPHPGFGPVWAT  235 (369)
T ss_dssp             ----------EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE-EEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred             ----------eecccccccccccCcccceeeecccccceeEEEeeccceEEE-EeeccccccccccccccCCCcceEEee
Confidence                      0001122456789999998655 4566689999988765321 1111000011111          1222


Q ss_pred             eCCCcEE-EEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe----ecCCcEEEeCCCCCC
Q 013545          359 TQDPAVV-FVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG----GNDRQILVWCPSRHI  424 (441)
Q Consensus       359 ~~~~~~~-~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~----s~D~~i~vW~~~~~~  424 (441)
                      ...+... ...+...+.+|+..+++.++++.....+ .-+.-+||+++|...    ....+|.|+|..+-+
T Consensus       236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~  305 (369)
T PF02239_consen  236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK  305 (369)
T ss_dssp             EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred             ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence            2222222 2233345667888889999999988777 777889999999987    445789999998764

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=3e-09  Score=104.54  Aligned_cols=206  Identities=14%  Similarity=0.154  Sum_probs=125.2

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      ..|.+||.............+.+....++|++.   .|+..+.   ...|.+||+.+++.. .+....+.+.+.+|+|++
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCC
Confidence            467777774333222223445567778888653   4444432   246999999988754 333344556789999999


Q ss_pred             CcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          203 EWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      +.++++.+.++..+||.+... +....                                                     
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-----------------------------------------------------  278 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSGLRR-----------------------------------------------------  278 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCcEE-----------------------------------------------------
Confidence            877667788888888875421 00000                                                     


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCcEEEeeC--CCCCceeeeeeeEEeccCcceEEEe
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDV--ESGRNTLVNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~  358 (441)
                                        ...+.+......|+|||++|+..+. ++...+|.+  .+++....     ...........+
T Consensus       279 ------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-----t~~g~~~~~~~~  335 (427)
T PRK02889        279 ------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-----TFTGSYNTSPRI  335 (427)
T ss_pred             ------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-----ecCCCCcCceEE
Confidence                              0011122345679999998876554 466667654  44332111     111122234678


Q ss_pred             eCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          359 TQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       359 ~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      +|++..++..+.    ..+.+||+.+++... +..+ .......|+|||++|+.++.++
T Consensus       336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence            999988766543    258899998876543 3322 2346789999999988766544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.20  E-value=1.7e-09  Score=93.83  Aligned_cols=75  Identities=25%  Similarity=0.532  Sum_probs=54.9

Q ss_pred             CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeec---CCcEEEEEcC
Q 013545          145 PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC---DGAIRFWDIR  221 (441)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~---Dg~I~iWD~~  221 (441)
                      .+++.+++++|.+. ..+++.|..+..|.+||++ ++.+..+.  ...+..+.|+|+|+++ +.++.   .|.|.+||++
T Consensus        59 ~~~I~~~~WsP~g~-~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l-~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   59 EGPIHDVAWSPNGN-EFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFL-VLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCceEEEEECcCCC-EEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEE-EEEEccCCCcEEEEEECC
Confidence            45699999999753 2334455567899999997 66666664  4567899999999864 55543   4679999998


Q ss_pred             CCc
Q 013545          222 RAG  224 (441)
Q Consensus       222 ~~~  224 (441)
                      +.+
T Consensus       134 ~~~  136 (194)
T PF08662_consen  134 KKK  136 (194)
T ss_pred             CCE
Confidence            544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.17  E-value=4.7e-11  Score=110.02  Aligned_cols=110  Identities=13%  Similarity=0.172  Sum_probs=86.2

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      .+.+.. +|.+++-|+.-|-|-.+|..++.+...+.....+.++.|-..   ..++|++- ...++|||-. |..+..++
T Consensus       134 ~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHn---eq~~AVAQ-K~y~yvYD~~-GtElHClk  207 (545)
T KOG1272|consen  134 HLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHN---EQFFAVAQ-KKYVYVYDNN-GTELHCLK  207 (545)
T ss_pred             eeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcc---hHHHHhhh-hceEEEecCC-CcEEeehh
Confidence            345554 788999999999999999999998888887777887777653   34677764 5679999964 55556666


Q ss_pred             CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce
Q 013545          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC  225 (441)
Q Consensus       188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~  225 (441)
                      .| ..|..+.|.|.. ++|++++..|.++.-|+..|+.
T Consensus       208 ~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gkl  243 (545)
T KOG1272|consen  208 RH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKL  243 (545)
T ss_pred             hc-Cchhhhcccchh-heeeecccCCceEEEeechhhh
Confidence            54 568899999985 6899999999999999987654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=5.4e-09  Score=93.89  Aligned_cols=236  Identities=19%  Similarity=0.284  Sum_probs=150.6

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC--
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG--  180 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~--  180 (441)
                      .+.-++|++ .-.-||.+..|.+||+||-+. ++...++.  ...+.++++.|...+  -|+.|+. +-|.+|.....  
T Consensus       100 dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas--elavgCr-~gIciW~~s~tln  174 (445)
T KOG2139|consen  100 DLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS--ELAVGCR-AGICIWSDSRTLN  174 (445)
T ss_pred             ceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc--eeeeeec-ceeEEEEcCcccc
Confidence            344566765 344578999999999999766 33333333  345788899998654  5666664 44899986432  


Q ss_pred             --c--------eeee--ecCCCCCeEEEEEecCCCcEEEEee-cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccc
Q 013545          181 --A--------ISQT--LSGHRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKS  247 (441)
Q Consensus       181 --~--------~~~~--l~~h~~~v~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (441)
                        .        ..+.  -+|| ..|+++.|.+|+. .+++++ .|..|+|||..++.+....-                 
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~-----------------  235 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIP-----------------  235 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccc-----------------
Confidence              1        1112  2355 6799999999987 567776 46899999998764322110                 


Q ss_pred             cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCc
Q 013545          248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  327 (441)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  327 (441)
                                                                            --.+.+.-|.|||||.+|.+++-|+.
T Consensus       236 ------------------------------------------------------~glgg~slLkwSPdgd~lfaAt~dav  261 (445)
T KOG2139|consen  236 ------------------------------------------------------KGLGGFSLLKWSPDGDVLFAATCDAV  261 (445)
T ss_pred             ------------------------------------------------------cCCCceeeEEEcCCCCEEEEecccce
Confidence                                                                  00134667899999999999999999


Q ss_pred             EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccC-C--------------ceEee------
Q 013545          328 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS-G--------------KTCLT------  386 (441)
Q Consensus       328 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-~--------------~~~~~------  386 (441)
                      .++|+.....-    .+.-....+......++|+|..++.++.+.-+++.+.- +              .+...      
T Consensus       262 frlw~e~q~wt----~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti  337 (445)
T KOG2139|consen  262 FRLWQENQSWT----KERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI  337 (445)
T ss_pred             eeeehhcccce----ecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence            99997654221    01111223445567788999888777666555554311 0              00111      


Q ss_pred             ecc---cccceEEEEEcCCCCeEEEeec--C------CcEEEeCCCC
Q 013545          387 FRG---HYEYVNCCCFSSQDQELYTGGN--D------RQILVWCPSR  422 (441)
Q Consensus       387 l~g---h~~~v~~v~fspd~~~l~s~s~--D------~~i~vW~~~~  422 (441)
                      ..+   --++..+++|.|.|.+||+-=.  +      ..|.+|+...
T Consensus       338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            111   1367899999999999997422  2      3467776543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.13  E-value=3.6e-08  Score=96.91  Aligned_cols=218  Identities=13%  Similarity=0.098  Sum_probs=129.7

Q ss_pred             CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      ...|.++|...............+....+++++.   .|+....   ...|++||+++++... +..+.+.+.+++|+|+
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~---~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD  244 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQ---KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD  244 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCCCCC---EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence            3457788875444333233344466677777643   4444432   2479999999886533 3345566778999999


Q ss_pred             CCcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          202 SEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       202 ~~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      ++.++++.+.++  .|.+||+.++.....                                                   
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l---------------------------------------------------  273 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRL---------------------------------------------------  273 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEEEC---------------------------------------------------
Confidence            987766666555  477777764321100                                                   


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC--cEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                           ..+.......+|+|||+.|+..+. ++  .|.++|+.+++...     +..........
T Consensus       274 ---------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-----l~~~~~~~~~~  327 (417)
T TIGR02800       274 ---------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-----LTFRGGYNASP  327 (417)
T ss_pred             ---------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----eecCCCCccCe
Confidence                                 001112234579999998876554 33  57778887654221     11122233456


Q ss_pred             EeeCCCcEEEEeCCC----ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC---cEEEeCCCCCCC
Q 013545          357 ATTQDPAVVFVPCMT----AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR---QILVWCPSRHIS  425 (441)
Q Consensus       357 ~~~~~~~~~~~~~~~----~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~---~i~vW~~~~~~~  425 (441)
                      .+++++..++.....    .+.++|+.++... .+..+ ......+|+|||++|+.++.++   .+.+.+......
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~  401 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR  401 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee
Confidence            788998877765442    5788888775543 33322 2245668999999988766654   355555544433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.12  E-value=7.1e-07  Score=85.19  Aligned_cols=250  Identities=14%  Similarity=0.201  Sum_probs=148.4

Q ss_pred             EEEEeeCCCCEEEEEeC----CCcEEEEECCCC--eE--EEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          108 SAIWYPVDTGLFVTGSY----DHYVKVWDTNCT--RV--VMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~----D~~i~iWd~~~~--~~--~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      .+.+++ ++++|.+...    ++.|..|++...  ++  +...... .....+++.++  +..++++...++.|.++++.
T Consensus        41 ~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   41 WLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             CEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEEEcc
Confidence            355555 6778877766    578999887653  33  3333322 22334555554  33455555578999999998


Q ss_pred             C-Cceeee---ec----------CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce-eeEeccCCccccCCCCcc
Q 013545          179 S-GAISQT---LS----------GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLL  243 (441)
Q Consensus       179 ~-~~~~~~---l~----------~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~  243 (441)
                      . |.+...   +.          .-.....++.|+|++++++++.-....|.+|++..... +.....            
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~------------  185 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS------------  185 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE------------
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec------------
Confidence            7 443222   11          12344679999999998776655556899999865320 100000            


Q ss_pred             cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEe
Q 013545          244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSA  322 (441)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sg  322 (441)
                                                                 ..+            ......+.++|+|+++++ ++.
T Consensus       186 -------------------------------------------~~~------------~~G~GPRh~~f~pdg~~~Yv~~  210 (345)
T PF10282_consen  186 -------------------------------------------IKV------------PPGSGPRHLAFSPDGKYAYVVN  210 (345)
T ss_dssp             -------------------------------------------EEC------------STTSSEEEEEE-TTSSEEEEEE
T ss_pred             -------------------------------------------ccc------------ccCCCCcEEEEcCCcCEEEEec
Confidence                                                       000            011236789999999876 555


Q ss_pred             ecCCcEEEeeCCCCCceeeeeeeEEec------cCcceEEEeeCCCcEEEEeCC--CceEEEEcc--CCce--Eeeeccc
Q 013545          323 GSDSRIRLWDVESGRNTLVNFETVRLQ------TSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SGKT--CLTFRGH  390 (441)
Q Consensus       323 s~D~~i~~wd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~--~~~~--~~~l~gh  390 (441)
                      -.+++|.++++......+.........      ...+..+.+++|++.+++...  ..+-+|++.  ++++  +..+...
T Consensus       211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~  290 (345)
T PF10282_consen  211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG  290 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred             CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence            677889999988332222222222211      114567889999999988755  578899983  3433  2334433


Q ss_pred             ccceEEEEEcCCCCeEEEee-cCCcEEEeCC--CCCCCCC
Q 013545          391 YEYVNCCCFSSQDQELYTGG-NDRQILVWCP--SRHISDG  427 (441)
Q Consensus       391 ~~~v~~v~fspd~~~l~s~s-~D~~i~vW~~--~~~~~~~  427 (441)
                      ......++|+|||++|+.+. .++.|.+|++  .++++..
T Consensus       291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            44579999999999988765 4568888855  5666543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=3.9e-08  Score=86.17  Aligned_cols=244  Identities=16%  Similarity=0.216  Sum_probs=151.6

Q ss_pred             eeEEEEe--eCCCC-EEEEEeCCCcEEEEECCCCeEEEEEec-CC-----e-eEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545          106 ISSAIWY--PVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKM-PG-----K-VYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus       106 V~~~~~~--~~~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~-----~-~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      +..+.|.  +.+++ .++-+-.+|.|.++..........+.. .+     . ..++.+++.+   .-++++-.+|.+.+-
T Consensus        72 ~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~---~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   72 EFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG---TKIFVSDSRGSISGV  148 (339)
T ss_pred             cceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC---ceEEEEcCCCcEEEE
Confidence            4444442  23444 455666778888887543322222221 11     1 2233344432   347778888999877


Q ss_pred             ECCCCcee--eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          176 DIASGAIS--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       176 dl~~~~~~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      +.....+.  +..+.|.-+.+...|+...+.++.+||.|+.+..||+|..+.+ .+                        
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~------------------------  203 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IW------------------------  203 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-ee------------------------
Confidence            76655443  4788999999999999877778999999999999999843210 00                        


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEee
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWD  332 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd  332 (441)
                                                                  ...+.|..-|.++.-+| +..+|+||+.|..|++||
T Consensus       204 --------------------------------------------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D  239 (339)
T KOG0280|consen  204 --------------------------------------------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD  239 (339)
T ss_pred             --------------------------------------------ecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence                                                        00134666788888775 678999999999999999


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcE-EEEeCC-CceEEEEccCC--c---eEeeecccccceEEEEEcCCCCe
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAV-VFVPCM-TAVKAFDIWSG--K---TCLTFRGHYEYVNCCCFSSQDQE  405 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~wd~~~~--~---~~~~l~gh~~~v~~v~fspd~~~  405 (441)
                      .+.....+  +++  ...++..++...|.-.. ++.+|. .+.++.++..+  +   .+.....|.+-...-.|..-...
T Consensus       240 tRnm~kPl--~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~  315 (339)
T KOG0280|consen  240 TRNMGKPL--FKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSF  315 (339)
T ss_pred             hhcccCcc--ccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccce
Confidence            98533221  111  11244455555554332 233444 57778777553  2   34556677776666666444456


Q ss_pred             EEEeec-CCcEE-EeCCCCCCC
Q 013545          406 LYTGGN-DRQIL-VWCPSRHIS  425 (441)
Q Consensus       406 l~s~s~-D~~i~-vW~~~~~~~  425 (441)
                      |+||+- |+.++ +|-.-++..
T Consensus       316 lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  316 LATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             eeeeeccccceeeeeeeccCCc
Confidence            888764 77756 897666543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.11  E-value=3.2e-08  Score=97.31  Aligned_cols=186  Identities=18%  Similarity=0.209  Sum_probs=114.1

Q ss_pred             cccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--CcEEEEE
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--VQVRLCD  176 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--~~I~vwd  176 (441)
                      +...+....|+| |+++|+.++.+   ..|.+||+.++.........+......+++++.  .++.+.+.+  ..|++||
T Consensus       188 ~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       188 SREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS--KLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             CCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC--EEEEEECCCCCccEEEEE
Confidence            334466667776 78888877654   479999999886554444555556677777643  344444444  3699999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      +.+++. ..+..+........|+|+++++++++..++.  |.++|+..++....                          
T Consensus       265 ~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l--------------------------  317 (417)
T TIGR02800       265 LDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL--------------------------  317 (417)
T ss_pred             CCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe--------------------------
Confidence            988764 3444455555678899999876555544454  44445443211000                          


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC---cEEEe
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS---RIRLW  331 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~---~i~~w  331 (441)
                                                                    ..+...+..+.|+|||++|+.++.++   +|.+|
T Consensus       318 ----------------------------------------------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       318 ----------------------------------------------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             ----------------------------------------------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence                                                          00112345678999999999888776   78899


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC  369 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (441)
                      |+.++....  +.    .........+++++..++...
T Consensus       352 d~~~~~~~~--l~----~~~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       352 DLDGGGERV--LT----DTGLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             eCCCCCeEE--cc----CCCCCCCceECCCCCEEEEEE
Confidence            988754221  11    111122346788887766543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=5e-08  Score=96.28  Aligned_cols=216  Identities=18%  Similarity=0.218  Sum_probs=128.8

Q ss_pred             ccceeEEEEeeCCCCEEEEEeCC-C--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEEC
Q 013545          103 KYAISSAIWYPVDTGLFVTGSYD-H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCDI  177 (441)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~sgs~D-~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwdl  177 (441)
                      ...+.+..|+| |++.|+..+.+ +  .|.+||+.+++........+......++|++.  .++.+.+.++  .|.++|+
T Consensus       217 ~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        217 PEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK--KLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             CCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC--EEEEEEeCCCCeEEEEEEC
Confidence            34566677887 78888766543 3  58888998876543333344444567787643  3445555566  4888899


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEE--EcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW--DIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iW--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                      ++++. ..+..+........|+|+++++++++..++...+|  |+.+++..+..                          
T Consensus       294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt--------------------------  346 (448)
T PRK04792        294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT--------------------------  346 (448)
T ss_pred             CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe--------------------------
Confidence            88764 34555556667889999999876666556655555  44332210000                          


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC--cEEEee
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWD  332 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd  332 (441)
                                                                  ..+  ......+|+|||++|+..+. ++  .|.++|
T Consensus       347 --------------------------------------------~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d  380 (448)
T PRK04792        347 --------------------------------------------FEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQD  380 (448)
T ss_pred             --------------------------------------------cCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence                                                        000  01223579999998876654 34  455568


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      +.+++....  .    .........+++++..++....    ..+.+++. +|.....+..+.+.+...+|||
T Consensus       381 l~~g~~~~l--t----~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        381 LETGAMQVL--T----STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCCCeEEc--c----CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            777653211  1    0111123468899887766433    13555665 5666666777777778888887

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.10  E-value=1.6e-09  Score=101.82  Aligned_cols=177  Identities=18%  Similarity=0.273  Sum_probs=126.0

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CCCceeccceeEEe---ecccc-------cCcccceeEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GGGHIAKHRSVFVV---DKQHE-------HGHKYAISSAIW  111 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~---~~~~~-------~~h~~~V~~~~~  111 (441)
                      +..|+|+.|-|.+...++.+-.+|.+.+||....-... ...........+.+   .....       .--++.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            37899999987666677788889999999863211000 00000000000100   00000       011236777788


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545          112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       112 ~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                      ++ |+.+||+.|.|+.+||+|..+.+++..++ .-|...+++|+|+++   +|++|+.|.-|.||.+...+.+..-+||.
T Consensus       299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK---yIvtGGEDDLVtVwSf~erRVVARGqGHk  374 (636)
T KOG2394|consen  299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK---YIVTGGEDDLVTVWSFEERRVVARGQGHK  374 (636)
T ss_pred             cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc---EEEecCCcceEEEEEeccceEEEeccccc
Confidence            87 99999999999999999998877654433 345678999999764   89999999999999999999999999999


Q ss_pred             CCeEEEEEecC-----------------------------------------------CCcEEEEeecCCcEEEEEcCCC
Q 013545          191 DGIMTVEWSTS-----------------------------------------------SEWILVTGGCDGAIRFWDIRRA  223 (441)
Q Consensus       191 ~~v~~v~fsp~-----------------------------------------------~~~~l~s~s~Dg~I~iWD~~~~  223 (441)
                      +.|..|+|.|-                                               -.|.|.|.+.|-.+.+||+...
T Consensus       375 SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  375 SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence            99999999820                                               1346788899999999998753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=1.4e-08  Score=91.27  Aligned_cols=211  Identities=19%  Similarity=0.263  Sum_probs=132.2

Q ss_pred             eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee
Q 013545          148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF  226 (441)
Q Consensus       148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~  226 (441)
                      +..+++++.   -..+|++..|..|++||-+. +....++ .....|+|++|-|.+...|+.|. .+-|.||....-...
T Consensus       101 lr~~aWhqH---~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~  175 (445)
T KOG2139|consen  101 LRGVAWHQH---IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNA  175 (445)
T ss_pred             eeeEeechh---hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccc
Confidence            455666663   34678888999999999877 3333343 34467999999999876666655 467999976421000


Q ss_pred             eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC
Q 013545          227 RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA  306 (441)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  306 (441)
                           ....          ...                                  ..     .+.   ..-...+| .+
T Consensus       176 -----~r~~----------~~~----------------------------------s~-----~~~---qvl~~pgh-~p  197 (445)
T KOG2139|consen  176 -----NRNI----------RMM----------------------------------ST-----HHL---QVLQDPGH-NP  197 (445)
T ss_pred             -----cccc----------ccc----------------------------------cc-----cch---hheeCCCC-ce
Confidence                 0000          000                                  00     000   00011244 57


Q ss_pred             eEEEEEccCCCEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEc---cCC
Q 013545          307 VTGLKVTEDGMYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDI---WSG  381 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~---~~~  381 (441)
                      |++|.|.+||..+++++.+ ..|.|||+.++.....    .....+....+.++||+..++.+.. ...++|+.   |+.
T Consensus       198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL----~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~  273 (445)
T KOG2139|consen  198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL----IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK  273 (445)
T ss_pred             eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc----cccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee
Confidence            9999999999999998765 5799999998764321    1223445557889999999988765 56789954   433


Q ss_pred             ceEeeecccccceEEEEEcCCCCeEE-EeecCCcEEEeCCCCCCCCCccC
Q 013545          382 KTCLTFRGHYEYVNCCCFSSQDQELY-TGGNDRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       382 ~~~~~l~gh~~~v~~v~fspd~~~l~-s~s~D~~i~vW~~~~~~~~~~~~  430 (441)
                      +.-....   +.|..-.|+|+|++|+ +++..  -+++..+-.-..++..
T Consensus       274 erw~lgs---grvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~  318 (445)
T KOG2139|consen  274 ERWILGS---GRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFL  318 (445)
T ss_pred             cceeccC---CceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCcccc
Confidence            3323333   4899999999999866 44333  3556555444443433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.08  E-value=6.9e-10  Score=96.92  Aligned_cols=163  Identities=21%  Similarity=0.324  Sum_probs=118.1

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      ..+|.-+.+.+.|+..+.+.+.||+.|+.+.-||+.-....           +    .++.+-|..+|.++..+|+.+.+
T Consensus       161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-----------i----~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-----------I----WHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-----------e----eecceeeecceEEEecCCCCCce
Confidence            35799999999999777789999999999999998732211           1    12234688899999999999999


Q ss_pred             EEEEeCCCcEEEEECC-CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-----eeeeecCCCCC
Q 013545          119 FVTGSYDHYVKVWDTN-CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-----ISQTLSGHRDG  192 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-----~~~~l~~h~~~  192 (441)
                      ++||++|..|++||.+ -++++..-+..|.|.++..+|... +.+|+++-. +-.+|.+.+.+.     .....+.|.+.
T Consensus       226 I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~-~~lL~~CMh-~G~ki~~~~~~~~e~~~~~~s~~~hdSl  303 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF-HRLLAACMH-NGAKILDSSDKVLEFQIVLPSDKIHDSL  303 (339)
T ss_pred             EEEeccccceeeeehhcccCccccCccccceEEEEecchhh-hHHHHHHHh-cCceEEEecccccchheeeeccccccce
Confidence            9999999999999998 467777777788999999888654 334554433 447777776543     23445678777


Q ss_pred             eEEEEEecCCCcEEEEeec-CCcEE-EEE
Q 013545          193 IMTVEWSTSSEWILVTGGC-DGAIR-FWD  219 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~-Dg~I~-iWD  219 (441)
                      +....|... ..+|+||+. |+.|+ +|-
T Consensus       304 ~YG~DWd~~-~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  304 CYGGDWDSK-DSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             eeccccccc-cceeeeeeccccceeeeee
Confidence            777777333 246788763 55534 563

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.08  E-value=2.3e-07  Score=100.08  Aligned_cols=256  Identities=15%  Similarity=0.208  Sum_probs=154.4

Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------------eeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------------KVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus       109 ~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      +++.+.++.++++-+..+.|++||.. +..+..+...+               ....+++.+.  ++.+.++-..++.|+
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHALR  649 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCceEE
Confidence            45555456788888889999999985 44443332211               1133444432  233444445567899


Q ss_pred             EEECCCCceeeeecC--C---------------CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccc
Q 013545          174 LCDIASGAISQTLSG--H---------------RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (441)
Q Consensus       174 vwdl~~~~~~~~l~~--h---------------~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~  236 (441)
                      ++|+.++.. .++.+  .               -.....++|+|++..++++.+.++.|++||...+... .+...    
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~----  723 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGD----  723 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecC----
Confidence            999987653 33321  0               1134689999965567888888999999998765321 11000    


Q ss_pred             cCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC
Q 013545          237 GRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG  316 (441)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  316 (441)
                                                     +.  .....      +...             ..........|+++|++
T Consensus       724 -------------------------------G~--~~~~~------g~~~-------------~~~~~~~P~GIavspdG  751 (1057)
T PLN02919        724 -------------------------------GY--ERNLN------GSSG-------------TSTSFAQPSGISLSPDL  751 (1057)
T ss_pred             -------------------------------Cc--cccCC------CCcc-------------ccccccCccEEEEeCCC
Confidence                                           00  00000      0000             00111235679999998


Q ss_pred             C-EEEEeecCCcEEEeeCCCCCceeeee-----ee--EE----------eccCcceEEEeeCCCcEEEEeCC-CceEEEE
Q 013545          317 M-YLLSAGSDSRIRLWDVESGRNTLVNF-----ET--VR----------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFD  377 (441)
Q Consensus       317 ~-~l~sgs~D~~i~~wd~~~~~~~~~~~-----~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd  377 (441)
                      . .+++.+.+++|++||+.++......-     ..  ..          .....|..+++.+++.+.++... ..+++||
T Consensus       752 ~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD  831 (1057)
T PLN02919        752 KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD  831 (1057)
T ss_pred             CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence            7 56677888999999998764321100     00  00          01123556778888876555443 6899999


Q ss_pred             ccCCceEeee-------------cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          378 IWSGKTCLTF-------------RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       378 ~~~~~~~~~l-------------~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      ..++......             .++-.....|+++++|+.+++-+.++.|++|++.++..
T Consensus       832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            8776554221             12223578999999999999989999999999988764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=5.1e-07  Score=84.65  Aligned_cols=270  Identities=12%  Similarity=0.073  Sum_probs=157.7

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe---------CCCcEEEEECCCCceeeeecCCC------
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---------EDVQVRLCDIASGAISQTLSGHR------  190 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s---------~d~~I~vwdl~~~~~~~~l~~h~------  190 (441)
                      ++|.+.|..+++.+.++.......-. ++++..  .+.++.+         .+..|.+||+++.+.+..+.--.      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGS--FFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCC--EEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            79999999999998888764333333 777643  3334444         57889999999999988776321      


Q ss_pred             -CCeEEEEEecCCCcEEEEe-ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          191 -DGIMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       191 -~~v~~v~fsp~~~~~l~s~-s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                       .....++++|+|++++++- +.+..|-+.|+.+++.+..+.....     ...+     .      ...........++
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-----~~vy-----~------t~e~~~~~~~~Dg  167 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-----YHIF-----P------TANDTFFMHCRDG  167 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-----cEEE-----E------ecCCccEEEeecC
Confidence             2234789999999776554 3389999999998876665432100     0000     0      0000000001111


Q ss_pred             CCccccCcccccCCCCcccccCCCcc--cccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCcee-eeee
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGML--SSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTL-VNFE  344 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~~~-~~~~  344 (441)
                      .......+.    .+...  ......  ......  ...+    .|++ ||+++..... |+|.+.|+....... ....
T Consensus       168 ~~~~v~~d~----~g~~~--~~~~~vf~~~~~~v--~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       168 SLAKVGYGT----KGNPK--IKPTEVFHPEDEYL--INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             ceEEEEecC----CCceE--EeeeeeecCCcccc--ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceee
Confidence            111100000    00000  000000  000000  0111    3455 7887765555 999999976543211 1111


Q ss_pred             eE-------EeccCcceEEEeeCCCcEEEEeC-----------CCceEEEEccCCceEeeecccccceEEEEEcCCCC-e
Q 013545          345 TV-------RLQTSKPIQLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-E  405 (441)
Q Consensus       345 ~~-------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~  405 (441)
                      ..       .........+++++++..+++..           ...+-++|..+++.+..+.. ...++.++||||++ +
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPL  313 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeE
Confidence            11       11223333488899998888742           14688999999998887763 24699999999999 8


Q ss_pred             EEEee-cCCcEEEeCCCCCCCCCc
Q 013545          406 LYTGG-NDRQILVWCPSRHISDGV  428 (441)
Q Consensus       406 l~s~s-~D~~i~vW~~~~~~~~~~  428 (441)
                      |++.. .+++|.+.|..+++....
T Consensus       314 lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             EEEeCCCCCcEEEEECcCCeEEee
Confidence            87655 678899999999875443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=1.1e-07  Score=93.93  Aligned_cols=217  Identities=15%  Similarity=0.122  Sum_probs=126.8

Q ss_pred             cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~  204 (441)
                      .|.++|...+...........+....++|++.  .++.+...+  ..|.+||+.+++... +....+.+....|+|+++.
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence            47777876554433333445567778888653  333333222  469999999886533 3333444567899999987


Q ss_pred             EEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          205 ILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       205 ~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      ++++.+.++  .|.+||+.++.....                                                      
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------------------------------  282 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRV------------------------------------------------------  282 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEc------------------------------------------------------
Confidence            766666666  466677765321110                                                      


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC--cEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                        ..+........|+|||+.|+..+. ++  .|.++|+.+++....     ...........++
T Consensus       283 ------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-----t~~~~~~~~~~~S  339 (430)
T PRK00178        283 ------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-----TFVGNYNARPRLS  339 (430)
T ss_pred             ------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-----ecCCCCccceEEC
Confidence                              001112334679999998765543 33  577778877653211     1111122335678


Q ss_pred             CCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC-C--cEEEeCCCCCCC
Q 013545          360 QDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND-R--QILVWCPSRHIS  425 (441)
Q Consensus       360 ~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D-~--~i~vW~~~~~~~  425 (441)
                      +++..++....    ..+.++|+.+++.. .+. +........|+|||++|+-.+.+ +  .|.+.+.+....
T Consensus       340 pdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        340 ADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             CCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            89888766533    24778888877643 222 22223356899999998865543 3  366666654433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.05  E-value=3.2e-08  Score=88.43  Aligned_cols=296  Identities=17%  Similarity=0.271  Sum_probs=170.9

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCc--ccCCCCceeccceeEEeeccccc--CcccceeEEEEeeC-CCC
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHIAKHRSVFVVDKQHEH--GHKYAISSAIWYPV-DTG  117 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~~~~~~~-~~~  117 (441)
                      ..-|.++.|. ..|.+|+||..+|.|.++.-....  ++.-.+..+.|.+-+    .+++  .-...|..+.|.++ +..
T Consensus        25 adiis~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF----DYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   25 ADIISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF----DYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             hcceeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc----chhhhhhhhhhhhhceecCCCCcc
Confidence            3678899998 468899999999999999653221  110000011111100    0110  11234666677653 345


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEE-EEecC-----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCC
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVM-NFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHR  190 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~  190 (441)
                      .++....|++|++|.+....... .+..+     +.+.++..-         ..+..|-.+..      .+.+.+ ..|+
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p---------~~~~~~~~vea------~prRv~aNaHt  164 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP---------VEGRHDLEVEA------SPRRVYANAHT  164 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeece---------eeccccceeee------eeeeeccccce
Confidence            67777899999999886433211 11111     111111110         01111111100      122333 4699


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      .-|.+++++.|.+. ++| +.|=.|.+|++.- ..++...+..                                     
T Consensus       165 yhiNSIS~NsD~Et-~lS-ADdLRINLWnlei~d~sFnIVDIK-------------------------------------  205 (433)
T KOG1354|consen  165 YHINSISVNSDKET-FLS-ADDLRINLWNLEIIDQSFNIVDIK-------------------------------------  205 (433)
T ss_pred             eEeeeeeecCccce-Eee-ccceeeeeccccccCCceeEEEcc-------------------------------------
Confidence            99999999999885 555 4688999999862 2222222110                                     


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCce---eeeeee
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNT---LVNFET  345 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~---~~~~~~  345 (441)
                                           |.      ....-..-|++..|||. .+.++-.|.-|+||+-|++.....   ...++.
T Consensus       206 ---------------------P~------nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  206 ---------------------PA------NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             ---------------------cc------CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence                                 00      00001123677789986 457777888999999999842110   001111


Q ss_pred             EE---------eccCcceEEEeeCCCcEEEEeCCCceEEEEc-cCCceEeeeccccc------------ce---EEEEEc
Q 013545          346 VR---------LQTSKPIQLATTQDPAVVFVPCMTAVKAFDI-WSGKTCLTFRGHYE------------YV---NCCCFS  400 (441)
Q Consensus       346 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~-~~~~~~~~l~gh~~------------~v---~~v~fs  400 (441)
                      ..         .....+..+.++++|.++++-.--++++||+ -..+++.++.-|..            .|   ..|+||
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence            00         0011233467888999998877789999999 55677777776642            12   558999


Q ss_pred             CCCCeEEEeecCCcEEEeCCCCCC
Q 013545          401 SQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       401 pd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      -++.+++|||-....++++...+-
T Consensus       339 g~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             CCcceEecccccceEEEecCCCCc
Confidence            999999999999999999965443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.04  E-value=3.3e-08  Score=94.31  Aligned_cols=206  Identities=18%  Similarity=0.171  Sum_probs=137.1

Q ss_pred             CCCCcEEEEeeCCCcEEEEECCCCcccCCCCceec--cceeEEeecccccCcccceeEEEE---eeCCCCEEEEEeCCCc
Q 013545           53 LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAK--HRSVFVVDKQHEHGHKYAISSAIW---YPVDTGLFVTGSYDHY  127 (441)
Q Consensus        53 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~---~~~~~~~l~sgs~D~~  127 (441)
                      |+...|+|....||.+||||..++.....-..+.+  ..+++..-.-...-..-...+..+   -..+..+++=|-..|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            45567999999999999999887653211000000  000000000000000000000000   0124456777888999


Q ss_pred             EEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545          128 VKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (441)
Q Consensus       128 i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~  204 (441)
                      |.++++..++....+.   +.+.+..+..+.   ...+|.|++.|..+.+|+..+...++...+.+..+.++..+||++ 
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-
Confidence            9999999998876665   345565554443   345899999999999999999999999999999999999999987 


Q ss_pred             EEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCC
Q 013545          205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS  284 (441)
Q Consensus       205 ~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (441)
                      +++++|  ++|++||+.+.+.+..                                                        
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~--------------------------------------------------------  179 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVIT--------------------------------------------------------  179 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEE--------------------------------------------------------
Confidence            567765  6999999987654433                                                        


Q ss_pred             cccccCCCcccccccceeeccCeEEEEEccC-----CCEEEEe-ecCCcEEEeeCCC
Q 013545          285 VRQRLHPGMLSSQDRATAHYGAVTGLKVTED-----GMYLLSA-GSDSRIRLWDVES  335 (441)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~sg-s~D~~i~~wd~~~  335 (441)
                                     +.+|.++|+++.|-.+     |.++.++ ..+.-+.+|-+..
T Consensus       180 ---------------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  180 ---------------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ---------------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                           3578899999999877     6776654 5566678886654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=2.4e-09  Score=100.94  Aligned_cols=176  Identities=18%  Similarity=0.249  Sum_probs=120.5

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      ++||+..|..++-- ++++-++|+|.|+|+++|.++..-..     +.+...     +-+...|+.+|.++-+.. +-..
T Consensus       731 f~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~-----~~tsaC-----QfTY~aHkk~i~~igfL~-~lr~  798 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDE-----IGTSAC-----QFTYQAHKKPIHDIGFLA-DLRS  798 (1034)
T ss_pred             ccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCc-----ccccee-----eeEhhhccCcccceeeee-ccce
Confidence            56999988888753 46667999999999999998643211     111111     123357999999988875 4446


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-----cCCC
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-----SGHR  190 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-----~~h~  190 (441)
                      ++++  |+-|.+||.--++++.+..   -++.+..+..-+.-....++|.++...+|+++|.+.++....+     .+..
T Consensus       799 i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  799 IASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             eeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence            6654  8999999987666654321   1122211222222223445666688899999999988765544     4556


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEe
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~  229 (441)
                      +.+.+++..|.|.+ ++.+=.+|.|.+-|.|+++.+..+
T Consensus       877 a~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNK-LAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             hheeEEEeccCcch-hhHHhcCCcEEEEecCCCceeccC
Confidence            77899999999987 577888999999999998765543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=1.1e-07  Score=93.85  Aligned_cols=217  Identities=17%  Similarity=0.171  Sum_probs=128.9

Q ss_pred             cccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEE
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD  176 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwd  176 (441)
                      +...+....|+| |++.|+..+.+   ..|.+||+.+++........+......++|++.  .++.+...++  .|.++|
T Consensus       197 ~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~--~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        197 SREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS--KLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             CCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC--EEEEEEccCCCceEEEEE
Confidence            445566778887 78888776654   368889998887544333344444567777643  3444444444  688899


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      +++++.. .+..+........|+|+++.+++++..++.  |.++|+.+++..+..                         
T Consensus       274 ~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-------------------------  327 (430)
T PRK00178        274 LASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-------------------------  327 (430)
T ss_pred             CCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-------------------------
Confidence            9988653 455566666778999999876666555554  444454433211000                         


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC-C--cEEEe
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-S--RIRLW  331 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-~--~i~~w  331 (441)
                                                                   ..+  .......|+|||++|+..+.+ +  .|.+|
T Consensus       328 ---------------------------------------------~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        328 ---------------------------------------------FVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             ---------------------------------------------cCC--CCccceEECCCCCEEEEEEccCCceEEEEE
Confidence                                                         000  011235799999998876543 2  58889


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      |+.+++....  .    .........+++++..++....    ..+.++++ ++.....+..+.+.+...+|||
T Consensus       361 dl~tg~~~~l--t----~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        361 DLQRGSVRIL--T----DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             ECCCCCEEEc--c----CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            9987653221  1    0111223468899888766533    23445555 3444445555556666677776

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.00  E-value=1.8e-08  Score=101.80  Aligned_cols=197  Identities=20%  Similarity=0.249  Sum_probs=138.2

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEE-EEeeCCCCEEEEEe
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSA-IWYPVDTGLFVTGS  123 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~-~~~~~~~~~l~sgs  123 (441)
                      .|....+. -+++.++.+..+..+.|||..........  ....+..+             ..++ .-...+.-++++|+
T Consensus        89 wi~g~~l~-~e~k~i~l~~~~ns~~i~d~~~~~~~~~i--~~~er~~l-------------~~~~~~g~s~~~~~i~~gs  152 (967)
T KOG0974|consen   89 WIFGAKLF-EENKKIALVTSRNSLLIRDSKNSSVLSKI--QSDERCTL-------------YSSLIIGDSAEELYIASGS  152 (967)
T ss_pred             cccccchh-hhcceEEEEEcCceEEEEecccCceehhc--CCCceEEE-------------EeEEEEeccCcEEEEEecc
Confidence            33334443 24678999999999999998755432100  00000000             0111 12233456889999


Q ss_pred             CCCcEEEEECCCC-eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEEEEecC
Q 013545          124 YDHYVKVWDTNCT-RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       124 ~D~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v~fsp~  201 (441)
                      -=+.|.+|+.... ......-+.|.++++.++.++   .++++.|+|.++++|++++++... +.-||+..|+.+.|+|+
T Consensus       153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg---~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n  229 (967)
T KOG0974|consen  153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG---RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN  229 (967)
T ss_pred             ccccEEEEeccccCCcceecccCCceEEEEEccCC---cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence            9999999998632 233344567888888887754   589999999999999999998765 66799999999999997


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                         .++|++.|-+.++|+..- ..+.+                                                     
T Consensus       230 ---~i~t~gedctcrvW~~~~-~~l~~-----------------------------------------------------  252 (967)
T KOG0974|consen  230 ---RIITVGEDCTCRVWGVNG-TQLEV-----------------------------------------------------  252 (967)
T ss_pred             ---eeEEeccceEEEEEeccc-ceehh-----------------------------------------------------
Confidence               378999999999996531 11110                                                     


Q ss_pred             CCCcccccCCCcccccccceeec-cCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                        ..+|. ..+..++.+++...++|++.|+++++|++..
T Consensus       253 ------------------y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  253 ------------------YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ------------------hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence                              11232 3488899999999999999999999999764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=3.9e-07  Score=90.01  Aligned_cols=216  Identities=14%  Similarity=0.107  Sum_probs=121.9

Q ss_pred             cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~  204 (441)
                      .|.++|...............+....++|++.  .++.+...+  ..|.+||+.+++... +....+.....+|+|+++.
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence            56677875544322223344566677888653  333333333  368999999886532 2222333457899999998


Q ss_pred             EEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          205 ILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       205 ~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      ++++.+.++.  |.++|+.++....                                                       
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~-------------------------------------------------------  300 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTR-------------------------------------------------------  300 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEE-------------------------------------------------------
Confidence            7777777776  5555654332100                                                       


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC--cEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                       ...+.......+|+|||+.|+..+. ++  .|.++|+.+++....     ..........+++
T Consensus       301 -----------------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-----t~~g~~~~~~~~S  358 (448)
T PRK04792        301 -----------------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-----TFEGEQNLGGSIT  358 (448)
T ss_pred             -----------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-----ecCCCCCcCeeEC
Confidence                             0011122345689999998775543 33  466677776653211     1111122335788


Q ss_pred             CCCcEEEEeCC--C--ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee-cCCc--EEEeCCCCCC
Q 013545          360 QDPAVVFVPCM--T--AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQ--ILVWCPSRHI  424 (441)
Q Consensus       360 ~~~~~~~~~~~--~--~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s-~D~~--i~vW~~~~~~  424 (441)
                      +|+..++....  .  .+.++|+.+++.. .+... .......|+|||++|+-.+ .++.  +.+++.+...
T Consensus       359 pDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~  428 (448)
T PRK04792        359 PDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF  428 (448)
T ss_pred             CCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            99988766433  2  3455677777643 23322 1223458999999987544 3443  6666775443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.96  E-value=1.1e-09  Score=68.23  Aligned_cols=39  Identities=38%  Similarity=0.614  Sum_probs=36.6

Q ss_pred             CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          381 GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       381 ~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      |+++.++.+|.++|++|+|+|++.+|+||+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356789999999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=5.1e-07  Score=88.48  Aligned_cols=233  Identities=10%  Similarity=0.116  Sum_probs=130.1

Q ss_pred             cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~  204 (441)
                      .|.+.|...+.........+....-.|+|++....++.+...+  ..|.+.++.+++.. .+....+.....+|+|||+.
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCE
Confidence            5666676544432211123344556788876533333343333  46888899888643 33334445567899999987


Q ss_pred             EEEEeecCC----cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545          205 ILVTGGCDG----AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  280 (441)
Q Consensus       205 ~l~s~s~Dg----~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (441)
                      ++++...+|    .+.+||+..+..            .                                          
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~------------g------------------------------------------  270 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAI------------G------------------------------------------  270 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCC------------C------------------------------------------
Confidence            766554333    333355432100            0                                          


Q ss_pred             CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEe--eCCCCCceeeeeeeEEeccCcceEEE
Q 013545          281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                         . ...+          ...+.+.....+|+|||+.|+..+ .++...+|  ++.......   ..+...........
T Consensus       271 ---~-~~~l----------t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~~lt~~~~~~~~p~  333 (428)
T PRK01029        271 ---K-PRRL----------LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---RLLTKKYRNSSCPA  333 (428)
T ss_pred             ---c-ceEe----------ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---EEeccCCCCcccee
Confidence               0 0000          000112234568999999887655 46655555  443211111   11111112334567


Q ss_pred             eeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE-eec--CCcEEEeCCCCCCCCCccC
Q 013545          358 TTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT-GGN--DRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       358 ~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s-~s~--D~~i~vW~~~~~~~~~~~~  430 (441)
                      ++||+..++....    ..+.+||+.+++... +......+....|+|||++|+- +..  ...|.+|++.++....+..
T Consensus       334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            8999987766432    368899998887643 3333446788999999998874 333  3468888998887665554


Q ss_pred             Cc
Q 013545          431 GP  432 (441)
Q Consensus       431 ~~  432 (441)
                      +.
T Consensus       413 ~~  414 (428)
T PRK01029        413 GS  414 (428)
T ss_pred             CC
Confidence            43

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.91  E-value=1.9e-05  Score=75.38  Aligned_cols=276  Identities=18%  Similarity=0.232  Sum_probs=156.2

Q ss_pred             ceeEEEccCCCCcEEEEeeC----CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           45 SINSLQVDLTEERYLLSGAS----DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .-..|+++| ++++|.+...    ++.|..|.+....     +.+.....+.      ..|  .....+.+.+ ++.+|+
T Consensus        38 ~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~-----g~L~~~~~~~------~~g--~~p~~i~~~~-~g~~l~  102 (345)
T PF10282_consen   38 NPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDT-----GTLTLLNSVP------SGG--SSPCHIAVDP-DGRFLY  102 (345)
T ss_dssp             SECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTT-----TEEEEEEEEE------ESS--SCEEEEEECT-TSSEEE
T ss_pred             CCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCc-----ceeEEeeeec------cCC--CCcEEEEEec-CCCEEE
Confidence            345678886 4667766666    5789999876431     0111111110      001  1222345554 677777


Q ss_pred             EEe-CCCcEEEEECCC-CeEEEE---Eec-----------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--e
Q 013545          121 TGS-YDHYVKVWDTNC-TRVVMN---FKM-----------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--I  182 (441)
Q Consensus       121 sgs-~D~~i~iWd~~~-~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~  182 (441)
                      ++. .+++|.++++.. +.....   +.+           ..+...+.++|++  ..++++.-....|.+|++....  +
T Consensus       103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l  180 (345)
T PF10282_consen  103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKL  180 (345)
T ss_dssp             EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred             EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceE
Confidence            776 489999999976 443222   211           1335677777754  3445544455689999997654  3


Q ss_pred             e--eeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          183 S--QTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       183 ~--~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      .  ..+. ........+.|+|+++++++..-.+++|.++++.. ...+..+.....             +          
T Consensus       181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~-------------~----------  237 (345)
T PF10282_consen  181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST-------------L----------  237 (345)
T ss_dssp             EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-------------C----------
T ss_pred             EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee-------------c----------
Confidence            2  2222 33455789999999998888888889999999872 111111110000             0          


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE-eecCCcEEEeeCCCCC
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGR  337 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~~~  337 (441)
                                                      +.      ... .......|+++|||++|.+ .....+|.+|++....
T Consensus       238 --------------------------------~~------~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~  278 (345)
T PF10282_consen  238 --------------------------------PE------GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT  278 (345)
T ss_dssp             --------------------------------ET------TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred             --------------------------------cc------ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence                                            00      000 0124668899999998655 4567789999994322


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc--cCCceEeeec-ccccceEEEEE
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKTCLTFR-GHYEYVNCCCF  399 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~~~~l~-gh~~~v~~v~f  399 (441)
                      ..+............|..+++++++.++++++.  ..+.+|++  .+|.+...-. -.-....||.|
T Consensus       279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            222223333333445788999999999998865  47888876  4555433321 12334567665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.90  E-value=4.1e-08  Score=87.81  Aligned_cols=245  Identities=19%  Similarity=0.301  Sum_probs=153.4

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEEC-CCCeEEEEE--ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT-NCTRVVMNF--KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      .||.+.|++...-|. .+-+++.+.|.++|+|-- ..++.-..+  .++.++....+.+.   ...|..|-.+|++.-+.
T Consensus        21 eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             cCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc---ceEEEEEEecceEEEEE
Confidence            478888888777664 456899999999999943 233332222  23555555555543   24677888889988887


Q ss_pred             CCC----CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeE--eccCCccccCCCCccccccccc
Q 013545          177 IAS----GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV--LDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       177 l~~----~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      +..    -...+....|...|..+-|+-..+++ ++.+.|..+.-=-.+.+..+.-  ++...                 
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V-~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~-----------------  158 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWV-LSTGKDKQFAWHCTESGNRLGGYNFETPA-----------------  158 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeE-EEeccccceEEEeeccCCcccceEeeccC-----------------
Confidence            643    23445567899999999999887764 6888887665333333221110  00000                 


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCc-ccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV-RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR  329 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  329 (441)
                              .....   +.. ..+  +|.-  .+.+ .-++.+..........+|.+++++++|.|....+.+|..|..+.
T Consensus       159 --------t~~~~---d~~-~~f--vGd~--~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi  222 (404)
T KOG1409|consen  159 --------SALQF---DAL-YAF--VGDH--SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI  222 (404)
T ss_pred             --------CCCce---eeE-EEE--eccc--ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence                    00000   000 000  0000  0000 00111111222234578999999999999999999999999999


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      +||+.-.+..                                            ..++.+|.+.|..+.--+--+.|.|+
T Consensus       223 ~wdigg~~g~--------------------------------------------~~el~gh~~kV~~l~~~~~t~~l~S~  258 (404)
T KOG1409|consen  223 MWDIGGRKGT--------------------------------------------AYELQGHNDKVQALSYAQHTRQLISC  258 (404)
T ss_pred             EEeccCCcce--------------------------------------------eeeeccchhhhhhhhhhhhheeeeec
Confidence            9998754321                                            13456788888877777777889999


Q ss_pred             ecCCcEEEeCCCCCCCC
Q 013545          410 GNDRQILVWCPSRHISD  426 (441)
Q Consensus       410 s~D~~i~vW~~~~~~~~  426 (441)
                      ++|+.|.+|++.-.+..
T Consensus       259 ~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  259 GEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             cCCCeEEEEeccceeec
Confidence            99999999999865543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.89  E-value=9.7e-08  Score=85.43  Aligned_cols=171  Identities=18%  Similarity=0.345  Sum_probs=101.9

Q ss_pred             CceeEEEccCCCC-cEEEEeeCCCcEEEEECCCCc-ccC-----CCCce-----------eccceeEEe--ecccccCcc
Q 013545           44 GSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRAT-DYE-----GGGHI-----------AKHRSVFVV--DKQHEHGHK  103 (441)
Q Consensus        44 ~~V~~l~~s~~~~-~~l~s~s~Dg~i~iwd~~~~~-~~~-----~~~~~-----------~~~~~~~~~--~~~~~~~h~  103 (441)
                      ..|+.+.|-++.+ ..++...+|.+|++|.+.... ..+     ..+..           ..+..++..  -+-...+|+
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            4688888764432 345566699999999875322 110     00000           011111100  012345899


Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---EEEEEecC------CeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFKMP------GKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~las~s~d~~I~v  174 (441)
                      .-|+++.+.+ |.+.++|+ +|=.|.+|.++--.   -+..++..      .-+.+..|+|...  ++++-+++.|+|++
T Consensus       165 yhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c--n~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  165 YHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC--NVFVYSSSKGTIRL  240 (433)
T ss_pred             eEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc--cEEEEecCCCcEEE
Confidence            9999998876 77778776 78899999875211   12222211      1244556776543  46666778899999


Q ss_pred             EECCCCcee----eee------------cCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcC
Q 013545          175 CDIASGAIS----QTL------------SGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (441)
Q Consensus       175 wdl~~~~~~----~~l------------~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~  221 (441)
                      .|++...+.    +.+            .+--..|..+.|+++|+++ +|  .| -+|++||+.
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryi-ls--RDyltvk~wD~n  301 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYI-LS--RDYLTVKLWDLN  301 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEE-EE--eccceeEEEecc
Confidence            999854321    111            1122457789999999864 43  45 799999985

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.87  E-value=1.1e-08  Score=99.66  Aligned_cols=161  Identities=16%  Similarity=0.347  Sum_probs=111.8

Q ss_pred             CceeEEEccCCCC--cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           44 GSINSLQVDLTEE--RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        44 ~~V~~l~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      -.|-..+|+|...  -++++.+.-. -.||++.....          +.|    .-...||+.+|+.+.|.+...+++++
T Consensus        68 w~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~----------~aI----ef~lhghsraitd~n~~~q~pdVlat  132 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSS----------NAI----EFVLHGHSRAITDINFNPQHPDVLAT  132 (1081)
T ss_pred             chhcceecccCCCCceeEEecCcch-hhhhhhhcCCc----------cce----EEEEecCccceeccccCCCCCcceee
Confidence            3577778876543  3577776644 46899864321          111    11245899999999999998999999


Q ss_pred             EeCCCcEEEEECCCCeE-EEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeEEEEE
Q 013545          122 GSYDHYVKVWDTNCTRV-VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v~f  198 (441)
                      ++-|..+..||+++... +-.+.. ......+.+.-.  ....+|+ +....|++||+.-| .++..+++|...|..++|
T Consensus       133 csvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk--~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f  209 (1081)
T KOG0309|consen  133 CSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK--DPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF  209 (1081)
T ss_pred             ccccccceeeeccCCCcceeeeecccccCceeeeccc--Ccchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence            99999999999986543 221111 111223334332  2234554 45678999999766 577889999999999999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCC
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      ..-....+++++.|++|++||-.+
T Consensus       210 nr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  210 NRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             hhhhhhhhcccCCCCceeeecccc
Confidence            876555678999999999999653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.80  E-value=4.3e-06  Score=74.70  Aligned_cols=335  Identities=15%  Similarity=0.143  Sum_probs=159.2

Q ss_pred             CceeEEEccCCCCcE-EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           44 GSINSLQVDLTEERY-LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      ..|..+.|.. +..+ |-....|+.|++|++...+-+            ..++     .-..++.+..|+|....+|.+.
T Consensus        49 dki~yieW~a-ds~~ilC~~yk~~~vqvwsl~Qpew~------------ckId-----eg~agls~~~WSPdgrhiL~ts  110 (447)
T KOG4497|consen   49 DKIVYIEWKA-DSCHILCVAYKDPKVQVWSLVQPEWY------------CKID-----EGQAGLSSISWSPDGRHILLTS  110 (447)
T ss_pred             HHhhheeeec-cceeeeeeeeccceEEEEEeecceeE------------EEec-----cCCCcceeeeECCCcceEeeee
Confidence            4566777875 4445 455677889999998644321            0011     1223567788998544778888


Q ss_pred             eCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEE-----------------------------------
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAG-----------------------------------  166 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~-----------------------------------  166 (441)
                      .-|-.|.+|.+.+.+.... +++ ..+...+|++++.   ..|.+                                   
T Consensus       111 eF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW  186 (447)
T KOG4497|consen  111 EFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQ---FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW  186 (447)
T ss_pred             cceeEEEEEEeccceeEEe-cccccCceeEEECCCCc---eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence            8999999999987665321 111 1123334444331   11111                                   


Q ss_pred             -eCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCC--cc
Q 013545          167 -TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPP--LL  243 (441)
Q Consensus       167 -s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~--~~  243 (441)
                       -.++.+.+||.--.-.+..+. ..-.+..++|+|.++ +|+.|+-|+.+|+-+--+-+.+..+-.....  ..+.  ..
T Consensus       187 sPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~--~dp~~~~~  262 (447)
T KOG4497|consen  187 SPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSY--HDPTLHLL  262 (447)
T ss_pred             CCCCcEEEEecchhhheeeeee-eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhc--cCchhhhh
Confidence             122345566632111111111 124578899999887 6899999999998764332222111000000  0000  00


Q ss_pred             cccccccCccCCcCCCCCCcccCCCCCccccCccccc-CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEe
Q 013545          244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP-AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA  322 (441)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  322 (441)
                      ........+....    ...+.+........+..... ........++.-.. ..+.... .-.+.-++|++|..|++|-
T Consensus       263 ~ke~~~~~ql~~~----cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp-~tD~pnP-k~g~g~lafs~Ds~y~aTr  336 (447)
T KOG4497|consen  263 EKETFSIVQLLHH----CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP-PTDFPNP-KCGAGKLAFSCDSTYAATR  336 (447)
T ss_pred             hhhhcchhhhccc----ccccCCCccccCccccchhhhhhhhcceeeecccC-CCCCCCc-ccccceeeecCCceEEeee
Confidence            0000000000000    00000000000000000000 00000000000000 0000111 2236678999999999887


Q ss_pred             ecC--CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEE-EeCCCceEEEEccCCceEeeecccccceEEEEE
Q 013545          323 GSD--SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF-VPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       323 s~D--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      ...  ..+.+||+...+.     .++-.+-..+..+...|.-..++ ..+...+..|...- .......+..-.|..+.|
T Consensus       337 nd~~PnalW~Wdlq~l~l-----~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF~i~~l~W  410 (447)
T KOG4497|consen  337 NDKYPNALWLWDLQNLKL-----HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGFNIQKLQW  410 (447)
T ss_pred             cCCCCceEEEEechhhhh-----hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCceeeeEEe
Confidence            443  4689999987542     11111112223334444433333 33334566666533 222222223345999999


Q ss_pred             cCCCCeEEEeecCCcEE
Q 013545          400 SSQDQELYTGGNDRQIL  416 (441)
Q Consensus       400 spd~~~l~s~s~D~~i~  416 (441)
                      .-+|..++-++.|.-..
T Consensus       411 ~~~g~~i~l~~kDafc~  427 (447)
T KOG4497|consen  411 LQPGEFIVLCGKDAFCV  427 (447)
T ss_pred             cCCCcEEEEEcCCceEE
Confidence            99999999999997543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.80  E-value=1.4e-05  Score=86.59  Aligned_cols=276  Identities=17%  Similarity=0.234  Sum_probs=153.3

Q ss_pred             EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCC
Q 013545           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDH  126 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~  126 (441)
                      .+++++.+++++++-+..+.|++||.........++.  .....  .+.....++-.....+++.+ +++.| ++-...+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~--g~~G~--~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~  646 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST--GEEGL--RDGSFEDATFNRPQGLAYNA-KKNLLYVADTENH  646 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC--CCcCC--CCCchhccccCCCcEEEEeC-CCCEEEEEeCCCc
Confidence            5777765677888989999999999753221000000  00000  00000001111233456655 45544 4445567


Q ss_pred             cEEEEECCCCeEEEEEecC------------------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545          127 YVKVWDTNCTRVVMNFKMP------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~  188 (441)
                      .|+.+|+.++... ++...                  .....+++++.  +..++++...++.|++||..++... .+.+
T Consensus       647 ~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        647 ALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             eEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            8999998876643 22110                  01234555553  2346667777899999999877542 2211


Q ss_pred             ---------C------CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          189 ---------H------RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       189 ---------h------~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                               +      -.....++|+|+++.++++-+.++.|++||+.++...-.. .      ..+..           
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-g------g~~~~-----------  784 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-G------GDPTF-----------  784 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-e------ccccc-----------
Confidence                     1      1234679999998877888888899999998865321100 0      00000           


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~  333 (441)
                       ..            ....+         +..+     +. .    .........+|+++++|..+++-+.+++|++||.
T Consensus       785 -~~------------~l~~f---------G~~d-----G~-g----~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~  832 (1057)
T PLN02919        785 -SD------------NLFKF---------GDHD-----GV-G----SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDP  832 (1057)
T ss_pred             -Cc------------ccccc---------cCCC-----Cc-h----hhhhccCCceeeEeCCCcEEEEECCCCEEEEEEC
Confidence             00            00000         0000     00 0    0001122457899999999999999999999999


Q ss_pred             CCCCceeeeeee----------EEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCce
Q 013545          334 ESGRNTLVNFET----------VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT  383 (441)
Q Consensus       334 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~  383 (441)
                      .++..... ...          .......|..+++.+++.++++... ..+++||+.+++.
T Consensus       833 ~tg~v~ti-aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        833 ATKRVTTL-AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCeEEEE-eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            87643211 000          0011235667888899986655544 6899999988764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=3.5e-06  Score=82.64  Aligned_cols=217  Identities=11%  Similarity=0.071  Sum_probs=122.8

Q ss_pred             eeEEEEeeCCCCE--E-EEEeCCCc--EEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC----CCcEEEEE
Q 013545          106 ISSAIWYPVDTGL--F-VTGSYDHY--VKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE----DVQVRLCD  176 (441)
Q Consensus       106 V~~~~~~~~~~~~--l-~sgs~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~----d~~I~vwd  176 (441)
                      +.+-.|+| ||..  + ++...++.  |.+.++.+++........+......++|++.  .++.+...    +-.+..|+
T Consensus       187 ~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~--~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        187 SITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK--LLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             cccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC--EEEEEECCCCCcceeEEEee
Confidence            34457777 6653  2 24444444  6666887776544444555556677888754  33333322    22344478


Q ss_pred             CCCC---ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC---ceeeEeccCCccccCCCCccccccccc
Q 013545          177 IASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA---GCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       177 l~~~---~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      +.++   +..+...++.+......|+|||+.++.+...+|..++|.+...   +...                       
T Consensus       264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~-----------------------  320 (428)
T PRK01029        264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR-----------------------  320 (428)
T ss_pred             cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE-----------------------
Confidence            7653   3333333333445678999999876555556777777754310   0000                       


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---Cc
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SR  327 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~  327 (441)
                                                                      ....+...+....|||||+.|+..+.+   ..
T Consensus       321 ------------------------------------------------~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~  352 (428)
T PRK01029        321 ------------------------------------------------LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ  352 (428)
T ss_pred             ------------------------------------------------EeccCCCCccceeECCCCCEEEEEEcCCCCcE
Confidence                                                            000111234567899999988866543   46


Q ss_pred             EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCC
Q 013545          328 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       328 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd  402 (441)
                      |.+||+.+++....     ...........+++|+..++....    ..+.++++..++..... ...+.+...+|||-
T Consensus       353 I~v~dl~~g~~~~L-----t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~  425 (428)
T PRK01029        353 ICVYDLATGRDYQL-----TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF  425 (428)
T ss_pred             EEEEECCCCCeEEc-----cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence            99999988763221     101112334678899887664322    35777788776644333 34455667777774

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.2e-07  Score=86.04  Aligned_cols=271  Identities=14%  Similarity=0.172  Sum_probs=166.7

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      |...|+.+.-+  -.++++++|.||.++.|--..-+.             ... -.+...|-..|.+++.+- ++-++.|
T Consensus         8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isG-------------vEf-VKhFraHL~~I~sl~~S~-dg~L~~S   70 (558)
T KOG0882|consen    8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISG-------------VEF-VKHFRAHLGVILSLAVSY-DGWLFRS   70 (558)
T ss_pred             ccceeeeEeee--hhheEEeeecchhhhhcCCCCccc-------------eee-hhhhHHHHHHHHhhhccc-cceeEee
Confidence            77788877665  357999999999999996432110             000 124456777777666554 7878899


Q ss_pred             EeC-CCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeee-cCCCCCeEE
Q 013545          122 GSY-DHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTL-SGHRDGIMT  195 (441)
Q Consensus       122 gs~-D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l-~~h~~~v~~  195 (441)
                      .+. |+.+|++|+++-..+.-++   +++.+..+. ++-.....+.++.-.++.|.++|-.... ....+ .-|..+|.+
T Consensus        71 v~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~  149 (558)
T KOG0882|consen   71 VEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK  149 (558)
T ss_pred             ccCcccceeEEEeeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE
Confidence            888 9999999998766553333   344332221 1111112233344467899999975543 22233 359999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +.++|.++. ++|....|.|.-|....  .++..+..                   ..                      
T Consensus       150 i~y~qa~Ds-~vSiD~~gmVEyWs~e~--~~qfPr~~-------------------l~----------------------  185 (558)
T KOG0882|consen  150 IRYNQAGDS-AVSIDISGMVEYWSAEG--PFQFPRTN-------------------LN----------------------  185 (558)
T ss_pred             EEeeccccc-eeeccccceeEeecCCC--cccCcccc-------------------cc----------------------
Confidence            999999885 67888889999998652  11110000                   00                      


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee-------------
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN-------------  342 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~-------------  342 (441)
                       +.+.....+..            .........++.|+|+|..+.+-+.|..||++++.+++.....             
T Consensus       186 -~~~K~eTdLy~------------f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks  252 (558)
T KOG0882|consen  186 -FELKHETDLYG------------FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS  252 (558)
T ss_pred             -ccccccchhhc------------ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc
Confidence             00000000000            0111244678999999999999999999999999987632210             


Q ss_pred             ---eeeEEe-------------ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeee
Q 013545          343 ---FETVRL-------------QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF  387 (441)
Q Consensus       343 ---~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l  387 (441)
                         +..+.+             ....-....+..++..++.+..-+++++++.++.....+
T Consensus       253 ~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  253 PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL  313 (558)
T ss_pred             ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence               000110             001112356667788888888889999999887765543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.77  E-value=1.4e-05  Score=77.50  Aligned_cols=270  Identities=17%  Similarity=0.124  Sum_probs=153.3

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 013545           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~  135 (441)
                      ++.++.++.+|.+.-+|..+++..      ..      ..  .......   ....   +++.++.++.|+.+..+|..+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~------W~------~~--~~~~~~~---~p~v---~~~~v~v~~~~g~l~ald~~t  124 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRL------WR------VD--LDERLSG---GVGA---DGGLVFVGTEKGEVIALDAED  124 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEe------ee------ec--CCCCccc---ceEE---cCCEEEEEcCCCEEEEEECCC
Confidence            347888889999999998877531      00      00  0000111   1111   356788888999999999999


Q ss_pred             CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe-----EEEEEecCCCcEEEEee
Q 013545          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILVTGG  210 (441)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v-----~~v~fsp~~~~~l~s~s  210 (441)
                      |+.+......+.+......   .+ ..+..++.++.+..+|.++|+.+..+.......     .+.... ++  .++.+.
T Consensus       125 G~~~W~~~~~~~~~~~p~v---~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v~~~~  197 (377)
T TIGR03300       125 GKELWRAKLSSEVLSPPLV---AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--GVLVGF  197 (377)
T ss_pred             CcEeeeeccCceeecCCEE---EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--EEEEEC
Confidence            9988777666544322111   12 245566778999999999999877665432211     111122 22  356677


Q ss_pred             cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccC
Q 013545          211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH  290 (441)
Q Consensus       211 ~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (441)
                      .++.+..+|.++++..-....... .                               +.             ....    
T Consensus       198 ~~g~v~ald~~tG~~~W~~~~~~~-~-------------------------------g~-------------~~~~----  228 (377)
T TIGR03300       198 AGGKLVALDLQTGQPLWEQRVALP-K-------------------------------GR-------------TELE----  228 (377)
T ss_pred             CCCEEEEEEccCCCEeeeeccccC-C-------------------------------CC-------------Cchh----
Confidence            789999999887643211000000 0                               00             0000    


Q ss_pred             CCcccccccceee-ccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC
Q 013545          291 PGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC  369 (441)
Q Consensus       291 ~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (441)
                              ..... ..++    +  .+..+..++.++.++.||..+++.... ..   .  ......+  .++..+++..
T Consensus       229 --------~~~~~~~~p~----~--~~~~vy~~~~~g~l~a~d~~tG~~~W~-~~---~--~~~~~p~--~~~~~vyv~~  286 (377)
T TIGR03300       229 --------RLVDVDGDPV----V--DGGQVYAVSYQGRVAALDLRSGRVLWK-RD---A--SSYQGPA--VDDNRLYVTD  286 (377)
T ss_pred             --------hhhccCCccE----E--ECCEEEEEEcCCEEEEEECCCCcEEEe-ec---c--CCccCce--EeCCEEEEEC
Confidence                    00000 0111    1  244677788899999999998864321 11   1  1111111  1234444443


Q ss_pred             -CCceEEEEccCCceEeeeccccc-ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          370 -MTAVKAFDIWSGKTCLTFRGHYE-YVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       370 -~~~~~~wd~~~~~~~~~l~gh~~-~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                       .+.+..+|..+|+.+-....... .......  .+..|+.++.|+.|.+|+..+++.
T Consensus       287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence             46899999999887755422111 1222222  367888999999999999987764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.73  E-value=7.5e-08  Score=102.34  Aligned_cols=193  Identities=18%  Similarity=0.225  Sum_probs=130.8

Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~  181 (441)
                      ..|.++..+| ...+.+||+.|+.|++|.-..++.+..+...|  ++.+..|+..+   ..+..+-.||.+-+|... .+
T Consensus      2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG---nk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG---NKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC---CceeeeccCCceeecccC-Cc
Confidence            3455555555 35688999999999999988888777776544  34455555543   346667789999999987 66


Q ss_pred             eeeeecCCCCCeEEEEEecCCCcEEEEee---cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       182 ~~~~l~~h~~~v~~v~fsp~~~~~l~s~s---~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      +....+.|........|...   ++++++   .++.+.+||.-.....                                
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~-------------------------------- 2328 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMN-------------------------------- 2328 (2439)
T ss_pred             ceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCccc--------------------------------
Confidence            66677789988888888863   456654   4678999996421000                                


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                               .             -...+|.+.++++++-|.-+.|+|||.+|.|++||+...+.
T Consensus      2329 -------------------------s-------------~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2329 -------------------------S-------------LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             -------------------------c-------------eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence                                     0             01257888999999999999999999999999999986442


Q ss_pred             eeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeec
Q 013545          339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFR  388 (441)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~  388 (441)
                      .    ++..  .       .. ...+++.+. .+.++||++..-.+++++.
T Consensus      2371 ~----h~~~--~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2371 R----HTFQ--A-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             H----HHhh--h-------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            1    1100  0       01 111222332 3567777777666666554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.72  E-value=2.6e-07  Score=84.43  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=96.1

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545          114 VDTGLFVTGSYDHYVKVWDTNCTR----VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (441)
Q Consensus       114 ~~~~~l~sgs~D~~i~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h  189 (441)
                      +++.++|.+-.++...+.+.....    ++.....+.....+.+.....+..+.-.++....+.+|....+. ...+-||
T Consensus        72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGh  150 (390)
T KOG3914|consen   72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGH  150 (390)
T ss_pred             CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhh
Confidence            356677777666665555543222    22222222222333333333222333344555667777766543 3345699


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      .+.++.|+++||++ +++++..|..||+=.....-.                                            
T Consensus       151 vSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~--------------------------------------------  185 (390)
T KOG3914|consen  151 VSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFV--------------------------------------------  185 (390)
T ss_pred             hhhhheeeecCCCC-EEEEecCCceEEEEecCcccc--------------------------------------------
Confidence            99999999999997 568999999998765321000                                            


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                                ......||...|..+++-++. .|+|||.|++|++||+.+++.
T Consensus       186 --------------------------IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  186 --------------------------IESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             --------------------------hhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence                                      001135788889999987654 589999999999999999875

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=6.3e-07  Score=85.40  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=85.0

Q ss_pred             ccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe------------eEEEeeccCCCCccEEEEEeCCC
Q 013545          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK------------VYRTAMSPLAASHMLIAAGTEDV  170 (441)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~las~s~d~  170 (441)
                      .++++++...+. ..+|++|+.|+.|.+||.++...+..+.....            +.++.|..+   ..-+++|+.+|
T Consensus       175 ~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~---gL~~aVGts~G  250 (703)
T KOG2321|consen  175 SGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD---GLHVAVGTSTG  250 (703)
T ss_pred             cccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC---ceeEEeeccCC
Confidence            356777777764 45889999999999999988776655544322            555555543   45789999999


Q ss_pred             cEEEEECCCCceeeeec-CCCCCeEEEEEecCCC-cEEEEeecCCcEEEEEcCCCceee
Q 013545          171 QVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFR  227 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~~  227 (441)
                      .|.+|||.+.+++..-. +..-+|..+.|.+.+. ..++|. ....++|||-.+++.+.
T Consensus       251 ~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  251 SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA  308 (703)
T ss_pred             cEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCcee
Confidence            99999999988765432 3456678888877622 234554 34689999977765443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=5e-08  Score=60.63  Aligned_cols=39  Identities=38%  Similarity=0.865  Sum_probs=35.4

Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (441)
Q Consensus       180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD  219 (441)
                      ++++.++.+|.+.|.+++|+|++. .|+|++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            356788999999999999999977 589999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=0.00011  Score=66.92  Aligned_cols=279  Identities=10%  Similarity=0.134  Sum_probs=158.9

Q ss_pred             CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC---CCcEEEEECC--CCeEE
Q 013545           65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTN--CTRVV  139 (441)
Q Consensus        65 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~--~~~~~  139 (441)
                      ++.|.+|++.+.+..     +....         ...+...++-+.+.+ +.+.|.++-.   ++.|--+.+.  +|+..
T Consensus        15 s~gI~v~~ld~~~g~-----l~~~~---------~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt   79 (346)
T COG2706          15 SQGIYVFNLDTKTGE-----LSLLQ---------LVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLT   79 (346)
T ss_pred             CCceEEEEEeCcccc-----cchhh---------hccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEE
Confidence            577999998643311     11100         112334455677776 5667776654   4667766654  35532


Q ss_pred             --EEEecCCee-EEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceeee--ecCCCCC----------eEEEEEecCCC
Q 013545          140 --MNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQT--LSGHRDG----------IMTVEWSTSSE  203 (441)
Q Consensus       140 --~~~~~~~~~-~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~--l~~h~~~----------v~~v~fsp~~~  203 (441)
                        .....++.. ..+++..+  +..++.+.-.-+.|.++-++. |.+...  +..|.+.          +-+..|.|+++
T Consensus        80 ~ln~~~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~  157 (346)
T COG2706          80 FLNRQTLPGSPPCYVSVDED--GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR  157 (346)
T ss_pred             EeeccccCCCCCeEEEECCC--CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence              222233332 33444443  334555555568999999965 543221  2234444          78899999998


Q ss_pred             cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG  283 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (441)
                      ++++..=.--.|.+|++..++....- .                                                    
T Consensus       158 ~l~v~DLG~Dri~~y~~~dg~L~~~~-~----------------------------------------------------  184 (346)
T COG2706         158 YLVVPDLGTDRIFLYDLDDGKLTPAD-P----------------------------------------------------  184 (346)
T ss_pred             EEEEeecCCceEEEEEcccCcccccc-c----------------------------------------------------
Confidence            65433222236888888754311000 0                                                    


Q ss_pred             CcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeee---EEe---ccCcceEE
Q 013545          284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFET---VRL---QTSKPIQL  356 (441)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~---~~~---~~~~~~~~  356 (441)
                         ..+.+            ..-.+-|.|+|++++.- ..=-+++|-+|........+..+..   +..   .......+
T Consensus       185 ---~~v~~------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         185 ---AEVKP------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             ---cccCC------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence               00000            01245689999999753 4566889999998874222221111   111   12233457


Q ss_pred             EeeCCCcEEEEeCCC--ceEEEEccC--Cce--EeeecccccceEEEEEcCCCCeEEEeecCC-cEEEe--CCCCCCCCC
Q 013545          357 ATTQDPAVVFVPCMT--AVKAFDIWS--GKT--CLTFRGHYEYVNCCCFSSQDQELYTGGNDR-QILVW--CPSRHISDG  427 (441)
Q Consensus       357 ~~~~~~~~~~~~~~~--~~~~wd~~~--~~~--~~~l~gh~~~v~~v~fspd~~~l~s~s~D~-~i~vW--~~~~~~~~~  427 (441)
                      ..++||.++++...+  .+-+|.+..  +++  +.....|...-....|+|+|++|+.+.+|. +|.++  |..++++..
T Consensus       250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            788999999987653  566666633  332  122333444468899999999999887764 68888  666777664


Q ss_pred             c
Q 013545          428 V  428 (441)
Q Consensus       428 ~  428 (441)
                      +
T Consensus       330 ~  330 (346)
T COG2706         330 L  330 (346)
T ss_pred             c
Confidence            3

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=4.9e-06  Score=79.36  Aligned_cols=116  Identities=9%  Similarity=0.182  Sum_probs=87.3

Q ss_pred             eccCeEEEEEccCCCEEEE--eecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEE
Q 013545          303 HYGAVTGLKVTEDGMYLLS--AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAF  376 (441)
Q Consensus       303 h~~~v~~l~~s~dg~~l~s--gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~w  376 (441)
                      ..++|.++.|+|+|+.++.  |=.-..+.|+|++-. .      ...+..+.-.++-++|.|.+++.++.    +.+.+|
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-P------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-E------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence            3689999999999987554  444567889988632 1      12334555667889999999988865    479999


Q ss_pred             EccCCceEeeecccccceEEEEEcCCCCeEEEeec------CCcEEEeCCCCCCCCC
Q 013545          377 DIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISDG  427 (441)
Q Consensus       377 d~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~------D~~i~vW~~~~~~~~~  427 (441)
                      |+.+.+++..+..-.  -+-+.|+|||++++|+..      |+.++||+....++..
T Consensus       342 Dv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~  396 (566)
T KOG2315|consen  342 DVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE  396 (566)
T ss_pred             eccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence            999988877776443  466799999999997643      7889999997666553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.63  E-value=3.3e-05  Score=74.87  Aligned_cols=258  Identities=13%  Similarity=0.088  Sum_probs=145.3

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 013545           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~  135 (441)
                      +..++.++.||.+..+|..+++..      ....            -.+.+.+....  .++.++.++.|+.|..||.++
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~------W~~~------------~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t  164 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKEL------WRAK------------LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT  164 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEe------eeec------------cCceeecCCEE--ECCEEEEECCCCeEEEEEcCC
Confidence            346777888999999998776531      1000            00111111111  234677778899999999999


Q ss_pred             CeEEEEEecCCeeEEEe--eccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC-C-C--------Ce-EEEEEecCC
Q 013545          136 TRVVMNFKMPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-R-D--------GI-MTVEWSTSS  202 (441)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h-~-~--------~v-~~v~fsp~~  202 (441)
                      ++.+.+++.........  .+|...+ ..+..+..++.+..+|+++|+.+....-. . +        .+ .+..+.  +
T Consensus       165 G~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~  241 (377)
T TIGR03300       165 GERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G  241 (377)
T ss_pred             CceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C
Confidence            99887766543322111  1111111 24567778899999999999876543211 0 0        01 111122  2


Q ss_pred             CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      .. +..++.+|.+..||.++++..-..+                                                    
T Consensus       242 ~~-vy~~~~~g~l~a~d~~tG~~~W~~~----------------------------------------------------  268 (377)
T TIGR03300       242 GQ-VYAVSYQGRVAALDLRSGRVLWKRD----------------------------------------------------  268 (377)
T ss_pred             CE-EEEEEcCCEEEEEECCCCcEEEeec----------------------------------------------------
Confidence            33 4567789999999987664211000                                                    


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP  362 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (441)
                                          . .......  .++..|..++.|+.+..+|..+++.... +..  +..........  .+
T Consensus       269 --------------------~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~-~~~--~~~~~~ssp~i--~g  320 (377)
T TIGR03300       269 --------------------A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWK-NDE--LKYRQLTAPAV--VG  320 (377)
T ss_pred             --------------------c-CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEc-ccc--ccCCccccCEE--EC
Confidence                                0 0000111  2355666778899999999988764221 111  11000001111  23


Q ss_pred             cEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          363 AVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       363 ~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                      ..+++.+ .+.+.++|..+|+.+..+..+...+..--...++ .|+.++.||.|..+
T Consensus       321 ~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       321 GYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence            3555543 4689999999999998888776544332222344 57788899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=1.4e-07  Score=89.33  Aligned_cols=175  Identities=18%  Similarity=0.255  Sum_probs=115.7

Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      +..+.||...|..++-..+.. -|+|+|.|++|++|.++....         .+                          
T Consensus       728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD---------~~--------------------------  771 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGD---------EI--------------------------  771 (1034)
T ss_pred             eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccC---------cc--------------------------
Confidence            456789999999887654443 478999999999999875210         00                          


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                                                   +....+-...+|..+|.++.|-.+-+++++.  |+-|.+||.-.++.....
T Consensus       772 -----------------------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~  820 (1034)
T KOG4190|consen  772 -----------------------------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQM  820 (1034)
T ss_pred             -----------------------------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhh
Confidence                                         0000011234688899999999999998754  788999998876542211


Q ss_pred             eeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeee-----cccccceEEEEEcCCCCeEEEeecCCcE
Q 013545          343 FETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTF-----RGHYEYVNCCCFSSQDQELYTGGNDRQI  415 (441)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l-----~gh~~~v~~v~fspd~~~l~s~s~D~~i  415 (441)
                      ....+......+...-+-+..++..+|.  .+|+.+|...++-..++     .+...-+.+++..|.|++++.|=..|+|
T Consensus       821 ~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci  900 (1034)
T KOG4190|consen  821 EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI  900 (1034)
T ss_pred             hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence            1111111122222222223334444443  68999998776543333     4555679999999999999999889999


Q ss_pred             EEeCCCCCC
Q 013545          416 LVWCPSRHI  424 (441)
Q Consensus       416 ~vW~~~~~~  424 (441)
                      -+-|..+++
T Consensus       901 ~~LDaR~G~  909 (1034)
T KOG4190|consen  901 AILDARNGK  909 (1034)
T ss_pred             EEEecCCCc
Confidence            999888776

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.57  E-value=4.6e-07  Score=96.57  Aligned_cols=155  Identities=17%  Similarity=0.330  Sum_probs=104.2

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      -..|.++.-+|. ..+-+||+.||.+++|.-..+.            +++. - ++. |. ..|+.+.|.. .|+.+..+
T Consensus      2208 v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~------------~v~~-~-rt~-g~-s~vtr~~f~~-qGnk~~i~ 2269 (2439)
T KOG1064|consen 2208 VENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQ------------QVVC-F-RTA-GN-SRVTRSRFNH-QGNKFGIV 2269 (2439)
T ss_pred             cCceeeecCCCC-CceEEecCCCceEEEEeccCCC------------eEEE-e-ecc-Cc-chhhhhhhcc-cCCceeee
Confidence            367888887775 4588999999999999753321            1111 1 111 23 5566667765 57788889


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEE---eCCCcEEEEECCCC-ceeeeecCCCCCeEEEE
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAG---TEDVQVRLCDIASG-AISQTLSGHRDGIMTVE  197 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~---s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v~  197 (441)
                      ..||.+-+|.+. .++....+++.+ ..++.|-.     .+++++   +.++.+.+||..-. .....-..|.+.+++++
T Consensus      2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred             ccCCceeecccC-CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence            999999999986 444444444322 22333322     234433   35778999996422 22122278999999999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCC
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      |.|..+ +|+|||.+|.|++||++.
T Consensus      2344 ~~P~~q-llisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2344 YAPKHQ-LLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred             EcCcce-EEEecCCcCcEEEeehHH
Confidence            999876 789999999999999974

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.54  E-value=0.00011  Score=68.99  Aligned_cols=153  Identities=16%  Similarity=0.234  Sum_probs=108.8

Q ss_pred             ccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCC-cEE
Q 013545           51 VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH-YVK  129 (441)
Q Consensus        51 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~-~i~  129 (441)
                      |++.+|++++..|. |...|.+.-.+-.             +      ..+|.+.|.-..+.. +++-++.|..|+ .+-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-------------i------qv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~  385 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-------------I------QVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLG  385 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCee-------------E------EcCCCCceEEEEEcc-CCcceEEeccCCceEE
Confidence            55556777777776 5555555432211             0      125666666555543 456788888888 899


Q ss_pred             EEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEe
Q 013545          130 VWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG  209 (441)
Q Consensus       130 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~  209 (441)
                      |+|..+++.....+--+.+.++..++++.   .++++.....+.+.|+++|+....-+...+-|+...|+|++++ +|-+
T Consensus       386 iyd~~~~e~kr~e~~lg~I~av~vs~dGK---~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~-iAYa  461 (668)
T COG4946         386 IYDKDGGEVKRIEKDLGNIEAVKVSPDGK---KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW-IAYA  461 (668)
T ss_pred             EEecCCceEEEeeCCccceEEEEEcCCCc---EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee-EEEe
Confidence            99999888665555556788888888653   6777888889999999999876555666788999999999986 4544


Q ss_pred             ecCC----cEEEEEcCCCceeeE
Q 013545          210 GCDG----AIRFWDIRRAGCFRV  228 (441)
Q Consensus       210 s~Dg----~I~iWD~~~~~~~~~  228 (441)
                      =-+|    .|+++|+..++.+.+
T Consensus       462 fP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         462 FPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             cCcceeeeeEEEEecCCCeEEEe
Confidence            4444    699999998776554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.53  E-value=3.4e-05  Score=67.23  Aligned_cols=147  Identities=12%  Similarity=0.002  Sum_probs=90.3

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 013545           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~  135 (441)
                      ..+|+.|+.-|...+|.+.+...     +..      ..+     .|...|.-+.-.-...-.+..++.|+++++.++.-
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~-----h~~------~cd-----~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~  147 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDG-----HLY------QCD-----VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG  147 (344)
T ss_pred             ccEEEeccccceeeeecccCccc-----cee------eec-----ccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence            35899999999999999875432     110      000     12111211110000112466788999999998864


Q ss_pred             CeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-cee-e-eecCCCCCeEEEEEecCCCcEEEEeec
Q 013545          136 TRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AIS-Q-TLSGHRDGIMTVEWSTSSEWILVTGGC  211 (441)
Q Consensus       136 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~-~-~l~~h~~~v~~v~fsp~~~~~l~s~s~  211 (441)
                      +......... -....+.++++.   .++++.+....|..|.+... +++ + .+..-.+.-.+.+|+..+. .||.+..
T Consensus       148 ~s~~~~~h~~~~~~ns~~~snd~---~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Q  223 (344)
T KOG4532|consen  148 DSNKFAVHNQNLTQNSLHYSNDP---SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQ  223 (344)
T ss_pred             CcccceeeccccceeeeEEcCCC---ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEec
Confidence            4322111111 124556666653   47777777888999998653 333 2 2334445557889998765 6899999


Q ss_pred             CCcEEEEEcCC
Q 013545          212 DGAIRFWDIRR  222 (441)
Q Consensus       212 Dg~I~iWD~~~  222 (441)
                      ||++.|||+|.
T Consensus       224 dg~~~I~DVR~  234 (344)
T KOG4532|consen  224 DGTCAIYDVRN  234 (344)
T ss_pred             CCcEEEEEecc
Confidence            99999999985

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.50  E-value=2.5e-05  Score=68.09  Aligned_cols=227  Identities=7%  Similarity=0.037  Sum_probs=132.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCC-CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLA-ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      ..+||.||.-+...+|.+.+.+..... +......+.+...- ....-+..++.|.++++.+++.+.....+.-..-.+.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            358999999999999998876643322 22112222221110 0111234456788888888866543322211112378


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      ++.++|++++ +++.+....|-+|.+......-.                            .                 
T Consensus       163 s~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~----------------------------~-----------------  196 (344)
T KOG4532|consen  163 SLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIE----------------------------N-----------------  196 (344)
T ss_pred             eeEEcCCCce-EEEecCCCcceEEEeCCccceee----------------------------e-----------------
Confidence            9999999985 67888888899998764211000                            0                 


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                                  ..           ...-.+.-.+..|+.....+|++..||++.|||++...-........+.++.+.+
T Consensus       197 ------------~~-----------~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~  253 (344)
T KOG4532|consen  197 ------------IY-----------EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF  253 (344)
T ss_pred             ------------eE-----------ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce
Confidence                        00           0000111235689999999999999999999999875422211111222233333


Q ss_pred             E-EEeeCCC---cEEEEeCCCceEEEEccCCceEeee-------cccc-cceEEEEEcCCCCeEEEeecC
Q 013545          355 Q-LATTQDP---AVVFVPCMTAVKAFDIWSGKTCLTF-------RGHY-EYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       355 ~-~~~~~~~---~~~~~~~~~~~~~wd~~~~~~~~~l-------~gh~-~~v~~v~fspd~~~l~s~s~D  412 (441)
                      + +.+++.+   -++++...+.+.+.|+.+++.+..+       +.|. ..|..-.|+.++..+.+..++
T Consensus       254 R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  254 RVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             EEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            2 3444322   2334445578899999887655432       3333 338888888888777766665

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.49  E-value=1.8e-06  Score=79.05  Aligned_cols=107  Identities=17%  Similarity=0.277  Sum_probs=83.1

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee-ecCCCCCeEEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVE  197 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~  197 (441)
                      .-.++++..+.+|.+..+.++..+.+-.-+.+++++++.   ..+.++.-|..|++-.....-.+.. +-||+.-|..++
T Consensus       125 ~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~---~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  125 ADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDD---QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             EeecCCceeeeeecccccCcchhhhhhhhhheeeecCCC---CEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence            345677788888887766655555555567888999875   4788889999999987765544444 458999999999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~  230 (441)
                      .-++.  .|+|+|.|+++++||+++++++.+++
T Consensus       202 l~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  202 LTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence            98763  57999999999999999999887664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=6.6e-05  Score=71.85  Aligned_cols=192  Identities=19%  Similarity=0.291  Sum_probs=114.1

Q ss_pred             hhhhhhhhccccceecccceeee-cCCCCceeEEEccCCCC-cEEEE-----eeCCCcEEEEECCCCcccCCCCceeccc
Q 013545           17 SFANRVKSHRLSTLQLSNYKEIV-SPHKGSINSLQVDLTEE-RYLLS-----GASDSSVAVYDVQRATDYEGGGHIAKHR   89 (441)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~-~~H~~~V~~l~~s~~~~-~~l~s-----~s~Dg~i~iwd~~~~~~~~~~~~~~~~~   89 (441)
                      +.++++....+.-+++.++..+. .-|...|+.+.+||... .++|+     ++.=..+|||.+.....-.   .+ ..+
T Consensus       138 sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~---~~-a~k  213 (566)
T KOG2315|consen  138 SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ---PV-ANK  213 (566)
T ss_pred             hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc---hh-hhc
Confidence            45566666566666666554443 34778899999997522 34443     4556679999875211000   00 001


Q ss_pred             eeEEeecccccCcccceeEEEEeeCCCCEEE--EEeCC---------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCC
Q 013545           90 SVFVVDKQHEHGHKYAISSAIWYPVDTGLFV--TGSYD---------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA  158 (441)
Q Consensus        90 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~--sgs~D---------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (441)
                      .-+..         +.| .+.|.+....+|+  +.--|         .++.+.++....+.-.+.-.|+|+++.|++.+.
T Consensus       214 sFFka---------dkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  214 SFFKA---------DKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR  283 (566)
T ss_pred             ccccc---------cee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence            11100         111 2344433222332  22223         467788887556665566678999999998753


Q ss_pred             CccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEee--cCCcEEEEEcCCCcee
Q 013545          159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG--CDGAIRFWDIRRAGCF  226 (441)
Q Consensus       159 ~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s--~Dg~I~iWD~~~~~~~  226 (441)
                       ...++-|-.-..+.+||++ ++++..+.  .++-.++-|+|.|..++++|=  --|.|-+||+.+.+++
T Consensus       284 -EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  284 -EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             -EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence             3456667777789999995 45555553  455578999999986554432  2489999998765543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.48  E-value=4.3e-06  Score=74.10  Aligned_cols=171  Identities=15%  Similarity=0.273  Sum_probs=96.2

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCc--ccCCCCceeccceeEEeeccccc--CcccceeEEEEeeCC-CC
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHIAKHRSVFVVDKQHEH--GHKYAISSAIWYPVD-TG  117 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~~~~~~~~-~~  117 (441)
                      ...|+++.|.- .|.||+||..-|.+.+|......  ++.--...+.+..    +..+.+  .-...|..+.|+.+. ..
T Consensus        26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~----EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL----EFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhccccc----chhhhhhccHHHHhhheeeecCCCcc
Confidence            46799999974 57899999999999999754322  1100000011110    001111  112346667776533 34


Q ss_pred             EEEEEeCCCcEEEEECCCCeE--EEE--------EecC----------------------------------CeeEEEee
Q 013545          118 LFVTGSYDHYVKVWDTNCTRV--VMN--------FKMP----------------------------------GKVYRTAM  153 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~--~~~--------~~~~----------------------------------~~~~~~~~  153 (441)
                      .|+-.+.|++|++|.+.....  +.+        +.+.                                  -++.++.+
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            566677999999998643210  000        0000                                  01122222


Q ss_pred             ccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecCCC-----CCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          154 SPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHR-----DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       154 ~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~h~-----~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      ..+   ...+.| ..|-.|.+|+++-..   .+..++.|.     .-|++..|+|..-.+|+-++.-|.|++-|+|.
T Consensus       181 NsD---~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         181 NSD---KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             cCc---hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            221   123333 356789999986432   233445554     34789999998555666677789999999984

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.47  E-value=0.00098  Score=60.38  Aligned_cols=218  Identities=17%  Similarity=0.208  Sum_probs=128.1

Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (441)
Q Consensus       109 ~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~  188 (441)
                      .+|.+.++.++++--..+.|..||..++... .+..++ ...+.+...  +.. |..+.. +.+.++|+++++....+..
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~--~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG-PNGMAFDRP--DGR-LYVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS-EEEEEEECT--TSE-EEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC-CceEEEEcc--CCE-EEEEEc-CceEEEecCCCcEEEEeec
Confidence            3455445667777777899999999887653 344454 344444421  233 334443 4566779999865433322


Q ss_pred             -----CCCCeEEEEEecCCCcEEEEeecC--------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          189 -----HRDGIMTVEWSTSSEWILVTGGCD--------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       189 -----h~~~v~~v~fsp~~~~~l~s~s~D--------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                           .......+++.|+|. +.++....        |.|..++.. ++...                            
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~----------------------------  128 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV----------------------------  128 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEE----------------------------
T ss_pred             cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEE----------------------------
Confidence                 334567899999987 55554432        223333322 11000                            


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCC
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVE  334 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~  334 (441)
                                                                  ........+.|+|+||++.| ++-+..++|..+++.
T Consensus       129 --------------------------------------------~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~  164 (246)
T PF08450_consen  129 --------------------------------------------VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD  164 (246)
T ss_dssp             --------------------------------------------EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred             --------------------------------------------EecCcccccceEECCcchheeecccccceeEEEecc
Confidence                                                        01122346889999999865 577888999999986


Q ss_pred             CCCceeeeeee-EEeccC--cceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEc-CCCCeEE
Q 013545          335 SGRNTLVNFET-VRLQTS--KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQELY  407 (441)
Q Consensus       335 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs-pd~~~l~  407 (441)
                      ........... ..+...  .+--+++..++.+.++. ....+.+++.. |+.+..+.--...+++++|. ||.+.|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  165 ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence            43321211111 122222  25567888888765543 45788999987 88888777665689999994 6756655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.46  E-value=0.00056  Score=64.44  Aligned_cols=254  Identities=12%  Similarity=0.073  Sum_probs=134.4

Q ss_pred             ccCCCCcEE-EEee---------CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           51 VDLTEERYL-LSGA---------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        51 ~s~~~~~~l-~s~s---------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      +||+ ++.| ++.+         .+..|.+||+.+.+....   +      . +................+++ ||++++
T Consensus        53 ~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~---i------~-~p~~p~~~~~~~~~~~~ls~-dgk~l~  120 (352)
T TIGR02658        53 VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD---I------E-LPEGPRFLVGTYPWMTSLTP-DNKTLL  120 (352)
T ss_pred             ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeE---E------c-cCCCchhhccCccceEEECC-CCCEEE
Confidence            7875 5554 5555         589999999988764210   0      0 00000000000111234454 787777


Q ss_pred             EEe-C-CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Ccee----eeecCCCCCe
Q 013545          121 TGS-Y-DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAIS----QTLSGHRDGI  193 (441)
Q Consensus       121 sgs-~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~----~~l~~h~~~v  193 (441)
                      ..- . +..|-+.|+.+++.+.++..++...-...+.   ...+  +-+.|+......+.+ |+..    ..+.+-...+
T Consensus       121 V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v  195 (352)
T TIGR02658       121 FYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL  195 (352)
T ss_pred             EecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---CccE--EEeecCceEEEEecCCCceEEeeeeeecCCcccc
Confidence            554 3 7999999999999999888765432222221   1112  223355544444322 2211    1111100000


Q ss_pred             E-EEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          194 M-TVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       194 ~-~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      . .-.|.+ +++++++|..  |+|.+-|+....... ...              .                         
T Consensus       196 ~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~-~~~--------------~-------------------------  233 (352)
T TIGR02658       196 INHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKF-LPA--------------I-------------------------  233 (352)
T ss_pred             ccCCceEcCCCcEEEEecC--CeEEEEecCCCccee-cce--------------e-------------------------
Confidence            0 004556 7776665543  999999975432100 000              0                         


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee----------cCCcEEEeeCCCCCceee
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG----------SDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs----------~D~~i~~wd~~~~~~~~~  341 (441)
                            .+.........+             ..+...-++++|+++++....          ..++|.++|..+++... 
T Consensus       234 ------~~~~~~~~~~~w-------------rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-  293 (352)
T TIGR02658       234 ------EAFTEAEKADGW-------------RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-  293 (352)
T ss_pred             ------eecccccccccc-------------CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-
Confidence                  000000000000             112233389999988766532          22579999998876321 


Q ss_pred             eeeeEEeccCcceEEEeeCCCc-EEEEeCC--CceEEEEccCCceEeee
Q 013545          342 NFETVRLQTSKPIQLATTQDPA-VVFVPCM--TAVKAFDIWSGKTCLTF  387 (441)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~wd~~~~~~~~~l  387 (441)
                         .+. -...+..+++++|++ .+++.+.  +.+.++|..+++.+.++
T Consensus       294 ---~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       294 ---KIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ---EEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence               111 134566789999999 7776653  57999999999988876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.45  E-value=5.2e-05  Score=68.20  Aligned_cols=224  Identities=14%  Similarity=0.112  Sum_probs=125.1

Q ss_pred             CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~  203 (441)
                      ++++|..||..+++.+....+..........+.. ....+.+++.++.+..||..+|+.+..+.. ...+.......++ 
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~-   77 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG-   77 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence            3689999999999998888763211111101110 122455667899999999999998876654 2221111222333 


Q ss_pred             cEEEEeecCCcEEEEEcCCCceeeEe-ccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          204 WILVTGGCDGAIRFWDIRRAGCFRVL-DQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      .+ +.++.|+.|..+|.++++..-.. ......                                               
T Consensus        78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----------------------------------------------  109 (238)
T PF13360_consen   78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPP-----------------------------------------------  109 (238)
T ss_dssp             EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCT-----------------------------------------------
T ss_pred             cc-ccccceeeeEecccCCcceeeeeccccccc-----------------------------------------------
Confidence            33 45567889999998887643221 100000                                               


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-Cc-------ce
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SK-------PI  354 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~-------~~  354 (441)
                                         ..........+  ++..++.+..++.|..+|+.+++.... +.. .... ..       ..
T Consensus       110 -------------------~~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~-~~~-~~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen  110 -------------------AGVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWK-YPV-GEPRGSSPISSFSDIN  166 (238)
T ss_dssp             -------------------CSTB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEE-EES-STT-SS--EEEETTEE
T ss_pred             -------------------cccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEE-eec-CCCCCCcceeeecccc
Confidence                               00000111222  277788888899999999999874321 111 0000 00       01


Q ss_pred             EEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      ......++ .++.... ..+-.+|+.+++.+-...  ...+.. .+.+++..|+.++.|+.+..||+.+++.
T Consensus       167 ~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  167 GSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             cceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            12222334 4444443 433444999988654322  222222 1456778888888999999999998863

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=1.1e-06  Score=78.98  Aligned_cols=149  Identities=15%  Similarity=0.174  Sum_probs=104.3

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC-
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-  136 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~-  136 (441)
                      +-++.+.+..|-|=|++++..                  +.+ +.+..|.+..|.. .++++..|...|.|...|++.+ 
T Consensus       226 yhfs~G~sqqv~L~nvetg~~------------------qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rn  285 (425)
T KOG2695|consen  226 YHFSVGLSQQVLLTNVETGHQ------------------QSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRN  285 (425)
T ss_pred             eeecccccceeEEEEeecccc------------------ccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecc
Confidence            346666777777777765531                  111 2445666666654 4679999999999999999754 


Q ss_pred             ----eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce---eeeecCCCCCeEEEEEe--cCCCcEEE
Q 013545          137 ----RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSGHRDGIMTVEWS--TSSEWILV  207 (441)
Q Consensus       137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~---~~~l~~h~~~v~~v~fs--p~~~~~l~  207 (441)
                          .+.+.+.++..+.++..-.+  +...|.+.+.+|+|++||+.--++   ++++.||...-.-+-++  +. +.+++
T Consensus       286 qG~~~~a~rlyh~Ssvtslq~Lq~--s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~  362 (425)
T KOG2695|consen  286 QGNGWCAQRLYHDSSVTSLQILQF--SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIF  362 (425)
T ss_pred             cCCCcceEEEEcCcchhhhhhhcc--ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc-cceEE
Confidence                35566666766665554432  345677778999999999976655   88899997665544443  33 34678


Q ss_pred             EeecCCcEEEEEcCCCceeeEe
Q 013545          208 TGGCDGAIRFWDIRRAGCFRVL  229 (441)
Q Consensus       208 s~s~Dg~I~iWD~~~~~~~~~~  229 (441)
                      +++.|-.-|||.++.+-.+.++
T Consensus       363 s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             EccCeeEEEEEecccCceeecc
Confidence            8999999999999987665554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.42  E-value=3.4e-07  Score=91.27  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=101.7

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ++..|+..-+|++|+. +.++|+.|+-.|.|+++++.+|....                 +...|..+|+-+.-+. ||.
T Consensus      1096 ~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~-----------------s~ncH~SavT~vePs~-dgs 1156 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEE-----------------SVNCHQSAVTLVEPSV-DGS 1156 (1516)
T ss_pred             hhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccc-----------------cccccccccccccccC-Ccc
Confidence            3557888999999984 57799999999999999999876431                 2236777887666554 565


Q ss_pred             EEEE-EeCCC-cEEEEECCC-CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee-ecC---CC
Q 013545          118 LFVT-GSYDH-YVKVWDTNC-TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSG---HR  190 (441)
Q Consensus       118 ~l~s-gs~D~-~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-l~~---h~  190 (441)
                      .+++ +++.. -..+|+... +.+.+.|...   .++.|+...   ..-+.|+......+||++|+..+.+ +.+   ..
T Consensus      1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDED---KAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred             eeeeeccccCchHHHhccccccCcccccccc---ceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence            5544 44443 578999753 3444444322   223344321   1223344456799999999987665 322   22


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG  224 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~  224 (441)
                      ..-.++.|+|..+.+|    .||  -+||+|...
T Consensus      1231 y~~n~a~FsP~D~LIl----ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL----NDG--VLWDVRIPE 1258 (1516)
T ss_pred             hhccccccCCCcceEe----eCc--eeeeeccHH
Confidence            2236889999987443    466  789998653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.39  E-value=0.00021  Score=69.88  Aligned_cols=197  Identities=12%  Similarity=0.037  Sum_probs=112.0

Q ss_pred             CeeEEEeeccCCCCccEEE-EEeC--CCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc--EEEEEc
Q 013545          146 GKVYRTAMSPLAASHMLIA-AGTE--DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDI  220 (441)
Q Consensus       146 ~~~~~~~~~~~~~~~~~la-s~s~--d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~--I~iWD~  220 (441)
                      +......++|++.  .+++ +...  +..|.++|+.+++..... ...+......|+||++.++++.+.++.  |.++|+
T Consensus       188 ~~~~~p~wSpDG~--~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        188 GLNIFPKWANKEQ--TAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CCeEeEEECCCCC--cEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            4455667787653  2233 2222  457999999998764433 345556778899999887777665544  555565


Q ss_pred             CCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccc
Q 013545          221 RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRA  300 (441)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (441)
                      ..+...+ +                                                                       
T Consensus       265 ~~g~~~~-L-----------------------------------------------------------------------  272 (419)
T PRK04043        265 NTKTLTQ-I-----------------------------------------------------------------------  272 (419)
T ss_pred             CCCcEEE-c-----------------------------------------------------------------------
Confidence            4332110 0                                                                       


Q ss_pred             eeeccCeEEEEEccCCCEEEEeec-CC--cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-------
Q 013545          301 TAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------  370 (441)
Q Consensus       301 ~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  370 (441)
                      ..+.+......|+|||+.|+-.+. .+  .|.+.|+.+++.....+     . +. ....++||+..++....       
T Consensus       273 T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-----~-g~-~~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        273 TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-----H-GK-NNSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-----C-CC-cCceECCCCCEEEEEEcCCCcccC
Confidence            000011122369999987665442 23  57788888765322111     1 11 12378899987765432       


Q ss_pred             ---CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec-CCc--EEEeCCCCCCCC
Q 013545          371 ---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQ--ILVWCPSRHISD  426 (441)
Q Consensus       371 ---~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~--i~vW~~~~~~~~  426 (441)
                         ..+.+.|+.++.. ..|... .......|||||+.|+-.+. .+.  +.+.+++....-
T Consensus       346 ~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~  405 (419)
T PRK04043        346 KNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF  405 (419)
T ss_pred             CCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence               2456667777754 334332 23346889999998774433 333  555566655433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.39  E-value=1.6e-06  Score=74.98  Aligned_cols=213  Identities=13%  Similarity=0.137  Sum_probs=119.1

Q ss_pred             CCCC-ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           41 PHKG-SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        41 ~H~~-~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      +|.+ .|..+.|+  ....|+++..++.+......++.....-+......+.....     -|+..-.+-.++- -+..+
T Consensus        33 ~~~d~~~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-----~~sep~p~~~~s~-~~t~V  104 (319)
T KOG4714|consen   33 QHADVKLSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-----KNSEIDPNDACTM-TDNRV  104 (319)
T ss_pred             cccceEEEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeee-----ccCCCCCcccccc-cCCce
Confidence            4443 46777776  24568899999988887765544311000000111111111     1222221112222 24578


Q ss_pred             EEEeCCCcEEEEECCCCeEE-EEEec--CCeeEEEeeccCCCCccEEEEEe-----CCCcEEEEECCCCceeeeecCCCC
Q 013545          120 VTGSYDHYVKVWDTNCTRVV-MNFKM--PGKVYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIASGAISQTLSGHRD  191 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~las~s-----~d~~I~vwdl~~~~~~~~l~~h~~  191 (441)
                      +++..|+.+-+.+.+.-..+ .++..  .+......++.    ...+.++.     .-+..+.|+++..+....-..-..
T Consensus       105 ~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~----~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~  180 (319)
T KOG4714|consen  105 CIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRH----GNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD  180 (319)
T ss_pred             EecCCCceEEEEechHHHhhhhhcccccccccccceeec----ccEEecCCcceEeeccceeeecccccccccccccccc
Confidence            99999999999987641111 11110  00000011111    11222221     112355666544332222222234


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      .|.++.-+|..+.++++|+.||.+-+||.|.....                                             
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------------------------------------  215 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------------------------------------------  215 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------------------------------------
Confidence            48999999998888999999999999999853100                                             


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCC
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~  335 (441)
                                               ...+++|..++..|-|+|. +..|.+++.||.+.-||.++
T Consensus       216 -------------------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  216 -------------------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -------------------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                                     0013578889999999986 56899999999999999875

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.31  E-value=0.0027  Score=58.11  Aligned_cols=279  Identities=15%  Similarity=0.242  Sum_probs=159.9

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCC---CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASD---SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.+..+-|+|+| +.++|.++-.+   |.|..|.+....     +.+..      +.++...|+.  -+-+++.+ ++.
T Consensus        37 ~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~-----G~Lt~------ln~~~~~g~~--p~yvsvd~-~g~  101 (346)
T COG2706          37 AELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDD-----GRLTF------LNRQTLPGSP--PCYVSVDE-DGR  101 (346)
T ss_pred             cccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCC-----CeEEE------eeccccCCCC--CeEEEECC-CCC
Confidence            4567889999996 56778777665   667777765321     11111      1112222222  13345554 788


Q ss_pred             EEEEEeC-CCcEEEEECCC-CeE---EEEEecCCe----------eEEEeeccCCCCccEEEEEe-CCCcEEEEECCCCc
Q 013545          118 LFVTGSY-DHYVKVWDTNC-TRV---VMNFKMPGK----------VYRTAMSPLAASHMLIAAGT-EDVQVRLCDIASGA  181 (441)
Q Consensus       118 ~l~sgs~-D~~i~iWd~~~-~~~---~~~~~~~~~----------~~~~~~~~~~~~~~~las~s-~d~~I~vwdl~~~~  181 (441)
                      +++++.+ -+.|.++-+.. |.+   +....+.+.          +....+.|+.   .+|++.. .--.|.+|+++.|+
T Consensus       102 ~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~---~~l~v~DLG~Dri~~y~~~dg~  178 (346)
T COG2706         102 FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG---RYLVVPDLGTDRIFLYDLDDGK  178 (346)
T ss_pred             EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC---CEEEEeecCCceEEEEEcccCc
Confidence            8888876 58899998854 443   233344333          4455555543   3454443 34479999999887


Q ss_pred             eeeeec---CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          182 ISQTLS---GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       182 ~~~~l~---~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      +...-.   .-....+-+.|+|+++...+.+=-+++|-+|..... ..++.+....                      ..
T Consensus       179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~----------------------tl  236 (346)
T COG2706         179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID----------------------TL  236 (346)
T ss_pred             cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec----------------------cC
Confidence            543211   234456889999999965555667899999998753 2222221000                      00


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESG  336 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~  336 (441)
                      +   .                     .               +.+ .....+|.++|||++|.+.. ....|-++-+...
T Consensus       237 P---~---------------------d---------------F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         237 P---E---------------------D---------------FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             c---c---------------------c---------------cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            0   0                     0               000 12356788999999987652 2346777766643


Q ss_pred             CceeeeeeeEEeccC-cceEEEeeCCCcEEEEeCC--CceEEEEc--cCCceEeeec-ccccceEEEEEc
Q 013545          337 RNTLVNFETVRLQTS-KPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKTCLTFR-GHYEYVNCCCFS  400 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~~~~l~-gh~~~v~~v~fs  400 (441)
                      ...+. +.......+ .|..+.+.+++.+++++..  ..+.+|.+  .+|++-.... .+-....||.|.
T Consensus       277 ~g~L~-~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         277 GGKLE-LVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCEEE-EEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            22222 222222223 3777889999999988865  46777776  4455433322 333446777764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=0.00027  Score=69.07  Aligned_cols=109  Identities=10%  Similarity=0.077  Sum_probs=67.7

Q ss_pred             eeEEEEeeCCCCE-EEEEeC---CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC--CCcEEEEECCC
Q 013545          106 ISSAIWYPVDTGL-FVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE--DVQVRLCDIAS  179 (441)
Q Consensus       106 V~~~~~~~~~~~~-l~sgs~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~--d~~I~vwdl~~  179 (441)
                      .....|+| |++. ++..+.   +..|.++|+.+++........+......++|++.  .++.+.+.  +..|.++|+.+
T Consensus       190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS--KLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC--EEEEEEccCCCcEEEEEECCC
Confidence            34556776 6763 554444   3568888998887655444555555667888653  34433333  45788889988


Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEE
Q 013545          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW  218 (441)
Q Consensus       180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iW  218 (441)
                      ++. ..+..+........|+|||+.++++....+.-.||
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy  304 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIF  304 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEE
Confidence            874 34444444344568999999877766555544444

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.29  E-value=2.5e-06  Score=76.64  Aligned_cols=100  Identities=17%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-----ceeeeecCCCCCeE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-----AISQTLSGHRDGIM  194 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-----~~~~~l~~h~~~v~  194 (441)
                      ++.|.+..|-+-|++++-. ..|...+.|.+..|..   ..+++..|.-+|.|...||..+     .+.+.+ -|.+.|+
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~---s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt  302 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAG---SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT  302 (425)
T ss_pred             ecccccceeEEEEeecccc-cccccchhHHHHHhcc---cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence            6667778888888876642 2222334455555544   3458888999999999999875     233333 3888899


Q ss_pred             EEEEec-CCCcEEEEeecCCcEEEEEcCCCce
Q 013545          195 TVEWST-SSEWILVTGGCDGAIRFWDIRRAGC  225 (441)
Q Consensus       195 ~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~  225 (441)
                      ++..-. ++++ |++.+.+|+|++||.|.-+|
T Consensus       303 slq~Lq~s~q~-LmaS~M~gkikLyD~R~~K~  333 (425)
T KOG2695|consen  303 SLQILQFSQQK-LMASDMTGKIKLYDLRATKC  333 (425)
T ss_pred             hhhhhccccce-EeeccCcCceeEeeehhhhc
Confidence            887665 4554 67789999999999986554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.28  E-value=3e-06  Score=73.34  Aligned_cols=76  Identities=18%  Similarity=0.260  Sum_probs=64.8

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ..|++++-+|....++++|+.||.+-+||......+                -.....|+.+++-+-|+|.+++.|++++
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------------~S~l~ahk~~i~eV~FHpk~p~~Lft~s  243 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------------VSLLKAHKAEIWEVHFHPKNPEHLFTCS  243 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccch----------------HHHHHHhhhhhhheeccCCCchheeEec
Confidence            459999999988888999999999999998754321                1234589999999999999999999999


Q ss_pred             CCCcEEEEECCC
Q 013545          124 YDHYVKVWDTNC  135 (441)
Q Consensus       124 ~D~~i~iWd~~~  135 (441)
                      .||.+.-||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.26  E-value=4.4e-06  Score=82.06  Aligned_cols=198  Identities=21%  Similarity=0.311  Sum_probs=128.1

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCC-eE---EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-RV---VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~  181 (441)
                      +..+...|. |.-+|.++.-|. .+-|+... .+   +..+. +-.+..+.+++.......++ ......-.+|++.-..
T Consensus        27 ~~a~si~p~-grdi~lAsr~gl-~i~dld~p~~ppr~l~h~t-pw~vad~qws~h~a~~~wiV-sts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   27 FNAVSINPS-GRDIVLASRQGL-YIIDLDDPFTPPRWLHHIT-PWQVADVQWSPHPAKPYWIV-STSNQKAIIWNLAKSS  102 (1081)
T ss_pred             ccceeeccc-cchhhhhhhcCe-EEEeccCCCCCceeeeccC-cchhcceecccCCCCceeEE-ecCcchhhhhhhhcCC
Confidence            444555553 444566666543 34455432 11   22111 22355566777655444444 4456677899986432


Q ss_pred             ---eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          182 ---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       182 ---~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                         .-..+.||...|+.+.|+|..+.++++++.|-.+..||+++... +..+.                           
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~---------------------------  155 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS---------------------------  155 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee---------------------------
Confidence               33467899999999999999988999999999999999986420 00000                           


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                  .....-..|+|+.....+.+.+..+.|++||.+.+.
T Consensus       156 --------------------------------------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs  191 (1081)
T KOG0309|consen  156 --------------------------------------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS  191 (1081)
T ss_pred             --------------------------------------------cccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence                                                        000123456777666666667777789999887653


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCC-CCeEEEeecCCcEE
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQIL  416 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd-~~~l~s~s~D~~i~  416 (441)
                                                                  ..+..+++|...|+.++|+-- ...+.+.+.|++|+
T Consensus       192 --------------------------------------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk  227 (1081)
T KOG0309|consen  192 --------------------------------------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK  227 (1081)
T ss_pred             --------------------------------------------cceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence                                                        223455678888888888753 35588999999999


Q ss_pred             EeCCCC
Q 013545          417 VWCPSR  422 (441)
Q Consensus       417 vW~~~~  422 (441)
                      .|+-+.
T Consensus       228 fw~y~k  233 (1081)
T KOG0309|consen  228 FWDYSK  233 (1081)
T ss_pred             eecccc
Confidence            998763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.23  E-value=0.007  Score=64.91  Aligned_cols=320  Identities=15%  Similarity=0.155  Sum_probs=168.9

Q ss_pred             CCCceeEEEccCCCCcEEEEeeC---C---CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           42 HKGSINSLQVDLTEERYLLSGAS---D---SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~---D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      +...-..|+|- .||.|+|..+-   +   ..||||+.+ |..       ...     .+.-  .|-   -.+++|.| .
T Consensus       208 ~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L-------~st-----SE~v--~gL---e~~l~WrP-s  267 (928)
T PF04762_consen  208 WDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYSRE-GEL-------QST-----SEPV--DGL---EGALSWRP-S  267 (928)
T ss_pred             cCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEECCC-ceE-------Eec-----cccC--CCc---cCCccCCC-C
Confidence            56677889995 67899888775   3   468999875 211       000     0000  000   11356766 6


Q ss_pred             CCEEEEEeC---CCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeee
Q 013545          116 TGLFVTGSY---DHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQT  185 (441)
Q Consensus       116 ~~~l~sgs~---D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~  185 (441)
                      |.++|+.-.   ...|.+|.= +|..-..|.+.     ..+..+.|++++   .+||....|. |++|-..+-.  +.+.
T Consensus       268 G~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds---~iLAv~~~~~-vqLWt~~NYHWYLKqe  342 (928)
T PF04762_consen  268 GNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDS---EILAVWLEDR-VQLWTRSNYHWYLKQE  342 (928)
T ss_pred             CCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCC---CEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence            888888765   455666753 34444444442     356777777754   4777766554 9999987654  2233


Q ss_pred             ec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545          186 LS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR  264 (441)
Q Consensus       186 l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (441)
                      +. .....+..+.|+|.....|.....+|.+..++..-.-+.    ....     +                ........
T Consensus       343 i~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~----s~~~-----~----------------~~D~g~va  397 (928)
T PF04762_consen  343 IRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR----SPGS-----S----------------PNDNGTVA  397 (928)
T ss_pred             EEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe----cCCC-----C----------------ccCceEEE
Confidence            33 223345569999987776777777788887765311000    0000     0                00000111


Q ss_pred             cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce-----
Q 013545          265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT-----  339 (441)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~-----  339 (441)
                      ..+|..+...|.....        +.|.+...   ...-..+|.+++|++++..+++-..|++|.+|........     
T Consensus       398 VIDG~~lllTpf~~a~--------VPPPMs~~---~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~  466 (928)
T PF04762_consen  398 VIDGNKLLLTPFRRAV--------VPPPMSSY---ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPP  466 (928)
T ss_pred             EEeCCeEEEecccccC--------CCchHhce---EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCc
Confidence            2233333322222111        11111111   0122467999999999988999999999999985543211     


Q ss_pred             -e-eeee-------eEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCc---eEeeecccccceEEEEEcCCC
Q 013545          340 -L-VNFE-------TVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGK---TCLTFRGHYEYVNCCCFSSQD  403 (441)
Q Consensus       340 -~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~---~~~~l~gh~~~v~~v~fspd~  403 (441)
                       . ..+.       ...........+++..+...+++...    ..+.++++...+   .......-.+.+..+...++.
T Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (928)
T PF04762_consen  467 KLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDS  546 (928)
T ss_pred             chhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCC
Confidence             0 0000       00111223345566666555444333    356666663322   222222234556666666665


Q ss_pred             CeEEEeecCCcEEEeCCCC
Q 013545          404 QELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       404 ~~l~s~s~D~~i~vW~~~~  422 (441)
                      ..++--..||.+..-+...
T Consensus       547 ~~~~~q~~~G~v~~~~~~~  565 (928)
T PF04762_consen  547 GSLYIQTNDGKVFQLSSDG  565 (928)
T ss_pred             cEEEEEECCCEEEEeecCC
Confidence            5455556688876444433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.16  E-value=0.0035  Score=55.73  Aligned_cols=37  Identities=8%  Similarity=-0.046  Sum_probs=32.3

Q ss_pred             cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          390 HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       390 h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      -...|..|.+||||+.||+..-+|.|.+|.+++=++.
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            3567999999999999999999999999999865543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=0.0003  Score=69.39  Aligned_cols=171  Identities=18%  Similarity=0.225  Sum_probs=107.6

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      .|......|+.|+- +..||+.|+.||.+++-.+.+.+.-. ..+ +...  .-...+|+..||+..|.-+.|.. ..+.
T Consensus        11 iPnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~--snLsmNQtLeGH~~sV~vvTWNe-~~QK   85 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAA--SNLSMNQTLEGHNASVMVVTWNE-NNQK   85 (1189)
T ss_pred             CCCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccc-cccc--cccchhhhhccCcceEEEEEecc-cccc
Confidence            35567899999984 66799999999999999887654311 111 1111  11223578889999999888876 4567


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEE-e--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-eeecCCCCCeE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNF-K--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIM  194 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~-~~l~~h~~~v~  194 (441)
                      |-|...+|.|.+|=+-.++-.... +  -.+-+.+.++..++   ..++..-.||.|.+=.++....- +.++|..  ..
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG---~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~--l~  160 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG---TKICIVYEDGAVIVGSVDGNRIWGKELKGQL--LA  160 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC---cEEEEEEccCCEEEEeeccceecchhcchhe--cc
Confidence            888888999999976444321110 0  01224455555443   24555566777766655433221 2344322  23


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      .+.|++|.+.+ .-+-..|.+.+||..
T Consensus       161 hv~ws~D~~~~-Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  161 HVLWSEDLEQA-LFKKANGETHLYDNQ  186 (1189)
T ss_pred             ceeecccHHHH-HhhhcCCcEEEeccc
Confidence            67899998754 456678999999965

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.15  E-value=0.0019  Score=61.48  Aligned_cols=278  Identities=14%  Similarity=0.156  Sum_probs=153.1

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCc---------------EEEEECCCCcccCCCCceecc--------------------
Q 013545           44 GSINSLQVDLTEERYLLSGASDSS---------------VAVYDVQRATDYEGGGHIAKH--------------------   88 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~---------------i~iwd~~~~~~~~~~~~~~~~--------------------   88 (441)
                      .-|.-+.|+| +++||+|=+.-..               +.+||+.++.-...-..+...                    
T Consensus        72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv  150 (561)
T COG5354          72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV  150 (561)
T ss_pred             CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence            5688999996 6899999876655               889998876521100000000                    


Q ss_pred             -ceeEEee-cccccCcc------cceeEEEEeeC-CCCEEE-----EEeCCCcEEEEECCCCeEEEEEecC-CeeEEEee
Q 013545           89 -RSVFVVD-KQHEHGHK------YAISSAIWYPV-DTGLFV-----TGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAM  153 (441)
Q Consensus        89 -~~~~~~~-~~~~~~h~------~~V~~~~~~~~-~~~~l~-----sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~  153 (441)
                       ..+++.+ ......|.      .+|..-.++|. +++.||     ..+.++++++|.+-.+.++.+..+- -.-..+.+
T Consensus       151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW  230 (561)
T COG5354         151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW  230 (561)
T ss_pred             cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence             0011111 00001111      34445556654 333333     2456788999988766665543321 00112222


Q ss_pred             ccCCCCccEEEEE----------eCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE-EEEeecCCcEEEEEcCC
Q 013545          154 SPLAASHMLIAAG----------TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI-LVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       154 ~~~~~~~~~las~----------s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~-l~s~s~Dg~I~iWD~~~  222 (441)
                      .+.+.  .+|+-.          -....+.++++.. ..+....+-.++|...+|.|.++.+ +++|-.+-++.++|++.
T Consensus       231 ~~~g~--~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         231 QVLGK--YLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             ecCCc--eEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence            32221  111110          0124577888863 3333333668999999999998753 33445788999999875


Q ss_pred             CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccccccee
Q 013545          223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA  302 (441)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (441)
                      .-.+...                                                                         
T Consensus       308 Nl~~~~P-------------------------------------------------------------------------  314 (561)
T COG5354         308 NLRFYFP-------------------------------------------------------------------------  314 (561)
T ss_pred             ceEEecC-------------------------------------------------------------------------
Confidence            3111100                                                                         


Q ss_pred             eccCeEEEEEccCCCEEEEeecC---CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-------Cc
Q 013545          303 HYGAVTGLKVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------TA  372 (441)
Q Consensus       303 h~~~v~~l~~s~dg~~l~sgs~D---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  372 (441)
                       ..+-+.+.|+|.+++++.++-|   |.+.+||........   .  .+.......+.++||+..+.+...       ..
T Consensus       315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~---~--~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~  388 (561)
T COG5354         315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA---G--AFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS  388 (561)
T ss_pred             -CcccccccccCcccEEEEecCCccccceEEeccCCceEEE---E--EeecCCceEeeccCCceEEEecCCCcccccCcc
Confidence             1122345688888888887766   468888876532111   1  122223334567888887776543       26


Q ss_pred             eEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545          373 VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       373 ~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                      +++||+......        ..+.+.|-|.+++..|-|.+
T Consensus       389 i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~  420 (561)
T COG5354         389 IKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSC  420 (561)
T ss_pred             eEEEEecCchhh--------hhhhccccCCcccceeeccC
Confidence            899998543321        35667777777776655554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=3.3e-05  Score=71.96  Aligned_cols=225  Identities=17%  Similarity=0.119  Sum_probs=136.3

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe----cCCeeEEEeeccCCCCccEEEEEeC-CCcEEEE
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLC  175 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~las~s~-d~~I~vw  175 (441)
                      =|...|+-+...  -.+++.+++.|+.+|.|--..-.-+.-.+    +.+.+..++.+-   ...++.+... |..++++
T Consensus         7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEE
Confidence            366667666554  46799999999999999753211111111    112222333332   3456777666 9999999


Q ss_pred             ECCCCceeee--ecCCCCCeEEEEEecCCC--cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          176 DIASGAISQT--LSGHRDGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       176 dl~~~~~~~~--l~~h~~~v~~v~fsp~~~--~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      |+++-..+.-  +.--++.+.++ .+|...  .+.++.-.++.|.++|-+...|...                       
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~-----------------------  137 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG-----------------------  137 (558)
T ss_pred             EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccc-----------------------
Confidence            9987654321  11122222222 233322  2334444578888888653221000                       


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  331 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w  331 (441)
                                                                    -...-|..+|..+.+.+-+..++|....|.|..|
T Consensus       138 ----------------------------------------------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyW  171 (558)
T KOG0882|consen  138 ----------------------------------------------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYW  171 (558)
T ss_pred             ----------------------------------------------eecccccCceEEEEeeccccceeeccccceeEee
Confidence                                                          0012478899999999999999999999999999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                      .....   +. +....                          .-|.+....-+..+.--+....++.|+|+|..+.+-+.
T Consensus       172 s~e~~---~q-fPr~~--------------------------l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  172 SAEGP---FQ-FPRTN--------------------------LNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             cCCCc---cc-Ccccc--------------------------ccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            87631   00 00000                          01122222222333445566899999999999999999


Q ss_pred             CCcEEEeCCCCCCCCCccC
Q 013545          412 DRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       412 D~~i~vW~~~~~~~~~~~~  430 (441)
                      |..||++...++++-+...
T Consensus       222 DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ccEEEEEEeccchhhhhhh
Confidence            9999999999998765543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.07  E-value=0.0077  Score=53.99  Aligned_cols=105  Identities=17%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCC---
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHR---  190 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~---  190 (441)
                      +++++++++.++.|..||..+|+.+..+..++.+......   . ...+..++.++.+..+|+++|+.+... ....   
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---c-ccccccccceeeeEecccCCcceeeeecccccccc
Confidence            4567888899999999999999998888775543222111   1 124555567889999999999988773 3221   


Q ss_pred             --CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee
Q 013545          191 --DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF  226 (441)
Q Consensus       191 --~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~  226 (441)
                        .......+.  ++. ++.+..++.|..+|+++++.+
T Consensus       111 ~~~~~~~~~~~--~~~-~~~~~~~g~l~~~d~~tG~~~  145 (238)
T PF13360_consen  111 GVRSSSSPAVD--GDR-LYVGTSSGKLVALDPKTGKLL  145 (238)
T ss_dssp             STB--SEEEEE--TTE-EEEEETCSEEEEEETTTTEEE
T ss_pred             ccccccCceEe--cCE-EEEEeccCcEEEEecCCCcEE
Confidence              111223333  443 566777999999999988654

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.01  E-value=0.0064  Score=65.21  Aligned_cols=113  Identities=19%  Similarity=0.178  Sum_probs=74.6

Q ss_pred             cCeEEEEEccCCCEEEEeec---C---CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceE
Q 013545          305 GAVTGLKVTEDGMYLLSAGS---D---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVK  374 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~---D---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  374 (441)
                      +.-..|+|-.||.|+|..+-   .   +.+|+|+-+ |.  +.  .+-....+....+++.|.|.++++...    ..|-
T Consensus       210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~--L~--stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv  284 (928)
T PF04762_consen  210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE--LQ--STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV  284 (928)
T ss_pred             CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce--EE--eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence            34567999999999998775   2   579999865 32  11  111112233446789999998887644    1232


Q ss_pred             EEEccCCceEeeec----ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          375 AFDIWSGKTCLTFR----GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       375 ~wd~~~~~~~~~l~----gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      .|. .+|-....|.    .....|..++|++|+..||..-.|. |++|.....+
T Consensus       285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            332 3444444332    3456799999999999999866555 9999987665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.01  E-value=0.0071  Score=53.81  Aligned_cols=104  Identities=17%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec----CC----eeEEEeeccCCCCc---cEEEEEeCCCcEEEEE
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM----PG----KVYRTAMSPLAASH---MLIAAGTEDVQVRLCD  176 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~---~~las~s~d~~I~vwd  176 (441)
                      -++|+| |+.+||.+...|+|+++|+.... +..++.    .+    .+..+.|.....+.   ..|.+-..+|.++-|-
T Consensus        48 kl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   48 KLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             EEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            467775 88899999999999999986433 333321    11    12222222211111   1233445567776665


Q ss_pred             CCCC---c--eeee--ec-CCCCCeEEEEEecCCCcEEEEeecCC
Q 013545          177 IASG---A--ISQT--LS-GHRDGIMTVEWSTSSEWILVTGGCDG  213 (441)
Q Consensus       177 l~~~---~--~~~~--l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg  213 (441)
                      +..+   .  ...+  +. .+...|.++.|+|..+.+++.|....
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~  170 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN  170 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence            4322   1  2222  22 35789999999999876666555443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.00  E-value=0.0059  Score=59.53  Aligned_cols=260  Identities=12%  Similarity=0.094  Sum_probs=137.3

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR  137 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~  137 (441)
                      .++.++.+|.+..+|.++++..      ....         ..+   .+.+....  .+++++.+..++.+.-+|.++|+
T Consensus       122 ~v~v~~~~g~l~ald~~tG~~~------W~~~---------~~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~  181 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDGEVA------WQTK---------VAG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGA  181 (394)
T ss_pred             EEEEEcCCCEEEEEECCCCCCc------cccc---------CCC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCC
Confidence            5666778899999998877531      1000         000   11111011  13467777889999999999999


Q ss_pred             EEEEEecCCeeEEE--eeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC-------CeEEEEEec--CCCcEE
Q 013545          138 VVMNFKMPGKVYRT--AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-------GIMTVEWST--SSEWIL  206 (441)
Q Consensus       138 ~~~~~~~~~~~~~~--~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~-------~v~~v~fsp--~~~~~l  206 (441)
                      .+-.++........  ..+|.-... .+..++.++.+..+|.++|+.+...+-...       ....+..+|  .+.. +
T Consensus       182 ~~W~~~~~~~~~~~~~~~sP~v~~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-v  259 (394)
T PRK11138        182 VKWTVNLDVPSLTLRGESAPATAFG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-V  259 (394)
T ss_pred             EeeeecCCCCcccccCCCCCEEECC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-E
Confidence            88776654221110  112211112 355567789999999999987655431100       000011111  1233 3


Q ss_pred             EEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcc
Q 013545          207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR  286 (441)
Q Consensus       207 ~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (441)
                      +.++.+|.+...|+.+++..=..+                                                        
T Consensus       260 y~~~~~g~l~ald~~tG~~~W~~~--------------------------------------------------------  283 (394)
T PRK11138        260 YALAYNGNLVALDLRSGQIVWKRE--------------------------------------------------------  283 (394)
T ss_pred             EEEEcCCeEEEEECCCCCEEEeec--------------------------------------------------------
Confidence            456678888888887653210000                                                        


Q ss_pred             cccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEE
Q 013545          287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF  366 (441)
Q Consensus       287 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (441)
                                       .+....+.  .++..|..++.|+.+..+|..+++.... ...  .. ..........++.+++
T Consensus       284 -----------------~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~-~~~--~~-~~~~~sp~v~~g~l~v  340 (394)
T PRK11138        284 -----------------YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS-QSD--LL-HRLLTAPVLYNGYLVV  340 (394)
T ss_pred             -----------------CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc-ccc--cC-CCcccCCEEECCEEEE
Confidence                             00000111  1344566677788888888887753221 110  00 0000101112344433


Q ss_pred             EeCCCceEEEEccCCceEeeecccccceEE-EEEcCCCCeEEEeecCCcEEEeCC
Q 013545          367 VPCMTAVKAFDIWSGKTCLTFRGHYEYVNC-CCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       367 ~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~-v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ....+.+..+|..+|+.+....-+...+.. ..+  .+..|+.++.||.+..++.
T Consensus       341 ~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        341 GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            334467888999999987766543333322 222  2457777889999887764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.96  E-value=0.0099  Score=57.96  Aligned_cols=148  Identities=12%  Similarity=0.107  Sum_probs=85.3

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeeccc-cc-Cc-ccceeE-EEEeeCCCCEEEEEeCCCcEEEEE
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQH-EH-GH-KYAISS-AIWYPVDTGLFVTGSYDHYVKVWD  132 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~h-~~~V~~-~~~~~~~~~~l~sgs~D~~i~iWd  132 (441)
                      ..+..++.+|.+.-+|.++++..      ....    ..... .. .. ...+.+ ...   +++.++.++.++.+..+|
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~------W~~~----~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald  136 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEI------WSVD----LSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALN  136 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEe------eEEc----CCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEE
Confidence            36777788899988898877531      1100    00000 00 00 001111 111   245677788999999999


Q ss_pred             CCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe-----EEEEEecCCCcEEE
Q 013545          133 TNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILV  207 (441)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v-----~~v~fsp~~~~~l~  207 (441)
                      .++|+.+-+.+..+.+.......   + ..+..+..++.+..+|.++|+.+..+.......     .+-... ++ . ++
T Consensus       137 ~~tG~~~W~~~~~~~~~ssP~v~---~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~-v~  209 (394)
T PRK11138        137 AEDGEVAWQTKVAGEALSRPVVS---D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-G-AI  209 (394)
T ss_pred             CCCCCCcccccCCCceecCCEEE---C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-E-EE
Confidence            99999888777665443221111   1 245567778999999999999887665321110     111111 22 2 34


Q ss_pred             EeecCCcEEEEEcCCCc
Q 013545          208 TGGCDGAIRFWDIRRAG  224 (441)
Q Consensus       208 s~s~Dg~I~iWD~~~~~  224 (441)
                      .++.+|.+...|..+++
T Consensus       210 ~~~~~g~v~a~d~~~G~  226 (394)
T PRK11138        210 VGGDNGRVSAVLMEQGQ  226 (394)
T ss_pred             EEcCCCEEEEEEccCCh
Confidence            46678888888887664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.95  E-value=6.4e-05  Score=66.89  Aligned_cols=122  Identities=17%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             eeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee--eeEEec--cCcceEEEeeCCCc--EEEEeCCCceE
Q 013545          301 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF--ETVRLQ--TSKPIQLATTQDPA--VVFVPCMTAVK  374 (441)
Q Consensus       301 ~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~  374 (441)
                      .+|.--++++.|..|..+++++ .|=+|.+|+++.-...+...  ....+.  ...+...-+.|...  ..++.+.+.++
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            4677779999999999999876 57789999987543322111  000000  01111223333322  33455567888


Q ss_pred             EEEccCCceEe----------------eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          375 AFDIWSGKTCL----------------TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       375 ~wd~~~~~~~~----------------~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      +-|+....++.                -|.+-...|.++.|+|.|+++++-+ -.+++|||..-.+
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k  312 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK  312 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence            88876322211                1344456799999999999999763 4689999987443

>smart00320 WD40 WD40 repeats

Probab=97.95  E-value=2.3e-05  Score=47.27  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=34.0

Q ss_pred             ceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          382 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       382 ~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      +....+.+|...|.++.|+|+++++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.92  E-value=0.016  Score=52.93  Aligned_cols=139  Identities=19%  Similarity=0.256  Sum_probs=88.7

Q ss_pred             EEEccCCCCcEEEEeeCCCc-EEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC-
Q 013545           48 SLQVDLTEERYLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD-  125 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D-  125 (441)
                      .++.+|.....++.+-.-|+ ..+||+.++....         .+..-+..+++||.      +|++ ||.+|++.-.| 
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---------~~~a~~gRHFyGHg------~fs~-dG~~LytTEnd~   72 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---------RLWAPPGRHFYGHG------VFSP-DGRLLYTTENDY   72 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---------EEcCCCCCEEecCE------EEcC-CCCEEEEecccc
Confidence            46677766778888888888 6799998776421         11122356778883      4554 89888887554 


Q ss_pred             ----CcEEEEECC-CCeEEEEEecCCe-eEEEeeccCCCCccEEEEE----------------eCCCcEEEEECCCCcee
Q 013545          126 ----HYVKVWDTN-CTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAG----------------TEDVQVRLCDIASGAIS  183 (441)
Q Consensus       126 ----~~i~iWd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~----------------s~d~~I~vwdl~~~~~~  183 (441)
                          |.|-|||.. +...+.++...|. ...+.+.+++. ..++|-|                +.+-++.+.|..+|+++
T Consensus        73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll  151 (305)
T PF07433_consen   73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL  151 (305)
T ss_pred             CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence                789999998 5566666664332 23344455432 1122222                23445677778888876


Q ss_pred             ee--e--cCCCCCeEEEEEecCCC
Q 013545          184 QT--L--SGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       184 ~~--l--~~h~~~v~~v~fsp~~~  203 (441)
                      ..  +  ..|.-.+.-+++.+++.
T Consensus       152 ~q~~Lp~~~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen  152 EQVELPPDLHQLSIRHLAVDGDGT  175 (305)
T ss_pred             eeeecCccccccceeeEEecCCCc
Confidence            54  5  34777788888888875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.88  E-value=0.0026  Score=60.14  Aligned_cols=149  Identities=15%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-cEEEEECCCCceeeeecCC
Q 013545          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-QVRLCDIASGAISQTLSGH  189 (441)
Q Consensus       111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-~I~vwdl~~~~~~~~l~~h  189 (441)
                      +...+|++++..|. |...|.+...+-.+ +....+.+.-..+..+..   -++.|..|+ .+-++|..+++. +.+.+.
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~e---~~vigt~dgD~l~iyd~~~~e~-kr~e~~  400 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDPE---GDVIGTNDGDKLGIYDKDGGEV-KRIEKD  400 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEccCCc---ceEEeccCCceEEEEecCCceE-EEeeCC
Confidence            33447888888877 45566555444433 233444565555554433   466777888 899999988874 556677


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      -+.|.++..+|+|+.+ +.+.....|-+.|+.+++.- .+                                        
T Consensus       401 lg~I~av~vs~dGK~~-vvaNdr~el~vididngnv~-~i----------------------------------------  438 (668)
T COG4946         401 LGNIEAVKVSPDGKKV-VVANDRFELWVIDIDNGNVR-LI----------------------------------------  438 (668)
T ss_pred             ccceEEEEEcCCCcEE-EEEcCceEEEEEEecCCCee-Ee----------------------------------------
Confidence            8899999999999864 55555566777787765321 00                                        


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC----cEEEeeCCCCC
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS----RIRLWDVESGR  337 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~----~i~~wd~~~~~  337 (441)
                                                    .....+-|+..+|||+++++|-+=.+|    .|+++|+.+++
T Consensus       439 ------------------------------dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         439 ------------------------------DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             ------------------------------cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence                                          112346689999999999999877665    58999998865

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.85  E-value=0.00055  Score=69.44  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=75.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      ++..++-|+....+...|+++.+..........- ...+..   ++..+..|...|+|.+-|+++.+.++++..|.+.|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence            3457888888888889999888776655544321 111221   235788899999999999999999999999999998


Q ss_pred             EEEEecCCCcEEEEee---------cCCcEEEEEcCCC
Q 013545          195 TVEWSTSSEWILVTGG---------CDGAIRFWDIRRA  223 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s---------~Dg~I~iWD~~~~  223 (441)
                      .....  |. +|+|||         .|.-|++||+|.-
T Consensus       222 DfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  222 DFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             eeecc--CC-eEEEeecccccccccccchhhhhhhhhh
Confidence            87665  44 578887         3666888998853

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.84  E-value=0.023  Score=57.16  Aligned_cols=89  Identities=11%  Similarity=0.246  Sum_probs=61.1

Q ss_pred             ecCCCCceeEEEccCCC-----------CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccccee
Q 013545           39 VSPHKGSINSLQVDLTE-----------ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS  107 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~-----------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  107 (441)
                      +.-|...|+.+.|.|-.           .-.||++.-.|.|.|||...+...                 --...|.++|.
T Consensus        51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------~~l~~~~~~~q  113 (1062)
T KOG1912|consen   51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------NWLSHSNDSVQ  113 (1062)
T ss_pred             cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------hhhcCCCcchh
Confidence            45688999999987532           225788888899999998654321                 01224666777


Q ss_pred             EEEEeeC--CC-CEEEEEeCCCcEEEEECCCCeEEEEEec
Q 013545          108 SAIWYPV--DT-GLFVTGSYDHYVKVWDTNCTRVVMNFKM  144 (441)
Q Consensus       108 ~~~~~~~--~~-~~l~sgs~D~~i~iWd~~~~~~~~~~~~  144 (441)
                      .+.|.+.  +. ++|+.-..-.+|-+|+..+|+.+..+..
T Consensus       114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y  153 (1062)
T KOG1912|consen  114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY  153 (1062)
T ss_pred             heeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence            7777552  22 5676666778999999988887665544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.79  E-value=0.0041  Score=59.36  Aligned_cols=241  Identities=13%  Similarity=0.111  Sum_probs=139.6

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE---------------eCC
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG---------------TED  169 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~---------------s~d  169 (441)
                      ++..+.++| .|.+|++. .-.-|.+|+-.....+..+.++ .+..+.++|..   .+|.+=               ..+
T Consensus        34 p~~~~~~SP-~G~~l~~~-~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~---kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          34 PVAYVSESP-LGTYLFSE-HAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNE---KYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             chhheeecC-cchheehh-hccceEEccccchhheeeeecC-CceecccCccc---ceeeeeccCCccChhhccCCcccc
Confidence            455667776 57677654 4457999987766666666544 35555555542   233332               123


Q ss_pred             CcEEEEECCCCceeeeecCCCCC--eE-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545          170 VQVRLCDIASGAISQTLSGHRDG--IM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (441)
Q Consensus       170 ~~I~vwdl~~~~~~~~l~~h~~~--v~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (441)
                      +.+.+||+.+|.++..+.+...+  .+ -+.|+-++++. |=- .-.++.|+++ ++...    .  .     + ...  
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~-ARv-v~~sl~i~e~-t~n~~----~--~-----p-~~~--  170 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYV-ARV-VGSSLYIHEI-TDNIE----E--H-----P-FKN--  170 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhh-hhh-ccCeEEEEec-CCccc----c--C-----c-hhh--
Confidence            46999999999998888776555  55 67888887653 221 2346888886 22100    0  0     0 000  


Q ss_pred             ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--CEEE----
Q 013545          247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLL----  320 (441)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~----  320 (441)
                                                                             -....|..-.|+|.+  ..||    
T Consensus       171 -------------------------------------------------------lr~~gi~dFsisP~~n~~~la~~tP  195 (561)
T COG5354         171 -------------------------------------------------------LRPVGILDFSISPEGNHDELAYWTP  195 (561)
T ss_pred             -------------------------------------------------------ccccceeeEEecCCCCCceEEEEcc
Confidence                                                                   001123344444442  1222    


Q ss_pred             -EeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC------------CCceEEEEccCCceEeee
Q 013545          321 -SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC------------MTAVKAFDIWSGKTCLTF  387 (441)
Q Consensus       321 -sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~wd~~~~~~~~~l  387 (441)
                       .++.+.++++|.+..++..    .+..+-.-..+++-+...+..+.+-.            ..++.++++.........
T Consensus       196 Ek~~kpa~~~i~sIp~~s~l----~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~  271 (561)
T COG5354         196 EKLNKPAMVRILSIPKNSVL----VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK  271 (561)
T ss_pred             ccCCCCcEEEEEEccCCCee----eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec
Confidence             2567888999988855421    11122222234455555555443321            135667777643333332


Q ss_pred             cccccceEEEEEcCCCCeEEEe--ecCCcEEEeCCCCCCCCCc
Q 013545          388 RGHYEYVNCCCFSSQDQELYTG--GNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       388 ~gh~~~v~~v~fspd~~~l~s~--s~D~~i~vW~~~~~~~~~~  428 (441)
                       +-.++|.+++|+|+++.++..  -.+.++.++++.++.+-.+
T Consensus       272 -~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~  313 (561)
T COG5354         272 -DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF  313 (561)
T ss_pred             -cccccceeeeecccCCceeEEecccccceeecccccceEEec
Confidence             668999999999999987754  4788899999988765443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.015  Score=56.17  Aligned_cols=120  Identities=9%  Similarity=0.080  Sum_probs=73.4

Q ss_pred             cCeEEEEEccCCCEEEEeec---CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEE
Q 013545          305 GAVTGLKVTEDGMYLLSAGS---DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFD  377 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~---D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd  377 (441)
                      ..|...+|-|.|..++.-+.   -.++.+|-+++.........  .+.......+.++|.|..+++++.    +.+..+|
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk--~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK--ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh--hhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence            45788899999987665443   35788888874221111111  111223456788999998877643    4677787


Q ss_pred             ccCCceEe-eecccccceEEEEEcCCCCeEEEeec------CCcEEEeCCCCCCCCC
Q 013545          378 IWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISDG  427 (441)
Q Consensus       378 ~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~------D~~i~vW~~~~~~~~~  427 (441)
                      ..-..+.. ....|. ..+.+.|.|.|++++|++.      |.--++|+.+...+..
T Consensus       524 ~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~  579 (698)
T KOG2314|consen  524 TDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKE  579 (698)
T ss_pred             cchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHHH
Confidence            75322211 222343 3688999999999999865      3445666665544443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.00029  Score=70.41  Aligned_cols=153  Identities=13%  Similarity=0.178  Sum_probs=108.1

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      ...++|++++   +++|+-|.-+|.+++.+.+....           ..        .-|+..       ..+|.+++||
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~~-----------~~--------~~~s~~-------~~~Gey~asC   89 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNPK-----------TN--------FDHSSS-------ILEGEYVASC   89 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCCccc-----------cc--------cccccc-------ccCCceEEEe
Confidence            4788999996   47999999999999998763210           00        012211       3479999999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccC--CCCccEEEEEeCCCcEEEEECCCC-ce-eeeecCCCCCeEEEEE
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL--AASHMLIAAGTEDVQVRLCDIASG-AI-SQTLSGHRDGIMTVEW  198 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~las~s~d~~I~vwdl~~~-~~-~~~l~~h~~~v~~v~f  198 (441)
                      |.||+|.|-.+-+.+..+++.+.-++.+++++|+  ......+++|+.-| +.++.-+=- .. ...+..-.++|.++.|
T Consensus        90 S~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W  168 (846)
T KOG2066|consen   90 SDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW  168 (846)
T ss_pred             cCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe
Confidence            9999999999988888888888888888999987  33345678888777 766653211 11 1135566789999999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCceeeEe
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~  229 (441)
                      ..  . ++| -..|--|++||+.....+..+
T Consensus       169 ~g--~-lIA-Wand~Gv~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  169 RG--N-LIA-WANDDGVKVYDTPTRQRLTNI  195 (846)
T ss_pred             cC--c-EEE-EecCCCcEEEeccccceeecc
Confidence            74  3 333 445666999999876554433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.75  E-value=0.00036  Score=70.75  Aligned_cols=152  Identities=20%  Similarity=0.315  Sum_probs=106.4

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      .|+-|+.   +++++.+|..-|+|.+-|..+.+..                 ....+|++.|.+...   .|+.|+|||.
T Consensus       179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~i-----------------ht~~aHs~siSDfDv---~GNlLitCG~  235 (1118)
T KOG1275|consen  179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETI-----------------HTFDAHSGSISDFDV---QGNLLITCGY  235 (1118)
T ss_pred             ceEEEEe---cCcEEEeecccceEEeecCCcCcee-----------------eeeeccccceeeeec---cCCeEEEeec
Confidence            3666655   4689999999999999998755421                 123478888876655   4789999987


Q ss_pred             ---------CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC---CCC-ceeeeecCCCC
Q 013545          125 ---------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI---ASG-AISQTLSGHRD  191 (441)
Q Consensus       125 ---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl---~~~-~~~~~l~~h~~  191 (441)
                               |.-|++||++..+.+.-+.++-...-+.|+|.-.  ..+++++..|...+.|.   ... .-.+.+.....
T Consensus       236 S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s  313 (1118)
T KOG1275|consen  236 SMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS  313 (1118)
T ss_pred             ccccccccccchhhhhhhhhhhccCCcccccCchhhhhccccc--ceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence                     6778999998877665555443333445566433  35677778899999993   332 11233334455


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      .+.+..++++++ .|+-|..+|.|.+|--+.
T Consensus       314 ~i~~fDiSsn~~-alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  314 GISAFDISSNGD-ALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             cceeEEecCCCc-eEEEecccCcEeeecCCC
Confidence            589999999987 578899999999997443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.0047  Score=62.61  Aligned_cols=203  Identities=15%  Similarity=0.240  Sum_probs=121.2

Q ss_pred             ccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc-----EEEEEcCCCceeeEeccCCc
Q 013545          160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-----IRFWDIRRAGCFRVLDQSQS  234 (441)
Q Consensus       160 ~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~-----I~iWD~~~~~~~~~~~~~~~  234 (441)
                      ...++.|+.+|.|.+.+- .-+.++.+..+...+...-+.-++..+|+|-+.|+.     ++|||+....      ...+
T Consensus        35 ~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~------~n~s  107 (933)
T KOG2114|consen   35 TGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD------KNNS  107 (933)
T ss_pred             CceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC------CCCC
Confidence            446778888887777663 223346677666663333344444457888887764     8999986421      0000


Q ss_pred             cccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc
Q 013545          235 QLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE  314 (441)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  314 (441)
                           |.....                                         .+..+.      ...-...++.+|++|.
T Consensus       108 -----P~c~~~-----------------------------------------~ri~~~------~np~~~~p~s~l~Vs~  135 (933)
T KOG2114|consen  108 -----PQCLYE-----------------------------------------HRIFTI------KNPTNPSPASSLAVSE  135 (933)
T ss_pred             -----cceeee-----------------------------------------eeeecc------CCCCCCCcceEEEEEc
Confidence                 000000                                         000000      0001245788999999


Q ss_pred             CCCEEEEeecCCcEEEee--CCCCCceeeeeeeEEeccCcceEEEeeCCCcE-EEEeCCCceEEEEccCCc-eEeeeccc
Q 013545          315 DGMYLLSAGSDSRIRLWD--VESGRNTLVNFETVRLQTSKPIQLATTQDPAV-VFVPCMTAVKAFDIWSGK-TCLTFRGH  390 (441)
Q Consensus       315 dg~~l~sgs~D~~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wd~~~~~-~~~~l~gh  390 (441)
                      +-+.+|.|=.||.|.++-  +...+.....+.  .....++.-+++..++.. +++++...|.+|.+.... .+.++..|
T Consensus       136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~--~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~  213 (933)
T KOG2114|consen  136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYS--HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN  213 (933)
T ss_pred             cccEEEEEecCcEEEEEcCcchhccccceeee--ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC
Confidence            999999999999999984  333222211111  111233445667767665 677778899999997433 25668889


Q ss_pred             ccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          391 YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       391 ~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      ...++|..|++....++.|+ +..+.+++.+...
T Consensus       214 G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  214 GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             CccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence            99999999998765344333 4457788876433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.70  E-value=0.036  Score=50.08  Aligned_cols=223  Identities=16%  Similarity=0.161  Sum_probs=128.4

Q ss_pred             EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCc
Q 013545           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY  127 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~  127 (441)
                      +..|.+.++.++++--..+.|..||..++...           ++.       ..  ....+++...++ .|+.+..++ 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------~~~-------~~--~~~G~~~~~~~g-~l~v~~~~~-   61 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------VID-------LP--GPNGMAFDRPDG-RLYVADSGG-   61 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------EEE-------SS--SEEEEEEECTTS-EEEEEETTC-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------EEe-------cC--CCceEEEEccCC-EEEEEEcCc-
Confidence            45677656778888888899999998765421           010       00  133455553454 555555554 


Q ss_pred             EEEEECCCCeEEEEEec--C----CeeEEEeeccCCCCccEEEEEeCC--------CcEEEEECCCCceeeeecCCCCCe
Q 013545          128 VKVWDTNCTRVVMNFKM--P----GKVYRTAMSPLAASHMLIAAGTED--------VQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       128 i~iWd~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~las~s~d--------~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      +.++|+.+++.......  .    ...+.+.+.+.+  . +.++....        +.|..++.. ++..... ..-...
T Consensus        62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G--~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~p  136 (246)
T PF08450_consen   62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG--N-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFP  136 (246)
T ss_dssp             EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSE
T ss_pred             eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC--C-EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccc
Confidence            45559998876544433  1    224556666543  2 33333322        457777776 5533333 335556


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      ..++|+|+++.++++-+..+.|..+|+..... +...+.                                         
T Consensus       137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~-----------------------------------------  175 (246)
T PF08450_consen  137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV-----------------------------------------  175 (246)
T ss_dssp             EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE-----------------------------------------
T ss_pred             cceEECCcchheeecccccceeEEEeccccccceeeeee-----------------------------------------
Confidence            89999999987777778888888888753211 100000                                         


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                   ...           ...-.+..-.+++..+|+..++.-..+.|.++|.. ++.    ...+......
T Consensus       176 -------------~~~-----------~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~----~~~i~~p~~~  226 (246)
T PF08450_consen  176 -------------FID-----------FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL----LREIELPVPR  226 (246)
T ss_dssp             -------------EEE------------SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE----EEEEE-SSSS
T ss_pred             -------------EEE-----------cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE----EEEEcCCCCC
Confidence                         000           00001235678999999999988889999999988 542    2233334345


Q ss_pred             ceEEEee-CCCcEEEE
Q 013545          353 PIQLATT-QDPAVVFV  367 (441)
Q Consensus       353 ~~~~~~~-~~~~~~~~  367 (441)
                      +..+++. ++...+++
T Consensus       227 ~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  227 PTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEEEEEESTTSSEEEE
T ss_pred             EEEEEEECCCCCEEEE
Confidence            6667773 55555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0015  Score=65.59  Aligned_cols=155  Identities=18%  Similarity=0.272  Sum_probs=101.4

Q ss_pred             ecCCCCceeEEEccCC------------CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccce
Q 013545           39 VSPHKGSINSLQVDLT------------EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI  106 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~------------~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  106 (441)
                      +..|.+.|.-..+...            +|.|++|||.||+|.|-.+.+....                  +...-..++
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~------------------~~~df~rpi  115 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI------------------TQYDFKRPI  115 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc------------------eeEecCCcc
Confidence            4578888887776533            3889999999999999887655421                  001122356


Q ss_pred             eEEEEeeC----CCCEEEEEeCCCcEEEEECC---CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545          107 SSAIWYPV----DTGLFVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (441)
Q Consensus       107 ~~~~~~~~----~~~~l~sgs~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~  179 (441)
                      .+++++|.    ...++++||.-| +-++.=+   ....+......|.+.++.+..     .++|=++.+| |++||+.+
T Consensus       116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g-----~lIAWand~G-v~vyd~~~  188 (846)
T KOG2066|consen  116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG-----NLIAWANDDG-VKVYDTPT  188 (846)
T ss_pred             eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC-----cEEEEecCCC-cEEEeccc
Confidence            66666653    356899999988 6666421   112222234567788877764     3677666555 99999999


Q ss_pred             CceeeeecCCCCCe------EEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          180 GAISQTLSGHRDGI------MTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       180 ~~~~~~l~~h~~~v------~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      ++.+..++.....+      ..+.|.++..  |+- |+--+|+|..++
T Consensus       189 ~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  189 RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVI-GWGDSVKICSIK  233 (846)
T ss_pred             cceeeccCCCCCCCCcccCCCceEecCCCe--EEE-ecCCeEEEEEEe
Confidence            88776655332322      3577877653  343 577789999887

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.68  E-value=1e-05  Score=78.43  Aligned_cols=170  Identities=18%  Similarity=0.257  Sum_probs=106.6

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEe----eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSG----ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  111 (441)
                      .++.++|....++++|++-+..+||.|    -.|-.+.|||+.+.-..+      .....+..      +...++.+++|
T Consensus        95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP------ke~~~fs~------~~l~gqns~cw  162 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP------KESPLFSS------STLDGQNSVCW  162 (783)
T ss_pred             ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC------cccccccc------ccccCcccccc
Confidence            466778999999999998766667666    235678999997653211      00011100      12223445666


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC--CceeeeecC
Q 013545          112 YPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS--GAISQTLSG  188 (441)
Q Consensus       112 ~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~--~~~~~~l~~  188 (441)
                      . .+.+++++|...+.+.++|++.... ...+. ...+..+.+.|+.  ..++++-. |+.|.+||...  .++++.+..
T Consensus       163 l-rd~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~--~nY~cs~~-dg~iAiwD~~rnienpl~~i~~  237 (783)
T KOG1008|consen  163 L-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFS--PNYFCSNS-DGDIAIWDTYRNIENPLQIILR  237 (783)
T ss_pred             c-cCcchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCC--CCceeccc-cCceeeccchhhhccHHHHHhh
Confidence            6 4778899999999999999873221 11111 1123334455543  34666654 99999999422  233333332


Q ss_pred             CCC----CeEEEEEecCCCcEEEEeecC-CcEEEEEcCC
Q 013545          189 HRD----GIMTVEWSTSSEWILVTGGCD-GAIRFWDIRR  222 (441)
Q Consensus       189 h~~----~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~  222 (441)
                      .+.    .+..++|+|-...++++.+.| ++|+++|+..
T Consensus       238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            222    489999999877778888776 7999999874

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.0076  Score=55.95  Aligned_cols=73  Identities=15%  Similarity=0.379  Sum_probs=62.8

Q ss_pred             eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545          148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (441)
Q Consensus       148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~  223 (441)
                      +..++++|...  -++..++.+..|+|.|+++......+..| ..+++.+|.-+....+..|-.+|.|-+||+|..
T Consensus       196 IrdlafSp~~~--GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  196 IRDLAFSPFNE--GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             hhhhccCcccc--ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            66778888643  37888899999999999999888888777 789999999988888889999999999999864

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.0024  Score=64.47  Aligned_cols=102  Identities=17%  Similarity=0.303  Sum_probs=77.0

Q ss_pred             CCCEEEEEeC----CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545          115 DTGLFVTGSY----DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       115 ~~~~l~sgs~----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                      ..++||.++-    -|.|.|+ ..+|++-.....+-++.+++|+|-   ..+|++|-.-|.+.+|...+.+.......|+
T Consensus        26 sePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe---~~vLa~gwe~g~~~v~~~~~~e~htv~~th~  101 (1416)
T KOG3617|consen   26 SEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPE---EFVLAQGWEMGVSDVQKTNTTETHTVVETHP  101 (1416)
T ss_pred             CCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChH---HHHHhhccccceeEEEecCCceeeeeccCCC
Confidence            4556665543    4677777 345554443444444566777773   4688999999999999999888776777899


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      .++..+.|||+|. .|+|+..=|.+.+|...
T Consensus       102 a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  102 APIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            9999999999997 57899999999999765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.56  E-value=0.0043  Score=60.56  Aligned_cols=91  Identities=15%  Similarity=0.186  Sum_probs=65.8

Q ss_pred             EEEEECCCCceeee---ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545          172 VRLCDIASGAISQT---LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL  248 (441)
Q Consensus       172 I~vwdl~~~~~~~~---l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (441)
                      -.+|++..++..+.   --.....|.|.+++|+.+. |+.|+.||+|.+||...+....                     
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~---------------------  295 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLL---------------------  295 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeee---------------------
Confidence            35677665543211   1246788999999999875 6889999999999986531100                     


Q ss_pred             ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcE
Q 013545          249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  328 (441)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i  328 (441)
                                                                          ..+.-.++.++|||+|..+++|+.-|.+
T Consensus       296 ----------------------------------------------------~ka~~~P~~iaWHp~gai~~V~s~qGel  323 (545)
T PF11768_consen  296 ----------------------------------------------------AKAEFIPTLIAWHPDGAIFVVGSEQGEL  323 (545)
T ss_pred             ----------------------------------------------------eeecccceEEEEcCCCcEEEEEcCCceE
Confidence                                                                0011235678999999999999999999


Q ss_pred             EEeeCCCC
Q 013545          329 RLWDVESG  336 (441)
Q Consensus       329 ~~wd~~~~  336 (441)
                      .+||+.-.
T Consensus       324 Q~FD~ALs  331 (545)
T PF11768_consen  324 QCFDMALS  331 (545)
T ss_pred             EEEEeecC
Confidence            99998743

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0053  Score=56.94  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ++.+|...|-.|+|||.+..+|..++.+.+|+|.|+++....                 .....| ..+++++|.-.+..
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-----------------ssy~a~-~~~wSC~wDlde~h  249 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-----------------SSYIAY-NQIWSCCWDLDERH  249 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceee-----------------eheecc-CCceeeeeccCCcc
Confidence            556788899999999877668999999999999999865321                 111234 57889999776777


Q ss_pred             EEEEEeCCCcEEEEECCCC
Q 013545          118 LFVTGSYDHYVKVWDTNCT  136 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~  136 (441)
                      ++..|-..|.|-|+|++..
T Consensus       250 ~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  250 VIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eeEEeccCceEEEEEccCC
Confidence            8888888999999998753

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.49  E-value=0.001  Score=64.68  Aligned_cols=87  Identities=22%  Similarity=0.381  Sum_probs=64.1

Q ss_pred             EEECCCCeE----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE
Q 013545          130 VWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI  205 (441)
Q Consensus       130 iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~  205 (441)
                      +|++...++    +..++++..+.+++.+|..   ..|+.|+.||+|.+||...+...  +..+.-.++.++|+|+|. +
T Consensus       240 iYE~~r~klqrvsvtsipL~s~v~~ca~sp~E---~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga-i  313 (545)
T PF11768_consen  240 IYECSRNKLQRVSVTSIPLPSQVICCARSPSE---DKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA-I  313 (545)
T ss_pred             EEEeecCceeEEEEEEEecCCcceEEecCccc---ceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc-E
Confidence            455544332    3445667778888887753   47888999999999999776432  223445568999999997 6


Q ss_pred             EEEeecCCcEEEEEcCC
Q 013545          206 LVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       206 l~s~s~Dg~I~iWD~~~  222 (441)
                      ++.|+..|.+++||+.-
T Consensus       314 ~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEcCCceEEEEEeec
Confidence            78899999999999863

>smart00320 WD40 WD40 repeats

Probab=97.49  E-value=0.00026  Score=42.35  Aligned_cols=38  Identities=32%  Similarity=0.677  Sum_probs=32.6

Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (441)
Q Consensus       181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD  219 (441)
                      +++..+..|...|.++.|.|.+. ++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            45567778999999999999876 678999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.0011  Score=63.73  Aligned_cols=101  Identities=12%  Similarity=0.092  Sum_probs=67.3

Q ss_pred             eEEEEEccCCCEEEEeecC-----------CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEE
Q 013545          307 VTGLKVTEDGMYLLSAGSD-----------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKA  375 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs~D-----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (441)
                      |.-+.|||+.+||+|=|..           ..++|||+.+|... ..|+..+.....-..+-++.|..+++.-...++.+
T Consensus       252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI  330 (698)
T KOG2314|consen  252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI  330 (698)
T ss_pred             ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-cceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence            6778999999999985542           57899999998632 22333221112223456778888877766788888


Q ss_pred             EEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545          376 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT  408 (441)
Q Consensus       376 wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s  408 (441)
                      ++..+-.++..-.-....|....|||-+..||-
T Consensus       331 yEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  331 YETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EecCceeeecccccCCccccCcccCCCcceEEE
Confidence            887654443322233456888999998777763

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.036  Score=55.86  Aligned_cols=115  Identities=22%  Similarity=0.378  Sum_probs=87.2

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCC---------CCccEEEEEeCCCcEEEEEC
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLA---------ASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~las~s~d~~I~vwdl  177 (441)
                      ++.|++  +.++|-|+.. .|.+-|..+.+.+..+.++ ..+..+.+.|..         ....+||++.-.|.|.+||.
T Consensus        20 A~Dw~~--~GLiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~   96 (1062)
T KOG1912|consen   20 AADWSP--SGLIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF   96 (1062)
T ss_pred             ccccCc--cceEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence            445654  4588888775 7888898888888777654 446666665532         13457888888999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecC---CCcEEEEeecCCcEEEEEcCCCce
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRRAGC  225 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~---~~~~l~s~s~Dg~I~iWD~~~~~~  225 (441)
                      ..+..+..+..|.+.+..+.|-|.   ++.+|+.-+.-.+|.+|+..+|..
T Consensus        97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence            999888889999999988888764   445677777788999999988754

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.30  E-value=0.011  Score=59.07  Aligned_cols=103  Identities=11%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             EEEEEeCCCcEEEEEC---CCCeEEEEEecCCeeEEEeeccCC-----CCccEEEEEeCCCcEEEEECCC-----Cceee
Q 013545          118 LFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLA-----ASHMLIAAGTEDVQVRLCDIAS-----GAISQ  184 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~las~s~d~~I~vwdl~~-----~~~~~  184 (441)
                      ..+..+.|+..-....   +.+..+..+.....-..+.+....     ........  .++.|.+.|..+     .+.+.
T Consensus       238 d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~  315 (635)
T PRK02888        238 DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR  315 (635)
T ss_pred             ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE
Confidence            4666677887666553   444444433322221222232210     01112222  256799999988     34555


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~  223 (441)
                      .+. =......+.++||++++++++..+.+|.+.|+.+.
T Consensus       316 yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        316 YVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             EEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence            554 23445789999999999999989999999999753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.27  E-value=0.031  Score=55.77  Aligned_cols=123  Identities=14%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.||++.|--+.|+ .+.+-|-|...+|-|.+|-+.++.=.+.  -+             ....+..|.++.|.. ||
T Consensus        65 QtLeGH~~sV~vvTWN-e~~QKLTtSDt~GlIiVWmlykgsW~EE--Mi-------------NnRnKSvV~SmsWn~-dG  127 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWN-ENNQKLTTSDTSGLIIVWMLYKGSWCEE--MI-------------NNRNKSVVVSMSWNL-DG  127 (1189)
T ss_pred             hhhccCcceEEEEEec-cccccccccCCCceEEEEeeecccHHHH--Hh-------------hCcCccEEEEEEEcC-CC
Confidence            4567999999999998 4455688999999999999876642210  00             011223344555543 55


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                      ..+...-.||.|.+=.+... .+....+.+. ..-+.++++.   .++..+-.+|.+.++|.+..
T Consensus       128 ~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D~---~~~Lf~~ange~hlydnqgn  188 (1189)
T KOG2041|consen  128 TKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSEDL---EQALFKKANGETHLYDNQGN  188 (1189)
T ss_pred             cEEEEEEccCCEEEEeeccc-eecchhcchheccceeecccH---HHHHhhhcCCcEEEeccccc
Confidence            55555555555544333211 1111111111 1123455542   34445677899999998644

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.25  E-value=0.00028  Score=71.29  Aligned_cols=72  Identities=18%  Similarity=0.311  Sum_probs=56.5

Q ss_pred             eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC-cEEEEEcCC
Q 013545          148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-AIRFWDIRR  222 (441)
Q Consensus       148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-~I~iWD~~~  222 (441)
                      ..+++|+..   ...|+.|+-.|.|+++++.+|.......+|.++|+-+.=+.+|...|.++++.. -..+|++.+
T Consensus      1104 fTc~afs~~---~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1104 FTCIAFSGG---TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             eeeEEeecC---CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            445556553   346889999999999999999988889999999999998888886665555544 577888753

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.20  E-value=0.027  Score=43.10  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=65.3

Q ss_pred             eeEEEEeeCCC---CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545          106 ISSAIWYPVDT---GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (441)
Q Consensus       106 V~~~~~~~~~~---~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~  182 (441)
                      |.+++++..++   +-|+.||.|..||+|+-  ...+..++..+.+..+.-...    ..++-+..+|+|-+|+-  ...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~----~~F~Y~l~NGTVGvY~~--~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG----GRFAYALANGTVGVYDR--SQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC----CEEEEEecCCEEEEEeC--cce
Confidence            45566555443   47999999999999974  366667776666665544332    35888899999999975  333


Q ss_pred             eeeecCCCCCeEEEEEec---CCCcEEEEeecCCcEE
Q 013545          183 SQTLSGHRDGIMTVEWST---SSEWILVTGGCDGAIR  216 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp---~~~~~l~s~s~Dg~I~  216 (441)
                      +..++.- ..+.++.+..   +|..-|++|=.+|.|-
T Consensus        74 lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4444432 2355655443   2333467887777764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.13  Score=52.71  Aligned_cols=210  Identities=15%  Similarity=0.196  Sum_probs=117.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-----cEEEEECCCC------cee
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASG------AIS  183 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-----~I~vwdl~~~------~~~  183 (441)
                      .+..++-|+.||.|-+.+-. -+.+..++....- .+.+-.......+|++-..|.     .+++||++.-      .++
T Consensus        34 ~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~  111 (933)
T KOG2114|consen   34 STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL  111 (933)
T ss_pred             CCceEEEeeccccEEEeccc-ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence            57799999999988777532 1222333321111 111111122334555555444     4899999632      222


Q ss_pred             e--eecC-----CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          184 Q--TLSG-----HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       184 ~--~l~~-----h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      .  .+.+     .+.++.+++.+.+-+ .+|.|=.||.|-.+-=.   ..+.                   .        
T Consensus       112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GD---i~RD-------------------r--------  160 (933)
T KOG2114|consen  112 YEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGD---ILRD-------------------R--------  160 (933)
T ss_pred             eeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCc---chhc-------------------c--------
Confidence            1  1222     356688899988865 46788888988877311   0000                   0        


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                +. ...          ....-..+|++|++-.+++.++=...-.+|.+|.+...
T Consensus       161 --------------------------gs-r~~----------~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  161 --------------------------GS-RQD----------YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             --------------------------cc-cee----------eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence                                      00 000          00011357999999999987333334467999999843


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcE-EEEeCCCceEEEEccCCceEeeec-ccccceEEEE
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAV-VFVPCMTAVKAFDIWSGKTCLTFR-GHYEYVNCCC  398 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wd~~~~~~~~~l~-gh~~~v~~v~  398 (441)
                      .+..+   . .-..+.+..+....+++. ++++....+..|+....+.+-+|. ||+..+.++.
T Consensus       204 ~p~~~---~-ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~  263 (933)
T KOG2114|consen  204 TPSLK---V-LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFS  263 (933)
T ss_pred             Cccee---e-eccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEe
Confidence            21111   1 112333444444455555 666666788999988777777887 8877665543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.05  E-value=0.019  Score=59.61  Aligned_cols=106  Identities=13%  Similarity=0.174  Sum_probs=69.2

Q ss_pred             eeCCCCEEEE-EeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCC----CccEEEEEeCCCcEEEEECCCC--ceee
Q 013545          112 YPVDTGLFVT-GSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA----SHMLIAAGTEDVQVRLCDIASG--AISQ  184 (441)
Q Consensus       112 ~~~~~~~l~s-gs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~las~s~d~~I~vwdl~~~--~~~~  184 (441)
                      +..+..+|+. ......|.--|++.|+++..++.+..+....+.|...    ...-...|-.++.+..||.+-.  +++.
T Consensus       489 ~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  489 HDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             hccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence            3334555443 3456788888999999999998865443344444321    1112345667889999998753  2221


Q ss_pred             -eec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545          185 -TLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (441)
Q Consensus       185 -~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD  219 (441)
                       ...  ......+|++-..+|.  +|.||.+|.||+||
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd  604 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGY--IAVGSNKGDIRLYD  604 (794)
T ss_pred             ccccccccCCCceEEEecCCce--EEEEeCCCcEEeec
Confidence             111  1344578888888774  68999999999998

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.04  E-value=0.28  Score=45.71  Aligned_cols=241  Identities=15%  Similarity=0.122  Sum_probs=123.1

Q ss_pred             CCCcEEEEECCCCeEEEEEecCCe-eEE-------EeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPGK-VYR-------TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      ....|.+||..+-.+...+.++.+ -..       +.++.++. ..++.-.+.-.+|.|.|++.++.+.++.-..    |
T Consensus        65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C  139 (342)
T PF06433_consen   65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----C  139 (342)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEGTS----E
T ss_pred             ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecCCC----E
Confidence            356799999999999888887764 211       12222211 1223333444568888888888777664221    2


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC-CCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR-PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      ...-|.++.-|.+-+.||++.-..+...+....- . ...+... .++....                        ....
T Consensus       140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~-~-t~~F~~~~dp~f~~~------------------------~~~~  193 (342)
T PF06433_consen  140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK-S-TKVFDPDDDPLFEHP------------------------AYSR  193 (342)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE-E-EEESSTTTS-B-S--------------------------EEET
T ss_pred             EEEEecCCCceEEEecCCceEEEEECCCCCEeEe-e-ccccCCCCccccccc------------------------ceEC
Confidence            2333444344677788999999888743221100 0 0000000 0000000                        0000


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                      ..+.                   --+....+.|..++++.+.-.+        ..-|.+.+....     ......++-.
T Consensus       194 ~~~~-------------------~~F~Sy~G~v~~~dlsg~~~~~--------~~~~~~~t~~e~-----~~~WrPGG~Q  241 (342)
T PF06433_consen  194 DGGR-------------------LYFVSYEGNVYSADLSGDSAKF--------GKPWSLLTDAEK-----ADGWRPGGWQ  241 (342)
T ss_dssp             TTTE-------------------EEEEBTTSEEEEEEETTSSEEE--------EEEEESS-HHHH-----HTTEEE-SSS
T ss_pred             CCCe-------------------EEEEecCCEEEEEeccCCcccc--------cCcccccCcccc-----ccCcCCccee
Confidence            0000                   0011234556667776655322        223444321100     0011223333


Q ss_pred             EEEeeCCCcEEEEeC-----------CCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEe-ecCCcEEEeCCC
Q 013545          355 QLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTG-GNDRQILVWCPS  421 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~-----------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~-s~D~~i~vW~~~  421 (441)
                      .+++.+....+++-.           ...+-++|+.+++.+..+.. ..++.+|++|.|.+ +|++. ..++.+.+||..
T Consensus       242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred             eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence            455555444444321           12477778999999888774 24588999999987 56554 457899999999


Q ss_pred             CCCCCCc
Q 013545          422 RHISDGV  428 (441)
Q Consensus       422 ~~~~~~~  428 (441)
                      ++++.+.
T Consensus       321 tGk~~~~  327 (342)
T PF06433_consen  321 TGKLVRS  327 (342)
T ss_dssp             T--EEEE
T ss_pred             CCcEEee
Confidence            9886544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.00  E-value=0.38  Score=46.59  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=76.2

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CC--Cce----------eccceeEEeec-------------cc
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GG--GHI----------AKHRSVFVVDK-------------QH   98 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~--~~~----------~~~~~~~~~~~-------------~~   98 (441)
                      .|+.+.|++...+ |+.|-..|.+-||.......+. ..  ...          .....+..+..             ..
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5888999865454 8888889999998654332221 00  000          00011111110             01


Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------eeEEEeecc-----CCCCccEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------KVYRTAMSP-----LAASHMLIA  164 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~la  164 (441)
                      .....+.|++++.+  |-.++|.|..||++.|.|++....+.......         .+..+.|..     +..+..++.
T Consensus        82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            12346788888876  45699999999999999999888887654432         233444442     233457889


Q ss_pred             EEeCCCcEEEEECC
Q 013545          165 AGTEDVQVRLCDIA  178 (441)
Q Consensus       165 s~s~d~~I~vwdl~  178 (441)
                      +|+..|.+.+|.+-
T Consensus       160 vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  160 VGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEe
Confidence            99999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.90  E-value=0.16  Score=54.09  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=70.5

Q ss_pred             EEEEEccCCCEEEE-----eecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEc
Q 013545          308 TGLKVTEDGMYLLS-----AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDI  378 (441)
Q Consensus       308 ~~l~~s~dg~~l~s-----gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~  378 (441)
                      ++|.|--||.++|+     ...-+.|++||-+ +....    .-........++++.|.|..+++...    +.+..|.-
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns----~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS----TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc----ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence            46899999999887     3333899999977 32110    00111222345778888877766532    23555543


Q ss_pred             cCC----ceEeeecccccceEEEEEcCCCCeEEE---eecCCcEEEeCCCCCC
Q 013545          379 WSG----KTCLTFRGHYEYVNCCCFSSQDQELYT---GGNDRQILVWCPSRHI  424 (441)
Q Consensus       379 ~~~----~~~~~l~gh~~~v~~v~fspd~~~l~s---~s~D~~i~vW~~~~~~  424 (441)
                       +|    .....+.....+|..++|+.++..|+.   ......|++|.....+
T Consensus       274 -NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  274 -NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             -CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence             23    222234455566999999999999987   5555669999886544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.78  E-value=0.13  Score=39.45  Aligned_cols=104  Identities=17%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             eeEEEccC---CCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           46 INSLQVDL---TEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        46 V~~l~~s~---~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      |++|++..   ++.+-|+.||.|..||||+-....              ..+      .-+..|.++....  ..+|+.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~--------------~Ei------~e~~~v~~L~~~~--~~~F~Y~   59 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV--------------AEI------TETDKVTSLCSLG--GGRFAYA   59 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE--------------EEE------ecccceEEEEEcC--CCEEEEE
Confidence            67776542   223579999999999999854211              111      1123455555543  4689999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCeeEEEeecc-CCCCccEEEEEeCCCcEE
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSP-LAASHMLIAAGTEDVQVR  173 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~las~s~d~~I~  173 (441)
                      -.+|+|-+|+-.  ..+...+....+.++.+.. ...+..-|++|-.+|.|.
T Consensus        60 l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   60 LANGTVGVYDRS--QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ecCCEEEEEeCc--ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999998888642  2222222222333333332 223344577787777764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.77  E-value=0.0033  Score=54.12  Aligned_cols=106  Identities=18%  Similarity=0.256  Sum_probs=66.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-CCeE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DGIM  194 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-~~v~  194 (441)
                      +.-++.|+.|+.|.+|.....-........+...-....|...+..+..++..|+.|+.|+++-++.+....+|. ..+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            456889999999999987521111111111111111223344445578889999999999999988877777777 5555


Q ss_pred             EEEEecCCCcEEEEe--ecCCcEEEEEcCC
Q 013545          195 TVEWSTSSEWILVTG--GCDGAIRFWDIRR  222 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~--s~Dg~I~iWD~~~  222 (441)
                      ....+..++ +++++  |.|..++.|++..
T Consensus       150 ~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDE-FLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCc-eEEeeccccchhhhhcchhh
Confidence            544444444 45555  6777777777654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.72  E-value=0.78  Score=46.11  Aligned_cols=117  Identities=15%  Similarity=0.230  Sum_probs=65.5

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccccee-EEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS-SAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~l~sgs~D~~i~iWd~~~~  136 (441)
                      .+..++.|+.+.-.|..+++..      .....    ...........+. .+...  +++.++.++.|+.|.-+|.+++
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~------W~~~~----~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG  130 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVL------WRYDP----KLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETG  130 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhh------ceeCC----CCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCC
Confidence            5777788899999998877531      00000    0000000000000 01111  2257888889999999999999


Q ss_pred             eEEEEEecCCee---EEEeeccCCCCccEEEEEe---------CCCcEEEEECCCCceeeeec
Q 013545          137 RVVMNFKMPGKV---YRTAMSPLAASHMLIAAGT---------EDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       137 ~~~~~~~~~~~~---~~~~~~~~~~~~~~las~s---------~d~~I~vwdl~~~~~~~~l~  187 (441)
                      +.+-.+......   ..+..+|.-.. .+++.++         .++.+..+|.++|+.+..+.
T Consensus       131 ~~~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         131 KQVWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             CEeeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            998877665431   11111221111 2344443         35788999999999877654

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.70  E-value=0.017  Score=57.52  Aligned_cols=114  Identities=21%  Similarity=0.348  Sum_probs=77.6

Q ss_pred             CCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCc
Q 013545          156 LAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS  234 (441)
Q Consensus       156 ~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~  234 (441)
                      +.....+++.|++-|.+.+|+-..++... ...+-.+.+.....+++. +++|.|+..|.|.++-+....          
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~----------  109 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKEL----------  109 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccC----------
Confidence            33345689999999999999988876543 233434444556667665 567888888888888765310          


Q ss_pred             cccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc
Q 013545          235 QLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE  314 (441)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  314 (441)
                           ++..         .                                  .+.+.       .+.|...|++++|++
T Consensus       110 -----p~~~---------~----------------------------------~~t~~-------d~~~~~rVTal~Ws~  134 (726)
T KOG3621|consen  110 -----PRDL---------D----------------------------------YVTPC-------DKSHKCRVTALEWSK  134 (726)
T ss_pred             -----CCcc---------e----------------------------------eeccc-------cccCCceEEEEEecc
Confidence                 0000         0                                  00000       123677899999999


Q ss_pred             CCCEEEEeecCCcEEEeeCCC
Q 013545          315 DGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       315 dg~~l~sgs~D~~i~~wd~~~  335 (441)
                      |++.+.+|..-|+|.+-.+.+
T Consensus       135 ~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  135 NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cccEEeecCCCceEEEEEech
Confidence            999999999999999988776

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.13  Score=50.00  Aligned_cols=106  Identities=18%  Similarity=0.245  Sum_probs=72.5

Q ss_pred             eCCCCE-EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccE----EEEEeCCCcEEEEECCCC-c-eeee
Q 013545          113 PVDTGL-FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHML----IAAGTEDVQVRLCDIASG-A-ISQT  185 (441)
Q Consensus       113 ~~~~~~-l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----las~s~d~~I~vwdl~~~-~-~~~~  185 (441)
                      ..+.++ |.++..-..+.--|++.|+.+..++....+..+.+.|+.....+    -..|-+|+.|.-||.+-. + .+..
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            334444 45666677788889999999999998877777777776544332    234667899999998632 2 2222


Q ss_pred             ecCC----CCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545          186 LSGH----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       186 l~~h----~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~  220 (441)
                      .++|    .....|.+-..+|  .+|.||.+|.||+||-
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR  458 (644)
T ss_pred             eeccccccccccceeeecCCc--eEEEeecCCcEEeehh
Confidence            2333    2345677766666  3688999999999984

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.45  E-value=0.73  Score=42.41  Aligned_cols=96  Identities=16%  Similarity=0.148  Sum_probs=62.6

Q ss_pred             EEEeeCCCCEEEEEeCCCc-EEEEECCCCeEEEEEecC-CeeE--EEeeccCCCCccEEEEE-----eCCCcEEEEECC-
Q 013545          109 AIWYPVDTGLFVTGSYDHY-VKVWDTNCTRVVMNFKMP-GKVY--RTAMSPLAASHMLIAAG-----TEDVQVRLCDIA-  178 (441)
Q Consensus       109 ~~~~~~~~~~l~sgs~D~~-i~iWd~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~las~-----s~d~~I~vwdl~-  178 (441)
                      ++.+|.+...++-+-.-++ ..+||..+++....+..+ +..+  --.|++++.   +|.+.     ...|.|-|||.. 
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~---~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR---LLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC---EEEEeccccCCCcEEEEEEECcC
Confidence            4455555666666766655 567999999987766532 2111  123555432   44332     335789999998 


Q ss_pred             CCceeeeecCCCCCeEEEEEecCCCcEEE
Q 013545          179 SGAISQTLSGHRDGIMTVEWSTSSEWILV  207 (441)
Q Consensus       179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~  207 (441)
                      +-+.+.++..|.-..--+.+.|+++.+++
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvV  115 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVV  115 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEE
Confidence            55667788888777778889999976543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.42  E-value=0.068  Score=55.65  Aligned_cols=99  Identities=21%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCC-e-EEE----EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCT-R-VVM----NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSG  188 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~  188 (441)
                      ....+.|=.+..+..||.+-. . ++.    .+.......+++.+.    .-.||+|+.+|.||+||- .|+..+ .|++
T Consensus       542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~-~g~~AKT~lp~  616 (794)
T PF08553_consen  542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE----DGYIAVGSNKGDIRLYDR-LGKRAKTALPG  616 (794)
T ss_pred             CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC----CceEEEEeCCCcEEeecc-cchhhhhcCCC
Confidence            345667778889999998743 2 221    111111122222222    236999999999999994 454444 4667


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      -..+|..|..+.||+|+|+||  +..+-|.|+.
T Consensus       617 lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  617 LGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             CCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            789999999999999988876  6789999863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.31  E-value=2.1  Score=46.13  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=45.9

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      +.|.++.|- .+...+.-+..+|.|.+=|.++......+                  .-..+|.++.|+| |.+.++-..
T Consensus        69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~eivg------------------~vd~GI~aaswS~-Dee~l~liT  128 (1265)
T KOG1920|consen   69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLELEIVG------------------NVDNGISAASWSP-DEELLALIT  128 (1265)
T ss_pred             cceEEEEEe-cccceEEEEecCCcEEEEcccccceeeee------------------eccCceEEEeecC-CCcEEEEEe
Confidence            589999986 45556777788888888787654321100                  1234688888887 788888777


Q ss_pred             CCCcEEE
Q 013545          124 YDHYVKV  130 (441)
Q Consensus       124 ~D~~i~i  130 (441)
                      .++++-+
T Consensus       129 ~~~tll~  135 (1265)
T KOG1920|consen  129 GRQTLLF  135 (1265)
T ss_pred             CCcEEEE
Confidence            7777765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=1.2  Score=43.15  Aligned_cols=222  Identities=17%  Similarity=0.126  Sum_probs=136.9

Q ss_pred             EEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe--CCCcEEEEECCCCceeeee
Q 013545          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTL  186 (441)
Q Consensus       109 ~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s--~d~~I~vwdl~~~~~~~~l  186 (441)
                      +..++......++...+..|.+.|..+.+.+...........+.+.++..  .+.++-.  .++.+.+.|-.+++.+...
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            45555444467777778999999988888877776655556667777543  2333333  3789999999999887775


Q ss_pred             cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      .--..+ ..+++.|++..++++-..++.|.+.|.......+ - ....                                
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~~~--------------------------------  201 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SVGS--------------------------------  201 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-cccc--------------------------------
Confidence            433333 8999999999777777788999999965432110 0 0000                                


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---CcEEEeeCCCCCceeeee
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~~wd~~~~~~~~~~~  343 (441)
                                                       ...-......+.++|+|.++...-..   +++...|..++.......
T Consensus       202 ---------------------------------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~  248 (381)
T COG3391         202 ---------------------------------LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL  248 (381)
T ss_pred             ---------------------------------ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence                                             00000123457899999865443332   588888888765321101


Q ss_pred             eeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeeccccc---ceEEEEEcCCC
Q 013545          344 ETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYE---YVNCCCFSSQD  403 (441)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~---~v~~v~fspd~  403 (441)
                      .  .... .+......|++..+++...  ..+.+.|-.+......+.....   .+..+++.+..
T Consensus       249 ~--~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         249 P--VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             c--cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            0  0011 3556788899988877633  5677777766665554433332   35566666543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.27  E-value=1  Score=42.39  Aligned_cols=93  Identities=12%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             cEEEEECCCCeEEEEEecC--CeeEEEeeccCCC----CccEEEEEeC---------C-CcEEEEECCCC----ceeeee
Q 013545          127 YVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAA----SHMLIAAGTE---------D-VQVRLCDIASG----AISQTL  186 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~las~s~---------d-~~I~vwdl~~~----~~~~~l  186 (441)
                      .|++.|..+.+.+..+.++  ..+.++.......    ...++++|+.         . |.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5788888887777666653  3344444333222    2456776643         2 78999999884    122222


Q ss_pred             --cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545          187 --SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (441)
Q Consensus       187 --~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~  223 (441)
                        ....++|.++.-. ++ +++++  ..+.|.+|++...
T Consensus        83 ~~~~~~g~V~ai~~~-~~-~lv~~--~g~~l~v~~l~~~  117 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NG-RLVVA--VGNKLYVYDLDNS  117 (321)
T ss_dssp             EEEEESS-EEEEEEE-TT-EEEEE--ETTEEEEEEEETT
T ss_pred             EEEeecCcceEhhhh-CC-EEEEe--ecCEEEEEEccCc
Confidence              2457889998876 33 34433  3589999998754

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.26  E-value=1  Score=42.07  Aligned_cols=103  Identities=19%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             cCeEEEEEccCCCEEE-EeecCCcEEEeeCCC--CCcee-eeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc
Q 013545          305 GAVTGLKVTEDGMYLL-SAGSDSRIRLWDVES--GRNTL-VNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI  378 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~  378 (441)
                      .--++|+||||++.|. +=+..++|.-|++..  +.... ..+.......+.+--++...++.+.+.+..  ..+..|+.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            3457899999997654 446668898888763  21100 011111223355556677778887755444  37899998


Q ss_pred             cCCceEeeecccccceEEEEEcC-CCCeEEE
Q 013545          379 WSGKTCLTFRGHYEYVNCCCFSS-QDQELYT  408 (441)
Q Consensus       379 ~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s  408 (441)
                      . |+++.++.-....+++++|-- +.+.|+.
T Consensus       243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             C-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence            8 898888887777889999874 4455543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.17  E-value=0.86  Score=40.44  Aligned_cols=110  Identities=14%  Similarity=0.136  Sum_probs=79.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      ..+++.||..+.+.--|..+|++...-.+...+...++..   + ..++.|...+.+.+.+.++|.....+.....--..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv---g-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV---G-DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE---C-CEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            4578899999999999999999876655665554444432   1 24778889999999999999776655432221123


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~  230 (441)
                      ....+++. ++..|+.|+....-|.++.+|+...+
T Consensus        99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             eEEcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence            34456665 67899999999999999988876543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.17  E-value=0.55  Score=45.97  Aligned_cols=50  Identities=12%  Similarity=0.181  Sum_probs=36.9

Q ss_pred             CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545          170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       170 ~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~  220 (441)
                      ..+.++|+++++....+. ..+.-..-+|+|+|+.++++...||...||=+
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            469999999987544433 22333467899999999999999998777744

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.12  E-value=0.28  Score=48.16  Aligned_cols=101  Identities=11%  Similarity=0.056  Sum_probs=53.4

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEe-eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceE
Q 013545          306 AVTGLKVTEDGMYLLSAGSDSRIRLW-DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTC  384 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs~D~~i~~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~  384 (441)
                      .-...+|++.++ +|+-...++|.++ ++.....       .....+....-.+.  |.++...+...+.+||..+++.+
T Consensus        70 ~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~-------k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i  139 (443)
T PF04053_consen   70 SGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV-------KSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLI  139 (443)
T ss_dssp             E-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT------------SS-EEEEE---SSSEEEEETTEEEEE-TTT--EE
T ss_pred             ceeEEEEecCcc-EEEEECCCeEEEEEcCccccc-------eEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHccee
Confidence            345678888555 5556668889996 4432110       00111111111122  66666666667999999999998


Q ss_pred             eeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          385 LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       385 ~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      ..+.-.  +|..|.||++|.+++-.+.| ++.|.+
T Consensus       140 ~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  140 RRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             EEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             eEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            888744  38999999999998877655 555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.10  E-value=1.4  Score=42.05  Aligned_cols=153  Identities=12%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             EccCCCCcEEEEeeCCCcEEEE--ECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCc
Q 013545           50 QVDLTEERYLLSGASDSSVAVY--DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY  127 (441)
Q Consensus        50 ~~s~~~~~~l~s~s~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~  127 (441)
                      +|.+++.++|.++..||.-.+|  |+.+++..+            +.+.    .+.... ....++ +...++-.....+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q------------LTdg----~g~~~~-g~~~s~-~~~~~~Yv~~~~~  103 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ------------LTDG----PGDNTF-GGFLSP-DDRALYYVKNGRS  103 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------S----S-B-TT-T-EE-T-TSSEEEEEETTTE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE------------CccC----CCCCcc-ceEEec-CCCeEEEEECCCe
Confidence            4554334566666668876666  666553211            0110    011111 123334 3455554555678


Q ss_pred             EEEEECCCCeEEEEEecCCeeE-EEeeccCCCCccEEEEE----------------------eCCCcEEEEECCCCceee
Q 013545          128 VKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAG----------------------TEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~las~----------------------s~d~~I~vwdl~~~~~~~  184 (441)
                      |+--|+.+.+....+..+.... ...+...+... .++..                      -....|..-|+++|+...
T Consensus       104 l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~  182 (386)
T PF14583_consen  104 LRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV  182 (386)
T ss_dssp             EEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred             EEEEECCcCcEEEEEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence            8888988877655555443221 22332222211 11111                      111235666888887544


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeec---CC-cEEEEEcCC
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGC---DG-AIRFWDIRR  222 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~---Dg-~I~iWD~~~  222 (441)
                      .+. -...+.-+.|+|..+.+++=|.+   |. .-|||=+++
T Consensus       183 v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  183 VFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             EEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             EEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence            443 34556678899988766554442   33 358887654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.02  E-value=0.67  Score=45.31  Aligned_cols=48  Identities=21%  Similarity=0.492  Sum_probs=35.9

Q ss_pred             cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      .|++|+.. |+++..+.--.+.+.++.|..+.+  |+.-..||.+++||+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCC
Confidence            48899874 555655543338999999998654  4556789999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.94  E-value=0.35  Score=47.33  Aligned_cols=119  Identities=9%  Similarity=-0.024  Sum_probs=65.9

Q ss_pred             EEEccCCCEEE-EeecCCcEEE--eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--C--ceEEEEccCCc
Q 013545          310 LKVTEDGMYLL-SAGSDSRIRL--WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--T--AVKAFDIWSGK  382 (441)
Q Consensus       310 l~~s~dg~~l~-sgs~D~~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~wd~~~~~  382 (441)
                      -+|+|||+.|+ +...|+...|  .|+.+...  ..   +.-.......-.++|||..++..+.  +  .+-+.+...+.
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~---Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PR---LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--ee---cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            36999998765 5667776555  46665431  11   1111222234567899998877654  2  34445554443


Q ss_pred             eEeeecccccceEEEEEcCCCCeEEEeec-CCc--EEEeCCCCCCCCCccCCccC
Q 013545          383 TCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQ--ILVWCPSRHISDGVDAGPMQ  434 (441)
Q Consensus       383 ~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~--i~vW~~~~~~~~~~~~~~~~  434 (441)
                      . ..+.-..+.=.+-.+||||++|+-.+. ++.  |.+-++.++--.++..++..
T Consensus       318 ~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~  371 (425)
T COG0823         318 V-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL  371 (425)
T ss_pred             e-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc
Confidence            3 322222222237789999999986654 333  66666655543334444433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.81  E-value=0.25  Score=48.50  Aligned_cols=142  Identities=15%  Similarity=0.185  Sum_probs=74.5

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      .-....|.++| ++++++. +.||.-.|+.......            .          ..+.-...+|.+  .+.+|.-
T Consensus        32 ~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~------------k----------~~G~g~~~vw~~--~n~yAv~   85 (443)
T PF04053_consen   32 EIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRN------------K----------AFGSGLSFVWSS--RNRYAVL   85 (443)
T ss_dssp             SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEE------------E----------EEEE-SEEEE-T--SSEEEEE
T ss_pred             CcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCcc------------c----------ccCceeEEEEec--CccEEEE
Confidence            34567899997 5776655 7889988887432211            0          111223456765  4468888


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      ....+|+|+.--.......++.+..+..+-.      +.+|+..+. +.|.+||.++++.++.+.-.  +|..|.|++++
T Consensus        86 ~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~------G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g  156 (443)
T PF04053_consen   86 ESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG------GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDG  156 (443)
T ss_dssp             -TTS-EEEEETTEE-TT-----SS-EEEEE-------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTS
T ss_pred             ECCCeEEEEEcCccccceEEcCCcccceEEc------CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCC
Confidence            7789999974322222223343332222211      235555543 47999999999999888643  38999999998


Q ss_pred             CcEEEEeecCCcEEEEEcC
Q 013545          203 EWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~  221 (441)
                      +.+. -.+ +.++.|++..
T Consensus       157 ~~va-l~t-~~~i~il~~~  173 (443)
T PF04053_consen  157 ELVA-LVT-KDSIYILKYN  173 (443)
T ss_dssp             SEEE-EE--S-SEEEEEE-
T ss_pred             CEEE-EEe-CCeEEEEEec
Confidence            8543 333 5578887743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.81  E-value=1.1  Score=42.81  Aligned_cols=91  Identities=22%  Similarity=0.220  Sum_probs=53.6

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecC-------C--------
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSG-------H--------  189 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~-------h--------  189 (441)
                      +.+-++|+++++...............++|++.   .+|-.. ++.|.+.++.++...+ +..|       -        
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCC---eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            468899999877544332234566777888743   444443 6789999998875443 2222       0        


Q ss_pred             -CCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545          190 -RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       190 -~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~  220 (441)
                       -+.-.++-|||++++++..--.+..|+.+.+
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             ccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence             1123568899999986555555666766654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.58  E-value=2.5  Score=41.06  Aligned_cols=173  Identities=14%  Similarity=0.148  Sum_probs=87.8

Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR  264 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (441)
                      .+....++|++++.|.-|  +++.|..+|.+.|-|+|....+..-.....            .                 
T Consensus        81 l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~------------~-----------------  129 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES------------F-----------------  129 (395)
T ss_dssp             EE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------------------
T ss_pred             heeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc------------c-----------------
Confidence            345568999999999776  678899999999999986543322100000            0                 


Q ss_pred             cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc-----cCC---CEEEEeecCCcEEEeeCCC-
Q 013545          265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-----EDG---MYLLSAGSDSRIRLWDVES-  335 (441)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg---~~l~sgs~D~~i~~wd~~~-  335 (441)
                                                        ........|+++.|+     .|+   -.+..|+..|.+.+|.+-. 
T Consensus       130 ----------------------------------~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~  175 (395)
T PF08596_consen  130 ----------------------------------LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS  175 (395)
T ss_dssp             ----------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred             ----------------------------------cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence                                              000112234555554     233   3577888889888887652 


Q ss_pred             CCcee-eeeeeEE-eccCcceEEE-ee---------------------CCCcEEEEeCCCceEEEEccCCceEeeecccc
Q 013545          336 GRNTL-VNFETVR-LQTSKPIQLA-TT---------------------QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY  391 (441)
Q Consensus       336 ~~~~~-~~~~~~~-~~~~~~~~~~-~~---------------------~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~  391 (441)
                      ..... ..+.... ...+....+. +.                     ....++++.+...+|++...+.+..+......
T Consensus       176 ~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~  255 (395)
T PF08596_consen  176 SNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDP  255 (395)
T ss_dssp             GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-
T ss_pred             CCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccc
Confidence            11111 1122211 1112211111 11                     11235556667889999998887665444332


Q ss_pred             cceEEEEEc-----CCCCeEEEeecCCcEEEeCCCC
Q 013545          392 EYVNCCCFS-----SQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       392 ~~v~~v~fs-----pd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      -....+.+-     ..+..|+.--.||.|+++.++.
T Consensus       256 ~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  256 FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             cccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence            233444552     3466688888999999998875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.50  E-value=0.035  Score=56.51  Aligned_cols=70  Identities=16%  Similarity=0.094  Sum_probs=57.9

Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEee
Q 013545          307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT  386 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~  386 (441)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+     ++++                                        
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----~htv----------------------------------------   96 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----THTV----------------------------------------   96 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCce-----eeee----------------------------------------
Confidence            6779999999999999999999999876533     1221                                        


Q ss_pred             ecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          387 FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       387 l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ...|+.+|..+.|||+|..|+|+..=|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            13488999999999999999999999999999765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=3  Score=40.37  Aligned_cols=191  Identities=13%  Similarity=0.158  Sum_probs=123.0

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEee--cCCcEEEEEcCCCceeeEeccCCcccc
Q 013545          161 MLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLG  237 (441)
Q Consensus       161 ~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s--~Dg~I~iWD~~~~~~~~~~~~~~~~~~  237 (441)
                      ...+....++.|.+.|+++........ |.  ....++++|+++.+.++-.  .++++.+-|..+++.....        
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~--------  156 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI--------  156 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--------
Confidence            355555557889999988877665543 33  4578999999987776655  3677777776554322211        


Q ss_pred             CCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC
Q 013545          238 RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM  317 (441)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  317 (441)
                                                                                    ..+. .+ ..++++|+|.
T Consensus       157 --------------------------------------------------------------~vG~-~P-~~~a~~p~g~  172 (381)
T COG3391         157 --------------------------------------------------------------PVGN-TP-TGVAVDPDGN  172 (381)
T ss_pred             --------------------------------------------------------------ecCC-Cc-ceEEECCCCC
Confidence                                                                          0000 12 6789999999


Q ss_pred             EE-EEeecCCcEEEeeCCCCCceeeeeee-EEeccCcceEEEeeCCCcEEEEeCCC----ceEEEEccCCceEee-eccc
Q 013545          318 YL-LSAGSDSRIRLWDVESGRNTLVNFET-VRLQTSKPIQLATTQDPAVVFVPCMT----AVKAFDIWSGKTCLT-FRGH  390 (441)
Q Consensus       318 ~l-~sgs~D~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~wd~~~~~~~~~-l~gh  390 (441)
                      .+ ++-..+++|.+.|..+..... .... .......+..+.+.+++..+++....    .+-..|..++..... +..-
T Consensus       173 ~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~  251 (381)
T COG3391         173 KVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG  251 (381)
T ss_pred             eEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc
Confidence            55 445688999999977643211 1100 11223456778899999988877553    566777777766554 2211


Q ss_pred             ccceEEEEEcCCCCeEEEeec-CCcEEEeCCCCCCCC
Q 013545          391 YEYVNCCCFSSQDQELYTGGN-DRQILVWCPSRHISD  426 (441)
Q Consensus       391 ~~~v~~v~fspd~~~l~s~s~-D~~i~vW~~~~~~~~  426 (441)
                      ......++++|+|+.+..... .+.+.+-+..+..+.
T Consensus       252 ~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         252 SGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             cCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence            114567899999999887744 477888887776654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.098  Score=51.70  Aligned_cols=77  Identities=22%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE-EEEEecCCCcEEEEeecCCcEEEEEcCCCc
Q 013545          146 GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAG  224 (441)
Q Consensus       146 ~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~  224 (441)
                      ..+..+.+.|.   ..++|.+..+|.|-+..++ ...+.+++-|..+++ +++|.|||+ +||.|=.||+|++-|+.++.
T Consensus        21 ~~i~~~ewnP~---~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPK---MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCc---cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence            34555666664   3489999999999999988 667788887777777 999999998 68889999999999999876


Q ss_pred             eee
Q 013545          225 CFR  227 (441)
Q Consensus       225 ~~~  227 (441)
                      .+.
T Consensus        96 ~l~   98 (665)
T KOG4640|consen   96 RLV   98 (665)
T ss_pred             cee
Confidence            544

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.21  E-value=0.089  Score=52.64  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             EEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC-ceEEEEccCCce---Ee
Q 013545          310 LKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKT---CL  385 (441)
Q Consensus       310 l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~---~~  385 (441)
                      -+++..+++++-|+.-|.+++|+-..+.......+   ...........+++..+++.++.. .|-++.+.++..   ..
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhccccc---CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            35677889999999999999999776653221111   122333445566666666666654 445554433211   11


Q ss_pred             ---eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          386 ---TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       386 ---~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                         .-..|...|+|++||+|+..+++|..-|+|-.-.+++
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence               1123778899999999999999999999988877766

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.10  E-value=0.007  Score=59.50  Aligned_cols=155  Identities=18%  Similarity=0.293  Sum_probs=95.4

Q ss_pred             CceeEEEccCCCC-cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           44 GSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        44 ~~V~~l~~s~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      -.+.|++...... ..++.|..+|.|-+=.+.....           +-    .....+|....++++|.+.|.+.||.|
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-----------Ss----~E~tp~~ar~Ct~lAwneLDtn~LAag  121 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-----------SS----AEVTPGYARPCTSLAWNELDTNHLAAG  121 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccc-----------cc----ceecccccccccccccccccHHHHHhh
Confidence            4566776553333 5789999999998877653221           10    111235666788899999888888877


Q ss_pred             eC----CCcEEEEECCCC--eEEEEEecCC----eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCC
Q 013545          123 SY----DHYVKVWDTNCT--RVVMNFKMPG----KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRD  191 (441)
Q Consensus       123 s~----D~~i~iWd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~  191 (441)
                      =+    |..++|||+.++  .+.....+.+    ...  .+++. ....++.+|.....++++|+.... ....+  .+.
T Consensus       122 ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqn--s~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk  196 (783)
T KOG1008|consen  122 LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQN--SVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTK  196 (783)
T ss_pred             hhhhcccCCccceecccccCCCccccccccccccCcc--ccccc-cCcchhhcccccchhhhhhhhhhhhhhhhh--hhh
Confidence            33    677999999876  2222222221    122  22333 345678888888899999987332 11222  233


Q ss_pred             CeEEEEEec-CCCcEEEEeecCCcEEEEEc
Q 013545          192 GIMTVEWST-SSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       192 ~v~~v~fsp-~~~~~l~s~s~Dg~I~iWD~  220 (441)
                      .|..+...| ... .+++ ..||.|-+||.
T Consensus       197 ~vqG~tVdp~~~n-Y~cs-~~dg~iAiwD~  224 (783)
T KOG1008|consen  197 YVQGITVDPFSPN-YFCS-NSDGDIAIWDT  224 (783)
T ss_pred             hcccceecCCCCC-ceec-cccCceeeccc
Confidence            456677777 344 4555 45999999993

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.08  E-value=0.57  Score=45.67  Aligned_cols=148  Identities=23%  Similarity=0.292  Sum_probs=89.6

Q ss_pred             CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc-------EEEEeecCCcEEEEEcCCCceeeEec
Q 013545          158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW-------ILVTGGCDGAIRFWDIRRAGCFRVLD  230 (441)
Q Consensus       158 ~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~-------~l~s~s~Dg~I~iWD~~~~~~~~~~~  230 (441)
                      .++.+|.++.....++-.|++.|+.+...+-|.. |.-+.+.|+.+.       .| .|=.|+.|.-||+|-...- .+.
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~-kl~  420 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKN-KLA  420 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcc-eee
Confidence            3456677777777899999999999888776666 677777776542       22 3556889999998832110 000


Q ss_pred             cCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEE
Q 013545          231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL  310 (441)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  310 (441)
                      ..+.                                                    +.+            .-.....|.
T Consensus       421 ~~q~----------------------------------------------------kqy------------~~k~nFsc~  436 (644)
T KOG2395|consen  421 VVQS----------------------------------------------------KQY------------STKNNFSCF  436 (644)
T ss_pred             eeec----------------------------------------------------ccc------------cccccccee
Confidence            0000                                                    000            001123444


Q ss_pred             EEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEE
Q 013545          311 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD  377 (441)
Q Consensus       311 ~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd  377 (441)
                      +-..+| +||.||.+|-||+||- .++.....+   +.-...+..+.++.+|..++..|...+-+.+
T Consensus       437 aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl---PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~  498 (644)
T KOG2395|consen  437 ATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL---PGLGDAIKHVDVTADGKWILATCKTYLLLID  498 (644)
T ss_pred             eecCCc-eEEEeecCCcEEeehh-hhhhhhhcc---cccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence            444455 8889999999999996 333211111   1112334557778889888888877665555

>PHA02713 hypothetical protein; Provisional

Probab=94.84  E-value=3  Score=42.71  Aligned_cols=52  Identities=2%  Similarity=-0.132  Sum_probs=32.4

Q ss_pred             ceEEEEccC---CceEeeecccccceEEEEEcCCCCeEEEeecCC--cEEEeCCCCCCC
Q 013545          372 AVKAFDIWS---GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR--QILVWCPSRHIS  425 (441)
Q Consensus       372 ~~~~wd~~~---~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~--~i~vW~~~~~~~  425 (441)
                      .+..||..+   +..+..+.........+++  +|+..+.||.|+  ++..+|+.+++=
T Consensus       481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        481 CIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             eEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence            356788765   3444444433333333333  688889999988  777888877653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.26  E-value=7.2  Score=39.97  Aligned_cols=94  Identities=20%  Similarity=0.287  Sum_probs=50.8

Q ss_pred             CCEEEEEeCC------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC------CcEEEEECCCCcee
Q 013545          116 TGLFVTGSYD------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED------VQVRLCDIASGAIS  183 (441)
Q Consensus       116 ~~~l~sgs~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d------~~I~vwdl~~~~~~  183 (441)
                      +.+++.||.+      .++..+|..++.......++.+-........  .+.+.++|+.|      ..+..||..+.+-.
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            4466777776      4688889887765544444322111111111  23577788877      35788888777532


Q ss_pred             e--eecCCCCCeEEEEEecCCCcEEEEeecCCc
Q 013545          184 Q--TLSGHRDGIMTVEWSTSSEWILVTGGCDGA  214 (441)
Q Consensus       184 ~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~  214 (441)
                      .  .+.......-...+  +| .+.|.||.||.
T Consensus       363 ~~a~M~~~R~~~~v~~l--~g-~iYavGG~dg~  392 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVL--DG-KLYAVGGFDGE  392 (571)
T ss_pred             ccCCccCccccceeEEE--CC-EEEEEeccccc
Confidence            2  22222222222222  33 37788998863

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.23  E-value=0.16  Score=44.05  Aligned_cols=104  Identities=14%  Similarity=0.133  Sum_probs=66.2

Q ss_pred             CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc-eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccc-c
Q 013545          316 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP-IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY-E  392 (441)
Q Consensus       316 g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~-~  392 (441)
                      +..++.|+.||+|.+|+..-.-...-.+..   ..... ..++...++.+..+++. +.+|.|++.-++.+.....|. .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhc---ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence            567888999999999987621100000000   00111 11122223334444443 689999998888887777787 6


Q ss_pred             ceEEEEEcCCCCeEEEe--ecCCcEEEeCCCC
Q 013545          393 YVNCCCFSSQDQELYTG--GNDRQILVWCPSR  422 (441)
Q Consensus       393 ~v~~v~fspd~~~l~s~--s~D~~i~vW~~~~  422 (441)
                      ++.....+..++.|+.+  |.|..++.|++..
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            77777777778888888  8899999998863

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.19  E-value=2.1  Score=43.39  Aligned_cols=104  Identities=14%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             EccCCCEEEEeecCCcEEEeeCCC----CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCce--
Q 013545          312 VTEDGMYLLSAGSDSRIRLWDVES----GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKT--  383 (441)
Q Consensus       312 ~s~dg~~l~sgs~D~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~--  383 (441)
                      +.++|++...  .+++|.+.|..+    +....    ........|--+.++||+.++++.+.  ..+.++|+.+.+.  
T Consensus       284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~----~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALT----RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hhhCCCEEEE--CCCEEEEEECCccccCCcceE----EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence            4456766554  367899999887    22211    11122455667889999999998865  5899999877542  


Q ss_pred             ----------EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          384 ----------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       384 ----------~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                                ..+..--.+ -...+|.++|..+.|---|..|-.|++..
T Consensus       358 ~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence                      223322222 35678999998888889999999999886

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.11  E-value=0.14  Score=32.66  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             cceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          392 EYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       392 ~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ..|.+++|+|...+||.|..||.|.++..+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            469999999999999999999999999884

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.10  E-value=0.2  Score=49.67  Aligned_cols=46  Identities=17%  Similarity=0.047  Sum_probs=37.4

Q ss_pred             CceEeeecccccceE-EEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          381 GKTCLTFRGHYEYVN-CCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       381 ~~~~~~l~gh~~~v~-~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      .+.+-++.-|...+. +++|.|||+.||.|=.||+|++-|++++...
T Consensus        51 ~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   51 WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            344445565666777 9999999999999999999999999987643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.03  E-value=0.2  Score=32.00  Aligned_cols=30  Identities=7%  Similarity=0.106  Sum_probs=27.5

Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                      ..|..++|+|....||.|+.||.|.++.+.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            458899999999999999999999999883

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.60  E-value=9.3  Score=38.79  Aligned_cols=70  Identities=20%  Similarity=0.224  Sum_probs=43.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEe------CCCcEEEEECCCCceeeee
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGT------EDVQVRLCDIASGAISQTL  186 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s------~d~~I~vwdl~~~~~~~~l  186 (441)
                      ++.++.++.|+.|.-.|.++|+.+-........  ..+..+|.-.+.. +..+.      .++.|..+|+++|+.+..+
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEec
Confidence            346777888999999999999988766542211  1111122111222 33332      2688999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.47  E-value=6.8  Score=36.76  Aligned_cols=60  Identities=17%  Similarity=0.225  Sum_probs=43.7

Q ss_pred             cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEe-ecCCcEEEEEcCCCceeeEecc
Q 013545          171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQ  231 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~-s~Dg~I~iWD~~~~~~~~~~~~  231 (441)
                      .|.++|+++++.+..+.- ..++.+|..+.+.+-+|.+. ..++.+.+||..+++..+..+.
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            588999999999988863 23477899998877556544 4589999999999988877653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.24  E-value=0.37  Score=50.80  Aligned_cols=69  Identities=23%  Similarity=0.414  Sum_probs=50.7

Q ss_pred             EEEEEeCCCcEEEEECCCCce-eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEecc
Q 013545          162 LIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ  231 (441)
Q Consensus       162 ~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~  231 (441)
                      .++.|++.|.+-..|....-. ...=..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeee
Confidence            577788888888888755311 111112357899999999987 567888999999999998877766644

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.83  E-value=5.7  Score=37.10  Aligned_cols=69  Identities=14%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             ceEEEeeCCCcEEEEeCC-----C-----ceEEEEcc-CCceEeeecccccceEEEEEcCCCCeEEEeec-CCcEEEeCC
Q 013545          353 PIQLATTQDPAVVFVPCM-----T-----AVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQILVWCP  420 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-----~-----~~~~wd~~-~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~i~vW~~  420 (441)
                      +....+.++|.+.+....     .     .-.+|.+. .+.....+..|-..-+.|+||||++.|+.+.. -+.|..++.
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~  192 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL  192 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence            344556667766665433     1     22566665 67777777777777899999999988876644 356666655


Q ss_pred             C
Q 013545          421 S  421 (441)
Q Consensus       421 ~  421 (441)
                      .
T Consensus       193 d  193 (307)
T COG3386         193 D  193 (307)
T ss_pred             C
Confidence            4

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.77  E-value=7.1  Score=36.74  Aligned_cols=137  Identities=12%  Similarity=0.205  Sum_probs=77.6

Q ss_pred             CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-EEEEEec
Q 013545           66 SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-VVMNFKM  144 (441)
Q Consensus        66 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-~~~~~~~  144 (441)
                      |.|.++++.+...        ....+-.+   +.....++|.++..+  ++ +|+.+. .++|.+|++...+ ......+
T Consensus        62 Gri~v~~i~~~~~--------~~~~l~~i---~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~  126 (321)
T PF03178_consen   62 GRILVFEISESPE--------NNFKLKLI---HSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY  126 (321)
T ss_dssp             EEEEEEEECSS-------------EEEEE---EEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE
T ss_pred             cEEEEEEEEcccc--------cceEEEEE---EEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhhee
Confidence            8899999876300        00011111   112346778888877  34 444443 4799999998777 5544444


Q ss_pred             CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceeeee-c-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          145 PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTL-S-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l-~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      ......+.+....   .+++.|.....+.++..+. +..+..+ + ...-.++++.|.++++ .++.+..+|.+.++...
T Consensus       127 ~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  127 DSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred             cceEEEEEEeccc---cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence            3333333333322   3677887777788775433 2212222 2 2355688999987765 56788999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=92.17  E-value=6.1  Score=40.47  Aligned_cols=24  Identities=13%  Similarity=0.039  Sum_probs=18.7

Q ss_pred             CCCEEEEeecCC--cEEEeeCCCCCc
Q 013545          315 DGMYLLSAGSDS--RIRLWDVESGRN  338 (441)
Q Consensus       315 dg~~l~sgs~D~--~i~~wd~~~~~~  338 (441)
                      +|+..+.||.|+  ++..||+.+.+-
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccc
Confidence            677888898888  788888887653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.10  E-value=8.5  Score=34.42  Aligned_cols=71  Identities=17%  Similarity=0.073  Sum_probs=53.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~  188 (441)
                      +++++-|...+.+-+-++++|.....+...+.+-.-+..  ..+..++..|+.|+.....|.++..++...+-
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~--d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC--DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE--cCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            668999999999999999999888777665544222211  12345888999999999999999888766553

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=91.82  E-value=9.5  Score=34.38  Aligned_cols=37  Identities=14%  Similarity=0.224  Sum_probs=25.8

Q ss_pred             eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~  220 (441)
                      +.+.+-...++.++|.|+.+.+++.....+.|.-.+.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~   51 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL   51 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC
Confidence            4566667779999999997777777777777776665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.15  E-value=2.7  Score=40.62  Aligned_cols=99  Identities=12%  Similarity=0.162  Sum_probs=52.9

Q ss_pred             CCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEEC-CCCcee----eeecC--------
Q 013545          125 DHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASGAIS----QTLSG--------  188 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl-~~~~~~----~~l~~--------  188 (441)
                      -+++.+||.++.+.++++.+..   ....+.+.++.....-++.+-..++|..|-- +.++-.    -.+..        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            3789999999999999998853   2334445444333333333333445555543 444311    11111        


Q ss_pred             ---------CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545          189 ---------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (441)
Q Consensus       189 ---------h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~  223 (441)
                               -..-|+.|..|.|++++.+++=.+|.||.||+...
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                     13457899999999988888888999999999754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.15  E-value=0.9  Score=48.11  Aligned_cols=98  Identities=22%  Similarity=0.306  Sum_probs=65.9

Q ss_pred             EEEEEeCCCcEEEEECCCCeE--EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRV--VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      .++.|+.-|.+-..|....-.  .......+++.+++++.++   .+++.|-.+|.|.+||..+++.++.+..|..++++
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg---~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG---SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC---ceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            566777777777766643211  2222345678888888754   47888999999999999999999988877766665


Q ss_pred             EEEe---cCCCcEEEEeecCCcEEEEEcC
Q 013545          196 VEWS---TSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       196 v~fs---p~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      +-++   .++. .+.++..-|.  +|.+-
T Consensus       178 vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  178 VIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            4433   2333 4566655554  77653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.04  E-value=0.98  Score=28.06  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=27.7

Q ss_pred             cceeEEEEeeCCC--CEEEEEeCCCcEEEEECCCC
Q 013545          104 YAISSAIWYPVDT--GLFVTGSYDHYVKVWDTNCT  136 (441)
Q Consensus       104 ~~V~~~~~~~~~~--~~l~sgs~D~~i~iWd~~~~  136 (441)
                      ++|.++.|+|..+  ++|+-+-.-+.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3678899998666  89999988999999999853

It contains a characteristic DLL sequence motif.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=90.86  E-value=19  Score=36.16  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCee-EE---EeeccCCC-CccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV-YR---TAMSPLAA-SHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                      ++.++.++.|+.|.-.|.++++.+-.+...... ..   +...+... +...+..++.++.|.-+|.++|+.+..+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            346777778899999999999987766543220 00   00000000 11356667789999999999999887664322


Q ss_pred             CC-----e-EEEEEecCCCcEEEEee---------cCCcEEEEEcCCCce
Q 013545          191 DG-----I-MTVEWSTSSEWILVTGG---------CDGAIRFWDIRRAGC  225 (441)
Q Consensus       191 ~~-----v-~~v~fsp~~~~~l~s~s---------~Dg~I~iWD~~~~~~  225 (441)
                      ..     + .+..+.. + . ++.++         .++.+.-.|..+++.
T Consensus       141 ~~~~~~~i~ssP~v~~-~-~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         141 QVPPGYTMTGAPTIVK-K-L-VIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CcCcceEecCCCEEEC-C-E-EEEeccccccccCCCCcEEEEEECCCCce
Confidence            10     1 1222222 2 2 33333         357788888887754

The alignment model contains an 8-bladed beta-propeller.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.31  E-value=1.2  Score=26.94  Aligned_cols=29  Identities=10%  Similarity=0.162  Sum_probs=19.8

Q ss_pred             cccceEEEEEcCCCCeEE-EeecC--CcEEEe
Q 013545          390 HYEYVNCCCFSSQDQELY-TGGND--RQILVW  418 (441)
Q Consensus       390 h~~~v~~v~fspd~~~l~-s~s~D--~~i~vW  418 (441)
                      ..+.-...+|||||++|+ +...+  +.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344577889999999988 44455  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.88  E-value=1.2  Score=42.65  Aligned_cols=103  Identities=17%  Similarity=0.187  Sum_probs=61.0

Q ss_pred             ccCCCEEEEe---------ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCce
Q 013545          313 TEDGMYLLSA---------GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT  383 (441)
Q Consensus       313 s~dg~~l~sg---------s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~  383 (441)
                      |||+++++-.         +..+.+.++|+++++...  +..   .........++|++..++......+.+.+..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--l~~---~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--LTP---PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--SS----EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--CcC---CccccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence            5677766542         234568899999865321  111   13345567889999998888888888888766643


Q ss_pred             Ee-eecc-------c---------ccceEEEEEcCCCCeEEEeecC-CcEEEeCC
Q 013545          384 CL-TFRG-------H---------YEYVNCCCFSSQDQELYTGGND-RQILVWCP  420 (441)
Q Consensus       384 ~~-~l~g-------h---------~~~v~~v~fspd~~~l~s~s~D-~~i~vW~~  420 (441)
                      .. +..|       -         -+.-..+-|||||++||....| ..|+.+.+
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence            32 2222       1         1123568899999999976554 44555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.87  E-value=0.97  Score=43.51  Aligned_cols=98  Identities=15%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             ecCCcEEEeeCCCCCceeeeeeeEEeccCc--c--eEEEeeCCCcEEEEeCCCceEEEEccC---C----ceEeeec---
Q 013545          323 GSDSRIRLWDVESGRNTLVNFETVRLQTSK--P--IQLATTQDPAVVFVPCMTAVKAFDIWS---G----KTCLTFR---  388 (441)
Q Consensus       323 s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~wd~~~---~----~~~~~l~---  388 (441)
                      -...++.+||+.+.+...    ++.+....  +  ++.+..|+...-|++|..+-.+|-...   +    +.+.++.   
T Consensus       219 ~yG~~l~vWD~~~r~~~Q----~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~  294 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQ----TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK  294 (461)
T ss_dssp             -S--EEEEEETTTTEEEE----EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred             cccCeEEEEECCCCcEee----EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence            345689999999876422    33332211  2  345555666777777665544443311   1    2222221   


Q ss_pred             --------------ccccceEEEEEcCCCCeEEE-eecCCcEEEeCCCCCC
Q 013545          389 --------------GHYEYVNCCCFSSQDQELYT-GGNDRQILVWCPSRHI  424 (441)
Q Consensus       389 --------------gh~~~v~~v~fspd~~~l~s-~s~D~~i~vW~~~~~~  424 (441)
                                    .-..-|+++.+|.|+++|.- +=.+|.||.+|++...
T Consensus       295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                          11345899999999999884 4458999999998644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=89.63  E-value=16  Score=33.30  Aligned_cols=63  Identities=16%  Similarity=0.148  Sum_probs=37.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~  182 (441)
                      .++.|+.|..+| +.+++...............+.++...+..  +.+++-  .|+.+.++++..-..
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~--~~llvL--sd~~l~~~~L~~l~~   68 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL--NLLLVL--SDGQLYVYDLDSLEP   68 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc--CEEEEE--cCCccEEEEchhhcc
Confidence            467888898888 888888332222222222236666665532  223333  359999999976543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.57  E-value=1.2  Score=27.70  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=24.4

Q ss_pred             CCeEEEEEecCCC--cEEEEeecCCcEEEEEcCC
Q 013545          191 DGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       191 ~~v~~v~fsp~~~--~~l~s~s~Dg~I~iWD~~~  222 (441)
                      +.|.++.|+|...  .+|+-+-.-|.|.++|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998643  3666655568999999985

It contains a characteristic DLL sequence motif.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.49  E-value=4.7  Score=35.45  Aligned_cols=106  Identities=17%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             eEEEEEccCCCE-EEEeecCCcEEEee--CCCCCce--eeeeeeEE---eccCcceEEEeeCCCcEEEE-eCCCceEEEE
Q 013545          307 VTGLKVTEDGMY-LLSAGSDSRIRLWD--VESGRNT--LVNFETVR---LQTSKPIQLATTQDPAVVFV-PCMTAVKAFD  377 (441)
Q Consensus       307 v~~l~~s~dg~~-l~sgs~D~~i~~wd--~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~wd  377 (441)
                      -+.|+|+.|.+. ...-+.+-+|.-||  ..++...  ...+....   ..+..|--+++..+|.+.++ -..+++.-+|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            356778877654 45567788887787  5555321  11111111   11111222333445544333 2446788889


Q ss_pred             ccCCceEeeecccccceEEEEEcCC--CCeEEEeecC
Q 013545          378 IWSGKTCLTFRGHYEYVNCCCFSSQ--DQELYTGGND  412 (441)
Q Consensus       378 ~~~~~~~~~l~gh~~~v~~v~fspd--~~~l~s~s~D  412 (441)
                      ..+|+.+.++.-....|+|++|---  .-+.+|+..+
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~  276 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK  276 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence            9999999999888999999999854  3455666554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.21  E-value=23  Score=34.59  Aligned_cols=31  Identities=13%  Similarity=0.183  Sum_probs=24.2

Q ss_pred             EEEEEecCCCcEEEEeecCCc----EEEEEcCCCc
Q 013545          194 MTVEWSTSSEWILVTGGCDGA----IRFWDIRRAG  224 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~----I~iWD~~~~~  224 (441)
                      ....++|++++++++-+..|.    ++++|+.+++
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~  161 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK  161 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc
Confidence            367789999987777666664    9999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.09  E-value=8.1  Score=37.21  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             CeEEEEEccCCCEEEEee-----------cCC-cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCce
Q 013545          306 AVTGLKVTEDGMYLLSAG-----------SDS-RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAV  373 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs-----------~D~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (441)
                      ....|+|.++|+.+++-.           ..+ +|.+++-..+................+.-+++.+++  +++++...+
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence            356899999999887753           223 777776543321111111111122344556667777  555555555


Q ss_pred             EEEEccCC------c--eE-eeecc----cccceEEEEEcCCCCeEEEee
Q 013545          374 KAFDIWSG------K--TC-LTFRG----HYEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       374 ~~wd~~~~------~--~~-~~l~g----h~~~v~~v~fspd~~~l~s~s  410 (441)
                      ..+.-..+      +  .+ ..+..    +......++|.|||++.++-+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            44422111      1  11 22322    234478999999998888655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13616 lipoprotein LpqB; Provisional

Probab=88.41  E-value=26  Score=36.12  Aligned_cols=69  Identities=14%  Similarity=0.071  Sum_probs=40.4

Q ss_pred             CcceEEEeeCCCcEEEEeCCCceEE---EEccCCce-E---eee-cccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          351 SKPIQLATTQDPAVVFVPCMTAVKA---FDIWSGKT-C---LTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~---wd~~~~~~-~---~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ..+..+.+++||..++....+.+.+   .....|.. +   ..+ .+-...+.++.|.+++..+ .+..+....+|.+
T Consensus       448 g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        448 GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            3466788999999877655555544   33334431 1   112 2223346889999999865 4444554556643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.40  E-value=7.4  Score=39.93  Aligned_cols=96  Identities=18%  Similarity=0.244  Sum_probs=64.0

Q ss_pred             EEeCCCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-----CC----ceeee--ec
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-----SG----AISQT--LS  187 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-----~~----~~~~~--l~  187 (441)
                      .-+.-.++.|||.+.+.......+  .+.+..+.|.....++.+||+|- .+.|.++.-.     ..    ..++.  +.
T Consensus        46 V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~  124 (631)
T PF12234_consen   46 VDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRYDYTNKGPSWAPIRKIDIS  124 (631)
T ss_pred             EECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccchhhhcCCcccceeEEEEee
Confidence            334456799999998886554444  77888999888777777787775 5667776431     11    22332  34


Q ss_pred             CCC-CCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545          188 GHR-DGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       188 ~h~-~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~  220 (441)
                      .|+ .+|....|.++|.  |+.|+ .+.+.++|-
T Consensus       125 ~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  125 SHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDK  155 (631)
T ss_pred             cCCCCCccceeEecCCe--EEEEe-CCEEEEECC
Confidence            555 6788999999985  34333 467888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.25  E-value=20  Score=33.34  Aligned_cols=104  Identities=13%  Similarity=0.179  Sum_probs=54.0

Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEE-ccCCce
Q 013545          305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD-IWSGKT  383 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd-~~~~~~  383 (441)
                      +.+..+..++||++|+.++...-..-||.-...  ...  ..+........+.+.+++.+.+++..+.++.=+ ....+.
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~--w~~--~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT--WQP--HNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET  220 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---EE--EE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCcc--ceE--EccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence            568888999999999988777777788765321  111  112223344567778888877776555555444 111111


Q ss_pred             E----eeecccccceEEEEEcCCCCeEEEeecC
Q 013545          384 C----LTFRGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       384 ~----~~l~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                      .    ..+..-.-.+.+++|.+++...++|+..
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            1    1111122238999999998888877654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.03  E-value=2.5  Score=25.43  Aligned_cols=30  Identities=17%  Similarity=0.391  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEecCCCcEEEEeecC--CcEEEE
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCD--GAIRFW  218 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~D--g~I~iW  218 (441)
                      ....-....|+|||++++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445567889999999888887777  777666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=87.95  E-value=21  Score=32.53  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=77.7

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 013545           55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (441)
Q Consensus        55 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~  134 (441)
                      .++.|+-|.++| +.++++......         ..+         -+...|..+...+. -+.|+.-+ |+++.++++.
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~---------~~i---------~~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~   64 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKP---------TRI---------LKLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLD   64 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccc---------eeE---------eecceEEEEEEecc-cCEEEEEc-CCccEEEEch
Confidence            356899998888 899998322211         000         12223666777663 34454443 4999999976


Q ss_pred             CCeEEE---------------EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-----ceeeeecCCCCCeE
Q 013545          135 CTRVVM---------------NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-----AISQTLSGHRDGIM  194 (441)
Q Consensus       135 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-----~~~~~l~~h~~~v~  194 (441)
                      .-....               .......+..++......+...|+.+.. ..|.+|.....     +..+.+. -.+.+.
T Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~  142 (275)
T PF00780_consen   65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEIS-LPDPPS  142 (275)
T ss_pred             hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEE-cCCCcE
Confidence            533322               1111122222221111223334554443 47888877653     2334443 347789


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCce
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGC  225 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~  225 (441)
                      ++.|.++  . ++.|. .+...+.|+.++..
T Consensus       143 ~i~~~~~--~-i~v~~-~~~f~~idl~~~~~  169 (275)
T PF00780_consen  143 SIAFLGN--K-ICVGT-SKGFYLIDLNTGSP  169 (275)
T ss_pred             EEEEeCC--E-EEEEe-CCceEEEecCCCCc
Confidence            9999843  3 34443 45688888876543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.77  E-value=21  Score=32.32  Aligned_cols=115  Identities=15%  Similarity=0.077  Sum_probs=62.1

Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEee-CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC----CCceEEEEcc--
Q 013545          307 VTGLKVTEDGMYLLSAGSDSRIRLWD-VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTAVKAFDIW--  379 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs~D~~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~wd~~--  379 (441)
                      ++.-.|++++...+....+...+++. ...+............ ...+..+.+++||..++...    ...+.+=-+.  
T Consensus        68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~-~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL-RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEeccccc-CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            44557888877766666666666663 2333221111111100 11455788999998877654    3344443332  


Q ss_pred             -CC------ceEeeecccccceEEEEEcCCCCeEEEeec-CCcEEE-eCCCC
Q 013545          380 -SG------KTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQILV-WCPSR  422 (441)
Q Consensus       380 -~~------~~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~i~v-W~~~~  422 (441)
                       .+      ............+..++|.+++.+++.+.. +..+.. ..+..
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence             22      111222233467999999999988775544 443433 43433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=87.02  E-value=17  Score=34.77  Aligned_cols=51  Identities=20%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             cEEEEECCCCceee---------eecCCCC-CeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          171 QVRLCDIASGAISQ---------TLSGHRD-GIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       171 ~I~vwdl~~~~~~~---------~l~~h~~-~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      .|.+++++.+....         .+.+|.. .=.-+.|+||++++|.++...|...||-+.
T Consensus       321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            46678888776431         1222221 124688999999999999999999888543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.88  E-value=24  Score=32.00  Aligned_cols=107  Identities=11%  Similarity=0.108  Sum_probs=66.9

Q ss_pred             CCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC
Q 013545          115 DTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (441)
Q Consensus       115 ~~~~l~sgs~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~  192 (441)
                      ++.++-|.|.-|  .|+.+|+.+++.+....++...+.=.+....  +.+.----.++...+||.++-+.+.+++ ..+.
T Consensus        55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~E  131 (264)
T PF05096_consen   55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGE  131 (264)
T ss_dssp             TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS
T ss_pred             CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEEEEEe-cCCc
Confidence            566777887765  6999999999998888777654433333322  2233344567889999999998887775 3345


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceee
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR  227 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~  227 (441)
                      =+.++  .+++.+++| .....+.++|..+.+..+
T Consensus       132 GWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~  163 (264)
T PF05096_consen  132 GWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVR  163 (264)
T ss_dssp             --EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEE
T ss_pred             ceEEE--cCCCEEEEE-CCccceEEECCcccceEE
Confidence            57777  355666555 335578888877654443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.87  E-value=28  Score=31.81  Aligned_cols=84  Identities=17%  Similarity=0.213  Sum_probs=46.3

Q ss_pred             CeEEEEEecCCeeEEEeeccCCCCccEEEEEeC-CCcEEEEECCCCceeeeecCCCCCeE--EEEEecCCCcEEEEee--
Q 013545          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLSGHRDGIM--TVEWSTSSEWILVTGG--  210 (441)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~-d~~I~vwdl~~~~~~~~l~~h~~~v~--~v~fsp~~~~~l~s~s--  210 (441)
                      ++++....++.....+.++|..+.  .++.+-- .-...++|.++.....++...++.-.  --.|||+|.++.+|-.  
T Consensus        58 Gk~v~~~~lpaR~Hgi~~~p~~~r--avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          58 GKIVFATALPARGHGIAFHPALPR--AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             CceeeeeecccccCCeecCCCCcc--eEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            333444444444555666665432  2333322 23567899988876655543222211  2358999997665532  


Q ss_pred             --cCCcEEEEEcC
Q 013545          211 --CDGAIRFWDIR  221 (441)
Q Consensus       211 --~Dg~I~iWD~~  221 (441)
                        .-|.|=+||.+
T Consensus       136 d~~rGViGvYd~r  148 (366)
T COG3490         136 DPNRGVIGVYDAR  148 (366)
T ss_pred             CCCCceEEEEecc
Confidence              23568888876

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=85.70  E-value=0.45  Score=49.31  Aligned_cols=118  Identities=14%  Similarity=0.190  Sum_probs=75.8

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC--CCeEEEE-----Ee-cCCeeEEEeeccCCCCccEEEEEeCCCc
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN--CTRVVMN-----FK-MPGKVYRTAMSPLAASHMLIAAGTEDVQ  171 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~--~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~las~s~d~~  171 (441)
                      +|..++|-.+.|-+.+...++  -.-+.+.+||+.  .|+....     .. ....+..+.+.|.......+..+-.++.
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            466777777777555544444  334788999864  2332111     11 2234556667776655567777778889


Q ss_pred             EEEEECCCCceeeeecCCCCCeEEE-----------EEecCCCcEEEEeecCCcEEEEEcC
Q 013545          172 VRLCDIASGAISQTLSGHRDGIMTV-----------EWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       172 I~vwdl~~~~~~~~l~~h~~~v~~v-----------~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      |++....+... ..+++|...+..+           ..+|||. +|+..+.||.+++|-+-
T Consensus       207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence            99888766543 4456677655443           3688887 67888899999998653

>PHA03098 kelch-like protein; Provisional

Probab=85.59  E-value=45  Score=33.95  Aligned_cols=65  Identities=11%  Similarity=0.215  Sum_probs=32.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC------CcEEEEECCCCc
Q 013545          115 DTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED------VQVRLCDIASGA  181 (441)
Q Consensus       115 ~~~~l~sgs~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d------~~I~vwdl~~~~  181 (441)
                      ++.+++.||.+     ..+..||+.+.+-...-+++.+....+....  ++.+.+.|+.+      ..+..||+.+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            46677788876     3477788776553322222211111111111  23345555521      358889988764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=85.35  E-value=19  Score=36.92  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=55.1

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-----cEEEEECCCCcee
Q 013545          115 DTGLFVTGSYDH------YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASGAIS  183 (441)
Q Consensus       115 ~~~~l~sgs~D~------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-----~I~vwdl~~~~~~  183 (441)
                      ++.+.+.||.|+      ++..+|..+.+-...-++...-.......  .+..+.+.|+.|+     +|..||.++.+-.
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence            677888888764      46778887766543333321111111111  1234667777665     3788998887643


Q ss_pred             ee--ecCCCCCeEEEEEecCCCcEEEEeecCC-----cEEEEEcCC
Q 013545          184 QT--LSGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRR  222 (441)
Q Consensus       184 ~~--l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-----~I~iWD~~~  222 (441)
                      ..  .......+..+..   +..+.+.|+.||     +|..||..+
T Consensus       505 ~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  505 MVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             EcccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCC
Confidence            22  2223333333332   234678888776     355555443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=82.92  E-value=22  Score=36.63  Aligned_cols=74  Identities=16%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             EEeeCCCcEEEEe-CCCceEEEEccCCceEe--eecccccceEEEEEc--CCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545          356 LATTQDPAVVFVP-CMTAVKAFDIWSGKTCL--TFRGHYEYVNCCCFS--SQDQELYTGGNDRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       356 ~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~--~l~gh~~~v~~v~fs--pd~~~l~s~s~D~~i~vW~~~~~~~~~~~~  430 (441)
                      +..+.-+...++. ....+.+||...+.+..  .| ...+.|.++.|+  |||+.+++.|-...|.++..-.  .+++..
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R--~dy~~~  111 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR--YDYTNK  111 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc--hhhhcC
Confidence            3333444444443 34689999998876433  33 446779998886  7899999999999999986533  444555


Q ss_pred             Cc
Q 013545          431 GP  432 (441)
Q Consensus       431 ~~  432 (441)
                      +|
T Consensus       112 ~p  113 (631)
T PF12234_consen  112 GP  113 (631)
T ss_pred             Cc
Confidence            54

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=82.79  E-value=17  Score=37.90  Aligned_cols=114  Identities=13%  Similarity=0.147  Sum_probs=70.4

Q ss_pred             eeEEEEeeC-CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEEecCCeeEEEeeccCCCCccEEE
Q 013545          106 ISSAIWYPV-DTGLFVTGSYDHYVKVWDTNC-------T-------------RVVMNFKMPGKVYRTAMSPLAASHMLIA  164 (441)
Q Consensus       106 V~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~-------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~la  164 (441)
                      |+-+.+... +.++|+.|.+||.|.+|.+++       .             ++...+..+.....++++.. ....+||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~-~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY-KKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec-CcceEEE
Confidence            444444222 356899999999999996521       0             01233344556677777622 2345777


Q ss_pred             EEeCCCcEEEEECCC--Cce-eeeecCCCCCeEEEEEecCC--C---cEEEEeecCCcEEEEEc
Q 013545          165 AGTEDVQVRLCDIAS--GAI-SQTLSGHRDGIMTVEWSTSS--E---WILVTGGCDGAIRFWDI  220 (441)
Q Consensus       165 s~s~d~~I~vwdl~~--~~~-~~~l~~h~~~v~~v~fsp~~--~---~~l~s~s~Dg~I~iWD~  220 (441)
                      +++....|.||-...  .+. ...-..|...|.+|+|.++.  .   ..+++++-.|.+-+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            777666666665432  221 11112377789999998875  1   14677888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13616 lipoprotein LpqB; Provisional

Probab=82.73  E-value=63  Score=33.39  Aligned_cols=107  Identities=15%  Similarity=0.165  Sum_probs=55.6

Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEe---eCCCCCceeeeeeeEEeccC-cceEEEeeCCCcEEEEeCCCceEEEEc-c
Q 013545          305 GAVTGLKVTEDGMYLLSAGSDSRIRLW---DVESGRNTLVNFETVRLQTS-KPIQLATTQDPAVVFVPCMTAVKAFDI-W  379 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~D~~i~~w---d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~wd~-~  379 (441)
                      +.|.++.|||||..|+-.. +++|.+=   ....+...+.....+..... ....+.+..++.+++........+|.+ .
T Consensus       448 g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v  526 (591)
T PRK13616        448 GPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL  526 (591)
T ss_pred             CCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence            4589999999999887665 4677763   22333322211111111122 235677888888664433333334443 1


Q ss_pred             CCceEeeecc--cccceEEEEEcCCCCeEEEeecCCc
Q 013545          380 SGKTCLTFRG--HYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       380 ~~~~~~~l~g--h~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                      .|.....+.+  ...++..|+=+++  .++.+..++.
T Consensus       527 DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        527 DGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             CCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            2332222233  2567788887763  3444444543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=82.24  E-value=53  Score=32.19  Aligned_cols=153  Identities=11%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             CCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEE---EeeCCCCEEEEEeCCCcEE
Q 013545           53 LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI---WYPVDTGLFVTGSYDHYVK  129 (441)
Q Consensus        53 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~---~~~~~~~~l~sgs~D~~i~  129 (441)
                      +++.+.|+.||..|.++||+...... +.. +      + ..+.    .-+.+|..+.   |.+......+.-=.-+.+-
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~-~~~-~------l-llE~----~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~  100 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEF-QPE-D------L-LLET----QLKDPILQVECGKFVSGSEDLQLAVLHPRKLS  100 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCC-CCc-c------E-EEEE----ecCCcEEEEEeccccCCCCcceEEEecCCEEE
Confidence            34456899999999999999843321 110 0      0 1111    0112232222   2121122222224455666


Q ss_pred             EEECCC--Ce--------E--EEEEecCCeeEEEeeccCCC--CccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          130 VWDTNC--TR--------V--VMNFKMPGKVYRTAMSPLAA--SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       130 iWd~~~--~~--------~--~~~~~~~~~~~~~~~~~~~~--~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      +|.+..  +.        .  +....+....+....-+++.  +...+++-+.||.+.+|+-+.-.....+.+ ---.-.
T Consensus       101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgP  179 (418)
T PF14727_consen  101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGP  179 (418)
T ss_pred             EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcC
Confidence            666521  11        1  11122233344455555542  246888899999999999877665555554 122235


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEc
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~  220 (441)
                      +.|+|..+. |++++.+..+.-|..
T Consensus       180 l~Y~~~tDs-fvt~sss~~l~~Yky  203 (418)
T PF14727_consen  180 LCYCPRTDS-FVTASSSWTLECYKY  203 (418)
T ss_pred             eEEeecCCE-EEEecCceeEEEecH
Confidence            677877664 678888888888864

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=81.96  E-value=36  Score=30.74  Aligned_cols=106  Identities=13%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             CeEEEEEccCCCEEEEee---cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEE-ccC
Q 013545          306 AVTGLKVTEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFD-IWS  380 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs---~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd-~~~  380 (441)
                      .+.+.++++++..++.-.   ...+++++.........  .     .........+.+++...++... ...+++. ..+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--~-----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--L-----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--c-----cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence            477889999999876655   33445555443322111  0     1122334456677666655443 3445553 233


Q ss_pred             CceEe-ee--cccccceEEEEEcCCCCeEEEee---cCCcEEEe
Q 013545          381 GKTCL-TF--RGHYEYVNCCCFSSQDQELYTGG---NDRQILVW  418 (441)
Q Consensus       381 ~~~~~-~l--~gh~~~v~~v~fspd~~~l~s~s---~D~~i~vW  418 (441)
                      +.... .+  .+-.+.|..+++||||..++-..   .++.|.|=
T Consensus        98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va  141 (253)
T PF10647_consen   98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA  141 (253)
T ss_pred             CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence            32211 11  11112799999999999977543   24445444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=81.54  E-value=56  Score=32.02  Aligned_cols=30  Identities=10%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                      +++..|++||+|++||--..+|++.+.+..
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence            578999999999999999999999888654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=80.61  E-value=5.1  Score=35.37  Aligned_cols=27  Identities=26%  Similarity=0.658  Sum_probs=23.6

Q ss_pred             EccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545          312 VTEDGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       312 ~s~dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                      +..++.+|++-+.+|.+++||+.+++.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~   44 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKA   44 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence            556788999999999999999998764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=80.55  E-value=41  Score=29.82  Aligned_cols=99  Identities=14%  Similarity=0.264  Sum_probs=61.0

Q ss_pred             eEEEccCCCCcEEEEeeCCCcEEEEE--CCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           47 NSLQVDLTEERYLLSGASDSSVAVYD--VQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      +.|+|+.+.-.+-..-+.+-+|.-||  +.++.       +...+.++.+.+..-.+|..+-- +++ ..+|.+.+++-.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~-------~snr~~i~dlrk~~~~e~~~PDG-m~I-D~eG~L~Va~~n  231 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD-------LSNRKVIFDLRKSQPFESLEPDG-MTI-DTEGNLYVATFN  231 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCccc-------ccCcceeEEeccCCCcCCCCCCc-ceE-ccCCcEEEEEec
Confidence            45677754445678888888998888  55543       23334444443321112221111 122 236778888888


Q ss_pred             CCcEEEEECCCCeEEEEEecCC-eeEEEeec
Q 013545          125 DHYVKVWDTNCTRVVMNFKMPG-KVYRTAMS  154 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~  154 (441)
                      -++|...|+.+|+.+.+++++- ++.+++|-
T Consensus       232 g~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            8999999999999999998873 34444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	441
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-61
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-10
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-10
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		4e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-06
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		9e-04

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/424 (31%), Positives = 204/424 (48%), Gaps = 63/424 (14%)
Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           M   +  R+ G   P        + R+  L+L+  +++   H G IN+L ++  E RY+L
Sbjct: 1   MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML 60
Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SG SD  + +YD++ ++           ++V  + + H   H+Y++ +  WYP DTG+F 
Sbjct: 61  SGGSDGVIVLYDLENSSRQS----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116
Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           + S+D  +KVWDTN  +    F     VY   MSP++  H L+A GT   +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176
Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
           + S  L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ   +    
Sbjct: 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---- 232
Query: 240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR 299
                            K +A +  +   NG                             
Sbjct: 233 -----------------KSQAVESANTAHNG----------------------------- 246
Query: 300 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359
                  V GL  T DG++LL+ G+D+R+RLW+  +G NTLVN+  V   + K ++   +
Sbjct: 247 ------KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300
Query: 360 --QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417
                  VFVP  + +  + ++SG+     +GHY+ V+CC F S  QELY+G  D  IL 
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 418 WCPS 421
           W PS
Sbjct: 361 WVPS 364

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 39/236 (16%)
Query: 36  KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
           K I++ H GS+  LQ D   ER +++G+SDS+V V+DV      E    +  H       
Sbjct: 166 KRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTG---EMLNTLIHH------- 212
Query: 96  KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD-TNCTRVVMNFKMPGKVYRTAMS 154
                       + +    + G+ VT S D  + VWD  + T + +   + G  +R A++
Sbjct: 213 ----------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG--HRAAVN 260
Query: 155 PLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214
            +      I + + D  +++ + ++    +TL+GH+ GI  +++      ++V+G  D  
Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNT 317
Query: 215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK---------PRAP 261
           IR WDI    C RVL +   +L R      ++ +S   +  +K         PRAP
Sbjct: 318 IRLWDIECGACLRVL-EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 372

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 44/258 (17%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
           I +G  D  +++ D  +    + L+GH   ++ +++    E +++TG  D  +R WD+  
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNT 202
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282
                 L      +           L    N+ +     + RS                 
Sbjct: 203 GEMLNTLIHHCEAV-----------LHLRFNNGMMVTCSKDRSI---------------- 235
Query: 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN 342
            +V     P  ++ +     H  AV    V  D  Y++SA  D  I++W+  +       
Sbjct: 236 -AVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTC------ 286
Query: 343 FETVRLQTSKPIQLATTQ--DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400
            E VR        +A  Q  D  VV       ++ +DI  G       GH E V C  F 
Sbjct: 287 -EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF- 344
Query: 401 SQDQELYTGGNDRQILVW 418
             ++ + +G  D +I VW
Sbjct: 345 -DNKRIVSGAYDGKIKVW 361

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           +LLS + D +V ++D+         G I   +++F        GH   +    W+ +   
Sbjct: 194 HLLSASDDHTVCLWDINAGP---KEGKIVDAKAIFT-------GHSAVVEDVAWHLLHES 243
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   T   H+D I  V WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG----EEQSAE 359
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 360 DAEDGPPEL 368

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           +LLS + D +V ++D+         G I   +++F        GH   +    W+ +   
Sbjct: 194 HLLSASDDHTVCLWDINAGP---KEGKIVDAKAIFT-------GHSAVVEDVAWHLLHES 243
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   T   H+D I  V WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG----EEQSAE 359
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 360 DAEDGPPEL 368

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           YLLS + D ++ ++D+  AT  E    +   +++F        GH   +    W+ +   
Sbjct: 196 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 245
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   +   H+D I  V+WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 361
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 362 DAEDGPPEL 370

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           YLLS + D ++ ++D+  AT  E    +   +++F        GH   +    W+ +   
Sbjct: 198 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 247
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   +   H+D I  V+WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 363
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 364 DAEDGPPEL 372

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 85  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 142
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 143 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 199
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 200 TASGQCLKTL 209

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 361
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 44  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 98
Query: 362 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           YLLS + D ++ ++D+  AT  E    +   +++F        GH   +    W+ +   
Sbjct: 200 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 249
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   +   H+D I  V+WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 365
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 366 DAEDGPPEL 374

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 87  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 144
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 145 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 201
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 202 TASGQCLKTL 211

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 361
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 46  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 100
Query: 362 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 80  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 137
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 138 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 194
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 195 TASGQCLKTL 204

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 32  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 92  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 131
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 181
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 182 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 232
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 184 TASGQCLKTL 193

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C + L    + +                N      
Sbjct: 81  SDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-----------FCCNFN------ 122
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
            PQ          +S        G   + L            AH   V+ +    DG  +
Sbjct: 123 -PQSNLIVSGSFDESVRIWDVKTGKCLKTL-----------PAHSDPVSAVHFNRDGSLI 170
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 221
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 63  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 120
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 121 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 177
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 178 TASGQCLKTL 187

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 75  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 114
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 164
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 215
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 184 TASGQCLKTL 193

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C + L    + +                N      
Sbjct: 81  SDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-----------FCCNFN------ 122
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
            PQ          +S        G   + L            AH   V+ +    DG  +
Sbjct: 123 -PQSNLIVSGSFDESVRIWDVKTGKCLKTL-----------PAHSDPVSAVHFNRDGSLI 170
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 221
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 78  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 63  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 120
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 121 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 177
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 178 TASGQCLKTL 187

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 75  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 114
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 164
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 215
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 184 TASGQCLKTL 193

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 109/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C + L    + +                  +  P+
Sbjct: 81  SDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC---------------CNFNPQ 124
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
           +    S    G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 125 SNLIVS----GSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 170
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 221
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 64  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 121
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 122 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 178
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 179 TASGQCLKTL 188

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 76  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 115
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 165
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 166 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 216
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 217 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 68  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 125
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 126 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 182
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 183 TASGQCLKTL 192

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 80  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 119
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 169
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 170 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 220
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 221 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 78  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 59  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 116
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 117 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 173
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 174 TASGQCLKTL 183

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 71  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 110
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 160
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 211
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 212 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 108/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 78  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K  +  +  P          AH   V+ +    DG  +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +AA + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 78  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 62  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 119
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 120 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 176
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 177 TASGQCLKTL 186

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 74  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 113
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K     +  P          AH   V+ +    DG  +
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 163
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 164 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 214
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 215 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 108/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +A+ + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
           + S  +LV+   D  ++ WD+    C                    K+L    N      
Sbjct: 78  SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
              + +   +G    SV     K  +  +  P          AH   V+ +    DG  +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
           +S+  D   R+WD  SG+   TL++ +      V+   +    LA T D           
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------ND 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
           +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           +LLS + D ++ ++D+         G +   +++F        GH   +    W+ +   
Sbjct: 192 HLLSASDDHTICLWDISAVP---KEGKVVDAKTIFT-------GHTAVVEDVSWHLLHES 241
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   +   H+D I  V+WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG----EEQSPE 357
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 358 DAEDGPPEL 366

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 98/257 (38%), Gaps = 56/257 (21%)
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
            +A G ED  +R+ DI +  I   L GH   I ++++  S +  LV+G  D  +R WD+R
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLR 195
Query: 222 RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281
              C   L                 S+  G  +        K  A G+  R   V     
Sbjct: 196 TGQCSLTL-----------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD-SE 237
Query: 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 341
            G + +RL     S  +  T H  +V  +  T DG  ++S   D  ++LW++++  N   
Sbjct: 238 TGFLVERLD----SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK-- 291
Query: 342 NFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401
                          + ++ P                 SG   +T+ GH ++V     + 
Sbjct: 292 ---------------SDSKTPN----------------SGTCEVTYIGHKDFVLSVATTQ 320
Query: 402 QDQELYTGGNDRQILVW 418
            D+ + +G  DR +L W
Sbjct: 321 NDEYILSGSKDRGVLFW 337

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
           +  D     T S D  VK+WD+   ++V  +    +          ++H+L+A G+ D  
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224
           ++L D+       T+ GH + +    +S   E +L +   DG +R WD+R A 
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSAN 783

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 236 LGRRP-PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ--SSVGRIPAKGSVRQRLHPG 292
           LGR+P P + +  L   + S V  +A  +    G+  R     + +   K   R  + P 
Sbjct: 562 LGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRP- 620
Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
                     H  AV     ++DG  + S G+D  ++++  E+G   L     ++    +
Sbjct: 621 ----------HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL----DIKAHEDE 666
Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIW---SGKTCLTFRGHYEYVNCCCFSSQDQELY-- 407
            +  A + D +  ++   +A K   IW   +GK   T+  H E VNCC F+++   L   
Sbjct: 667 VLCCAFSSDDS--YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 724
Query: 408 TGGNDRQILVW 418
           TG ND  + +W
Sbjct: 725 TGSNDFFLKLW 735

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
           +  D     T S D  VK+WD+   ++V  +    +          ++H+L+A G+ D  
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224
           ++L D+       T+ GH + +    +S   E +L +   DG +R WD+R A 
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSAN 776

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 236 LGRRP-PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ--SSVGRIPAKGSVRQRLHPG 292
           LGR+P P + +  L   + S V  +A  +    G+  R     + +   K   R  + P 
Sbjct: 555 LGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRP- 613
Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
                     H  AV     ++DG  + S G+D  ++++  E+G   L     ++    +
Sbjct: 614 ----------HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL----DIKAHEDE 659
Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIW---SGKTCLTFRGHYEYVNCCCFSSQDQELY-- 407
            +  A + D +  ++   +A K   IW   +GK   T+  H E VNCC F+++   L   
Sbjct: 660 VLCCAFSSDDS--YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717
Query: 408 TGGNDRQILVW 418
           TG ND  + +W
Sbjct: 718 TGSNDFFLKLW 728

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 136/328 (41%), Gaps = 29/328 (8%)
Query: 107 SSAIW---YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLI 163
           SS++W   +  D     + S D  VK+W+ N   +         V+  A SP   +   I
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT---I 195
Query: 164 AAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223
           A+ ++D  V+L +  +G + QTL+GH   +  V +S   +  + +   D  ++ W+ R  
Sbjct: 196 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN-RNG 252
Query: 224 GCFRVL---DQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ------KRSANGNGVRQS 274
              + L     S + +  RP      S S  +   +  R  Q        S++  GV  S
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 312
Query: 275 SVGRIPAKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332
             G+  A  S  + +     + Q     T H  +V G+  + DG  + SA  D  ++LW+
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS--GKTCLTFRGH 390
               RN  +  +T+   +S    +A + D   +     +  K   +W+  G+   T  GH
Sbjct: 373 ----RNGQL-LQTLTGHSSSVRGVAFSPDGQTI--ASASDDKTVKLWNRNGQLLQTLTGH 425
Query: 391 YEYVNCCCFSSQDQELYTGGNDRQILVW 418
              V    FS  DQ + +  +D+ + +W
Sbjct: 426 SSSVWGVAFSPDDQTIASASDDKTVKLW 453

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 60/308 (19%)
Query: 119 FVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
            V+GS D+ +KVW      C R ++     G V+ + M        +I +G+ D  +++ 
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGH--TGGVWSSQMRD-----NIIISGSTDRTLKVW 184
Query: 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235
           +  +G    TL GH     TV      E  +V+G  D  +R WDI    C  VL    + 
Sbjct: 185 NAETGECIHTLYGHTS---TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241
Query: 236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS 295
           + R      R+ +S   +  VK   P+  +                       LH     
Sbjct: 242 V-RCVQYDGRRVVSGAYDFMVKVWDPETETC----------------------LHT---- 274
Query: 296 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR--NTLVNFETVRLQTSKP 353
                  H   V  L+   DG++++S   D+ IR+WDVE+G   +TL   +++    +  
Sbjct: 275 ----LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL----TSG 324
Query: 354 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYTGG 410
           ++L   +D  +V     + VK +DI +G+   T +G   H   V C  F+     + T  
Sbjct: 325 MEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSS 379
Query: 411 NDRQILVW 418
           +D  + +W
Sbjct: 380 DDGTVKLW 387

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 36/230 (15%)
Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV---YRTAMSPLAAS--HMLIAAGTED 169
           D+ + ++GS D  V +W          F +P K    +   +S LA S  +    + + D
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229
             +RL D+ +G   +   GH+  + +V +S  +  IL + G +  I+ W+I     F   
Sbjct: 98  KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSA 156
Query: 230 DQSQSQ----LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 285
           ++          R  P++K  +        V+P AP   S   +G               
Sbjct: 157 EKENHSDWVSCVRYSPIMKSAN-------KVQPFAPYFASVGWDG--------------- 194
Query: 286 RQRLHPGMLSSQDRAT--AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333
             RL     + Q R T  AH   V  L ++ +G Y+ + G D ++ +WD+
Sbjct: 195 --RLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 113/319 (35%), Gaps = 70/319 (21%)
Query: 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILV 207
           V R    P+ +   ++ + +ED  +++ D  +G   +TL GH D +  + +  S + +L 
Sbjct: 111 VTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLA 166
Query: 208 TGGCDGAIRFWDIRRAGCFRVL---DQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK- 263
           +   D  I+ WD +   C R +   D + S +   P       +SA ++ ++K    Q  
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTG 224
Query: 264 --------------------------RSANGNGVRQSSVGRIPAKGSVRQRLH------- 290
                                       +N   VR   V     K  +R+  H       
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 291 --PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR--NTLVNFET- 345
                 SS   AT      +G    + G +LLS   D  I++WDV +G    TLV  +  
Sbjct: 285 APESSYSSISEATGSETKKSG----KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 346 ---VRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW--SGKTCL-TFRGHYEYVNCCCF 399
              V   +     L+   D            K   +W    K C+ T   H  +V    F
Sbjct: 341 VRGVLFHSGGKFILSCADD------------KTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388
Query: 400 SSQDQELYTGGNDRQILVW 418
                 + TG  D+ + VW
Sbjct: 389 HKTAPYVVTGSVDQTVKVW 407

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 40  SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGG-GHIAKHRSVFVVDKQH 98
           S H  S+ +++ +  ++  L SG ++  + ++D+ + T+       +   +S+  VD+  
Sbjct: 110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE-- 167
Query: 99  EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV--MNFKMPGKVYRTAMS-- 154
                  + S  W      +F +    ++  +WD    + V  +++  P    +  +S  
Sbjct: 168 -------VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220
Query: 155 ---PLAASHMLIAAGTE-DVQVRLCDIASGAIS-QTLS-GHRDGIMTVEWSTSSEWILVT 208
              P  ++ +  A G++ D  + + D+ +     QTL+ GH+ GI++++W    E +L++
Sbjct: 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280
Query: 209 GGCDGAIRFWDIRRA 223
            G D  +  W+   A
Sbjct: 281 SGRDNTVLLWNPESA 295

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 38  IVSPHKGSINSLQ-VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK 96
           +   H  ++  L  V+    +Y+++G+ D+++ V+ + + +     G    +  VF   +
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 97  QHEH------GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR 150
           ++ +      GH  ++ +   +     + V+GSYD+ + VWD    + +  + + G   R
Sbjct: 258 ENPYFVGVLRGHXASVRTVSGHG---NIVVSGSYDNTLIVWDVAQXKCL--YILSGHTDR 312
Query: 151 TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG 210
              +          + + D  +R+ D+ +G +  TL GH   +  +  S      LV+  
Sbjct: 313 IYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK---FLVSAA 369
Query: 211 CDGAIRFWD 219
            DG+IR WD
Sbjct: 370 ADGSIRGWD 378

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 110/266 (41%), Gaps = 33/266 (12%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
           +  G +D  +R+ D  +      LSGH  G+  ++++     ILV+G  D  +R WDI++
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK 192
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282
             C  V +   S + R   +++ K++              K    G+      V ++P +
Sbjct: 193 GCCTHVFEGHNSTV-RCLDIVEYKNI--------------KYIVTGSRDNTLHVWKLPKE 237
Query: 283 GSV----RQRLHPGMLSSQDRATAHYGAVTG-----LKVTEDGMYLLSAGSDSRIRLWDV 333
            SV     +  +P +  + +      G + G       V+  G  ++S   D+ + +WDV
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Query: 334 ESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE 392
              +   +++  T R+ ++    +   +    +     T ++ +D+ +G+   T +GH  
Sbjct: 298 AQXKCLYILSGHTDRIYST----IYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTA 353
Query: 393 YVNCCCFSSQDQELYTGGNDRQILVW 418
            V     S  D+ L +   D  I  W
Sbjct: 354 LVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 38  IVSPHKGSINSLQ-VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK 96
           +   H  ++  L  V+    +Y+++G+ D+++ V+ + + +     G    +  VF   +
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 97  QHEH------GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR 150
           ++ +      GH  ++ +   +     + V+GSYD+ + VWD    + +  + + G   R
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHG---NIVVSGSYDNTLIVWDVAQMKCL--YILSGHTDR 312
Query: 151 TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG 210
              +          + + D  +R+ D+ +G +  TL GH   +  +  S      LV+  
Sbjct: 313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---FLVSAA 369
Query: 211 CDGAIRFWD 219
            DG+IR WD
Sbjct: 370 ADGSIRGWD 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 110/266 (41%), Gaps = 33/266 (12%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
           +  G +D  +R+ D  +      LSGH  G+  ++++     ILV+G  D  +R WDI++
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK 192
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282
             C  V +   S + R   +++ K++              K    G+      V ++P +
Sbjct: 193 GCCTHVFEGHNSTV-RCLDIVEYKNI--------------KYIVTGSRDNTLHVWKLPKE 237
Query: 283 GSV----RQRLHPGMLSSQDRATAHYGAVTG-----LKVTEDGMYLLSAGSDSRIRLWDV 333
            SV     +  +P +  + +      G + G       V+  G  ++S   D+ + +WDV
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Query: 334 ESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE 392
              +   +++  T R+ ++    +   +    +     T ++ +D+ +G+   T +GH  
Sbjct: 298 AQMKCLYILSGHTDRIYST----IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Query: 393 YVNCCCFSSQDQELYTGGNDRQILVW 418
            V     S  D+ L +   D  I  W
Sbjct: 354 LVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+ V  T+  Y+LSG+ D +V +++ +     E                Q   G
Sbjct: 96  HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
           H++ +    + P D   F +G  D  VKVW  +  +   NF +     R        PL 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +I A ++D+ +++ D  + +   TL GH   +    +  +   I+++G  DG ++ 
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
           W+
Sbjct: 255 WN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+ V  T+  Y+LSG+ D +V +++ +     E                Q   G
Sbjct: 96  HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
           H++ +    + P D   F +G  D  VKVW  +  +   NF +     R        PL 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +I A ++D+ +++ D  + +   TL GH   +    +  +   I+++G  DG ++ 
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
           W+
Sbjct: 255 WN 256

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 114/278 (41%), Gaps = 40/278 (14%)
Query: 62  GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121
           G  DS+ +++++    D +G   +++  +          GHK   SS  + P      +T
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLT----------GHKGYASSCQYVPDQETRLIT 175
Query: 122 GSYDHYVKVWDTNCTRVVMNF--KMP----GKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           GS D    +WD    + +  F  + P      V   +++ L A+  +  +G+ D  VRL 
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN--MFISGSCDTTVRLW 233
Query: 176 D--IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ 233
           D  I S A+ +T  GH   I +V++    +    TG  DG  R +D+R     +V ++  
Sbjct: 234 DLRITSRAV-RTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREP 291
Query: 234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM 293
            +     P++   +       S+  R      +NG+     ++            L   +
Sbjct: 292 DRNDNELPIVTSVAF------SISGRLLFAGYSNGDCYVWDTL------------LAEMV 333
Query: 294 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
           L+      +H G ++ L ++ DG  L +   D  +++W
Sbjct: 334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 135/372 (36%), Gaps = 51/372 (13%)
Query: 72  DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW 131
           DV++ +  +G   ++ + +  V  +  + GH   + S  W P +    V+ S D  + VW
Sbjct: 36  DVEKYSKAQGRTAVSFNPTDLVCCRTLQ-GHSGKVYSLDWTP-EKNWIVSASQDGRLIVW 93
Query: 132 DTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-------IS 183
           +   ++     K+    V   A +P   S   +A G  D    + +++S A       +S
Sbjct: 94  NALTSQKTHAIKLHCPWVMECAFAPNGQS---VACGGLDSACSIFNLSSQADRDGNMPVS 150
Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
           + L+GH+    + ++    E  L+TG  D     WD+          Q  S  G   P  
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-------QRISIFGSEFP-- 201
Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT-- 301
                 +G  + V   +    +AN           +   GS    +    L    RA   
Sbjct: 202 ------SGHTADVLSLSINSLNAN-----------MFISGSCDTTVRLWDLRITSRAVRT 244
Query: 302 --AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETVRLQTSKPI--QL 356
              H G +  +K   DG    +   D   RL+D+ +G    V N E  R     PI   +
Sbjct: 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304
Query: 357 ATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTF----RGHYEYVNCCCFSSQDQELYTGGN 411
           A +    ++F          +D    +  L        H   ++C   SS    L TG  
Sbjct: 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364
Query: 412 DRQILVWCPSRH 423
           D+ + +W  S H
Sbjct: 365 DKNLKIWAFSGH 376

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 194 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 235
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 236 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+ V  T+  Y+LSG+ D +V +++ +     E                Q   G
Sbjct: 96  HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAMSPLA 157
           H++ +    + P D   F +G  D  VKVW  +  +   NF +       V      PL 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +I A ++D+ +++ D  + +   TL GH   +    +  +   I+++G  DG ++ 
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
           W+
Sbjct: 255 WN 256

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--------GKVYRTA 152
           GH   +    W P +  +  +GS D  V VW+     +V+  + P         +V   A
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 153 MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWSTSSEWILVTGG 210
             P  A ++L++AG ++V + + D+ +GA   TL    H D I +V+WS     ++ T  
Sbjct: 139 WHP-TAQNVLLSAGCDNV-ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSC 195
Query: 211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
            D  +R  + R+     V ++ +   G RP
Sbjct: 196 RDKRVRVIEPRKGTV--VAEKDRPHEGTRP 223

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+ V  T+  Y+LSG+ D +V +++ +     E                Q   G
Sbjct: 96  HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
           H++ +    + P D   F +G  D  VKVW  +  +   NF +     R        PL 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +I A ++D+ +++ D  + +   TL GH   +    +  +   I+++G  DG ++ 
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
           W+
Sbjct: 255 WN 256

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 42/247 (17%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR-----TAMSP 155
           GH   ++     P    + ++ S D  + +W    TR   N+ +P +  R      +   
Sbjct: 13  GHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215
           +++      +G+ D  +RL D+ +G  ++   GH   +++V +S+ +  I V+G  D  I
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTI 129
Query: 216 RFWDIRRAGCFRVLDQSQSQ----LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271
           + W+      + V D+S S+    +   P       +S G +  VK           N +
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
                                          H G +  + V+ DG    S G D +  LW
Sbjct: 190 ------------------------------GHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 332 DVESGRN 338
           D+  G++
Sbjct: 220 DLNEGKH 226

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 17/199 (8%)
Query: 149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW-ILV 207
           Y +A S    S M I   + D    L D+ SG + Q+  GH   ++ ++ + S      V
Sbjct: 156 YLSACS-FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214
Query: 208 TGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS------------ 255
           +GGCD     WD+R   C +  +  +S +          + ++G + +            
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA---VTGLKV 312
           V   + +      + V  S  GR+   G     ++   +    R +  +G    V+ L+V
Sbjct: 275 VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV 334
Query: 313 TEDGMYLLSAGSDSRIRLW 331
           + DG    S   D  +R+W
Sbjct: 335 SPDGTAFCSGSWDHTLRVW 353

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 42/247 (17%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR-----TAMSP 155
           GH   ++     P    + ++ S D  + +W    TR   N+ +P +  R      +   
Sbjct: 36  GHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215
           +++      +G+ D  +RL D+ +G  ++   GH   +++V +S+ +  I V+G  D  I
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTI 152
Query: 216 RFWDIRRAGCFRVLDQSQSQ----LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271
           + W+      + V D+S S+    +   P       +S G +  VK           N +
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
                                          H G +  + V+ DG    S G D +  LW
Sbjct: 213 ------------------------------GHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 332 DVESGRN 338
           D+  G++
Sbjct: 243 DLNEGKH 249

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 290 HPGMLS--SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
           HPG  S  SQ         +   K+  DG  L+  G  S + +WD+ +    +       
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI----KAE 136
Query: 348 LQTSKP--IQLATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ 404
           L +S P    LA + D  V F  C    +  +D+ +      F+GH +  +C   S+   
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 405 ELYTGGNDRQILVW 418
           +L+TGG D  +  W
Sbjct: 197 KLWTGGLDNTVRSW 210

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
           D  +RL D+A+G   Q   GH+  +M+V+    +  ++++G  D  I+ W I +  C   
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLAT 143
Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSV-KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287
           L                     G N  V + R      A+ + V   S G       + +
Sbjct: 144 L--------------------LGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVK 179
Query: 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
             +      +     H   +  L  + DG  + SAG D  I LW++ + +       T+ 
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLS 235
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--------YVNCCCF 399
            Q  +   LA + +   +     T +K F +         R  +         +     +
Sbjct: 236 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 400 SSQDQELYTGGNDRQILVW 418
           S+  Q L+ G  D  I VW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
           D  +RL D+A+G   Q   GH+  +M+V+    +  ++++G  D  I+ W I +  C   
Sbjct: 80  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLAT 137
Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSV-KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287
           L                     G N  V + R      A+ + V   S G       + +
Sbjct: 138 L--------------------LGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVK 173
Query: 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
             +      +     H   +  L  + DG  + SAG D  I LW++ + +       T+ 
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLS 229
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--------YVNCCCF 399
            Q  +   LA + +   +     T +K F +         R  +         +     +
Sbjct: 230 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 288
Query: 400 SSQDQELYTGGNDRQILVW 418
           S+  Q L+ G  D  I VW
Sbjct: 289 SADGQTLFAGYTDNVIRVW 307

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.59
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.54
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.47
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.44
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.43
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.42
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.41
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.4
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.38
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.38
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.38
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.37
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.3
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.28
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.27
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.21
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.2
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.19
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.15
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.14
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.14
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.11
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.11
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.07
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.04
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.0
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.98
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.96
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.95
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.93
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.92
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.9
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.87
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.87
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.84
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.79
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.77
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.77
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.75
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.66
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.64
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.62
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.6
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.57
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.53
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.45
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.34
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.33
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.33
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.33
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.3
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.29
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.26
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.22
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.17
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.08
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.02
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.02
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.97
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.95
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.94
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.9
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.82
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.73
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.58
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.54
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.54
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.5
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.46
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.44
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.36
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.23
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.23
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.22
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.21
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.2
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.18
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.9
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.88
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.85
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.84
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.8
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.75
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.72
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.6
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.6
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.06
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.79
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.65
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.63
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.24
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.77
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	94.54
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.41
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.3
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.1
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.0
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.75
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	93.41
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.31
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.09
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.37
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	90.91
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	90.65
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.05
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.6
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	88.37
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.83
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.92
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	85.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	85.83
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	85.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	84.34
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	84.32
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.31
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	82.05
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	81.15
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	80.39
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	80.18

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.9e-44  Score=337.59  Aligned_cols=289  Identities=20%  Similarity=0.309  Sum_probs=242.6

Q ss_pred             eecCCCCceeEEEccCC---CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           38 IVSPHKGSINSLQVDLT---EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      .+.+|.+.|++++|+|+   ++++|+|||.|++|+|||+......            .   .....+|..+|.++.+++ 
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~------------~---~~~l~gh~~~v~~~~~~~-   90 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD------------L---QWSLEGHQLGVVSVDISH-   90 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE------------E---EEEECCCSSCEEEEEECS-
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee------------e---eeeeccCCCCEEEEEECC-
Confidence            34689999999999864   3568999999999999998643210            0   112458999999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                      ++.+++|++.|++|++||+.+++.+..+.. ...+..+.++|++   .+|++|+.|+.|++||+++++....+..|...|
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v  167 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI  167 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS---SEEEEECTTSEEEEEETTTCSEEEEEECSSSCE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC---CEEEEEcCCCcEEEEEcCCCceeEEecCCCceE
Confidence            688999999999999999999998887764 3456677888754   489999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .+++|+|+++ +|++|+.|+.|++||+++++++..+                                            
T Consensus       168 ~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~--------------------------------------------  202 (321)
T 3ow8_A          168 LSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTL--------------------------------------------  202 (321)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE--------------------------------------------
T ss_pred             EEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEE--------------------------------------------
Confidence            9999999998 5789999999999999876544332                                            


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                 .+|..+|++++|+|++++|++|+.|++|++||+.+++..    .....+....
T Consensus       203 ---------------------------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h~~~v  251 (321)
T 3ow8_A          203 ---------------------------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA----GTLSGHASWV  251 (321)
T ss_dssp             ---------------------------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE----EEECCCSSCE
T ss_pred             ---------------------------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee----EEEcCCCCce
Confidence                                       246678999999999999999999999999999876532    2233344556


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ..++++|++..+++++. +.+++||+.+++++.++.+|.+.|++++|+|++++|+|++.|++|+||+.+
T Consensus       252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            78899999998888765 689999999999999999999999999999999999999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-43  Score=336.28  Aligned_cols=287  Identities=16%  Similarity=0.340  Sum_probs=237.2

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++|+| ++++|+||+.||+|+|||+.++...                 .....|...|.++.++| +
T Consensus        48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~  108 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKV-----------------HAIPLRSSWVMTCAYAP-S  108 (340)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEE-----------------EEEECSSSCEEEEEECT-T
T ss_pred             heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcc-----------------eEeecCCccEEEEEECC-C
Confidence            456789999999999996 5789999999999999998765421                 11236888899999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe----EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTR----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                      +.+|++|+.|++|++||+.++.    ....+. +.+.+..+.+.+..    .+++++.|+.|++||+++++.+..+.+|.
T Consensus       109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~s~d~~i~~wd~~~~~~~~~~~~h~  184 (340)
T 1got_B          109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFTGHT  184 (340)
T ss_dssp             SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT----EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC----cEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence            8899999999999999998753    333333 34567777777642    48889999999999999999999999999


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      +.|.+++|+|+++ +|++|+.|++|++||++++.+...+                                         
T Consensus       185 ~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~-----------------------------------------  222 (340)
T 1got_B          185 GDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTF-----------------------------------------  222 (340)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEE-----------------------------------------
T ss_pred             CceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEE-----------------------------------------
Confidence            9999999999987 5799999999999999876543322                                         


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                    .+|...|++++|+|++.+|++|+.|++|++||+.+++... .+.. ....
T Consensus       223 ------------------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~-~~~~  270 (340)
T 1got_B          223 ------------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSH-DNII  270 (340)
T ss_dssp             ------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECC-TTCC
T ss_pred             ------------------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-EEcc-CCcc
Confidence                                          3577789999999999999999999999999998765321 1110 0011


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      .....++++|++.++++++. +.+++||+.+++.+.++.+|.++|.+++|+|||++|+|||.|++|+||+
T Consensus       271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            23567889999999888765 6899999999999999999999999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.6e-44  Score=347.84  Aligned_cols=286  Identities=18%  Similarity=0.310  Sum_probs=242.0

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|.+.|++++|+| ++.+|+||+.||+|+|||+.++...                 ....+|...|.++.|++ ++
T Consensus       102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~-----------------~~l~~h~~~V~~v~~~~-~~  162 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE-----------------RTLKGHTDSVQDISFDH-SG  162 (410)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCC-----------------EEECCCSSCEEEEEECT-TS
T ss_pred             EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEeccCCcEEEEEEcC-CC
Confidence            35679999999999997 5779999999999999999876421                 12358999999999987 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      .+|+||+.|++|++||+.+++++..+. +.+.+.++.++|.+   .+|++|+.|+.|++||++++.++.++.+|...|.+
T Consensus       163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~  239 (410)
T 1vyh_C          163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM  239 (410)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence            899999999999999999988877665 34568889998854   47899999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +.|+|++. +|++|+.|++|++||++++.+...+                                              
T Consensus       240 ~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~----------------------------------------------  272 (410)
T 1vyh_C          240 VRPNQDGT-LIASCSNDQTVRVWVVATKECKAEL----------------------------------------------  272 (410)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTTCCEEEEE----------------------------------------------
T ss_pred             EEECCCCC-EEEEEcCCCeEEEEECCCCceeeEe----------------------------------------------
Confidence            99999987 5799999999999999876554433                                              


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccC--------------------CCEEEEeecCCcEEEeeCCC
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--------------------GMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--------------------g~~l~sgs~D~~i~~wd~~~  335 (441)
                                               .+|...|.+++|+|+                    |.+|++|+.|++|++||+.+
T Consensus       273 -------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          273 -------------------------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             -------------------------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             -------------------------cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence                                     234455666666664                    77999999999999999998


Q ss_pred             CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545          336 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                      ++..    .....+......+++++++.++++++. +.+++||+.+++++.++.+|...|++++|+|++.+|+|||.|++
T Consensus       328 ~~~~----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          328 GMCL----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             TEEE----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             CceE----EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            7532    233334555667899999998888765 68999999999999999999999999999999999999999999


Q ss_pred             EEEeCC
Q 013545          415 ILVWCP  420 (441)
Q Consensus       415 i~vW~~  420 (441)
                      |++|+.
T Consensus       404 i~vW~~  409 (410)
T 1vyh_C          404 VKVWEC  409 (410)
T ss_dssp             EEEEC-
T ss_pred             EEEEeC
Confidence            999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.6e-43  Score=330.67  Aligned_cols=295  Identities=20%  Similarity=0.322  Sum_probs=240.6

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++|+|+|.++++|+|||.|++|++||+......       ....     .....+|...|.++.+++ +
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-------~~~~-----~~~~~~h~~~v~~~~~s~-d   76 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-------FGVP-----VRSFKGHSHIVQDCTLTA-D   76 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-------EEEE-----EEEEECCSSCEEEEEECT-T
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-------cccc-----ceEEeCCcccEEEEEECC-C
Confidence            34578999999999999866689999999999999998643210       0001     123458999999999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      +.+|+||+.|++|++||+.+++.+..+. +.+.+.++.+++..   .+|++|+.|+.|++||++ +..+..+.+|...|.
T Consensus        77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~  152 (319)
T 3frx_A           77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA---SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS  152 (319)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS---CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence            8999999999999999999999888776 45678888888753   489999999999999996 556778899999999


Q ss_pred             EEEEecCCC-----cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          195 TVEWSTSSE-----WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       195 ~v~fsp~~~-----~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ++.|+|..+     .++++++.|++|++||+++..+...                                         
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-----------------------------------------  191 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-----------------------------------------  191 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-----------------------------------------
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-----------------------------------------
Confidence            999998632     2689999999999999976432211                                         


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  349 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~  349 (441)
                                                    ..+|...|++++|+|+|++|++|+.|++|++||+.+++...    ... .
T Consensus       192 ------------------------------~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~----~~~-~  236 (319)
T 3frx_A          192 ------------------------------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY----TLS-A  236 (319)
T ss_dssp             ------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE----EEE-C
T ss_pred             ------------------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE----Eec-C
Confidence                                          23577889999999999999999999999999999865321    212 2


Q ss_pred             cCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeec--------ccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          350 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR--------GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~--------gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ......++++|++..++++....+++|++..+.....+.        .|...+.+++|||||++|++|+.|++|+||++.
T Consensus       237 ~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          237 QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            355678999999999998888899999998877666553        456789999999999999999999999999986


Q ss_pred             CC
Q 013545          422 RH  423 (441)
Q Consensus       422 ~~  423 (441)
                      +.
T Consensus       317 t~  318 (319)
T 3frx_A          317 TA  318 (319)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-42  Score=332.57  Aligned_cols=289  Identities=18%  Similarity=0.310  Sum_probs=235.4

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++|+| ++++|+|||.||+|+|||..++...                 .....|...|.++.|+| +
T Consensus        57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~-----------------~~~~~~~~~v~~~~~sp-~  117 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKE-----------------HAVTMPCTWVMACAYAP-S  117 (354)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-----------------EEEECSSSCCCEEEECT-T
T ss_pred             EEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcc-----------------eEEecCCCCEEEEEECC-C
Confidence            456789999999999997 5789999999999999998765321                 01125777899999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe------EEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTR------VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~  188 (441)
                      +.+|++|+.|+++++|++....      ....+ .+.+.+..+.+++..   ..|++++.|+.|++||+++++++..+.+
T Consensus       118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~s~D~~v~lwd~~~~~~~~~~~~  194 (354)
T 2pbi_B          118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD---MQILTASGDGTCALWDVESGQLLQSFHG  194 (354)
T ss_dssp             SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence            8999999999999999986431      12222 345667888888753   4788999999999999999999999999


Q ss_pred             CCCCeEEEEEecCC-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545          189 HRDGIMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN  267 (441)
Q Consensus       189 h~~~v~~v~fsp~~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (441)
                      |...|.+++|+|+. ..+|++|+.||+|++||++++.+...+                                      
T Consensus       195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--------------------------------------  236 (354)
T 2pbi_B          195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--------------------------------------  236 (354)
T ss_dssp             CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------------------------
T ss_pred             CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------
Confidence            99999999998852 136899999999999999876554332                                      


Q ss_pred             CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545          268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  347 (441)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~  347 (441)
                                                       .+|...|++++|+|++.+|++|+.|++|++||+.+.+... .+.. .
T Consensus       237 ---------------------------------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-~~~~-~  281 (354)
T 2pbi_B          237 ---------------------------------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSK-E  281 (354)
T ss_dssp             ---------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECC-T
T ss_pred             ---------------------------------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcC-C
Confidence                                             2467789999999999999999999999999998764211 1110 0


Q ss_pred             eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          348 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      ........+++++++.++++++. +.+++||+.+++.+..+.+|.++|++++|+|||++|+||+.|++|+||+
T Consensus       282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            01123456888999999888765 6899999999999999999999999999999999999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=330.17  Aligned_cols=362  Identities=36%  Similarity=0.694  Sum_probs=276.9

Q ss_pred             cccccccCcCCchhhhhhhhccccceecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCc
Q 013545            5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGH   84 (441)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~   84 (441)
                      +.+|+.+.-.+..+.......++..++......++.+|.+.|++++|+|.++++|++|+.||+|+|||+.++.....   
T Consensus         5 l~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---   81 (408)
T 4a11_B            5 LSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY---   81 (408)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC---
T ss_pred             ccccccCccCccceeeccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce---
Confidence            44555665566656666666677777777777888999999999999974678999999999999999987653211   


Q ss_pred             eeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEE
Q 013545           85 IAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIA  164 (441)
Q Consensus        85 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  164 (441)
                       ...............+|...|.++.|+|.++.+|++++.|++|++||+.+++.+..+.....+..+.+.+...+..+++
T Consensus        82 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B           82 -YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             -EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEE
T ss_pred             -EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEE
Confidence             0111111222233457999999999998778899999999999999999999999888888899999998877777999


Q ss_pred             EEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcc
Q 013545          165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLL  243 (441)
Q Consensus       165 s~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~  243 (441)
                      +++.|+.|++||+++++.+..+.+|...|.+++|+|+++++|++++.||.|++||++... ++..++......       
T Consensus       161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------  233 (408)
T 4a11_B          161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK-------  233 (408)
T ss_dssp             EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS-------
T ss_pred             EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc-------
Confidence            999999999999999999999999999999999999998778999999999999998653 222221100000       


Q ss_pred             cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee
Q 013545          244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG  323 (441)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  323 (441)
                                                                       ..........|...|.+++|+|++.+|++++
T Consensus       234 -------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          234 -------------------------------------------------SQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             -------------------------------------------------CCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             -------------------------------------------------ceeeccccccccCceeEEEEcCCCCEEEEec
Confidence                                                             0000011246788999999999999999999


Q ss_pred             cCCcEEEeeCCCCCceeeeeeeEEe--ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          324 SDSRIRLWDVESGRNTLVNFETVRL--QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       324 ~D~~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      .|++|++||+.+++...........  ................++....+.+++||+.+++.+..+.+|.+.|.+++|+|
T Consensus       265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  344 (408)
T 4a11_B          265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS  344 (408)
T ss_dssp             TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred             CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence            9999999999987643211111000  11112223333445566666678999999999999999999999999999999


Q ss_pred             CCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          402 QDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       402 d~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ++++|+||+.|+.|++|++.+....
T Consensus       345 ~~~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          345 NFQELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             TTTEEEEEETTSCEEEEEECC----
T ss_pred             CCCEEEEECCCCeEEEEeCCCCCcc
Confidence            9999999999999999999987754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.5e-43  Score=338.90  Aligned_cols=296  Identities=19%  Similarity=0.338  Sum_probs=235.0

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++|+| ++++|+|||.||+|+|||+.++...                 ....+|...|.+++|+| +
T Consensus        59 ~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~~~s~-~  119 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKT-----------------HAIKLHCPWVMECAFAP-N  119 (380)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEE-----------------EEEECCCTTCCCCEECT-T
T ss_pred             eecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccc-----------------eEEecCCCCEEEEEECC-C
Confidence            345789999999999997 5789999999999999998765321                 11247888899999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeE-------EEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRV-------VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-  186 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-  186 (441)
                      +.+|++|+.|++|++||+.+...       ...+ .+.+.+..+.+.+..  ...|++|+.|+.|++||+++++.+..+ 
T Consensus       120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~  197 (380)
T 3iz6_a          120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ--ETRLITGSGDQTCVLWDVTTGQRISIFG  197 (380)
T ss_dssp             SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS--SSCEEEECTTSCEEEECTTTCCEEEEEC
T ss_pred             CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC--CCEEEEECCCCcEEEEEcCCCcEEEEee
Confidence            89999999999999999865321       1111 123445666666643  346899999999999999999988766 


Q ss_pred             ----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545          187 ----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP  261 (441)
Q Consensus       187 ----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (441)
                          .+|...|.++.|+|.+..+|++|+.|++|++||++.. .++.                                  
T Consensus       198 ~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~----------------------------------  243 (380)
T 3iz6_a          198 SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR----------------------------------  243 (380)
T ss_dssp             CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE----------------------------------
T ss_pred             cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE----------------------------------
Confidence                6899999999998844457899999999999998732 1111                                  


Q ss_pred             CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee
Q 013545          262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~  341 (441)
                                                           ...+|.+.|++|+|+|++.+|+||+.|++|++||+.+++....
T Consensus       244 -------------------------------------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          244 -------------------------------------TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             -------------------------------------EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             -------------------------------------EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence                                                 1246888999999999999999999999999999998753211


Q ss_pred             eeeeEE----eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee----cccccceEEEEEcCCCCeEEEeecC
Q 013545          342 NFETVR----LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF----RGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       342 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l----~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                       +....    ........+++++++.++++++. +.+++||+.+++....+    .+|.+.|++++|+|||++|+|||.|
T Consensus       287 -~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  365 (380)
T 3iz6_a          287 -YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD  365 (380)
T ss_dssp             -ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred             -ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence             11100    00112457899999999988865 68999999999888776    7899999999999999999999999


Q ss_pred             CcEEEeCCCCCC
Q 013545          413 RQILVWCPSRHI  424 (441)
Q Consensus       413 ~~i~vW~~~~~~  424 (441)
                      ++|+||+++.++
T Consensus       366 ~~i~iW~~~~~~  377 (380)
T 3iz6_a          366 KNLKIWAFSGHR  377 (380)
T ss_dssp             SCEEEEECCSSS
T ss_pred             CCEEEEecCCCc
Confidence            999999998765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-41  Score=322.61  Aligned_cols=298  Identities=19%  Similarity=0.301  Sum_probs=234.1

Q ss_pred             eeeecCCCCceeEEEc-----cCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEE
Q 013545           36 KEIVSPHKGSINSLQV-----DLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI  110 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~-----s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  110 (441)
                      ..++.||.+.|++++|     ++.++++|+||+.|++|+|||+.+......   .  ...     .....+|...|.++.
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~---~--~~~-----~~~l~~h~~~V~~~~   83 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY---F--GIP-----HKALTGHNHFVSDLA   83 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB---S--EEE-----EEEECCCSSCEEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc---c--ccc-----cchhccCCCceEEEE
Confidence            4567899999999999     655788999999999999999875432100   0  000     122458999999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee--eec
Q 013545          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ--TLS  187 (441)
Q Consensus       111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~--~l~  187 (441)
                      +++ ++.+++||+.|++|++||+++++.+..+. +.+.+.++.++|++   .+|++++.|+.|++||+.......  ...
T Consensus        84 ~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R           84 LSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---RQILSAGAEREIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             ECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---TEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred             ECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---CEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence            987 78899999999999999999999887776 45778999999864   478999999999999997443222  223


Q ss_pred             CCCCCeEEEEEecCCC---------cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          188 GHRDGIMTVEWSTSSE---------WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       188 ~h~~~v~~v~fsp~~~---------~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      +|...|.+++|+|++.         .+|++++.|++|++||.+. .+..                               
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~-------------------------------  207 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRY-------------------------------  207 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEE-------------------------------
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeE-------------------------------
Confidence            7999999999999862         3689999999999999432 1111                               


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                                              ...+|...|++++|+|+|++|++|+.|++|++||+.....
T Consensus       208 ----------------------------------------~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          208 ----------------------------------------TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             ----------------------------------------EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred             ----------------------------------------EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence                                                    1245778899999999999999999999999999954332


Q ss_pred             eeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEe--eec-----------ccccceEEEEEcCCCCe
Q 013545          339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL--TFR-----------GHYEYVNCCCFSSQDQE  405 (441)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~--~l~-----------gh~~~v~~v~fspd~~~  405 (441)
                      ....+    ........++++|++.+++++....+++|++.+++...  ++.           +|...|++++|+|+|++
T Consensus       248 ~~~~~----~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  323 (343)
T 2xzm_R          248 PQREF----DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK  323 (343)
T ss_dssp             CSEEE----ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred             cceee----cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence            21111    12334667899999988887777899999998776543  443           78899999999999999


Q ss_pred             EEEeecCCcEEEeCCCCC
Q 013545          406 LYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       406 l~s~s~D~~i~vW~~~~~  423 (441)
                      |++|+.|++|++|+..++
T Consensus       324 l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          324 LFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEEEETTSEEEEEEEEEE
T ss_pred             EEEecCCceEEEEEEEcc
Confidence            999999999999997653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.7e-41  Score=315.41  Aligned_cols=290  Identities=17%  Similarity=0.279  Sum_probs=235.5

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      .+.+.+|.+.|++++|+| ++++|+||+.||+|+|||+.++...                 ....+|...|.++.|++ +
T Consensus         6 ~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~-----------------~~~~~~~~~v~~~~~~~-~   66 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEV-----------------RSIQVTETPVRAGKFIA-R   66 (304)
T ss_dssp             EEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEEEG-G
T ss_pred             EEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcee-----------------EEeeccCCcEEEEEEeC-C
Confidence            456789999999999997 5789999999999999999765321                 11236888999999987 6


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCe
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI  193 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v  193 (441)
                      +++|++|+.|++|++||+.+++++..+.. .+.+.++.++|..   .+|++|+.|+.|++||++++ .....+.+|...|
T Consensus        67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v  143 (304)
T 2ynn_A           67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV  143 (304)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC---CEEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence            88999999999999999999998887764 5678999999864   48999999999999999987 4557789999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .+++|+|.+..+|++|+.|++|++||++...+...+                                            
T Consensus       144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~--------------------------------------------  179 (304)
T 2ynn_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--------------------------------------------  179 (304)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE--------------------------------------------
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee--------------------------------------------
Confidence            999999965457899999999999998754221111                                            


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                                ..+|...+..++|+|  ++.+|++|+.|++|++||+.+++.    ...+..+..
T Consensus       180 --------------------------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~~h~~  229 (304)
T 2ynn_A          180 --------------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHMS  229 (304)
T ss_dssp             --------------------------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE----EEEEECCSS
T ss_pred             --------------------------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc----ceeeCCCCC
Confidence                                      113445688888886  788999999999999999998653    223344455


Q ss_pred             cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCC--eEEEeecCCcEEEeCCCC
Q 013545          352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ--ELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~--~l~s~s~D~~i~vW~~~~  422 (441)
                      ....++++|++..+++++. +.+++||+.++++..++.+|...+++++|+|+++  ++++|+.|+ +.+|++..
T Consensus       230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            6667889999988888765 6899999999999999999999999999999885  477777555 56776654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7e-41  Score=317.20  Aligned_cols=298  Identities=18%  Similarity=0.307  Sum_probs=236.4

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      .+..+.||.+.|++|+|+|+++++|+|||.||+|+|||+.+.....         ..   ......+|...|.++.|+| 
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---------~~---~~~~l~~h~~~V~~~~~s~-   96 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---------GI---PQRALRGHSHFVSDVVISS-   96 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------EE---EEEEECCCSSCEEEEEECT-
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------ce---eeEEEeCCCCCEEEEEECC-
Confidence            3456889999999999998777899999999999999997654210         00   0123458999999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCCC
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDG  192 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~  192 (441)
                      ++.+|++|+.|+.|++|+............. .......+.+.   ..+|++++.|+.+++||+..... ...+.+|...
T Consensus        97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~  173 (340)
T 4aow_A           97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW  173 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred             CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec---CccceeecCCCeEEEEEeCCCceEEEEeccccCc
Confidence            7899999999999999999988877665543 33444455543   34789999999999999987654 3456789999


Q ss_pred             eEEEEEecCCC-cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          193 IMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       193 v~~v~fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      +.+++|++++. .++++++.|++|++||++++.+...                                           
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-------------------------------------------  210 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-------------------------------------------  210 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-------------------------------------------
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-------------------------------------------
Confidence            99999998754 3678999999999999987644322                                           


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                                  ..+|.++|++|+|+|++++|++|+.|++|++||+.+.+...    ... ...
T Consensus       211 ----------------------------~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~----~~~-~~~  257 (340)
T 4aow_A          211 ----------------------------HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY----TLD-GGD  257 (340)
T ss_dssp             ----------------------------ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE----EEE-CSS
T ss_pred             ----------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee----eec-CCc
Confidence                                        23577889999999999999999999999999999765321    111 234


Q ss_pred             cceEEEeeCCCcEEEEeCCCceEEEEccCCceEeee---------cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF---------RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l---------~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      ....+.+++++.++..+....+++||+.++..+..+         .+|...|++++|+|||++|+||+.|++|+||++.+
T Consensus       258 ~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          258 IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            455677888888877777789999999887766544         47899999999999999999999999999999988


Q ss_pred             CC
Q 013545          423 HI  424 (441)
Q Consensus       423 ~~  424 (441)
                      |.
T Consensus       338 Gt  339 (340)
T 4aow_A          338 GT  339 (340)
T ss_dssp             --
T ss_pred             cC
Confidence            75

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.6e-42  Score=324.75  Aligned_cols=297  Identities=12%  Similarity=0.127  Sum_probs=225.7

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .|...|.+++|+| +|++|++++ |+++|+||........ ...+.....       .....|...|.+++|++ + ..|
T Consensus        28 ~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~-d-~~l   96 (344)
T 4gqb_B           28 CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFC-------SAGVQTEAGVADLTWVG-E-RGI   96 (344)
T ss_dssp             SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGC-------SEEEEESSCEEEEEEET-T-TEE
T ss_pred             cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCccee-------eeeeccCCCEEEEEEeC-C-CeE
Confidence            5778899999997 578888887 8899999843110000 000000000       01124667899999987 4 589


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEe-----cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      ++|+.|++|+|||+.+++.+....     +.+.+.+++|++++   .+|++|+.|+.|++||+++++++..+.+|.+.|.
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg---~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG---TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            999999999999999887544332     45678999999864   4899999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      +++|+|++..+|+|++.|++|++||++++++...+.                                            
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------------------------------------  209 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG--------------------------------------------  209 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------------
T ss_pred             EEEecCCCCCceeeeccccccccccccccceeeeee--------------------------------------------
Confidence            999999988788999999999999998765443321                                            


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                               ...|...+++++|+|+ +.+|++|+.|++|++||+.+++..    ..+..+....
T Consensus       210 -------------------------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~~h~~~v  260 (344)
T 4gqb_B          210 -------------------------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSAVHSQCV  260 (344)
T ss_dssp             -----------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEECCSSCE
T ss_pred             -------------------------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEcCCCCCE
Confidence                                     0123456889999995 568899999999999999987642    2334455666


Q ss_pred             eEEEeeCCCc-EEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCe-EEEeecCCcEEEeCCCCCCC
Q 013545          354 IQLATTQDPA-VVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       354 ~~~~~~~~~~-~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~~~~~  425 (441)
                      ..++++|++. ++++++ ...+++||+.+++++ .+.+|.+.|++|+|+|+++. |+|||.|++|++|++++..+
T Consensus       261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            7889999875 566654 478999999888754 57899999999999999875 66999999999999986543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.6e-41  Score=319.92  Aligned_cols=301  Identities=18%  Similarity=0.288  Sum_probs=230.4

Q ss_pred             eeecCCCC-ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           37 EIVSPHKG-SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        37 ~~~~~H~~-~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ..+.+|.+ .|++|+|+| ++++||||+.|++|+|||+.++...          ..    .....+|...|.++.|+| +
T Consensus         9 ~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~----------~~----~~~~~~h~~~v~~~~~sp-~   72 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWI----------CK----SVLSEGHQRTVRKVAWSP-C   72 (345)
T ss_dssp             EEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEE----------EE----EEECSSCSSCEEEEEECT-T
T ss_pred             eeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcce----------ee----eeeccccCCcEEEEEECC-C
Confidence            34678987 999999997 5789999999999999998654210          00    011248999999999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGH  189 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~h  189 (441)
                      +.+|++|+.|++|++||+..+.  ++..+. +.+.+.++.++|++   .+|++|+.|+.|++||+.++.   ++..+.+|
T Consensus        73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG---NLLATCSRDKSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred             CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC---CEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence            8999999999999999988764  344444 35678999999854   489999999999999998764   45678899


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ...|.+++|+|+++. |++++.|++|++||++.+.....                                         
T Consensus       150 ~~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~-----------------------------------------  187 (345)
T 3fm0_A          150 TQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCC-----------------------------------------  187 (345)
T ss_dssp             CSCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEE-----------------------------------------
T ss_pred             CCCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEE-----------------------------------------
Confidence            999999999999884 78999999999999875421110                                         


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce----------
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT----------  339 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~----------  339 (441)
                                                  ....+|...|++|+|+|+|++|++|+.|++|++||.......          
T Consensus       188 ----------------------------~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          188 ----------------------------ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             ----------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred             ----------------------------EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence                                        012467888999999999999999999999999996432110          


Q ss_pred             -eeeeeeEE-eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc---------eEeeecccccceEEEEEcCCC-CeE
Q 013545          340 -LVNFETVR-LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK---------TCLTFRGHYEYVNCCCFSSQD-QEL  406 (441)
Q Consensus       340 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~---------~~~~l~gh~~~v~~v~fspd~-~~l  406 (441)
                       ........ .+......+++++++..+++++. ..+++|+...+.         ..+.+.+|.+.|++|+|+|++ .+|
T Consensus       240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  319 (345)
T 3fm0_A          240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL  319 (345)
T ss_dssp             EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred             ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence             00011111 13344567888898888877655 789999986643         123457999999999999998 489


Q ss_pred             EEeecCCcEEEeCCCCCCCC
Q 013545          407 YTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       407 ~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ||||.|++|++|+..+.+..
T Consensus       320 aS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          320 ASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             EEEETTSCEEEEEECC----
T ss_pred             EEcCCCCcEEEEEecCCCCc
Confidence            99999999999999877643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.1e-40  Score=309.91  Aligned_cols=289  Identities=22%  Similarity=0.414  Sum_probs=236.3

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++...                 ....+|...|.++.|+| +
T Consensus        16 ~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~h~~~v~~~~~~~-~   76 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE-----------------KTISGHKLGISDVAWSS-D   76 (312)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-T
T ss_pred             EEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccc-----------------hhhccCCCceEEEEEcC-C
Confidence            345679999999999997 5789999999999999998765321                 11347999999999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      +++|++|+.|++|++||+.+++++..+.. .+.+..+.+++..   .+|++|+.|+.|++||+++++.+..+.+|...|.
T Consensus        77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  153 (312)
T 4ery_A           77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS  153 (312)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEE
Confidence            88999999999999999999998887764 4568888888854   4899999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      ++.|+|+++ +|++++.||.|++||++++.++..+.                                            
T Consensus       154 ~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~--------------------------------------------  188 (312)
T 4ery_A          154 AVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLI--------------------------------------------  188 (312)
T ss_dssp             EEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEEC--------------------------------------------
T ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEe--------------------------------------------
Confidence            999999987 57899999999999998765433221                                            


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc--
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK--  352 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~--  352 (441)
                                                ..+..++..++|+|++++|++++.|+.|++||+.+++...    ....+...  
T Consensus       189 --------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~  238 (312)
T 4ery_A          189 --------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK----TYTGHKNEKY  238 (312)
T ss_dssp             --------------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE----EECSSCCSSS
T ss_pred             --------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE----EEEecCCceE
Confidence                                      1233568899999999999999999999999998865321    11111111  


Q ss_pred             ceEEEe-eCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee--cCCcEEEeCCC
Q 013545          353 PIQLAT-TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG--NDRQILVWCPS  421 (441)
Q Consensus       353 ~~~~~~-~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s--~D~~i~vW~~~  421 (441)
                      .....+ .+++..+++++. +.+++||+.+++.+.++.+|.+.|.+++|+|++++|++++  .|++|++|+.+
T Consensus       239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            122233 356667777655 6899999999999999999999999999999999999987  69999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-41  Score=325.02  Aligned_cols=291  Identities=14%  Similarity=0.201  Sum_probs=222.5

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeC------CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGAS------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~  113 (441)
                      ..|.+.|++++|+| +|++|||||.      |++|++|+..++.....      .       .....+|...|.+++|+|
T Consensus        39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~------~-------~~~~~~~~~~V~~~~~s~  104 (357)
T 4g56_B           39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNES------L-------CTAGVQTEAGVTDVAWVS  104 (357)
T ss_dssp             -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGG------G-------CSEEEECSSCEEEEEEET
T ss_pred             ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCccee------E-------ecccCCCCCCEEEEEEcC
Confidence            46999999999997 6889999998      77899998766542110      0       011236888999999987


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEE-----EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMN-----FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (441)
Q Consensus       114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~  188 (441)
                       ++ .+++++.|++|++||+.+++....     ..+.+.+.+++++|++   .+|++|+.|+.|++||+++++.+..+.+
T Consensus       105 -d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~sgs~dg~v~iwd~~~~~~~~~~~~  179 (357)
T 4g56_B          105 -EK-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG---TQAVSGGKDFSVKVWDLSQKAVLKSYNA  179 (357)
T ss_dssp             -TT-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             -CC-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence             44 677889999999999988765322     2245678999999864   4899999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      |...|.+++|+|+++.++++++.|++|++||++++++...+                                       
T Consensus       180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---------------------------------------  220 (357)
T 4g56_B          180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---------------------------------------  220 (357)
T ss_dssp             CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---------------------------------------
T ss_pred             CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---------------------------------------
Confidence            99999999999998767899999999999999865422111                                       


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVR  347 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~  347 (441)
                                                    ....|...+++|+|+|++ .+|++|+.|++|++||+.+++...    ...
T Consensus       221 ------------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~----~~~  266 (357)
T 4g56_B          221 ------------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ----TSA  266 (357)
T ss_dssp             ------------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE----EEC
T ss_pred             ------------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE----EEe
Confidence                                          011245678999999984 688999999999999998875422    223


Q ss_pred             eccCcceEEEeeCCCc-EEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcC-CCCeEEEeecCCcEEEeCCCCC
Q 013545          348 LQTSKPIQLATTQDPA-VVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       348 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      .+......+++++++. ++++++. ..+++||+.+++.+..+ +|.+.|++|+||| |+++|+|||.|++|++|++++.
T Consensus       267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            3445566788998874 5666544 78999999999887665 7999999999999 8999999999999999998653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.6e-41  Score=345.64  Aligned_cols=359  Identities=18%  Similarity=0.263  Sum_probs=248.2

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|.+.|++++|+|++...|+||+.|++|++||..+++..                 ....+|...|.++.|+| ++
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-----------------~~l~~H~~~V~~v~fsp-dg  202 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-----------------STFGEHTKFVHSVRYNP-DG  202 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-----------------EEECCCSSCEEEEEECT-TS
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-----------------eeeccccCceEEEEECC-CC
Confidence            3467999999999999854446999999999999997654210                 12358999999999987 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEe--------cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee----
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK--------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ----  184 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~----  184 (441)
                      .+||||+.|++|++||+.+++++..+.        +.+.+..+.|+|++   .+|++++.|+.|++||+++++.+.    
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~s~s~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG---TKIASASADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC---CEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence            999999999999999999998887763        55678999999864   489999999999999998876443    


Q ss_pred             ---------------------------------------eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce
Q 013545          185 ---------------------------------------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC  225 (441)
Q Consensus       185 ---------------------------------------~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~  225 (441)
                                                             .+.+|...|.+++|+|+++ .|++++.|++|++||++++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE
T ss_pred             CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCce
Confidence                                                   3458999999999999998 578999999999999998776


Q ss_pred             eeEecc-CCcccc-----CCCCcccccccc------cCccCCcCCCCC-CcccCCCCCccccCcccccCCC--CcccccC
Q 013545          226 FRVLDQ-SQSQLG-----RRPPLLKRKSLS------AGQNSSVKPRAP-QKRSANGNGVRQSSVGRIPAKG--SVRQRLH  290 (441)
Q Consensus       226 ~~~~~~-~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  290 (441)
                      ...+.. +...+.     ....+.......      ............ .........+.+++++......  .......
T Consensus       359 ~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~  438 (611)
T 1nr0_A          359 NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS  438 (611)
T ss_dssp             EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred             eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence            554321 111000     000000000000      000000000000 0000000112222222111000  0000000


Q ss_pred             CCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC
Q 013545          291 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM  370 (441)
Q Consensus       291 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (441)
                      .+.    .....|...+.+++|+|||++|++|+.|++|++||+.++...  .... ..+...+..++++|++.++++++.
T Consensus       439 ~~~----~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~--~~~~-~~h~~~v~~v~fspdg~~las~s~  511 (611)
T 1nr0_A          439 HGK----LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS--EVKT-IVHPAEITSVAFSNNGAFLVATDQ  511 (611)
T ss_dssp             TTE----EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE--EEEE-EECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCc----eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee--eeec-cCCCCceEEEEECCCCCEEEEEcC
Confidence            000    011236677999999999999999999999999999865321  1122 334566778999999999988765


Q ss_pred             -CceEEEEccC-CceEee--ecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          371 -TAVKAFDIWS-GKTCLT--FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       371 -~~~~~wd~~~-~~~~~~--l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                       ..+++|++.+ ++....  +.+|...|++|+|||||++|+|||.|++|+||++.++.
T Consensus       512 d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          512 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence             6899999987 665544  45599999999999999999999999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-41  Score=334.11  Aligned_cols=300  Identities=17%  Similarity=0.220  Sum_probs=224.6

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ...+|...|+||+|+|.++++||+|+.||+|+|||+.++...          ..     ....+|.+.|.++.|+|.++.
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------~~-----~~~~gH~~~V~~l~f~p~~~~  178 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------TF-----IKGIGAGGSITGLKFNPLNTN  178 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----------EE-----ECCCSSSCCCCEEEECSSCTT
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----------eE-----EEccCCCCCEEEEEEeCCCCC
Confidence            345799999999999977889999999999999999765421          00     123489999999999987889


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      +|+|||.|++|++||++++.........   ..+.++.++++   ..+|++|+.|+.|++||++. +.+..+.+|...|.
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~  254 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS---SRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVT  254 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT---TTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEE
T ss_pred             EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCC---CCEEEEEeCCCcEeeeccCc-ceeEEEecccceEE
Confidence            9999999999999999876554333322   22455666664   45899999999999999964 56778899999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      +++|+|+++.+|++|+.|++|++||+++......+                                             
T Consensus       255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~---------------------------------------------  289 (435)
T 4e54_B          255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF---------------------------------------------  289 (435)
T ss_dssp             EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC---------------------------------------------
T ss_pred             eeeecCCCceEEEEecCcceeeEEecccccccceE---------------------------------------------
Confidence            99999998888999999999999999864211000                                             


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee--EEeccCc
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET--VRLQTSK  352 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~--~~~~~~~  352 (441)
                                             ....+|..+|++|+|+|+|.+|++++.|++|++||+.+++........  .......
T Consensus       290 -----------------------~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  346 (435)
T 4e54_B          290 -----------------------LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT  346 (435)
T ss_dssp             -----------------------SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred             -----------------------EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence                                   012367889999999999999999999999999999887542211100  0000111


Q ss_pred             ceEEEeeCCCcEEEEeC-----------C--CceEEEEccCCceEeee-cccccceEEE-EEcCCCCeEEEeecCCcEEE
Q 013545          353 PIQLATTQDPAVVFVPC-----------M--TAVKAFDIWSGKTCLTF-RGHYEYVNCC-CFSSQDQELYTGGNDRQILV  417 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~-----------~--~~~~~wd~~~~~~~~~l-~gh~~~v~~v-~fspd~~~l~s~s~D~~i~v  417 (441)
                      +....+.+++..++++.           .  ..+++||+.+++.+..+ .+|...|.++ +|||||++|++|+ |++|+|
T Consensus       347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i  425 (435)
T 4e54_B          347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI  425 (435)
T ss_dssp             CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred             eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence            22333444444443331           1  35999999999988876 4788889887 6999999999886 889999


Q ss_pred             eCCCCCCC
Q 013545          418 WCPSRHIS  425 (441)
Q Consensus       418 W~~~~~~~  425 (441)
                      |++..++.
T Consensus       426 W~~~~gk~  433 (435)
T 4e54_B          426 WSQQEART  433 (435)
T ss_dssp             CCCC----
T ss_pred             EECCcCee
Confidence            99988764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-39  Score=306.16  Aligned_cols=294  Identities=20%  Similarity=0.295  Sum_probs=217.9

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|.+.|++++|+|+   +|+||+.|++|+|||+..+...          .+...   ...+|...|.++.|+| ++
T Consensus         8 ~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~----------~~~~~---~~~~h~~~v~~v~~sp-~~   70 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT----------LIDVL---DETAHKKAIRSVAWRP-HT   70 (330)
T ss_dssp             EEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE----------EEEEE---CTTCCCSCEEEEEECT-TS
T ss_pred             eeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE----------EEEEE---ecCCccCCEEEEEECC-CC
Confidence            456799999999999853   8999999999999999754210          00001   1124999999999987 78


Q ss_pred             CEEEEEeCCCcEEEEECCC-------CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC----ceee
Q 013545          117 GLFVTGSYDHYVKVWDTNC-------TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQ  184 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~----~~~~  184 (441)
                      .+|++|+.|++|++||+..       ..++..+. +.+.+.++.|+|++   .+|++|+.|+.|++||+...    +++.
T Consensus        71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g---~~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG---YYLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS---CEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC---CEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence            8999999999999999853       23444443 34668899999864   48999999999999999432    4567


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc--eeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      .+.+|...|.+++|+|++. +|+||+.|++|++||++.+.  ++.                                   
T Consensus       148 ~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~-----------------------------------  191 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVA-----------------------------------  191 (330)
T ss_dssp             EECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-----------------------------------
T ss_pred             EeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEE-----------------------------------
Confidence            8899999999999999987 58999999999999986531  111                                   


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC--CCEEEEeecCCcEEEeeCCCCCce-
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--GMYLLSAGSDSRIRLWDVESGRNT-  339 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~D~~i~~wd~~~~~~~-  339 (441)
                                                          .+.+|.+.|.+++|+|+  +.+|++|+.|++|++||+.++... 
T Consensus       192 ------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~  235 (330)
T 2hes_X          192 ------------------------------------VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD  235 (330)
T ss_dssp             ------------------------------------EECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred             ------------------------------------EccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence                                                12468889999999999  778999999999999998754210 


Q ss_pred             ---eeeeeeEEe-ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCc--eE-eeeccccc-ceEEEEEcC--CCCeEEEe
Q 013545          340 ---LVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK--TC-LTFRGHYE-YVNCCCFSS--QDQELYTG  409 (441)
Q Consensus       340 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~--~~-~~l~gh~~-~v~~v~fsp--d~~~l~s~  409 (441)
                         ......... +......+++++++.++..+..+.+++|+..+++  .. ..+.+|.. .|++++|+|  ++++|+||
T Consensus       236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~  315 (330)
T 2hes_X          236 QQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG  315 (330)
T ss_dssp             CEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred             cceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence               011111111 3344566778766644444456789999998874  33 33578987 899999999  78999999


Q ss_pred             ecCCcEEEeCCCC
Q 013545          410 GNDRQILVWCPSR  422 (441)
Q Consensus       410 s~D~~i~vW~~~~  422 (441)
                      |.|++|+||++..
T Consensus       316 s~Dg~v~~W~~~~  328 (330)
T 2hes_X          316 GDDGIVNFWSLEK  328 (330)
T ss_dssp             ETTSEEEEEEC--
T ss_pred             cCCCcEEEEEecc
Confidence            9999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7e-40  Score=336.05  Aligned_cols=308  Identities=17%  Similarity=0.232  Sum_probs=238.6

Q ss_pred             cccceecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccc
Q 013545           26 RLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYA  105 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  105 (441)
                      ++..+........+.+|...|++++|+| ++++||||+.||+|+|||+.++...            .   .....+|.+.
T Consensus        42 ~l~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~------------~---~~~~~~~~~~  105 (611)
T 1nr0_A           42 YTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHI------------L---KTTIPVFSGP  105 (611)
T ss_dssp             EEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCC------------E---EEEEECSSSC
T ss_pred             EEecCCCcccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcce------------e---eEeecccCCc
Confidence            3333333334556789999999999997 5889999999999999998654321            0   0123478999


Q ss_pred             eeEEEEeeCCCCEEEEEeCC----CcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          106 ISSAIWYPVDTGLFVTGSYD----HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D----~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                      |.+++|+| ++.+|++++.|    ++|++||.  +..+..+. +.+.+.++.|+|+.  ..+|++|+.|+.|++||.+++
T Consensus       106 v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~--~~~l~s~s~D~~v~lwd~~~~  180 (611)
T 1nr0_A          106 VKDISWDS-ESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSR--PFRIISGSDDNTVAIFEGPPF  180 (611)
T ss_dssp             EEEEEECT-TSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSS--SCEEEEEETTSCEEEEETTTB
T ss_pred             eEEEEECC-CCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCC--CeEEEEEeCCCeEEEEECCCC
Confidence            99999987 78899998876    37888885  34333333 34568899999864  246999999999999999999


Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                      ++..++.+|...|.+++|+|+++ +|+|++.|++|++||++++.+...+....                           
T Consensus       181 ~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~---------------------------  232 (611)
T 1nr0_A          181 KFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDS---------------------------  232 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTT---------------------------
T ss_pred             eEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeecccc---------------------------
Confidence            99999999999999999999997 58999999999999998776544331100                           


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                                           ....+|.+.|.+|+|+|+|++|+|++.|++|++||+.+++...
T Consensus       233 -------------------------------------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~  275 (611)
T 1nr0_A          233 -------------------------------------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  275 (611)
T ss_dssp             -------------------------------------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             -------------------------------------ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence                                                 0012588899999999999999999999999999998875321


Q ss_pred             eeeeeEEec---cCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545          341 VNFETVRLQ---TSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL  416 (441)
Q Consensus       341 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~  416 (441)
                          .....   ......+.+  ++..++++ ..+.+++|+..+++....+.+|...|++++|+|||++|+|++.|++|+
T Consensus       276 ----~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~  349 (611)
T 1nr0_A          276 ----TIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN  349 (611)
T ss_dssp             ----EEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ----eecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence                11111   111222233  44555444 457899999999988899999999999999999999999999999999


Q ss_pred             EeCCCCCCC
Q 013545          417 VWCPSRHIS  425 (441)
Q Consensus       417 vW~~~~~~~  425 (441)
                      +|++.++..
T Consensus       350 ~Wd~~~~~~  358 (611)
T 1nr0_A          350 SWDISTGIS  358 (611)
T ss_dssp             EEETTTCCE
T ss_pred             EEECCCCce
Confidence            999987754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-39  Score=337.40  Aligned_cols=294  Identities=19%  Similarity=0.337  Sum_probs=236.6

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|.+.|++|+|+|+++++|+|||.|++|+|||+.+.....  +       .   ......+|...|.++.+++ ++
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--~-------~---~~~~~~~h~~~v~~v~~s~-~g  442 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--G-------V---AQRRLTGHSHFVEDVVLSS-DG  442 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--C-------E---EEEEEECCSSCEEEEEECT-TS
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--c-------c---ccceecCCCCcEEEEEECC-CC
Confidence            45789999999999998777899999999999999997543210  0       0   0112358999999999987 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee---ecCCCCC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LSGHRDG  192 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~---l~~h~~~  192 (441)
                      .+|+||+.|++|++||+.++..+..+. +.+.+.++.++++.   .+|++|+.|+.|++||+........   ..+|...
T Consensus       443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN---RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW  519 (694)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS---SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred             CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence            999999999999999999998887765 45678999999864   4789999999999999876543322   2579999


Q ss_pred             eEEEEEecCCC-cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          193 IMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       193 v~~v~fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      |.+++|+|++. ..|++++.|++|++||+++.++...                                           
T Consensus       520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-------------------------------------------  556 (694)
T 3dm0_A          520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-------------------------------------------  556 (694)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-------------------------------------------
T ss_pred             EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-------------------------------------------
Confidence            99999999863 3689999999999999986543322                                           


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                                  +.+|.+.|++++|+|++++|++|+.|++|++||+.+++...    ... ...
T Consensus       557 ----------------------------~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~----~~~-~~~  603 (694)
T 3dm0_A          557 ----------------------------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY----SLE-ANS  603 (694)
T ss_dssp             ----------------------------ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE----CCB-CSS
T ss_pred             ----------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE----Eec-CCC
Confidence                                        23577889999999999999999999999999999875321    111 133


Q ss_pred             cceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc-------------------cceEEEEEcCCCCeEEEeecC
Q 013545          352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-------------------EYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~-------------------~~v~~v~fspd~~~l~s~s~D  412 (441)
                      ....+++++++..++.+....+++||+.+++.+..+..|.                   -.+++++|||||++|+||+.|
T Consensus       604 ~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D  683 (694)
T 3dm0_A          604 VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD  683 (694)
T ss_dssp             CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence            4567889999998888888889999999998887765432                   237899999999999999999


Q ss_pred             CcEEEeCCCC
Q 013545          413 RQILVWCPSR  422 (441)
Q Consensus       413 ~~i~vW~~~~  422 (441)
                      ++|+||++..
T Consensus       684 g~i~iW~i~~  693 (694)
T 3dm0_A          684 GVIRVWGIGR  693 (694)
T ss_dssp             SEEEEEEC--
T ss_pred             CeEEEEeccC
Confidence            9999999853

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.7e-39  Score=308.42  Aligned_cols=296  Identities=17%  Similarity=0.207  Sum_probs=227.9

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++|+|++.++|++|+.||+|+|||+.++...            ..   ....+|...|.++.|+|.+
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~---~~~~~h~~~v~~~~~~~~~  130 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT------------SF---IQGMGPGDAITGMKFNQFN  130 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE------------EE---ECCCSTTCBEEEEEEETTE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc------------ee---eecCCcCCceeEEEeCCCC
Confidence            44567999999999999754389999999999999999865421            00   1123799999999998866


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe-cC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~  191 (441)
                      +.+|++++.|++|++||+.... +..+. ..   ..+.++.++++.   .+|++|+.|+.|++||+ +++.+..+.+|..
T Consensus       131 ~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~  205 (383)
T 3ei3_B          131 TNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSR---QMLATGDSTGRLLLLGL-DGHEIFKEKLHKA  205 (383)
T ss_dssp             EEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTT---TEEEEEETTSEEEEEET-TSCEEEEEECSSS
T ss_pred             CCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCC---CEEEEECCCCCEEEEEC-CCCEEEEeccCCC
Confidence            7899999999999999998644 33333 22   558888888854   48999999999999999 5778889999999


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      .|.+++|+|+++++|++++.|++|++||+++.+...                                            
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------------------  241 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--------------------------------------------  241 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT--------------------------------------------
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc--------------------------------------------
Confidence            999999999998678999999999999998531000                                            


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCceeeeeee--EEe
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFET--VRL  348 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~--~~~  348 (441)
                                  .            .....+|.+.|++++|+| ++.+|++++.|++|++||+.+++........  ...
T Consensus       242 ------------~------------~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          242 ------------S------------YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             ------------C------------EEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             ------------c------------eEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence                        0            000125778899999999 9999999999999999999987542211100  000


Q ss_pred             cc-----------CcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecc--cccceEEEEEcCCCCeEEEeecCCc
Q 013545          349 QT-----------SKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRG--HYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       349 ~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~g--h~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                      ..           .....+++++++.+  ++ ..+.+++||+.+++.+.++.+  |...+.+++|+||+++|++|+ |++
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence            01           11222444555554  22 236899999999999999987  567788889999999999997 999


Q ss_pred             EEEeCCCC
Q 013545          415 ILVWCPSR  422 (441)
Q Consensus       415 i~vW~~~~  422 (441)
                      |++|++++
T Consensus       375 i~iw~~~~  382 (383)
T 3ei3_B          375 ILIWNRED  382 (383)
T ss_dssp             EEEEECC-
T ss_pred             EEEEecCC
Confidence            99999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.8e-38  Score=306.66  Aligned_cols=310  Identities=23%  Similarity=0.376  Sum_probs=231.8

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCC-CCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEG-GGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      +|.+.|++++|+| ++++|++|+ |++++||++.++..... ..+.................+...|.++.|+| ++.+|
T Consensus        62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEE
T ss_pred             CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEE
Confidence            6999999999997 578999986 78999999987653210 00000000000000000113444588999987 78999


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      ++|+.|++|++||+.+++.+..+. +.+.+.++.+++++   ..|++++.|+.|++||+++++....+. |...+.+++|
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~  214 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAV  214 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEE
Confidence            999999999999999999887776 45678899998864   478999999999999999998877775 5677999999


Q ss_pred             ec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          199 ST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       199 sp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      +| +++ +|++|+.|++|++||++++.+...+....                                            
T Consensus       215 ~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~--------------------------------------------  249 (393)
T 1erj_A          215 SPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSEN--------------------------------------------  249 (393)
T ss_dssp             CSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------------------
T ss_pred             ECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccc--------------------------------------------
Confidence            99 565 68999999999999998776544331100                                            


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee--------eeeeeEEec
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL--------VNFETVRLQ  349 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~--------~~~~~~~~~  349 (441)
                                          ....+|...|.+|+|+|+|.+|++|+.|++|++||+.+.....        ........+
T Consensus       250 --------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h  309 (393)
T 1erj_A          250 --------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH  309 (393)
T ss_dssp             -----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred             --------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc
Confidence                                0123578899999999999999999999999999998643210        001122233


Q ss_pred             cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcC------CCCeEEEeecCCcEEEeCCCC
Q 013545          350 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS------QDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp------d~~~l~s~s~D~~i~vW~~~~  422 (441)
                      ......+++++++.++++++. +.+++||+.+++.+..+.+|...|.+++|+|      ++++|+|||.|++|+||+...
T Consensus       310 ~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          310 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            455667888899988888765 6899999999999999999999999999986      688999999999999998754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.8e-38  Score=295.80  Aligned_cols=254  Identities=15%  Similarity=0.227  Sum_probs=210.5

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      +.+|.+.|.++.|+| ++++|+||+.|++|++||+.++..+..+.. ...+..+.++++.   .+|++|+.|+.|++||+
T Consensus         9 ~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             EEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG---TEEEEEETTSEEEEEET
T ss_pred             ecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC---CEEEEECCCCEEEEEEC
Confidence            458999999999987 789999999999999999999998887774 4568888888854   48999999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ++++.+..+.+|.+.|.+++|+|+++ +|+||+.|++|++||++++.....                             
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~-----------------------------  134 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQ-----------------------------  134 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEE-----------------------------
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhh-----------------------------
Confidence            99999999999999999999999987 578999999999999875422110                             


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                               ...+|...|++++|+| ++.+|++|+.|++|++||+.+.
T Consensus       135 -----------------------------------------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~  173 (304)
T 2ynn_A          135 -----------------------------------------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS  173 (304)
T ss_dssp             -----------------------------------------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred             -----------------------------------------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence                                                     1235778899999999 6789999999999999999876


Q ss_pred             CceeeeeeeEEeccCcceEEEeeC--CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQ--DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      .....   ....+......+.+.+  ++.++++++. ..+++||+.+++++.++.+|...|.+++|+|++++|+||+.|+
T Consensus       174 ~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg  250 (304)
T 2ynn_A          174 TPNFT---LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (304)
T ss_dssp             SCSEE---EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             Cccce---eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC
Confidence            53221   1111122333455554  5667777654 6899999999999999999999999999999999999999999


Q ss_pred             cEEEeCCCCCCCCCccC
Q 013545          414 QILVWCPSRHISDGVDA  430 (441)
Q Consensus       414 ~i~vW~~~~~~~~~~~~  430 (441)
                      +|++|++.+++......
T Consensus       251 ~i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          251 TLKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             CEEEEETTTCCEEEEEC
T ss_pred             eEEEEECCCCceeeecc
Confidence            99999999887655443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.7e-38  Score=319.85  Aligned_cols=319  Identities=23%  Similarity=0.363  Sum_probs=240.9

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|...|++++|+| ++++|++++.|++|++||.....             +     +...+|...|.+++++| ++
T Consensus       256 ~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~-------------~-----~~~~~h~~~v~~~~~~~-~~  315 (577)
T 2ymu_A          256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQL-------------L-----QTLTGHSSSVWGVAFSP-DG  315 (577)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE-------------E-----EEECCCSSCEEEEEECT-TS
T ss_pred             EEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcE-------------E-----EEEecCCCCeEEEEECC-CC
Confidence            45678999999999996 57899999999999999964211             0     12347999999999987 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      .+|++++.|++|++||...........+...+..++++|++   .+|++++.|+.|++||. +++.+..+.+|...|.++
T Consensus       316 ~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~  391 (577)
T 2ymu_A          316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG---QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV  391 (577)
T ss_dssp             SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC---CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEE
Confidence            89999999999999998766544333345678888888864   47999999999999995 677888999999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      +|+|++++ |++++.|+.|++||.. ++.+..+......+                                ..+.++++
T Consensus       392 ~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v--------------------------------~~~~~s~d  437 (577)
T 2ymu_A          392 AFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSV--------------------------------WGVAFSPD  437 (577)
T ss_dssp             EECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCE--------------------------------EEEEECTT
T ss_pred             EECCCCCE-EEEEeCCCEEEEEeCC-CCEEEEecCCCCCe--------------------------------EEEEECCC
Confidence            99999985 7899999999999954 44444443221111                                01111222


Q ss_pred             ccccCCCCccc--ccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          277 GRIPAKGSVRQ--RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       277 ~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                      ++..+.+..+.  .+............+|...|++++|+||+++|++++.|++|++||.. ++.    ......+...+.
T Consensus       438 ~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~----~~~~~~h~~~v~  512 (577)
T 2ymu_A          438 DQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL----LQTLTGHSSSVR  512 (577)
T ss_dssp             SSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCE----EEEEECCSSCEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCE----EEEEeCCCCCEE
Confidence            21111110000  00000001112346788999999999999999999999999999964 332    223344556677


Q ss_pred             EEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      .++++|++.++++++. +.+++||. +++.+.++.+|.+.|++|+|+|||++|+|+|.|++|++||
T Consensus       513 ~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          513 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            8999999999888765 68999996 7889999999999999999999999999999999999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-37  Score=295.66  Aligned_cols=288  Identities=19%  Similarity=0.243  Sum_probs=240.8

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++...                 ....+|...|.++.|++ ++.
T Consensus        27 ~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~~-~~~   87 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERL-----------------GTLDGHTGTIWSIDVDC-FTK   87 (369)
T ss_dssp             EEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-TSS
T ss_pred             EEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhh-----------------hhhhhcCCcEEEEEEcC-CCC
Confidence            4679999999999997 5789999999999999998765421                 12347999999999987 788


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC-----CcEEEEECCCCc-----------
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGA-----------  181 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-----~~I~vwdl~~~~-----------  181 (441)
                      +|++++.|++|++||+.+++.+..+.....+..+.+++..   .++++++.+     +.|++||+.++.           
T Consensus        88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  164 (369)
T 3zwl_B           88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCG---NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE  164 (369)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS---SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCC---CEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence            9999999999999999999999988888889999998854   478888888     999999998764           


Q ss_pred             eeeeecCCCC--CeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          182 ISQTLSGHRD--GIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       182 ~~~~l~~h~~--~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      ....+..|..  .+.+++|+|+++ .|++++.||.|++||+++ ......                              
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------  213 (369)
T 3zwl_B          165 PIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDS------------------------------  213 (369)
T ss_dssp             CSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEE------------------------------
T ss_pred             eeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEE------------------------------
Confidence            3344556666  899999999987 578999999999999986 222211                              


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                                               ...|...|.+++|+|++.+|++++.|++|++||+.+++.
T Consensus       214 -----------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          214 -----------------------------------------IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             -----------------------------------------EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             -----------------------------------------EecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence                                                     234667899999999999999999999999999998763


Q ss_pred             eeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC---------------ceEEEEccCCceEeeecccccceEEEEEcCCC
Q 013545          339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT---------------AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD  403 (441)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~  403 (441)
                      ..    ... .......+++++++..+++++..               .+++||+.+++.+..+.+|...|.+++|+||+
T Consensus       253 ~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~  327 (369)
T 3zwl_B          253 LK----KYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG  327 (369)
T ss_dssp             EE----EEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             ee----eec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC
Confidence            21    111 34456678889999988876543               69999999999999999999999999999999


Q ss_pred             CeEEEeecCCcEEEeCCCCCC
Q 013545          404 QELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       404 ~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      ++|++++.|++|++|++..+.
T Consensus       328 ~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          328 TSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             SEEEEEETTSEEEEEEECHHH
T ss_pred             CEEEEEcCCCeEEEEECcccc
Confidence            999999999999999998654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.4e-37  Score=290.02  Aligned_cols=261  Identities=17%  Similarity=0.298  Sum_probs=202.0

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-CC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DT  116 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~  116 (441)
                      ++.+|.+.|++++|+| ++++||||+.|++|+|||+......          .     .....+|+..|.++.|+++ ++
T Consensus         4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~----------~-----~~~l~gH~~~V~~v~~s~~~~g   67 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHK----------L-----IDTLTGHEGPVWRVDWAHPKFG   67 (297)
T ss_dssp             ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBC----------C-----CEEECCCSSCEEEEEECCGGGC
T ss_pred             eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcE----------E-----EEEEccccCCeEEEEecCCCcC
Confidence            4679999999999996 5889999999999999998643210          0     0123589999999999764 47


Q ss_pred             CEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce--eeeecCCCC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI--SQTLSGHRD  191 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~--~~~l~~h~~  191 (441)
                      .+|+||+.|++|++||+.++.  .+..+. +...+.++.++|... ..+|++++.|+.|++||++++..  ...+.+|..
T Consensus        68 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~  146 (297)
T 2pm7_B           68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (297)
T ss_dssp             SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred             CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCC-CcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence            899999999999999998764  334443 456788999988632 34799999999999999987642  456789999


Q ss_pred             CeEEEEEecCC------------CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          192 GIMTVEWSTSS------------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       192 ~v~~v~fsp~~------------~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                      .|.+++|+|+.            ..+|++|+.|++|++||++++.....+                              
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~------------------------------  196 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------------------------  196 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE------------------------------
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE------------------------------
Confidence            99999999973            236899999999999998754210000                              


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC---CEEEEeecCCcEEEeeCCCC
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG---MYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                           ...+.+|.+.|.+|+|+|++   .+|+|++.|++|++||+.+.
T Consensus       197 -------------------------------------~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          197 -------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             -------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             -------------------------------------EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                                                 00134688899999999995   89999999999999998764


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL  416 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~  416 (441)
                      .....   . .                                    .....+|...|++++|+|+|++|++++.|++|+
T Consensus       240 ~~~~~---~-~------------------------------------~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~  279 (297)
T 2pm7_B          240 QGPWK---K-T------------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (297)
T ss_dssp             TSCCE---E-E------------------------------------ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred             CCccc---e-e------------------------------------eeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence            31100   0 0                                    001135788899999999999999999999999


Q ss_pred             EeCCCC
Q 013545          417 VWCPSR  422 (441)
Q Consensus       417 vW~~~~  422 (441)
                      ||+...
T Consensus       280 lw~~~~  285 (297)
T 2pm7_B          280 LWKENL  285 (297)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            998763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3e-37  Score=298.88  Aligned_cols=298  Identities=13%  Similarity=0.124  Sum_probs=237.9

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-  114 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-  114 (441)
                      ..++.+|.+.|++|+|+|   ++|++|+.||+|+|||+.+.....      ....+.     ...+|...|.++.|++. 
T Consensus         9 ~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~------~~~~~~-----~~~~h~~~v~~~~~~~~~   74 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN------PKDKSY-----SHFVHKSGLHHVDVLQAI   74 (397)
T ss_dssp             EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC------GGGGEE-----EEECCTTCEEEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc------CCCcce-----EEecCCCcEEEEEEeccc
Confidence            456789999999999986   689999999999999998664211      000111     12379999999999883 


Q ss_pred             --CC---CEEEEEeCCCcEEEEECCCCeE-----EEEEecC------CeeEEEeec----cCCCCccE-EEEEeCCCcEE
Q 013545          115 --DT---GLFVTGSYDHYVKVWDTNCTRV-----VMNFKMP------GKVYRTAMS----PLAASHML-IAAGTEDVQVR  173 (441)
Q Consensus       115 --~~---~~l~sgs~D~~i~iWd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~~~~-las~s~d~~I~  173 (441)
                        ++   .+|++++.|++|++||+.++..     +..+...      +.+.++.++    +.   ..+ |++++.|+.|+
T Consensus        75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~l~~~~~dg~i~  151 (397)
T 1sq9_A           75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL---LSHRLVATDVKGTTY  151 (397)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEE
T ss_pred             ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC---CceEEEEEeCCCcEE
Confidence              27   8999999999999999988775     6666544      778899998    64   346 89999999999


Q ss_pred             EEECCC------Cceee-----ee-------cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcc
Q 013545          174 LCDIAS------GAISQ-----TL-------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ  235 (441)
Q Consensus       174 vwdl~~------~~~~~-----~l-------~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~  235 (441)
                      +||+.+      ++.+.     .+       ..|...|.+++|+|++  +|++++.|+.|++||++++.++..+..    
T Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~----  225 (397)
T 1sq9_A          152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFES----  225 (397)
T ss_dssp             EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEEC----
T ss_pred             EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEec----
Confidence            999998      76666     77       4489999999999998  578999999999999987654433211    


Q ss_pred             ccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee---ccCeEEEEE
Q 013545          236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH---YGAVTGLKV  312 (441)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~  312 (441)
                                                                                      ..+|   ...|.+++|
T Consensus       226 ----------------------------------------------------------------~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          226 ----------------------------------------------------------------QHSMINNSNSIRSVKF  241 (397)
T ss_dssp             ----------------------------------------------------------------CC---CCCCCEEEEEE
T ss_pred             ----------------------------------------------------------------cccccccCCccceEEE
Confidence                                                                            0125   678999999


Q ss_pred             ccCCCEEEEeecC---CcEEEeeCCCCCceeeeeeeEEe-------------ccCcceEEEeeCCCcEEEEeCC-CceEE
Q 013545          313 TEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRL-------------QTSKPIQLATTQDPAVVFVPCM-TAVKA  375 (441)
Q Consensus       313 s~dg~~l~sgs~D---~~i~~wd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~  375 (441)
                      +|++.+|++++.|   +.|++||+.+++...    ....             +......+++++++.++++++. +.+++
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIG----SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEE----EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccc----eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            9999999999999   999999999875321    2222             3455677899999998888765 68999


Q ss_pred             EEccCCceEeeec------cc---------------ccceEEEEEcCCC----------CeEEEeecCCcEEEeCCCCCC
Q 013545          376 FDIWSGKTCLTFR------GH---------------YEYVNCCCFSSQD----------QELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       376 wd~~~~~~~~~l~------gh---------------~~~v~~v~fspd~----------~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      ||+.+++.+.++.      +|               ..+|.+++|+|++          ++|++|+.|+.|++|++.+++
T Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            9999999999999      88               9999999999998          799999999999999987763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.2e-37  Score=291.47  Aligned_cols=326  Identities=13%  Similarity=0.243  Sum_probs=238.8

Q ss_pred             eeecCCCCceeEEEccCC---CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545           37 EIVSPHKGSINSLQVDLT---EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~  113 (441)
                      .+..+|.+.|++++|+|.   +...+++++.++.|+|||+.++....            .........|...|.+++|++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~   79 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR------------LLQSYVDADADENFYTCAWTY   79 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE------------EEEEEECSCTTCCEEEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE------------eeeeccccCCCCcEEEEEecc
Confidence            456799999999999973   34567777777899999997654210            111111124778899999988


Q ss_pred             CC---CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee---
Q 013545          114 VD---TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL---  186 (441)
Q Consensus       114 ~~---~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l---  186 (441)
                      ..   +.+|++|+.|++|++||+.+++.+..+. +.+.+..+.+++.  +..+|++++.|+.|++||+++++.+..+   
T Consensus        80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  157 (366)
T 3k26_A           80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--DPNLLLSVSKDHALRLWNIQTDTLVAIFGGV  157 (366)
T ss_dssp             CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred             CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence            42   5689999999999999999999888887 5677899999883  2358999999999999999999988887   


Q ss_pred             cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      .+|...|.+++|+|+++ .|++++.||.|++||++++.....+.....                                
T Consensus       158 ~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------------------------  204 (366)
T 3k26_A          158 EGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYD--------------------------------  204 (366)
T ss_dssp             TSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHT--------------------------------
T ss_pred             ccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEE--------------------------------
Confidence            78999999999999987 578999999999999987654332221000                                


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee------
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL------  340 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~------  340 (441)
                            ..+.+..........  .   ........+|...|.+++|+  +.+|++++.|++|++||+.+.+...      
T Consensus       205 ------~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  271 (366)
T 3k26_A          205 ------YNPNKTNRPFISQKI--H---FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS  271 (366)
T ss_dssp             ------CCGGGCSSCCCCEEE--C---CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred             ------ecCCCCcccccceee--c---cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC
Confidence                  000000000000000  0   00011123588899999998  7799999999999999998764311      


Q ss_pred             ----eeeeeEEeccCcceEEEeeCC--CcEEEEeCC-CceEEEEccCCc----eEeeeccc--ccceEEEEEcCCCCeEE
Q 013545          341 ----VNFETVRLQTSKPIQLATTQD--PAVVFVPCM-TAVKAFDIWSGK----TCLTFRGH--YEYVNCCCFSSQDQELY  407 (441)
Q Consensus       341 ----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~wd~~~~~----~~~~l~gh--~~~v~~v~fspd~~~l~  407 (441)
                          ........+......++++++  +.++++++. +.+++||+.+++    ....+.+|  ...|++++|+|++++|+
T Consensus       272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  351 (366)
T 3k26_A          272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI  351 (366)
T ss_dssp             CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             CcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEE
Confidence                112223333445556778888  888888765 689999998876    44478888  79999999999999999


Q ss_pred             EeecCCcEEEeCCCC
Q 013545          408 TGGNDRQILVWCPSR  422 (441)
Q Consensus       408 s~s~D~~i~vW~~~~  422 (441)
                      +|+.|+.|++|++.+
T Consensus       352 s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          352 AVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEETTSEEEEEEC--
T ss_pred             EEeCCCEEEEEEecC
Confidence            999999999999853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-37  Score=302.75  Aligned_cols=294  Identities=15%  Similarity=0.228  Sum_probs=220.9

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      ..+|.+.|++++|+|.++++|+||+.||+|+|||+.+.....      ......      ..+|...|.++.|++ ++.+
T Consensus        59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~------~~~h~~~v~~~~~~~-~~~~  125 (437)
T 3gre_A           59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSL------TYDCSSTVTQITMIP-NFDA  125 (437)
T ss_dssp             CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSE------EEECSSCEEEEEECT-TSSE
T ss_pred             ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc------ccceee------eccCCCCEEEEEEeC-CCCE
Confidence            378999999999997357899999999999999986521100      000011      125889999999987 7889


Q ss_pred             EEEEeCCCcEEEEECC---CCeEEEEEecCCeeEEEeecc-------------CCCCccEEEEEeCCCcEEEEECCCCce
Q 013545          119 FVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSP-------------LAASHMLIAAGTEDVQVRLCDIASGAI  182 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~las~s~d~~I~vwdl~~~~~  182 (441)
                      |++|+.|++|++||+.   +++.+...... .+..+.+.+             ...+..+|++|+.|+.|++||+++++.
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence            9999999999999994   55544433322 233333332             123456899999999999999999999


Q ss_pred             eeeecC--CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          183 SQTLSG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       183 ~~~l~~--h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                      +..+.+  |...|.+++|+|+++ +|++|+.||+|++||++++.++..+.                              
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------  253 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWS------------------------------  253 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEB------------------------------
T ss_pred             eEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEe------------------------------
Confidence            999988  899999999999987 57899999999999998765544331                              


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc----cCCCEEEEeecCCcEEEeeCCCC
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT----EDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                              ..|..+|++++|+    |++.+|++|+.|++|++||+.++
T Consensus       254 ----------------------------------------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          254 ----------------------------------------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             ----------------------------------------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             ----------------------------------------cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence                                                    0234568899555    56889999999999999999877


Q ss_pred             CceeeeeeeE-------Ee----------------ccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc---
Q 013545          337 RNTLVNFETV-------RL----------------QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG---  389 (441)
Q Consensus       337 ~~~~~~~~~~-------~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g---  389 (441)
                      +.... +...       .+                +......++++ ++..+++++. +.+++||+.+++....+.+   
T Consensus       294 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  371 (437)
T 3gre_A          294 HCQYA-FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSR  371 (437)
T ss_dssp             EEEEE-EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--
T ss_pred             cEEEE-EEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccc
Confidence            53211 1100       00                12224456677 6667777664 7899999999887777765   


Q ss_pred             ----------------------------------cccceEEEEEcCC--CCeEEEeecCCcEEEeC
Q 013545          390 ----------------------------------HYEYVNCCCFSSQ--DQELYTGGNDRQILVWC  419 (441)
Q Consensus       390 ----------------------------------h~~~v~~v~fspd--~~~l~s~s~D~~i~vW~  419 (441)
                                                        |.+.|++++|+++  +.+|+||+.||+|+||+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          372 FSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                              8999999999998  78999999999999995

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-36  Score=297.24  Aligned_cols=251  Identities=20%  Similarity=0.358  Sum_probs=212.6

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..+|..+|.++.|+| ++.+|+||+.|++|++||+.+++.+..+.. .+.+.++.+++.+   .+|++|+.|+.|++||+
T Consensus       104 l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~---~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG---KLLASCSADMTIKLWDF  179 (410)
T ss_dssp             EECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS---SEEEEEETTSCCCEEET
T ss_pred             ecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC---CEEEEEeCCCeEEEEeC
Confidence            358999999999987 688999999999999999999988877764 5678899998753   48999999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ++++++..+.+|...|.+++|+|+++ .|++|+.|++|++||++++.++..+                            
T Consensus       180 ~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~----------------------------  230 (410)
T 1vyh_C          180 QGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTF----------------------------  230 (410)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEE----------------------------
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEE----------------------------
Confidence            99999999999999999999999987 5789999999999999877554332                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                 .+|...|.+++|+|++.+|++|+.|++|++||+.+++
T Consensus       231 -------------------------------------------~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~  267 (410)
T 1vyh_C          231 -------------------------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE  267 (410)
T ss_dssp             -------------------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             -------------------------------------------eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence                                                       3567789999999999999999999999999998865


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCC--------------------CcEEEEeCC-CceEEEEccCCceEeeecccccceEE
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQD--------------------PAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNC  396 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~  396 (441)
                      ..    .....+......+++.|+                    +.++++++. +.+++||+.+++++.++.+|..+|.+
T Consensus       268 ~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~  343 (410)
T 1vyh_C          268 CK----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  343 (410)
T ss_dssp             EE----EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             ee----eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEE
Confidence            32    122223344555666664                    446666654 68999999999999999999999999


Q ss_pred             EEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          397 CCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       397 v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      ++|+|+|++|+||+.|++|++|+..+++.....
T Consensus       344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            999999999999999999999999877654433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.9e-38  Score=294.85  Aligned_cols=260  Identities=19%  Similarity=0.331  Sum_probs=196.5

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-  114 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-  114 (441)
                      ..++.+|.+.|++++|+| ++++|+||+.|++|+|||+.++...          .+     ....+|...|.++.|+++ 
T Consensus         6 ~~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~----------~~-----~~l~gH~~~V~~v~~~~~~   69 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQI----------LI-----ADLRGHEGPVWQVAWAHPM   69 (316)
T ss_dssp             --------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEE----------EE-----EEEECCSSCEEEEEECCGG
T ss_pred             eeecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcE----------EE-----EEEcCCCccEEEEEeCCCC
Confidence            345679999999999996 5789999999999999998754210          01     123589999999999764 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce---eeeecC
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSG  188 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~---~~~l~~  188 (441)
                      ++.+|+||+.|++|++||++++.  .+..+. +.+.+.++.++|+.. ..+|++|+.|+.|++||++++..   ...+.+
T Consensus        70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~  148 (316)
T 3bg1_A           70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY-GLILACGSSDGAISLLTYTGEGQWEVKKINNA  148 (316)
T ss_dssp             GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTT-CSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred             CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCC-CcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence            57899999999999999998874  344443 456788999998632 35799999999999999987632   456789


Q ss_pred             CCCCeEEEEEecCC----------------CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          189 HRDGIMTVEWSTSS----------------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       189 h~~~v~~v~fsp~~----------------~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      |...|.+++|+|+.                ..+|++|+.|++|++||++..+....+                       
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-----------------------  205 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE-----------------------  205 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE-----------------------
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee-----------------------
Confidence            99999999999973                125799999999999998643211000                       


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC----CEEEEeecCCcE
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSAGSDSRI  328 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~D~~i  328 (441)
                                                                   ..+.+|.++|++++|+|++    .+|++++.|++|
T Consensus       206 ---------------------------------------------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          206 ---------------------------------------------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             ---------------------------------------------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             ---------------------------------------------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence                                                         0124688899999999997    889999999999


Q ss_pred             EEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545          329 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT  408 (441)
Q Consensus       329 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s  408 (441)
                      ++||+.+.....                                         .....+.+|...|++++|+|++++|++
T Consensus       241 ~iw~~~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~v~~sp~g~~las  279 (316)
T 3bg1_A          241 FIWTCDDASSNT-----------------------------------------WSPKLLHKFNDVVWHVSWSITANILAV  279 (316)
T ss_dssp             EEEECSSTTCCC-----------------------------------------CBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred             EEEEccCccccc-----------------------------------------hhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence            999987532100                                         000122457889999999999999999


Q ss_pred             eecCCcEEEeCCC
Q 013545          409 GGNDRQILVWCPS  421 (441)
Q Consensus       409 ~s~D~~i~vW~~~  421 (441)
                      |+.|++|+||+..
T Consensus       280 ~~~D~~v~lw~~~  292 (316)
T 3bg1_A          280 SGGDNKVTLWKES  292 (316)
T ss_dssp             EESSSCEEEEEEC
T ss_pred             EcCCCeEEEEEEC
Confidence            9999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7e-36  Score=303.80  Aligned_cols=320  Identities=22%  Similarity=0.365  Sum_probs=239.5

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|.+.|.+++|+| ++++|++++.|++|++||.....             +     ....+|...|.++.+.| ++
T Consensus       215 ~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~i~~w~~~~~~-------------~-----~~~~~~~~~v~~v~~~~-d~  274 (577)
T 2ymu_A          215 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQL-------------L-----QTLTGHSSSVNGVAFRP-DG  274 (577)
T ss_dssp             EEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCE-------------E-----EEECCCSSCEEEEEECT-TS
T ss_pred             EEEecCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCCE-------------E-----EEEecCCCCEEEEEEcC-CC
Confidence            34678999999999996 57789999999999999964211             0     12347889999999887 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      .++++++.|++|++||.. ++.+..+. +.+.+..++++|+.   ..|++++.|+.|++||+... .+..+.+|...|.+
T Consensus       275 ~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~  349 (577)
T 2ymu_A          275 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG---QTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWG  349 (577)
T ss_dssp             SEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEE
Confidence            899999999999999975 44454444 45678888888854   47899999999999998654 56778899999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      ++|+|+++ .|++++.|+.|++||. ++.++..+......+                                ..+.+++
T Consensus       350 ~~~s~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v--------------------------------~~~~~s~  395 (577)
T 2ymu_A          350 VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSV--------------------------------RGVAFSP  395 (577)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEET-TCCEEEEEECCSSCE--------------------------------EEEEECT
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe--------------------------------EEEEECC
Confidence            99999998 5789999999999995 445544443221110                                0111122


Q ss_pred             cccccCCCCccc--ccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          276 VGRIPAKGSVRQ--RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       276 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                      +++..+.+..+.  .+............+|...|++++|+||+++|++++.|++|++||.....     ......+....
T Consensus       396 dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~-----~~~~~~~~~~v  470 (577)
T 2ymu_A          396 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSSV  470 (577)
T ss_dssp             TSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE-----EEEEECCSSCE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE-----EEEEcCCCCCE
Confidence            222111110000  00000001112346788999999999999999999999999999975421     22333445566


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ..++++|++.++++++. ..+++||. +++.+.++.+|...|++|+|+|||++|+|++.|++|+||+.+
T Consensus       471 ~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          471 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            77899999999888765 68999995 788999999999999999999999999999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.6e-35  Score=277.18  Aligned_cols=284  Identities=18%  Similarity=0.276  Sum_probs=231.4

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+|.+.|++++|+| ++++|++++ ||+|++||+.++.....         +...   ...+|...|.++.++| ++.+|
T Consensus        48 ~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~---------~~~~---~~~~~~~~v~~~~~~~-~~~~l  112 (337)
T 1gxr_A           48 LNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSP---------VSQL---DCLNRDNYIRSCKLLP-DGCTL  112 (337)
T ss_dssp             ECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSC---------SEEE---ECSCTTSBEEEEEECT-TSSEE
T ss_pred             ccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceee---------eecc---cccCCCCcEEEEEEcC-CCCEE
Confidence            48999999999996 578999998 99999999986543210         0000   1126888999999987 78899


Q ss_pred             EEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          120 VTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      ++++.|++|++||+.+++  ....+. +...+..+.+++..   .++++++.|+.|++||+++++.+..+.+|...|.++
T Consensus       113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~  189 (337)
T 1gxr_A          113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  189 (337)
T ss_dssp             EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             EEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEE
Confidence            999999999999999877  333333 34567888888753   478899999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      +|+|+++ .|++++.|+.|++||++++++...+                                               
T Consensus       190 ~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~-----------------------------------------------  221 (337)
T 1gxr_A          190 DISNDGT-KLWTGGLDNTVRSWDLREGRQLQQH-----------------------------------------------  221 (337)
T ss_dssp             EECTTSS-EEEEEETTSEEEEEETTTTEEEEEE-----------------------------------------------
T ss_pred             EECCCCC-EEEEEecCCcEEEEECCCCceEeee-----------------------------------------------
Confidence            9999987 5789999999999999875433221                                               


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                               .|...+.+++|+|++.+|++++.|+.|++||+.+.+..     ....+......+
T Consensus       222 -------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~v~~~  271 (337)
T 1gxr_A          222 -------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-----QLHLHESCVLSL  271 (337)
T ss_dssp             -------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-----EECCCSSCEEEE
T ss_pred             -------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-----EEcCCccceeEE
Confidence                                     23456899999999999999999999999999876531     222334556778


Q ss_pred             EeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          357 ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       357 ~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ++++++..+++++. +.+++|++.+++.+.. ..|...|.+++|+|++++|++++.|+.|++|++
T Consensus       272 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            89999998887765 6899999999988754 458899999999999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=287.12  Aligned_cols=300  Identities=12%  Similarity=0.144  Sum_probs=230.5

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeC---CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEe
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGAS---DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY  112 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  112 (441)
                      ..++.+|.+.|++++|+|++..++++|+.   ||+|+|||+.++...          ..      ...+|...|.++.|+
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------~~------~~~~~~~~v~~~~~~   74 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------LL------REIEKAKPIKCGTFG   74 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------EE------EEEEESSCEEEEECT
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------ce------eeecccCcEEEEEEc
Confidence            34567899999999999865567778887   999999999865421          01      112688899999998


Q ss_pred             eCC--CCEEEEEeCCCcEEEEECCCCe-EEEEEe-cCCeeEEEeecc---CCCCccEEEEEeCCCcEEEEECCCCc-eee
Q 013545          113 PVD--TGLFVTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTAMSP---LAASHMLIAAGTEDVQVRLCDIASGA-ISQ  184 (441)
Q Consensus       113 ~~~--~~~l~sgs~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~~~~---~~~~~~~las~s~d~~I~vwdl~~~~-~~~  184 (441)
                      |..  +.+|++|+.|++|++||+.+++ .+..+. +.+.+..+.+.+   ..++..+|++++.|+.|++||+++++ .+.
T Consensus        75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred             CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence            853  6899999999999999999887 666665 456677776543   23345689999999999999999987 677


Q ss_pred             eecCCCC----CeEEEE----EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          185 TLSGHRD----GIMTVE----WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       185 ~l~~h~~----~v~~v~----fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      .+..|.+    .+.++.    |+|+++ +|++++.||.|++||++++.+..                             
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-----------------------------  204 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRW-----------------------------  204 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEE-----------------------------
T ss_pred             eccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceee-----------------------------
Confidence            7766655    789998    678877 57899999999999998653211                             


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc---CCCEEEEeecCCcEEEeeC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE---DGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~sgs~D~~i~~wd~  333 (441)
                                                                 ...|...|.+++|+|   ++.+|++++.|++|++||+
T Consensus       205 -------------------------------------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          205 -------------------------------------------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             -------------------------------------------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             -------------------------------------------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence                                                       124567799999999   9999999999999999999


Q ss_pred             CCCCceee-eeeeEEeccCcceEEEeeCCCc-EEEEeCC-CceEEEEccCC-------------------ceEeeecccc
Q 013545          334 ESGRNTLV-NFETVRLQTSKPIQLATTQDPA-VVFVPCM-TAVKAFDIWSG-------------------KTCLTFRGHY  391 (441)
Q Consensus       334 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~wd~~~~-------------------~~~~~l~gh~  391 (441)
                      .+++.... .......+......+++++++. ++++++. +.+++||+.++                   +.+.++.+|.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  321 (357)
T 3i2n_A          242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST  321 (357)
T ss_dssp             EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred             cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence            87543211 1112223455667788999987 5666544 68999999754                   3567899999


Q ss_pred             cceEEEEEcCCCCeEE-EeecCCcEEEeCCCCCC
Q 013545          392 EYVNCCCFSSQDQELY-TGGNDRQILVWCPSRHI  424 (441)
Q Consensus       392 ~~v~~v~fspd~~~l~-s~s~D~~i~vW~~~~~~  424 (441)
                      .+|.+++|+|++++|+ |++.|+.|++|++.+..
T Consensus       322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            9999999999999998 89999999999987643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-37  Score=309.80  Aligned_cols=300  Identities=8%  Similarity=0.017  Sum_probs=209.8

Q ss_pred             ecCCCCceeEEEccCC-----CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545           39 VSPHKGSINSLQVDLT-----EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~-----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~  113 (441)
                      +.+|.+.|++++|+|.     ++.+||||+.||+|+|||+.++..... .......+.     ....+|...|.++.|++
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~-~~~~~~~p~-----~~l~~h~~~v~sv~~s~  276 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH-VFKMCEKPS-----LTLSLADSLITTFDFLS  276 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-EEECCCSCS-----EEECCTTTCEEEEEESS
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-cceeecCce-----EEEEcCCCCEEEEEecC
Confidence            4578899999999985     256999999999999999976532100 000000011     12357999999999986


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCe-EEEEEe-cCCeeEEEe--eccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545          114 VDTGLFVTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (441)
Q Consensus       114 ~~~~~l~sgs~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h  189 (441)
                      .  .+|++|+.|++|++||++++. +...+. +.+.+.+++  +++++  ..+||+|+.|++|+|||++++++...+.+|
T Consensus       277 ~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g--~~~laS~S~D~tvklWD~~~~~~~~~~~~~  352 (524)
T 2j04_B          277 P--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE--DTVVSTVAVDGYFYIFNPKDIATTKTTVSR  352 (524)
T ss_dssp             S--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS--CCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred             C--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC--CeEEEEeccCCeEEEEECCCCCcccccccc
Confidence            3  489999999999999998764 333344 456788773  34432  258999999999999999998888888887


Q ss_pred             CC--CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545          190 RD--GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN  267 (441)
Q Consensus       190 ~~--~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (441)
                      ..  .|.+++|+|+++. |++++.|++|++||++++.+...                                       
T Consensus       353 ~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~---------------------------------------  392 (524)
T 2j04_B          353 FRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHP---------------------------------------  392 (524)
T ss_dssp             CSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEE---------------------------------------
T ss_pred             cccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccccee---------------------------------------
Confidence            64  5889999999874 78999999999999986543221                                       


Q ss_pred             CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE-
Q 013545          268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-  346 (441)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~-  346 (441)
                                                      +.+|.+.|++|+|||+|++|+||+.|++|++||+.....  ..+... 
T Consensus       393 --------------------------------l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~--~~~~~~~  438 (524)
T 2j04_B          393 --------------------------------LVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL--HGIKNSS  438 (524)
T ss_dssp             --------------------------------EEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT--TCC----
T ss_pred             --------------------------------eecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc--cccccCc
Confidence                                            246888999999999999999999999999999875321  100000 


Q ss_pred             EeccC-cceEEEeeCCCcEEEEeCCCceEEEEcc-CCceEeeecccccceEEEEEcCCCC---eEEEeecCCcEEEeCCC
Q 013545          347 RLQTS-KPIQLATTQDPAVVFVPCMTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQ---ELYTGGNDRQILVWCPS  421 (441)
Q Consensus       347 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~wd~~-~~~~~~~l~gh~~~v~~v~fspd~~---~l~s~s~D~~i~vW~~~  421 (441)
                      ..... ....+++++++..+...  ...++|... ++..+.++.+|...|++|+|||++.   +||+|+.||+||||++.
T Consensus       439 ~~~~~~~v~~v~~sp~g~~~~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          439 ATQKSLRLWKWDYSIKDDKYRID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             --CCCCEEEECBCCSSSCEEEEC--CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             cceeeeEEEEeccCCCCCeEEcc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence            00111 12356777877644221  222333222 4778889999999999999999954   89999999999999987


Q ss_pred             CCC
Q 013545          422 RHI  424 (441)
Q Consensus       422 ~~~  424 (441)
                      ..+
T Consensus       517 ~~~  519 (524)
T 2j04_B          517 LEH  519 (524)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.3e-36  Score=287.21  Aligned_cols=309  Identities=16%  Similarity=0.194  Sum_probs=232.9

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      +++..|.+.|++++|+| ++++|++|+.|+.|+|||+.++..          ..+     ....+|...|.++.|++ ++
T Consensus         2 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~----------~~~-----~~~~~h~~~v~~~~~~~-~~   64 (372)
T 1k8k_C            2 AYHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKW----------VQV-----HELKEHNGQVTGVDWAP-DS   64 (372)
T ss_dssp             CEEESCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEE----------EEE-----EEEECCSSCEEEEEEET-TT
T ss_pred             ceecccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcE----------Eee-----eeecCCCCcccEEEEeC-CC
Confidence            34567999999999996 578999999999999999875421          001     12247999999999987 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce---e-eeecCC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---S-QTLSGH  189 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~---~-~~l~~h  189 (441)
                      .+|++++.|++|++||+.+++......   +...+.++.+++++   .+|++++.|+.|++||++++..   . ....+|
T Consensus        65 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~  141 (372)
T 1k8k_C           65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  141 (372)
T ss_dssp             TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS---SEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC---CEEEEEeCCCEEEEEEecCCCcceeeeeeeccc
Confidence            999999999999999998887655443   45668888888854   4899999999999999998763   2 334679


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ...|.+++|+|+++ +|++++.||.|++||++....-..           . .               ......      
T Consensus       142 ~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~-----------~-~---------------~~~~~~------  187 (372)
T 1k8k_C          142 RSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEER-----------P-A---------------PTPWGS------  187 (372)
T ss_dssp             CSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCC-----------C-C---------------CBTTBS------
T ss_pred             CCCeeEEEEcCCCC-EEEEEcCCCCEEEEEccccccccc-----------c-c---------------cccccc------
Confidence            99999999999987 578999999999999864310000           0 0               000000      


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  349 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~  349 (441)
                              +. ..+           .......+|.+.|.+++|+|++.+|++++.|++|++||+.+++..    .....+
T Consensus       188 --------~~-~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~  243 (372)
T 1k8k_C          188 --------KM-PFG-----------ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV----ATLASE  243 (372)
T ss_dssp             --------CC-CTT-----------CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE----EEEECS
T ss_pred             --------cc-chh-----------hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee----EEEccC
Confidence                    00 000           000112367888999999999999999999999999999887632    222334


Q ss_pred             cCcceEEEeeCCCcEEEEeCCCceEEEEccC--Cc--------------------------------eE------eee-c
Q 013545          350 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWS--GK--------------------------------TC------LTF-R  388 (441)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~--~~--------------------------------~~------~~l-~  388 (441)
                      ......+++++++.+++++..+.+++|++.+  ++                                ..      ..+ .
T Consensus       244 ~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (372)
T 1k8k_C          244 TLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS  323 (372)
T ss_dssp             SCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred             CCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence            4456778899999998888778999999987  42                                10      333 4


Q ss_pred             ccccceEEEEEc-CCC---CeEEEeecCCcEEEeCCCCC
Q 013545          389 GHYEYVNCCCFS-SQD---QELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       389 gh~~~v~~v~fs-pd~---~~l~s~s~D~~i~vW~~~~~  423 (441)
                      +|.++|++++|+ ++|   ++|+||+.|++|++|++.+.
T Consensus       324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          324 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence            999999999966 666   89999999999999998653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.4e-36  Score=291.67  Aligned_cols=300  Identities=9%  Similarity=0.082  Sum_probs=217.2

Q ss_pred             CceeEEEccCCCCcEEEEeeCCC-------cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           44 GSINSLQVDLTEERYLLSGASDS-------SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      -+|++++|+| ++++|++|+.|.       +|+||++.......       ...........+.+|...|.++.+.   +
T Consensus        15 ~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~-------~~~~~~~~~~~l~~~~~~v~s~~~~---~   83 (365)
T 4h5i_A           15 YPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE-------KEQFHILSEFALEDNDDSPTAIDAS---K   83 (365)
T ss_dssp             SCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSH-------HHHEEEEEEEECCTTSCCCCEEEEE---T
T ss_pred             CCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcce-------eeeeeeeeEEEccCCCCceEEEEeC---C
Confidence            4799999996 688999998755       49999987554211       0011111112245788888877653   4


Q ss_pred             CEEEEE-----------eCCCcEEEEECCCCeE-E---EEEec------CCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545          117 GLFVTG-----------SYDHYVKVWDTNCTRV-V---MNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus       117 ~~l~sg-----------s~D~~i~iWd~~~~~~-~---~~~~~------~~~~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      +.+++|           +.|+++|+|++..... +   .....      ...+..++|+|++. ...+|+++.|+.|+||
T Consensus        84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iw  162 (365)
T 4h5i_A           84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRII  162 (365)
T ss_dssp             TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEE
T ss_pred             CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEe
Confidence            556554           4578899998765432 1   11111      12366788998753 1234566689999999


Q ss_pred             ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                      |+++++.+..+. |...|.+++|+|+++ ++++++ ++.+++|+..++.+....                          
T Consensus       163 d~~~~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~--------------------------  213 (365)
T 4h5i_A          163 DPSDLTEKFEIE-TRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARK--------------------------  213 (365)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEE--------------------------
T ss_pred             ECCCCcEEEEeC-CCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeee--------------------------
Confidence            999999888875 778899999999998 467776 556777776654332110                          


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC----cEEEe
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS----RIRLW  331 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~----~i~~w  331 (441)
                                                                 ....|...|.+++|+|++.++++++.|+    ++++|
T Consensus       214 -------------------------------------------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          214 -------------------------------------------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             -------------------------------------------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             -------------------------------------------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence                                                       0124566799999999999999999988    68889


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEee-ecccccceEEEEEcCCCCeEEEe
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~-l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      ++...............+......++++|++.++++++. ..+++||+.+++++.+ +.+|..+|++|+|||||++||||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            987654333222233334455678899999999998866 6899999999999887 58999999999999999999999


Q ss_pred             ecCCcEEEeCCCCCCCCC
Q 013545          410 GNDRQILVWCPSRHISDG  427 (441)
Q Consensus       410 s~D~~i~vW~~~~~~~~~  427 (441)
                      |.|++||||+++.+....
T Consensus       331 S~D~tvrvw~ip~~~~~~  348 (365)
T 4h5i_A          331 SAANTIHIIKLPLNYANY  348 (365)
T ss_dssp             ETTSEEEEEECCTTTTC-
T ss_pred             eCCCeEEEEEcCCCCcCc
Confidence            999999999998776543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=285.01  Aligned_cols=251  Identities=22%  Similarity=0.333  Sum_probs=208.9

Q ss_pred             ccCcccceeEEEEeeC---CCCEEEEEeCCCcEEEEECCCCeEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcE
Q 013545           99 EHGHKYAISSAIWYPV---DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQV  172 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~---~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I  172 (441)
                      ..+|.++|.+++|++.   ++.+|+|||.|++|++||+.++.......+   ...+.++.+++..   .++++++.|+.|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~---~~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL---PIAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS---SEEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC---CEEEEEeCCCcE
Confidence            3589999999999863   467999999999999999987775444333   3457888887753   489999999999


Q ss_pred             EEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       173 ~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      ++||+++++.+..+.+|...+.+++|+|+++ .|++++.|+.|++||+++++....+                       
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~-----------------------  160 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSL-----------------------  160 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEE-----------------------
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEe-----------------------
Confidence            9999999999999999999999999999998 5789999999999999865432221                       


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  332 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd  332 (441)
                                                                      ..|...|.+++|+|++++|++|+.|++|++||
T Consensus       161 ------------------------------------------------~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd  192 (321)
T 3ow8_A          161 ------------------------------------------------DTRGKFILSIAYSPDGKYLASGAIDGIINIFD  192 (321)
T ss_dssp             ------------------------------------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ------------------------------------------------cCCCceEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence                                                            23445689999999999999999999999999


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                      +.+++..    .....+......++++|++.++++++. +.+++||+.+++...++.+|...|.+++|+|++++|+||+.
T Consensus       193 ~~~~~~~----~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          193 IATGKLL----HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             TTTTEEE----EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCcEE----EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            9987532    223334456678899999999888866 68999999999999999999999999999999999999999


Q ss_pred             CCcEEEeCCCCCCCCCc
Q 013545          412 DRQILVWCPSRHISDGV  428 (441)
Q Consensus       412 D~~i~vW~~~~~~~~~~  428 (441)
                      |++|+||++.++.....
T Consensus       269 D~~v~iwd~~~~~~~~~  285 (321)
T 3ow8_A          269 DKSVKVWDVGTRTCVHT  285 (321)
T ss_dssp             TSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEeCCCCEEEEE
Confidence            99999999987764433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.3e-37  Score=294.35  Aligned_cols=309  Identities=15%  Similarity=0.159  Sum_probs=220.0

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      +++..|.+.|++++|+| ++++|++|+.|++|+|||+.++...               ......+|...|.++.|+| ++
T Consensus         5 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~---------------~~~~~~~h~~~v~~~~~s~-~~   67 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWK---------------HARTFSDHDKIVTCVDWAP-KS   67 (377)
T ss_dssp             EEEEECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEE---------------ECCCBCCCSSCEEEEEECT-TT
T ss_pred             eeEecCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceE---------------EEEEEecCCceEEEEEEeC-CC
Confidence            34556778999999997 6789999999999999998754200               0123458999999999987 68


Q ss_pred             CEEEEEeCCCcEEEEECCCCe---EEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecC-
Q 013545          117 GLFVTGSYDHYVKVWDTNCTR---VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSG-  188 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~-  188 (441)
                      ++|++|+.|++|++||+.++.   ....+ .+.+.+.++.+++++   .+|++++.|+.|++||+++++   ....+.+ 
T Consensus        68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE---DKFAVGSGARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS---SCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred             CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC---CEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence            899999999999999998876   33332 356678889998854   478899999999999999887   4677887 


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      |...|.+++|+|+++ +|++++.|++|++||++..........  .                               ..+
T Consensus       145 h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~--~-------------------------------~~~  190 (377)
T 3dwl_C          145 LRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEA--S-------------------------------VWG  190 (377)
T ss_dssp             CCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCS--C-------------------------------SSC
T ss_pred             cCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccc--c-------------------------------ccc
Confidence            999999999999987 579999999999999875321000000  0                               000


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  348 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~  348 (441)
                      .                  ....+  ...... +|.+.|++++|+|++++|++++.|++|++||+.+++...........
T Consensus       191 ~------------------~~~~~--~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  249 (377)
T 3dwl_C          191 S------------------RLPFN--TVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL  249 (377)
T ss_dssp             S------------------CCCEE--EEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC
T ss_pred             c------------------ccchh--hhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC
Confidence            0                  00000  000112 68889999999999999999999999999999987642221233344


Q ss_pred             ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCc--e----------------------------E------e-------
Q 013545          349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK--T----------------------------C------L-------  385 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~--~----------------------------~------~-------  385 (441)
                      +......+++++++.+++++....+.+|+.....  .                            +      .       
T Consensus       250 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (377)
T 3dwl_C          250 SQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDL  329 (377)
T ss_dssp             SSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------------
T ss_pred             CCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhh
Confidence            4556678899999999988888888888765211  0                            0      0       


Q ss_pred             ---------eecccccceEEEEEcCCCC----eEEEeecCCcEEEeCC
Q 013545          386 ---------TFRGHYEYVNCCCFSSQDQ----ELYTGGNDRQILVWCP  420 (441)
Q Consensus       386 ---------~l~gh~~~v~~v~fspd~~----~l~s~s~D~~i~vW~~  420 (441)
                               ...+|.+.|+++++.+++.    .|+|||.||.|+||++
T Consensus       330 ~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          330 KGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                     1123999999999776543    5999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-36  Score=296.92  Aligned_cols=294  Identities=14%  Similarity=0.191  Sum_probs=232.4

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+|...|++++|+| ++++|++|+.||+|++||+.+....        ...+     ....+|...|.++.|+|.++.+|
T Consensus        64 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~--------~~~~-----~~~~~h~~~v~~~~~~~~~~~~l  129 (416)
T 2pm9_A           64 LQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNA--------INSM-----ARFSNHSSSVKTVKFNAKQDNVL  129 (416)
T ss_dssp             CCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSC--------CCEE-----EECCCSSSCCCEEEECSSSTTBE
T ss_pred             EecCCceEEEEECC-CCCeEEEEccCCeEEEeeccccccc--------ccch-----hhccCCccceEEEEEcCCCCCEE
Confidence            36899999999997 5779999999999999999763210        0011     12347999999999998558899


Q ss_pred             EEEeCCCcEEEEECCCCe------EEEEE----ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545          120 VTGSYDHYVKVWDTNCTR------VVMNF----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h  189 (441)
                      ++++.|++|++||+.++.      .....    .+.+.+.++.+++..  ..+|++++.|+.|++||+++++.+..+..|
T Consensus       130 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  207 (416)
T 2pm9_A          130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--AHVFASAGSSNFASIWDLKAKKEVIHLSYT  207 (416)
T ss_dssp             EEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC--TTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred             EEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC--CcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence            999999999999998876      32222    234567888888752  358999999999999999999988888776


Q ss_pred             ------CCCeEEEEEecCCCcEEEEeecCC---cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          190 ------RDGIMTVEWSTSSEWILVTGGCDG---AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       190 ------~~~v~~v~fsp~~~~~l~s~s~Dg---~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                            ...|.+++|+|++..++++++.|+   .|++||++++...                                  
T Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------------------------------  253 (416)
T 2pm9_A          208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------------------------------  253 (416)
T ss_dssp             CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------------------------------
T ss_pred             ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------------------------------
Confidence                  789999999999866789999999   9999999753100                                  


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccce-eeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCc
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT-AHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                                          ..... +|...|++++|+| ++.+|++++.|++|++||+.+++.
T Consensus       254 ------------------------------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~  297 (416)
T 2pm9_A          254 ------------------------------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ  297 (416)
T ss_dssp             ------------------------------------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE
T ss_pred             ------------------------------------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc
Confidence                                                00012 5778899999999 999999999999999999998753


Q ss_pred             eeeeeeeEEeccCcceEEEeeCCC-cEEEEeCC-CceEEEEccCCceEeeec----------------------------
Q 013545          339 TLVNFETVRLQTSKPIQLATTQDP-AVVFVPCM-TAVKAFDIWSGKTCLTFR----------------------------  388 (441)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~wd~~~~~~~~~l~----------------------------  388 (441)
                      .    .....+......+++++++ .++++++. +.+++|++.+++......                            
T Consensus       298 ~----~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (416)
T 2pm9_A          298 L----SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSV  373 (416)
T ss_dssp             E----EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCS
T ss_pred             c----eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccc
Confidence            2    2333445566788999998 67777665 689999997765433221                            


Q ss_pred             -------ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          389 -------GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       389 -------gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                             .|..++.+++|+|||++|++++.|++|+||++.+.
T Consensus       374 ~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          374 FHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                   27788999999999999999999999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=288.87  Aligned_cols=279  Identities=13%  Similarity=0.207  Sum_probs=230.6

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      |.+.|++++|+| ++++|++|+.||.|++||.. +..            +     ....+|...|.++.|+| ++.+|++
T Consensus       107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~~-~~~------------~-----~~~~~~~~~v~~~~~~~-~~~~l~~  166 (425)
T 1r5m_A          107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWNKT-GAL------------L-----NVLNFHRAPIVSVKWNK-DGTHIIS  166 (425)
T ss_dssp             -CBCEEEEEECT-TSSEEEEEETTSCEEEEETT-SCE------------E-----EEECCCCSCEEEEEECT-TSSEEEE
T ss_pred             CCCceEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCe------------e-----eeccCCCccEEEEEECC-CCCEEEE
Confidence            678999999997 67899999999999999932 211            1     11247889999999987 7889999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCe----------------eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          122 GSYDHYVKVWDTNCTRVVMNFKMPGK----------------VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                      ++.|+.|++||+.+++.+..+.....                +..+.+++.    ..+++++.|+.|++||+++++.+..
T Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~i~~~d~~~~~~~~~  242 (425)
T 1r5m_A          167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD----DKFVIPGPKGAIFVYQITEKTPTGK  242 (425)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET----TEEEEECGGGCEEEEETTCSSCSEE
T ss_pred             EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC----CEEEEEcCCCeEEEEEcCCCceeee
Confidence            99999999999999998887765432                555666653    3588889999999999999999999


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      +.+|...|.+++|+|+++ +|++++.|+.|++||++++.+...                                     
T Consensus       243 ~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~-------------------------------------  284 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNC-------------------------------------  284 (425)
T ss_dssp             ECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBSCSEE-------------------------------------
T ss_pred             eccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCccceE-------------------------------------
Confidence            999999999999999987 578999999999999876432221                                     


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  345 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~  345 (441)
                                                        ...|...|.+++|+|++ +|++++.|++|++||+.+++..    ..
T Consensus       285 ----------------------------------~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~----~~  325 (425)
T 1r5m_A          285 ----------------------------------FYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL----AL  325 (425)
T ss_dssp             ----------------------------------ECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE----EE
T ss_pred             ----------------------------------ecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe----Ee
Confidence                                              12466789999999999 9999999999999999876532    22


Q ss_pred             EEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc--------------------eEeeeccccc--ceEEEEEcCC
Q 013545          346 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK--------------------TCLTFRGHYE--YVNCCCFSSQ  402 (441)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~--------------------~~~~l~gh~~--~v~~v~fspd  402 (441)
                      ...+......+++++++..+++++. +.+++||+.+++                    .+..+.+|..  .|.+++|+|+
T Consensus       326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  405 (425)
T 1r5m_A          326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA  405 (425)
T ss_dssp             EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred             cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence            2334456667889999998888765 689999998888                    8899999977  9999999999


Q ss_pred             CCeEEEeecCCcEEEeCCC
Q 013545          403 DQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       403 ~~~l~s~s~D~~i~vW~~~  421 (441)
                      +++|++++.|+.|++|+++
T Consensus       406 ~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          406 GNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             SSEEEEEESSSCCEEEECC
T ss_pred             CceEEEEecCceEEEEeec
Confidence            9999999999999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-35  Score=327.43  Aligned_cols=368  Identities=19%  Similarity=0.285  Sum_probs=260.6

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++...                 ....+|...|.++.|+| ++
T Consensus       609 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~-----------------~~~~~h~~~v~~~~~s~-~~  669 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKL-----------------LDIKAHEDEVLCCAFSS-DD  669 (1249)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-TS
T ss_pred             EEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEE-----------------EEeccCCCCEEEEEEec-CC
Confidence            35679999999999996 5889999999999999999876421                 12347999999999987 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      .+|++|+.|++|++||+.+++++..+.. .+.+.++.+++... ..++++|+.|+.|++||+++++++..+.+|.+.|.+
T Consensus       670 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN-HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-CCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCC-ceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence            8999999999999999999998888764 56788888888543 458999999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCC------cccccccccCc-------cCC---cCCC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPP------LLKRKSLSAGQ-------NSS---VKPR  259 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------~~~---~~~~  259 (441)
                      ++|+|+++ .|++++.||+|++||++++.+...+...........+      ...........       ...   ....
T Consensus       749 ~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~  827 (1249)
T 3sfz_A          749 CRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH  827 (1249)
T ss_dssp             EEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred             EEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence            99999988 5799999999999999988776655322110000000      00000000000       000   0000


Q ss_pred             CC-------CcccCCCCCccccCcccccCCCCccccc--C-CCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545          260 AP-------QKRSANGNGVRQSSVGRIPAKGSVRQRL--H-PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR  329 (441)
Q Consensus       260 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  329 (441)
                      ..       .........+.+++.+...+.+..+..+  . ...........+|.+.|++++|+|+|.+|++++.|++|+
T Consensus       828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~  907 (1249)
T 3sfz_A          828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR  907 (1249)
T ss_dssp             TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE
Confidence            00       0001111223334443332221111110  0 000011123457899999999999999999999999999


Q ss_pred             EeeCCCCCce----ee-ee----------------------------eeEEeccCcceEEEeeCCCcEEEEeCC-CceEE
Q 013545          330 LWDVESGRNT----LV-NF----------------------------ETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKA  375 (441)
Q Consensus       330 ~wd~~~~~~~----~~-~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  375 (441)
                      +||+.+....    .. ..                            ............+++++++..+++++. +.+++
T Consensus       908 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i  987 (1249)
T 3sfz_A          908 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI  987 (1249)
T ss_dssp             EEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEE
T ss_pred             EEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEE
Confidence            9997532100    00 00                            000011233456788999998888755 68999


Q ss_pred             EEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          376 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       376 wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      |++.+++....+.+|...|.+++|+|||++|++++.|++|++|++.++..
T Consensus       988 ~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A          988 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp             EETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred             EEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence            99999999999999999999999999999999999999999999987653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.5e-36  Score=282.76  Aligned_cols=302  Identities=15%  Similarity=0.220  Sum_probs=215.8

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-  114 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-  114 (441)
                      ..++.+|.+.|++++|+| ++++|++|+.||+|+|||+.++....         ..    .....+|...|.++.|++. 
T Consensus         4 ~~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~----~~~~~~~~~~v~~~~~~~~~   69 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNW---------EL----SDSWRAHDSSIVAIDWASPE   69 (351)
T ss_dssp             CCEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCE---------EE----EEEEECCSSCEEEEEECCGG
T ss_pred             cccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcc---------ee----cceeccCCCcEEEEEEcCCC
Confidence            456789999999999997 57899999999999999997653210         00    1123479999999999886 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCC---------eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCT---------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      ++.+|++|+.|++|++||+.++         +.+..+. +.+.+..+.+++... ..+|++++.|+.|++||+++++.+.
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCC-CcEEEEecCCCcEEEecCCChHHhc
Confidence            5889999999999999999876         4444444 456788899888621 3478999999999999999887654


Q ss_pred             eec-------------CCCCCeEEEEEecC---CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545          185 TLS-------------GHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL  248 (441)
Q Consensus       185 ~l~-------------~h~~~v~~v~fsp~---~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (441)
                      .+.             +|...+.+++|+|+   +. ++++++.|+.+.+|+...+.....                    
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~--------------------  207 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVA--------------------  207 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEE--------------------
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeee--------------------
Confidence            433             78899999999997   55 678999999998887654321100                    


Q ss_pred             ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC----CEEEEeec
Q 013545          249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSAGS  324 (441)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~  324 (441)
                                                                       ....+|...|++++|+|++    .+|++|+.
T Consensus       208 -------------------------------------------------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          208 -------------------------------------------------AKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             -------------------------------------------------EECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             -------------------------------------------------eecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence                                                             0123577889999999998    89999999


Q ss_pred             CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe-----CCCceEEEEccCCceEeeecccccceEEEEE
Q 013545          325 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-----CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       325 D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      |++|++||+.++.........    ..........+........     ......+|+..+.+.+..+.+|...|++++|
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  314 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEES----LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW  314 (351)
T ss_dssp             TSCEEEEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred             CCeEEEEeCCCCcCccccCCc----ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence            999999999875432111000    0000011111111111111     1123445555556778889999999999999


Q ss_pred             cCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          400 SSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       400 spd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      +|++++|+||+.|+.|++|+++++...
T Consensus       315 s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          315 NLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             CSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             cCCCCEEEEecCCCcEEEEecCcCcch
Confidence            999999999999999999999887654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.1e-35  Score=272.45  Aligned_cols=281  Identities=18%  Similarity=0.238  Sum_probs=219.0

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      .+++|+||+ ++ +|++| .|++|+|||+.+++..          ..+     ...+|...|.++.+++ ++++||||+.
T Consensus        27 y~~~l~WS~-~~-~lAvg-~D~tV~iWd~~tg~~~----------~~~-----~~~~~~~~V~~v~~~~-~~~~l~sgs~   87 (318)
T 4ggc_A           27 YLNLVDWSS-GN-VLAVA-LDNSVYLWSASSGDIL----------QLL-----QMEQPGEYISSVAWIK-EGNYLAVGTS   87 (318)
T ss_dssp             TCBCEEECT-TS-EEEEE-ETTEEEEEETTTCCEE----------EEE-----ECCSTTCCEEEEEECT-TSSEEEEEET
T ss_pred             cceEEEECC-CC-EEEEE-eCCEEEEEECCCCCEE----------EEE-----EecCCCCeEEEEEECC-CCCEEEEEEC
Confidence            468899995 33 66655 6999999999876531          011     1247888999999987 7889999999


Q ss_pred             CCcEEEEECCCCeEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEecCC
Q 013545          125 DHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      |++|++||+++++++..+..+. .+..  +.+.   ..++++++.++.+++|+..++. .+..+.+|...+..+.|++++
T Consensus        88 Dg~v~iw~~~~~~~~~~~~~h~~~~~~--~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLRNMTSHSARVGS--LSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEE--EEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCcEEEeecCCceeEEEecCccceEEE--eecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence            9999999999999988776543 3333  3332   3479999999999999998764 457788999999999999998


Q ss_pred             CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      + .|++++.|++|++||+++++.....                                                     
T Consensus       163 ~-~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------------------------------------  188 (318)
T 4ggc_A          163 R-HLASGGNDNLVNVWPSAPGEGGWVP-----------------------------------------------------  188 (318)
T ss_dssp             S-EEEEEETTSCEEEEESSCBTTBSCC-----------------------------------------------------
T ss_pred             C-EEEEEecCcceeEEECCCCcccccc-----------------------------------------------------
Confidence            7 5789999999999999864311000                                                     


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCE---EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY---LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~---l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                    ......|.+.|.+++++|++..   +++++.|++|++||........     ............+.
T Consensus       189 --------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----~~~~~~~v~~~~~~  249 (318)
T 4ggc_A          189 --------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----AVDAHSQVCSILWS  249 (318)
T ss_dssp             --------------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----EEECSSCEEEEEEE
T ss_pred             --------------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----cccceeeeeeeeec
Confidence                          0011245677999999998764   3577889999999998765321     12234455667788


Q ss_pred             CCCcEEEEeC---CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          360 QDPAVVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       360 ~~~~~~~~~~---~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      +++..+++++   .+.+++||+.+++++.+|.||.++|++|+|+|||++|+|||.|++|+||++..
T Consensus       250 ~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            8888776653   36899999999999999999999999999999999999999999999999854

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.7e-35  Score=284.26  Aligned_cols=282  Identities=18%  Similarity=0.252  Sum_probs=221.7

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      .++.|+||+ + ++|+.| .|++|+|||+.++...          .++     ...+|...|.+++|+| ++.+||+|+.
T Consensus       107 y~~~l~wS~-~-n~lAvg-ld~tV~lWd~~tg~~~----------~~~-----~~~~~~~~V~sv~fsp-dg~~lasgs~  167 (420)
T 4gga_A          107 YLNLVDWSS-G-NVLAVA-LDNSVYLWSASSGDIL----------QLL-----QMEQPGEYISSVAWIK-EGNYLAVGTS  167 (420)
T ss_dssp             TCBCEEECT-T-SEEEEE-ETTEEEEEETTTCCEE----------EEE-----ECCSTTCCEEEEEECT-TSSEEEEEET
T ss_pred             cceeEEECC-C-CEEEEE-eCCEEEEEECCCCCEE----------EEE-----EecCCCCcEEEEEECC-CCCEEEEEEC
Confidence            567899984 3 466665 5999999999876531          111     1247888999999987 7899999999


Q ss_pred             CCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEecCC
Q 013545          125 DHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      |++|++||+.+++++..+..+ ..+.++.+.     ..+|++|+.|+.+++||..... .+..+.+|...+..+.|+|++
T Consensus       168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~-----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g  242 (420)
T 4gga_A          168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  242 (420)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCeEEEEEcCCCcEEEEEeCCCCceEEEeeC-----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence            999999999999998877643 445544443     3489999999999999998754 567889999999999999999


Q ss_pred             CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      + .+++++.|+.|++||++.+.....                                                      
T Consensus       243 ~-~l~s~~~D~~v~i~~~~~~~~~~~------------------------------------------------------  267 (420)
T 4gga_A          243 R-HLASGGNDNLVNVWPSAPGEGGWV------------------------------------------------------  267 (420)
T ss_dssp             S-EEEEEETTSCEEEEESSCCSSCSC------------------------------------------------------
T ss_pred             C-eeeeeeccccceEEeeccccccce------------------------------------------------------
Confidence            8 578999999999999875421000                                                      


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEE--eecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLS--AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s--gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                   .......|.+.|.+++|+|++.. +++  |+.|++|++||+.+++...    . .........+.+.
T Consensus       268 -------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~----~-~~~~~~v~~~~~~  329 (420)
T 4gga_A          268 -------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS----A-VDAHSQVCSILWS  329 (420)
T ss_dssp             -------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE----E-EECSSCEEEEEEE
T ss_pred             -------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce----e-eccccceeeeeec
Confidence                         00012356788999999998654 443  5689999999999876321    1 1224556678888


Q ss_pred             CCCcEEEEeC---CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          360 QDPAVVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       360 ~~~~~~~~~~---~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      +++..+++++   .+.+++||+.+++.+.+|.||.+.|++|+|+|||++|+|||.|++||||++...
T Consensus       330 ~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             CCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9888877754   368999999999999999999999999999999999999999999999998643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=269.95  Aligned_cols=285  Identities=14%  Similarity=0.195  Sum_probs=227.2

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++| | ++++|++|+.||+|++||+.+....                 ....+|...|.++.++| +
T Consensus        11 ~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~-----------------~~~~~~~~~v~~~~~~~-~   70 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLG-----------------TVVYTGQGFLNSVCYDS-E   70 (313)
T ss_dssp             EEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEE-----------------EEEEECSSCEEEEEEET-T
T ss_pred             HHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEE-----------------EEeecCCccEEEEEECC-C
Confidence            4567899999999999 5 4678999999999999998654311                 11236788999999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCC---eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCT---RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~  191 (441)
                      +.+|++|+.|+.|++|++...   +.+..+. +.+.+.++.+.     ..++++++.|+.|++||  .++....+.+|..
T Consensus        71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~  143 (313)
T 3odt_A           71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNA  143 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred             CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-----CCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence            889999999999999998654   3344443 34567777662     34789999999999999  6777888999999


Q ss_pred             CeEEEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          192 GIMTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       192 ~v~~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      .+.++.|+| +++ .+++++.|+.|++||...  ....+                                         
T Consensus       144 ~v~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~~~-----------------------------------------  179 (313)
T 3odt_A          144 SVWDAKVVSFSEN-KFLTASADKTIKLWQNDK--VIKTF-----------------------------------------  179 (313)
T ss_dssp             CEEEEEEEETTTT-EEEEEETTSCEEEEETTE--EEEEE-----------------------------------------
T ss_pred             ceeEEEEccCCCC-EEEEEECCCCEEEEecCc--eEEEE-----------------------------------------
Confidence            999999999 555 689999999999999432  11111                                         


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                   ...|...|.+++|+|++. +++++.|++|++||+.+++..    .....+.
T Consensus       180 -----------------------------~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~----~~~~~~~  225 (313)
T 3odt_A          180 -----------------------------SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL----RTYEGHE  225 (313)
T ss_dssp             -----------------------------CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE----EEEECCS
T ss_pred             -----------------------------eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh----hhhhcCC
Confidence                                         012567799999999998 999999999999999987632    2233345


Q ss_pred             CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          351 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      .....+++++++.++.....+.+++||+.+++....+.+|..+|.+++|+|+++ +++++.|+.|++|++.+++..
T Consensus       226 ~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          226 SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred             ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence            566778899998655445567999999999999999999999999999999998 667999999999999877644

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-36  Score=289.93  Aligned_cols=300  Identities=12%  Similarity=0.178  Sum_probs=236.9

Q ss_pred             CCCceeEEEccCCCCcEEEEe----------eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSG----------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~----------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  111 (441)
                      +...|++++|+|++..+|++|          +.|++|+|||+.++.....               .....|...|.++.|
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~---------------~~~~~~~~~v~~~~~   75 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---------------IASLQVDSKFNDLDW   75 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC---------------SCCCCCSSCEEEEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE---------------EEEEecCCceEEEEE
Confidence            345789999998544599999          9999999999986642110               011258889999999


Q ss_pred             eeCCCCEEEEEeCCCcEEEEECCC----CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-----
Q 013545          112 YPVDTGLFVTGSYDHYVKVWDTNC----TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-----  181 (441)
Q Consensus       112 ~~~~~~~l~sgs~D~~i~iWd~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-----  181 (441)
                      ++ ++.+|++|+.|++|++||+.+    ...+..+. +.+.+.++.++++.  ..+|++++.|+.|++||+.+++     
T Consensus        76 s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           76 SH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             CS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             CC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEEECCCCcccccc
Confidence            87 788999999999999999987    33555544 45678888998852  3589999999999999999886     


Q ss_pred             -eee---eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          182 -ISQ---TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       182 -~~~---~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                       ...   .+.+|...|.+++|+|++..+|++++.|+.|++||++++++...+....                        
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------  208 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS------------------------  208 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC------------------------
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc------------------------
Confidence             332   3468999999999999955578999999999999998876554432100                        


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCC---cEEEeeC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDS---RIRLWDV  333 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~---~i~~wd~  333 (441)
                                                               ...+|...|.+++|+|++ .+|++++.|+   +|++||+
T Consensus       209 -----------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          209 -----------------------------------------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             -----------------------------------------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             -----------------------------------------cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence                                                     012456789999999997 6899999999   9999999


Q ss_pred             CCCCceeeeeeeEE-eccCcceEEEeeC-CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEe
Q 013545          334 ESGRNTLVNFETVR-LQTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTG  409 (441)
Q Consensus       334 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~  409 (441)
                      .++.....   ... .+......+++++ ++.++++++. +.+++||+.+++.+.++.+|...|.+++|+|++ ++|+++
T Consensus       248 ~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          248 RNANTPLQ---TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             TSTTSCSB---CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred             CCCCCCcE---EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE
Confidence            98642221   112 2345566788888 8888877764 689999999999999999999999999999999 899999


Q ss_pred             ecCCcEEEeCCCCCCCCC
Q 013545          410 GNDRQILVWCPSRHISDG  427 (441)
Q Consensus       410 s~D~~i~vW~~~~~~~~~  427 (441)
                      +.|++|++|++.+.....
T Consensus       325 ~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          325 SFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             CSSSEEEEEESCCCCCSS
T ss_pred             ecCCcEEEEEccCCCCCc
Confidence            999999999998776543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-34  Score=282.12  Aligned_cols=344  Identities=14%  Similarity=0.192  Sum_probs=241.0

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ..+++++|+| ++++|++|+.||+|++||+.+....                 ....+|  .+.++.++++++.+|++|+
T Consensus        57 ~~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~l~~~~  116 (420)
T 3vl1_A           57 DAGKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGS-----------------KMLKRA--DYTAVDTAKLQMRRFILGT  116 (420)
T ss_dssp             BCCTTCEEEE-EETTEEEEEETTEEEEEECCSEETT-----------------TTSCSC--CEEEEEEECSSSCEEEEEE
T ss_pred             ccccceeeee-cCCeEEEEEcCCcEEEEEeccccee-----------------eEEecC--CceEEEEEecCCCEEEEEE
Confidence            4566899997 5778999999999999998765431                 111233  4555656666899999999


Q ss_pred             CCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545          124 YDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~  202 (441)
                      .|++|++||+.+++....+ .+.+.+.++.++++.   .+|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          117 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG---EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG  193 (420)
T ss_dssp             TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred             CCCCEEEEeCCCcceeeecccccCccEEEEECCCC---CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence            9999999999998887765 456789999999864   489999999999999999999999999999999999999998


Q ss_pred             CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      + .|++++.|++|++||++++++...+.........   ..............     ..........+.+++.++..+.
T Consensus       194 ~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~  264 (420)
T 3vl1_A          194 R-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG---VNSIALFVGTDRQL-----HEISTSKKNNLEFGTYGKYVIA  264 (420)
T ss_dssp             T-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC---EEEEEEEECCCSSC-----GGGCCCCCCTTCSSCTTEEEEE
T ss_pred             C-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC---ccEEEEecCCccee-----eecccCcccceEEcCCCCEEEE
Confidence            7 5789999999999999998887776543221100   00000000000000     0000011122333333333222


Q ss_pred             CCccccc--CC--CcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          283 GSVRQRL--HP--GMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       283 ~~~~~~~--~~--~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                      +..+..+  ..  ...........|...|++++|+|++. +|++|+.|++|++||+.+++...   .....+...++...
T Consensus       265 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~~~v~~~  341 (420)
T 3vl1_A          265 GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV---GEFLINEGTPINNV  341 (420)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS---EEEEESTTSCEEEE
T ss_pred             EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch---hhhhccCCCCceEE
Confidence            1111110  00  00000111235778999999999999 99999999999999999875322   22333345566666


Q ss_pred             eeCCCcEEEEeCC-CceEEEEccCC---------ceEeeecccccceEEEEEcCCCC---eEEEeecCCcEEEeCCCC
Q 013545          358 TTQDPAVVFVPCM-TAVKAFDIWSG---------KTCLTFRGHYEYVNCCCFSSQDQ---ELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       358 ~~~~~~~~~~~~~-~~~~~wd~~~~---------~~~~~l~gh~~~v~~v~fspd~~---~l~s~s~D~~i~vW~~~~  422 (441)
                      +.+++..+++++. +.+++|++.+.         .....+.+|.+.|.+++|+||++   .|++++.++.+++|+++.
T Consensus       342 ~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          342 YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            6777877777765 68999998763         22345778999999999999999   788888899999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=276.99  Aligned_cols=248  Identities=17%  Similarity=0.199  Sum_probs=195.9

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .|...|++++|+| + +.|++|+.||+|+|||+.+++...          .   ......+|+..|.++.|+| ++.+|+
T Consensus        80 ~~~~~v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~----------~---~~~~~~~H~~~V~~v~~sp-dg~~l~  143 (344)
T 4gqb_B           80 QTEAGVADLTWVG-E-RGILVASDSGAVELWELDENETLI----------V---SKFCKYEHDDIVSTVSVLS-SGTQAV  143 (344)
T ss_dssp             EESSCEEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCE----------E---EEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred             ccCCCEEEEEEeC-C-CeEEEEECCCEEEEEeccCCCcee----------E---eeccccCCCCCEEEEEECC-CCCEEE
Confidence            3567899999996 3 479999999999999998765321          0   0112348999999999987 789999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec--CCCCCeEEEE
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIMTVE  197 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~--~h~~~v~~v~  197 (441)
                      ||+.|++|++||+++++++..+. +.+.+.++.++++.  ..+|++++.|+.|++||+++++....+.  .|...+.+++
T Consensus       144 sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK--DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC--TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC--CCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence            99999999999999999988886 45678889998864  3578999999999999999999887764  5667899999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      |+|++..+|++|+.||+|++||+++++++..                                                 
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~-------------------------------------------------  252 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLS-------------------------------------------------  252 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC--CCEE-------------------------------------------------
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCCcEEEE-------------------------------------------------
Confidence            9998777889999999999999987644332                                                 


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                            +.+|...|++|+|+|++ .+|+||+.|++|+|||+.+++.     .....+.+....+
T Consensus       253 ----------------------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----~~~~~H~~~V~~v  305 (344)
T 4gqb_B          253 ----------------------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----FRSQAHRDFVRDA  305 (344)
T ss_dssp             ----------------------EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----EEECCCSSCEEEE
T ss_pred             ----------------------EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----EEEcCCCCCEEEE
Confidence                                  24677889999999998 5799999999999999987642     1223345667788


Q ss_pred             EeeCCCcE-EEEeC-CCceEEEEccCCc
Q 013545          357 ATTQDPAV-VFVPC-MTAVKAFDIWSGK  382 (441)
Q Consensus       357 ~~~~~~~~-~~~~~-~~~~~~wd~~~~~  382 (441)
                      +++|++.. +++++ ++.+++|++.+..
T Consensus       306 ~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99998864 44544 5799999997653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.1e-34  Score=271.81  Aligned_cols=250  Identities=22%  Similarity=0.338  Sum_probs=208.2

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..+|...|.++.|++ ++.+|+||+.|++|++||+.++..+..+.. ...+..+.++|++   .+|++|+.|+.|++||+
T Consensus        51 l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           51 LRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---NYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS---SEEEEEETTCEEEEEET
T ss_pred             ecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC---CEEEEEeCCCeEEEEEC
Confidence            458999999999987 789999999999999999999998877765 4568888888854   48999999999999999


Q ss_pred             CCCc----eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          178 ASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       178 ~~~~----~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      .++.    ....+.+|.+.|.++.|+|++.  +++++.|++|++||++++.+...+                        
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~------------------------  180 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF------------------------  180 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEE------------------------
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEE------------------------
Confidence            8763    4567889999999999999874  689999999999999876543322                        


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~  333 (441)
                                                                     .+|.+.|++++|+|++.+|++|+.|++|++||+
T Consensus       181 -----------------------------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~  213 (340)
T 1got_B          181 -----------------------------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             -----------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             -----------------------------------------------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence                                                           357788999999999999999999999999999


Q ss_pred             CCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc--cccceEEEEEcCCCCeEEEee
Q 013545          334 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG--HYEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g--h~~~v~~v~fspd~~~l~s~s  410 (441)
                      .+++..    .....+......++++|++..+++++. +.+++||+.+++.+..+..  +...|.+++|+|+|++|++|+
T Consensus       214 ~~~~~~----~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          214 REGMCR----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             TTCSEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeeE----EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence            887532    222334456677899999998888765 6899999999888777653  335799999999999999999


Q ss_pred             cCCcEEEeCCCCCCCCCcc
Q 013545          411 NDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       411 ~D~~i~vW~~~~~~~~~~~  429 (441)
                      .|++|++|+..+.......
T Consensus       290 ~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEEcccCcEeeEe
Confidence            9999999999876654443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.8e-34  Score=277.57  Aligned_cols=284  Identities=17%  Similarity=0.239  Sum_probs=223.2

Q ss_pred             CCCCc--eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           41 PHKGS--INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        41 ~H~~~--V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +|...  ++++++++   ..+++++.|++|++||+.++...            ...    ...|...|.++.|++ ++.+
T Consensus        89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~------------~~~----~~~~~~~v~~v~~s~-~~~~  148 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVS------------ALA----ETDESTYVASVKWSH-DGSF  148 (401)
T ss_dssp             TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEE------------EEE----ECCTTCCEEEEEECT-TSSE
T ss_pred             CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEe------------Eee----ecCCCCCEEEEEECC-CCCE
Confidence            66654  44566652   35888999999999999866421            011    124888999999987 7889


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-CCceeeeecCCCCCeEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-~~~~~~~l~~h~~~v~~v  196 (441)
                      |++|+.|++|++||+.+++.+..+. +.+.+.++.+.+     .+|++++.|+.|++||++ .+..+..+.+|...|.++
T Consensus       149 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  223 (401)
T 4aez_A          149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR-----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL  223 (401)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             EEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC-----CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence            9999999999999999998887775 345677777732     489999999999999998 456678899999999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      +|+|+++ +|++|+.|+.|++||++++.+...+                                               
T Consensus       224 ~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~-----------------------------------------------  255 (401)
T 4aez_A          224 AWRSDGL-QLASGGNDNVVQIWDARSSIPKFTK-----------------------------------------------  255 (401)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTCSSEEEEE-----------------------------------------------
T ss_pred             EEcCCCC-EEEEEeCCCeEEEccCCCCCccEEe-----------------------------------------------
Confidence            9999987 5789999999999999865433221                                               


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEee--cCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAG--SDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs--~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                              ..|...|.+++|+|++. .+++++  .|++|++||+.+++...    ... .....
T Consensus       256 ------------------------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~----~~~-~~~~v  306 (401)
T 4aez_A          256 ------------------------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN----TVD-AGSQV  306 (401)
T ss_dssp             ------------------------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE----EEE-CSSCE
T ss_pred             ------------------------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE----EEe-CCCcE
Confidence                                    24667899999999875 555654  79999999999876321    111 23456


Q ss_pred             eEEEeeCCCcEEEEeC---CCceEEEEccCCceEe--eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          354 IQLATTQDPAVVFVPC---MTAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~---~~~~~~wd~~~~~~~~--~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ..+++++++..+++++   .+.+++|++.+++...  .+.+|...|.+++|+||+++|++++.|++|++|++.++...
T Consensus       307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            7789999999888853   4789999999876554  47899999999999999999999999999999999887644

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-34  Score=276.11  Aligned_cols=294  Identities=16%  Similarity=0.175  Sum_probs=227.5

Q ss_pred             CCCCceeEEEccCCCCc-EEEEeeCCCcEEEEEC----CCCcccCCCCceeccceeEEeecc-----cccCcccceeEEE
Q 013545           41 PHKGSINSLQVDLTEER-YLLSGASDSSVAVYDV----QRATDYEGGGHIAKHRSVFVVDKQ-----HEHGHKYAISSAI  110 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~-~l~s~s~Dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~V~~~~  110 (441)
                      .|.+.|++++|+|+ ++ +|++|+.||.|+|||+    .++...      ............     ...+|...|.++.
T Consensus        43 ~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           43 VKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKY------WKLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             EECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------C------EEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             eccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCcccc------ccccccccccccccccccccCCCCceEEEE
Confidence            45699999999974 66 9999999999999999    655410      000001111110     1124788999999


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (441)
Q Consensus       111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h  189 (441)
                      |+| ++.+|++|+.|++|++|| .++..+..+. +.+.+.++.++++.   .+|++++.|+.|++||+++++.+..+..|
T Consensus       116 ~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (425)
T 1r5m_A          116 WSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG---THIISMDVENVTILWNVISGTVMQHFELK  190 (425)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS---SEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             EcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence            987 789999999999999999 5666666665 45678889998854   47889999999999999999999888888


Q ss_pred             CCC---------------eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          190 RDG---------------IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       190 ~~~---------------v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      ...               +.++.|+|++  .+++++.|+.|++||++++.....                          
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~--------------------------  242 (425)
T 1r5m_A          191 ETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGK--------------------------  242 (425)
T ss_dssp             ---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEE--------------------------
T ss_pred             ccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeee--------------------------
Confidence            777               9999999985  368899999999999876432211                          


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                                                                   ...|...|.+++|+|++.+|++++.|++|++||+.
T Consensus       243 ---------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          243 ---------------------------------------------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             ---------------------------------------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             ---------------------------------------------eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                                                         12466789999999999999999999999999998


Q ss_pred             CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      +++...    ....+......+.+++++ .++++ ..+.+++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+
T Consensus       278 ~~~~~~----~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          278 NGNSQN----CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             SBSCSE----EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCccce----EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence            765322    222234556678889988 55554 457899999999999999999999999999999999999999999


Q ss_pred             cEEEeCCCCCC
Q 013545          414 QILVWCPSRHI  424 (441)
Q Consensus       414 ~i~vW~~~~~~  424 (441)
                      .|++|++.+..
T Consensus       353 ~i~i~~~~~~~  363 (425)
T 1r5m_A          353 QVNVYDLKKLN  363 (425)
T ss_dssp             CEEEEECHHHH
T ss_pred             eEEEEECCCCc
Confidence            99999998655

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-34  Score=277.31  Aligned_cols=270  Identities=16%  Similarity=0.143  Sum_probs=190.2

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC------CCcEEEE
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY------DHYVKVW  131 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~------D~~i~iW  131 (441)
                      ++++++.+.....|++....                     ...|+..|.++.|+| ||.+|||||.      |++|++|
T Consensus        18 ~~~~~~g~~~~~~w~~p~~~---------------------p~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~   75 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVTA---------------------PACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVF   75 (357)
T ss_dssp             -------------------------------------------CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEE
T ss_pred             eEEecCCCccccccCCCCCC---------------------cccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEE
Confidence            45666677888999874221                     126899999999987 8999999997      7889999


Q ss_pred             ECCCCeE-----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee----eecCCCCCeEEEEEecCC
Q 013545          132 DTNCTRV-----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ----TLSGHRDGIMTVEWSTSS  202 (441)
Q Consensus       132 d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~----~l~~h~~~v~~v~fsp~~  202 (441)
                      +..++..     .....+...+.+++|+++.    .+++++.|+.|++||+.+++...    ...+|...|.+++|+|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg  151 (357)
T 4g56_B           76 KDPEGAPNESLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG  151 (357)
T ss_dssp             SSCC---CGGGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS
T ss_pred             ECCCCCcceeEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC
Confidence            9876643     2334456678999999853    35567889999999999886543    345899999999999999


Q ss_pred             CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      + +|++|+.|++|++||++++.+...+                                                     
T Consensus       152 ~-~l~sgs~dg~v~iwd~~~~~~~~~~-----------------------------------------------------  177 (357)
T 4g56_B          152 T-QAVSGGKDFSVKVWDLSQKAVLKSY-----------------------------------------------------  177 (357)
T ss_dssp             S-EEEEEETTSCEEEEETTTTEEEEEE-----------------------------------------------------
T ss_pred             C-EEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------------------------
Confidence            8 5799999999999999876544332                                                     


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD  361 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (441)
                                        .+|.+.|++|+|+|++. ++++++.|++|++||+++++.....  ........+..++++|+
T Consensus       178 ------------------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          178 ------------------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--DFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             ------------------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--CCTTCCSCEEEEEECTT
T ss_pred             ------------------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--eeccccccccchhhhhc
Confidence                              35778899999999985 7899999999999999987642210  11112234566788887


Q ss_pred             C-cEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCCCCCC
Q 013545          362 P-AVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       362 ~-~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~~~~~  427 (441)
                      + .++++++. ..+++||+.+++.+.++.+|...|++++|+|++ ++|+||+.|++|+|||+.+++...
T Consensus       238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~  306 (357)
T 4g56_B          238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR  306 (357)
T ss_dssp             STTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred             ccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence            5 45555544 689999999999999999999999999999997 579999999999999998876543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=305.12  Aligned_cols=221  Identities=13%  Similarity=0.157  Sum_probs=176.1

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      ..||.+.|++|+|+| ++++||+|+.||+|+|||..+...            ..      ...|...|.++.|++  +.+
T Consensus        13 ~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~------------~~------~~~~~~~V~~l~fsp--g~~   71 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEV------------VI------KLEDRSAIKEMRFVK--GIY   71 (902)
T ss_dssp             EEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEE------------EE------ECSSCCCEEEEEEET--TTE
T ss_pred             ccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEE------------EE------EcCCCCCEEEEEEcC--CCE
Confidence            448999999999997 578999999999999999764321            01      124778899999997  669


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-----------eeec
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-----------QTLS  187 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~-----------~~l~  187 (441)
                      |+|++.|++|++||+.+++++..+.+.+.+.++.++|+.   .+|++|+.|+.|++||++++++.           ..+.
T Consensus        72 L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g---~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~  148 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASL---DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA  148 (902)
T ss_dssp             EEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTC---SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred             EEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCC---CEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence            999999999999999999998888888889999998864   48999999999999999988753           3457


Q ss_pred             CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN  267 (441)
Q Consensus       188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (441)
                      +|.+.|.+++|+|++..++++|+.||+| +||++++.+...+...... +  .                    +     .
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~-g--~--------------------~-----~  199 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP-F--A--------------------P-----G  199 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT-T--C--------------------C-----C
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC-c--C--------------------C-----C
Confidence            8999999999999755578899999999 9999988776665321100 0  0                    0     0


Q ss_pred             CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                     +...          ......|...|++++|+|+|.+|++|+.|++|++||+.+++
T Consensus       200 ---------------~~~~----------~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          200 ---------------GDFS----------EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             ---------------STTC----------CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             ---------------cccc----------cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence                           0000          00123577889999999999999999999999999998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-33  Score=288.12  Aligned_cols=359  Identities=15%  Similarity=0.164  Sum_probs=247.8

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc---ceeEEEEe
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWY  112 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~  112 (441)
                      ...+.+|...|++++|+|++..+|++++.|++|++||+.++...                 ....+|..   .|.++.|+
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~  215 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-----------------ASDRTHHKQGSFVRDVEFS  215 (615)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-----------------EEECSSSCTTCCEEEEEEC
T ss_pred             ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee-----------------eeecccCCCCceEEEEEEC
Confidence            34467899999999999754348999999999999998754321                 11346887   89999998


Q ss_pred             eCCCCEEEEEeCCCcEEEEECCCCeEEEEE-----ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545          113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNF-----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       113 ~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      |.++.+|++++.|++|++||+.+++.+..+     .+.+.+..+.++ +   ..+|++++.|+.|++||+++++.+..+.
T Consensus       216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D---SQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S---SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C---CCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            833889999999999999999999998888     556778888887 3   3478999999999999999999988887


Q ss_pred             CC----CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC--CCcccccc--------c-----
Q 013545          188 GH----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR--PPLLKRKS--------L-----  248 (441)
Q Consensus       188 ~h----~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~-----  248 (441)
                      .|    ...+.++.|. +++ .+++++.|+.|++||++++.++..+..+...+...  +.+.....        .     
T Consensus       292 ~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~  369 (615)
T 1pgu_A          292 LDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQ  369 (615)
T ss_dssp             CCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEEC
T ss_pred             CCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcC
Confidence            76    4778888886 555 57899999999999999877766665432211000  00000000        0     


Q ss_pred             -ccCccCCcCCC-CCCcc--cCCCC----------------CccccCcccc-----------------------------
Q 013545          249 -SAGQNSSVKPR-APQKR--SANGN----------------GVRQSSVGRI-----------------------------  279 (441)
Q Consensus       249 -~~~~~~~~~~~-~~~~~--~~~~~----------------~~~~~~~~~~-----------------------------  279 (441)
                       ........... .....  ..++.                .+..++.+..                             
T Consensus       370 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (615)
T 1pgu_A          370 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG  449 (615)
T ss_dssp             CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred             cccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCc
Confidence             00000000000 00000  00000                0000011000                             


Q ss_pred             ---------cCCCCc-cccc--CCCccccc--ccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545          280 ---------PAKGSV-RQRL--HPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  345 (441)
Q Consensus       280 ---------~~~~~~-~~~~--~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~  345 (441)
                               .+.+.. +..+  ........  ....+|...|++++|+|++++|++++.|++|++||+.+++...    .
T Consensus       450 ~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~----~  525 (615)
T 1pgu_A          450 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT----S  525 (615)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----C
T ss_pred             eEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee----E
Confidence                     000000 0000  00000000  2235688899999999999999999999999999999875321    1


Q ss_pred             EEe-ccCcceEEEeeC----------CCcEEEEeCC-CceEEEEccCC-ceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545          346 VRL-QTSKPIQLATTQ----------DPAVVFVPCM-TAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       346 ~~~-~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~wd~~~~-~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                      ... +......++++|          ++.++++++. +.+++||+.++ +.+..+.+|...|++++|+||++ |+|++.|
T Consensus       526 ~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d  604 (615)
T 1pgu_A          526 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD  604 (615)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred             eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC
Confidence            122 445667889999          8998888765 68999999998 78899999999999999999999 9999999


Q ss_pred             CcEEEeCCCC
Q 013545          413 RQILVWCPSR  422 (441)
Q Consensus       413 ~~i~vW~~~~  422 (441)
                      ++|++|++++
T Consensus       605 ~~v~iw~~~~  614 (615)
T 1pgu_A          605 ACIKRWNVVL  614 (615)
T ss_dssp             SCEEEEEEC-
T ss_pred             ceEEEEeeec
Confidence            9999999865

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.6e-33  Score=275.35  Aligned_cols=275  Identities=21%  Similarity=0.351  Sum_probs=215.3

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+|...|++++++   +++|++|+.||+|++||+.+++..                 ....+|...|.++.+   ++.+|
T Consensus       130 ~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~-----------------~~~~~h~~~v~~l~~---~~~~l  186 (435)
T 1p22_A          130 SETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECK-----------------RILTGHTGSVLCLQY---DERVI  186 (435)
T ss_dssp             CSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEE-----------------EEECCCSSCEEEEEC---CSSEE
T ss_pred             cCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEE-----------------EEEcCCCCcEEEEEE---CCCEE
Confidence            4677889999883   579999999999999999765421                 123479999998887   57899


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee---eeecCCCCCeEE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS---QTLSGHRDGIMT  195 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~---~~l~~h~~~v~~  195 (441)
                      ++|+.|++|++||+.+++.+..+.. .+.+..+.+++     .++++|+.|+.|++||++++...   ..+.+|...|.+
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  261 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  261 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEE
Confidence            9999999999999999998877764 45577777653     37999999999999999988765   678899999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +.|  +++ .+++|+.||+|++||++++.++..+                                              
T Consensus       262 ~~~--~~~-~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------------------------  292 (435)
T 1p22_A          262 VDF--DDK-YIVSASGDRTIKVWNTSTCEFVRTL----------------------------------------------  292 (435)
T ss_dssp             EEE--ETT-EEEEEETTSEEEEEETTTCCEEEEE----------------------------------------------
T ss_pred             EEe--CCC-EEEEEeCCCeEEEEECCcCcEEEEE----------------------------------------------
Confidence            999  444 5789999999999999876544332                                              


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  355 (441)
                                               .+|...|.+++|  ++.+|++|+.|++|++||+.+++..    .....+......
T Consensus       293 -------------------------~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~----~~~~~h~~~v~~  341 (435)
T 1p22_A          293 -------------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL----RVLEGHEELVRC  341 (435)
T ss_dssp             -------------------------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEE
T ss_pred             -------------------------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEE----EEEeCCcCcEEE
Confidence                                     246677888888  4789999999999999999987632    122223333334


Q ss_pred             EEeeCCCcEEEEeCC-CceEEEEccCCc---------eEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          356 LATTQDPAVVFVPCM-TAVKAFDIWSGK---------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~---------~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +++  ++..+++++. +.+++||+.+++         .+.++.+|.+.|.+++|  |+++|+||+.|++|++|++.+...
T Consensus       342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            444  7777777654 789999997766         78899999999999999  788999999999999999987654


Q ss_pred             C
Q 013545          426 D  426 (441)
Q Consensus       426 ~  426 (441)
                      .
T Consensus       418 ~  418 (435)
T 1p22_A          418 A  418 (435)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.8e-33  Score=273.21  Aligned_cols=286  Identities=21%  Similarity=0.337  Sum_probs=225.6

Q ss_pred             eeecCCCCce-eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           37 EIVSPHKGSI-NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        37 ~~~~~H~~~V-~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ..+.+|.+.| +++.++   +++|+||+.||+|++||+.+++..                 ....+|...|.++.+++ +
T Consensus       115 ~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~-----------------~~~~~h~~~V~~l~~~~-~  173 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFL-----------------LQLSGHDGGVWALKYAH-G  173 (464)
T ss_dssp             EEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEECS-T
T ss_pred             EEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEE-----------------EEEeCCCcCEEEEEEcC-C
Confidence            4677998775 677774   469999999999999999765421                 12348999999999976 3


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce------------
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI------------  182 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~------------  182 (441)
                      + +|++|+.|++|++||+.+++.+..+. +.+.+.++.+.+.. +..++++|+.|+.|++||++++..            
T Consensus       174 ~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  251 (464)
T 3v7d_B          174 G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  251 (464)
T ss_dssp             T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred             C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence            4 99999999999999999999888877 45678888888643 346899999999999999987752            


Q ss_pred             -----------eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          183 -----------SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       183 -----------~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                                 +..+.+|...|.++.  ++++ ++++++.|++|++||+++++++..+                      
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~----------------------  306 (464)
T 3v7d_B          252 VFHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQMKCLYIL----------------------  306 (464)
T ss_dssp             EESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTTEEEEEE----------------------
T ss_pred             EeeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCCCcEEEEe----------------------
Confidence                       456788999999884  5555 5789999999999999876544322                      


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  331 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w  331 (441)
                                                                       .+|...|.+++|+|++.+|++|+.|++|++|
T Consensus       307 -------------------------------------------------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw  337 (464)
T 3v7d_B          307 -------------------------------------------------SGHTDRIYSTIYDHERKRCISASMDTTIRIW  337 (464)
T ss_dssp             -------------------------------------------------CCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             -------------------------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence                                                             2466789999999999999999999999999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s  410 (441)
                      |+.+++..    .....+......+.++  +..+++++. +.+++||+.+++....+. |...+..++|+|++++|++|+
T Consensus       338 d~~~~~~~----~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          338 DLENGELM----YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             ETTTTEEE----EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE
T ss_pred             ECCCCcEE----EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec
Confidence            99987532    2222233444444544  566666554 789999999887666553 677889999999999999998


Q ss_pred             cCCcEEEeCCCCCCCCC
Q 013545          411 NDRQILVWCPSRHISDG  427 (441)
Q Consensus       411 ~D~~i~vW~~~~~~~~~  427 (441)
                       |+.|++|++.+++...
T Consensus       411 -dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          411 -ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             -TTEEEEEETTTCCEEE
T ss_pred             -CCeEEEEECCCCcEEe
Confidence             9999999999887553

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-32  Score=272.81  Aligned_cols=280  Identities=20%  Similarity=0.279  Sum_probs=221.0

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee-C
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-V  114 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~  114 (441)
                      ...+.+|.+.|++++|++ ++ +|++|+.||+|++||+.++...                 ....+|...|.++.+.+ +
T Consensus       155 ~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~l~~~~~~  215 (464)
T 3v7d_B          155 LLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCT-----------------HVFEGHNSTVRCLDIVEYK  215 (464)
T ss_dssp             EEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEEESS
T ss_pred             EEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEE-----------------EEECCCCCccEEEEEecCC
Confidence            445679999999999986 34 8999999999999999865421                 12347999999999986 4


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEE-----------------------Ee-cCCeeEEEeeccCCCCccEEEEEeCCC
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMN-----------------------FK-MPGKVYRTAMSPLAASHMLIAAGTEDV  170 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~~~las~s~d~  170 (441)
                      ++.++++|+.|++|++||+.++.....                       +. +...+..+  ++   ...++++|+.|+
T Consensus       216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~---~~~~l~~~~~d~  290 (464)
T 3v7d_B          216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG---HGNIVVSGSYDN  290 (464)
T ss_dssp             SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE---ETTEEEEEETTS
T ss_pred             CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC---CCCEEEEEeCCC
Confidence            678999999999999999987653321                       11 12223332  23   235899999999


Q ss_pred             cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      .|++||+.+++.+..+.+|...|.++.|+|+++ .+++|+.||+|++||+++++++..+                     
T Consensus       291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~---------------------  348 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTL---------------------  348 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEE---------------------
T ss_pred             eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEE---------------------
Confidence            999999999999999999999999999999987 5789999999999999876554332                     


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                                                                        .+|...|.+++|+  +.+|++++.|++|++
T Consensus       349 --------------------------------------------------~~h~~~v~~~~~~--~~~l~s~s~dg~v~v  376 (464)
T 3v7d_B          349 --------------------------------------------------QGHTALVGLLRLS--DKFLVSAAADGSIRG  376 (464)
T ss_dssp             --------------------------------------------------CCCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred             --------------------------------------------------eCCCCcEEEEEEc--CCEEEEEeCCCcEEE
Confidence                                                              2466789999997  579999999999999


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEee-ecccccceEEEEEcCCCCeEEEe
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~-l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      ||+.+......     .........+++.+++..+++++.+.+++||+.+++.+.. +.+|...|++++|+ ++..++++
T Consensus       377 wd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~  450 (464)
T 3v7d_B          377 WDANDYSRKFS-----YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAV  450 (464)
T ss_dssp             EETTTCCEEEE-----EECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEE
T ss_pred             EECCCCceeee-----ecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEE
Confidence            99998653221     1123345567888999999888888999999999999886 78899999999998 34556667


Q ss_pred             ecCCcEEEeC
Q 013545          410 GNDRQILVWC  419 (441)
Q Consensus       410 s~D~~i~vW~  419 (441)
                      +.|+.+.+|-
T Consensus       451 ~~~g~~~i~~  460 (464)
T 3v7d_B          451 EKDGQSFLEI  460 (464)
T ss_dssp             EETTEEEEEE
T ss_pred             EeCCeEEEEE
Confidence            7788766664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=299.99  Aligned_cols=366  Identities=15%  Similarity=0.182  Sum_probs=240.3

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeec-----ccccCcccceeEEEEeeCCC
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK-----QHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~V~~~~~~~~~~  116 (441)
                      |.+.|++++|+| ++++|++|+.||+|++||+.++...           .+.+..     ....+|.+.|.+++|+|.++
T Consensus        97 ~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~-----------~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           97 VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS-----------SFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE-----------EEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc-----------cceeccccccccccccCCCCeEEEEEccCCC
Confidence            778999999997 5789999999999999999765321           000100     22358999999999998666


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecC-------------------CeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP-------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      .++++|+.|++| +||+++++++..+...                   ..+.++.|+|++   .+|++|+.|+.|++||+
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg---~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS---LHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS---SEEEEEETTCCEEEEET
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC---CEEEEEECCCeEEEEEC
Confidence            799999999999 9999999988877644                   558899999864   48999999999999999


Q ss_pred             CCCceeee--e---cC-------------CCCCeEEEEEec----CCCcEEEEeecC-----CcEEEEEcC---------
Q 013545          178 ASGAISQT--L---SG-------------HRDGIMTVEWST----SSEWILVTGGCD-----GAIRFWDIR---------  221 (441)
Q Consensus       178 ~~~~~~~~--l---~~-------------h~~~v~~v~fsp----~~~~~l~s~s~D-----g~I~iWD~~---------  221 (441)
                      ++++++..  +   .+             |...|.+++|+|    ++..+|++|+.|     ..+++|++.         
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s  320 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS  320 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence            99987643  3   12             355799999965    333577888776     379999852         


Q ss_pred             ---------CCceeeEecc--CC-----------ccc--c-CCC---------CcccccccccCc-cCC-----c--C--
Q 013545          222 ---------RAGCFRVLDQ--SQ-----------SQL--G-RRP---------PLLKRKSLSAGQ-NSS-----V--K--  257 (441)
Q Consensus       222 ---------~~~~~~~~~~--~~-----------~~~--~-~~~---------~~~~~~~~~~~~-~~~-----~--~--  257 (441)
                               .+.+.+.+..  ..           .+.  + ..+         .......+..+. ...     .  .  
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~  400 (902)
T 2oaj_A          321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL  400 (902)
T ss_dssp             HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred             hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence                     1122222210  00           000  0 000         000000000000 000     0  0  


Q ss_pred             ---------------------------CCCCCcccCCCCCccccCcccccCCCCcccccC-----CCcccccccc-----
Q 013545          258 ---------------------------PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH-----PGMLSSQDRA-----  300 (441)
Q Consensus       258 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----  300 (441)
                                                 .............+.+++++++.+.+..+..+.     .+.......+     
T Consensus       401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~  480 (902)
T 2oaj_A          401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS  480 (902)
T ss_dssp             TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred             CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence                                       000000000111234455555544433332211     1111100001     


Q ss_pred             ----eeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce-------------------------------------
Q 013545          301 ----TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT-------------------------------------  339 (441)
Q Consensus       301 ----~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~-------------------------------------  339 (441)
                          .+|...|++|+|+|||++||+|+.|++|+|||+.+++..                                     
T Consensus       481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (902)
T 2oaj_A          481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG  560 (902)
T ss_dssp             HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred             hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence                278889999999999999999999999999999865310                                     


Q ss_pred             ----eeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEe-----eec-ccccceEEEEEc-----CCC
Q 013545          340 ----LVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-----TFR-GHYEYVNCCCFS-----SQD  403 (441)
Q Consensus       340 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~-----~l~-gh~~~v~~v~fs-----pd~  403 (441)
                          +.....+..+...+..++++|++ ++++++. ..+++||+.++..+.     .+. +|.+.|++|+||     |||
T Consensus       561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg  639 (902)
T 2oaj_A          561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG  639 (902)
T ss_dssp             CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred             CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence                01122233355667789999999 7777765 679999998776653     454 999999999999     885


Q ss_pred             ---CeEEEeecCCcEEEeCC---CCCC
Q 013545          404 ---QELYTGGNDRQILVWCP---SRHI  424 (441)
Q Consensus       404 ---~~l~s~s~D~~i~vW~~---~~~~  424 (441)
                         ++|++|+.|++|++|++   .++.
T Consensus       640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          640 YSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             CcceEEEEEecCCcEEEEEEecCCCCc
Confidence               89999999999999998   5554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.8e-34  Score=313.04  Aligned_cols=368  Identities=18%  Similarity=0.229  Sum_probs=258.7

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-C
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-D  115 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~  115 (441)
                      ..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++...                 ....+|...|.++.|++. +
T Consensus       651 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~-----------------~~~~~~~~~v~~~~~~~~~~  712 (1249)
T 3sfz_A          651 LDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLV-----------------HTYDEHSEQVNCCHFTNKSN  712 (1249)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-----------------EEEECCSSCEEEEEECSSSS
T ss_pred             EEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceE-----------------EEEcCCCCcEEEEEEecCCC
Confidence            34678999999999997 5789999999999999999876421                 112479999999999874 3


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee--------
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--------  186 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l--------  186 (441)
                      ..++++|+.|++|++||+.++.++..+. +.+.+..+.+++++   .++++++.|+.|++||+.+++....+        
T Consensus       713 ~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  789 (1249)
T 3sfz_A          713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---ELLASCSADGTLRLWDVRSANERKSINVKRFFLS  789 (1249)
T ss_dssp             CCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--
T ss_pred             ceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---CEEEEEECCCeEEEEeCCCCcccceecccccccc
Confidence            5589999999999999999999887765 45678888998854   48999999999999998776433221        


Q ss_pred             -----------------------------------------------cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545          187 -----------------------------------------------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (441)
Q Consensus       187 -----------------------------------------------~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD  219 (441)
                                                                     .+|...|.+++|+|+++ ++++++.|+.|++||
T Consensus       790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd  868 (1249)
T 3sfz_A          790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWN  868 (1249)
T ss_dssp             ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEE
T ss_pred             cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEE
Confidence                                                           27888999999999987 578999999999999


Q ss_pred             cCCCceeeEeccCCccccCCCC-cccccccccCccCCcCCCC----------------------C---------------
Q 013545          220 IRRAGCFRVLDQSQSQLGRRPP-LLKRKSLSAGQNSSVKPRA----------------------P---------------  261 (441)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------------~---------------  261 (441)
                      +.++.+...+..+...+..... ...................                      .               
T Consensus       869 ~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  948 (1249)
T 3sfz_A          869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL  948 (1249)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred             cCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence            9988777666543322110000 0000000000000000000                      0               


Q ss_pred             ------C-c--ccCCCCCccccCcccccCCCCccccc---CCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545          262 ------Q-K--RSANGNGVRQSSVGRIPAKGSVRQRL---HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR  329 (441)
Q Consensus       262 ------~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  329 (441)
                            . .  .......+.+++.++..+.+.....+   ............+|.+.|++++|+|+|++|++++.|++|+
T Consensus       949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A          949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp             EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred             EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                  0 0  00001112233333332221111110   0000011123457889999999999999999999999999


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      +||+.+++...     ...+......+.+.+++.++.....+.+++||+.+++....+.+|.+.|.+++|+||+++|+++
T Consensus      1029 vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A         1029 VWNWQTGDYVF-----LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp             EEETTTTEEEC-----CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred             EEECCCCceEE-----EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEE
Confidence            99999875321     1223445566788888877766777899999999999999999999999999999999999999


Q ss_pred             ecCCcEEEeCCCCCCCCCccCC
Q 013545          410 GNDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       410 s~D~~i~vW~~~~~~~~~~~~~  431 (441)
                      +.|++|++|+..++.......+
T Consensus      1104 s~d~~v~iwd~~~~~~~~~l~~ 1125 (1249)
T 3sfz_A         1104 SADKTAKIWSFDLLSPLHELKG 1125 (1249)
T ss_dssp             CCSSCCCEECSSSSSCSBCCCC
T ss_pred             cCCCcEEEEECCCcceeeeecc
Confidence            9999999999988776555443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-33  Score=267.63  Aligned_cols=286  Identities=11%  Similarity=0.078  Sum_probs=227.1

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ++..+|.+.|++++|+| ++++|++++.||+|+|||+.++...         ...     ....+|...|.++.|++ ++
T Consensus         5 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~-----~~~~~~~~~v~~~~~~~-~~   68 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDL-----LQSLRYKHPLLCCNFID-NT   68 (342)
T ss_dssp             ECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEE-----EEEEECSSCEEEEEEEE-SS
T ss_pred             ecccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc---------ccc-----eeeeecCCceEEEEECC-CC
Confidence            34569999999999997 5789999999999999998765310         000     11236888999999998 68


Q ss_pred             C-EEEEEeCCCcEEEEEC-CCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC---------Ccee
Q 013545          117 G-LFVTGSYDHYVKVWDT-NCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---------GAIS  183 (441)
Q Consensus       117 ~-~l~sgs~D~~i~iWd~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~---------~~~~  183 (441)
                      . +|++|+.|++|++||+ .++.......  +.+.+..+.+++ .   .+|++++.|+.|++||+++         ++++
T Consensus        69 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-D---DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-T---TEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             CcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-C---CEEEEEcCCCeEEEEcccccccccccccCCee
Confidence            8 9999999999999999 8877643333  566788888887 2   4788999999999999988         7777


Q ss_pred             eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      ..+. |...|.+++|+|++   +++++.|+.|++||++. +.....                                  
T Consensus       145 ~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~----------------------------------  186 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGT----------------------------------  186 (342)
T ss_dssp             SSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCE----------------------------------
T ss_pred             eEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccce----------------------------------
Confidence            7777 89999999999875   68899999999999875 321000                                  


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCC-----
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESG-----  336 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~-----  336 (441)
                                                         .....|...|.+++|+| ++.+|++++.|++|++|++...     
T Consensus       187 -----------------------------------~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          187 -----------------------------------IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             -----------------------------------EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             -----------------------------------eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence                                               00123556799999999 9999999999999999999876     


Q ss_pred             CceeeeeeeEEeccC---------cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc-ccceEEEEEcCCCCe
Q 013545          337 RNTLVNFETVRLQTS---------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-YEYVNCCCFSSQDQE  405 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh-~~~v~~v~fspd~~~  405 (441)
                      .....   ....+..         ....+++++++.++++++. +.+++||+.+++.+.++.+| ..+|.+++  ||+++
T Consensus       232 ~~~~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~  306 (342)
T 1yfq_A          232 SSKRF---AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNI  306 (342)
T ss_dssp             CTTCE---EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSE
T ss_pred             cccce---eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCe
Confidence            11111   2222222         5667889999988887765 68999999999999999999 99999999  99999


Q ss_pred             EEEeecCCc-EEEeCC
Q 013545          406 LYTGGNDRQ-ILVWCP  420 (441)
Q Consensus       406 l~s~s~D~~-i~vW~~  420 (441)
                      |++|+.|++ .+.|..
T Consensus       307 l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          307 LCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEEECTHHHHCSSS
T ss_pred             EEEEecCCcccccccc
Confidence            999999999 666653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-32  Score=269.21  Aligned_cols=280  Identities=23%  Similarity=0.398  Sum_probs=223.2

Q ss_pred             eeeecCCCCce-eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           36 KEIVSPHKGSI-NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        36 ~~~~~~H~~~V-~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ..++.+|.+.| +++.++   +++|++|+.||+|++||+.+++..                 ....+|...|.++.+.  
T Consensus       111 ~~~l~~h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~--  168 (445)
T 2ovr_B          111 PKVLKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCL-----------------RTLVGHTGGVWSSQMR--  168 (445)
T ss_dssp             CEEEECSTTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEE-----------------EECCCCSSCEEEEEEE--
T ss_pred             eEEecccCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCcEE-----------------EEEcCCCCCEEEEEec--
Confidence            34678999865 666664   579999999999999999865421                 1234899999999885  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                       ++++++|+.|++|++||+.+++.+..+.. .+.+.++.+.+     ..+++|+.|+.|++||+++++.+..+.+|...|
T Consensus       169 -~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v  242 (445)
T 2ovr_B          169 -DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV  242 (445)
T ss_dssp             -TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred             -CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC-----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence             56999999999999999999998887764 45577766642     469999999999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .++.|  +++ .+++++.||.|++||++++.++..+                                            
T Consensus       243 ~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------------------------  275 (445)
T 2ovr_B          243 RCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTL--------------------------------------------  275 (445)
T ss_dssp             EEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEE--------------------------------------------
T ss_pred             EEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEe--------------------------------------------
Confidence            99999  455 4789999999999999876543322                                            


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                 .+|...|.+++|  ++.++++|+.|++|++||+.+++...    ....+....
T Consensus       276 ---------------------------~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~v  322 (445)
T 2ovr_B          276 ---------------------------QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH----TLTGHQSLT  322 (445)
T ss_dssp             ---------------------------CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE----EECCCCSCE
T ss_pred             ---------------------------cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE----EEcCCcccE
Confidence                                       246677999998  88999999999999999999876321    222222222


Q ss_pred             eEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecc---cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545          354 IQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~g---h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~  427 (441)
                      .  .+.+++..+++++ .+.+++||+.+++.+.++.+   |...|.+++|+  +++|++|+.|++|++|++.++....
T Consensus       323 ~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          323 S--GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             E--EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             E--EEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceee
Confidence            2  3334566776665 47899999999999999887   88999999996  5799999999999999999887543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-35  Score=291.60  Aligned_cols=251  Identities=11%  Similarity=0.092  Sum_probs=188.0

Q ss_pred             CCCceeEEEccCCC-C-------cEEEE-------------------eeCCCcEEEEECCCCcccCCCCceeccceeEEe
Q 013545           42 HKGSINSLQVDLTE-E-------RYLLS-------------------GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVV   94 (441)
Q Consensus        42 H~~~V~~l~~s~~~-~-------~~l~s-------------------~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~   94 (441)
                      +.+.|++|+|+|++ +       ++||+                   ++.|++|+|||+.++...      ..  ..   
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------~~--~~---  200 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------CV--KV---  200 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC------EE--EE---
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC------ce--EE---
Confidence            56789999999753 1       45555                   668899999998754321      00  00   


Q ss_pred             ecccccCcccceeEEEEeeC-----CCCEEEEEeCCCcEEEEECCCCeEE-----------EEEe-cCCeeEEEeeccCC
Q 013545           95 DKQHEHGHKYAISSAIWYPV-----DTGLFVTGSYDHYVKVWDTNCTRVV-----------MNFK-MPGKVYRTAMSPLA  157 (441)
Q Consensus        95 ~~~~~~~h~~~V~~~~~~~~-----~~~~l~sgs~D~~i~iWd~~~~~~~-----------~~~~-~~~~~~~~~~~~~~  157 (441)
                        ....+|.+.|.++.|+|.     ++.+||||+.|++|++||+.++...           ..+. +.+.+.++.|++. 
T Consensus       201 --~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-  277 (524)
T 2j04_B          201 --QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-  277 (524)
T ss_dssp             --EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-
T ss_pred             --EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-
Confidence              112357788999999984     3579999999999999999766321           2232 3456888888763 


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEE--EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCc
Q 013545          158 ASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTV--EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS  234 (441)
Q Consensus       158 ~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v--~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~  234 (441)
                         ..|++|+.|++|++||++++. +...+.+|...|.+|  .|+|+++.+|+|||.|++|+|||++++++...+     
T Consensus       278 ---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~-----  349 (524)
T 2j04_B          278 ---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT-----  349 (524)
T ss_dssp             ---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE-----
T ss_pred             ---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc-----
Confidence               279999999999999999874 456789999999999  567776347899999999999999865432221     


Q ss_pred             cccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec--cCeEEEEE
Q 013545          235 QLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKV  312 (441)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~  312 (441)
                                                                                        .+|.  ..|.+|+|
T Consensus       350 ------------------------------------------------------------------~~~~~~~~v~~v~f  363 (524)
T 2j04_B          350 ------------------------------------------------------------------VSRFRGSNLVPVVY  363 (524)
T ss_dssp             ------------------------------------------------------------------EEECSCCSCCCEEE
T ss_pred             ------------------------------------------------------------------ccccccCcccceEe
Confidence                                                                              1232  24788999


Q ss_pred             ccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeeccccc
Q 013545          313 TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE  392 (441)
Q Consensus       313 s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~  392 (441)
                      +|++..+++++.|++|++||+.++..                                             +.++.+|.+
T Consensus       364 sp~~~~l~s~~~d~tv~lwd~~~~~~---------------------------------------------~~~l~gH~~  398 (524)
T 2j04_B          364 CPQIYSYIYSDGASSLRAVPSRAAFA---------------------------------------------VHPLVSRET  398 (524)
T ss_dssp             ETTTTEEEEECSSSEEEEEETTCTTC---------------------------------------------CEEEEECSS
T ss_pred             CCCcCeEEEeCCCCcEEEEECccccc---------------------------------------------ceeeecCCC
Confidence            99999999999999999999876431                                             234567999


Q ss_pred             ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          393 YVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       393 ~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      .|++|+|||+|++|+||+.|++|++|++.....
T Consensus       399 ~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~  431 (524)
T 2j04_B          399 TITAIGVSRLHPMVLAGSADGSLIITNAARRLL  431 (524)
T ss_dssp             CEEEEECCSSCCBCEEEETTTEEECCBSCSSTT
T ss_pred             ceEEEEeCCCCCeEEEEECCCEEEEEechHhhc
Confidence            999999999999999999999999999876533

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.6e-33  Score=260.97  Aligned_cols=253  Identities=22%  Similarity=0.419  Sum_probs=208.4

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..+|...|.++.|+| ++.+|++|+.|++|++||+.+++....+. +...+..+.+++++   .+|++++.|+.|++||+
T Consensus        19 ~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEET
T ss_pred             EcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC---CEEEEECCCCEEEEEEC
Confidence            458999999999987 78899999999999999999988877665 34568888998854   48999999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ++++.+..+.+|...|.++.|+|+++ +|++|+.|++|++||++++++...+                            
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------  145 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTL----------------------------  145 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEE----------------------------
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEe----------------------------
Confidence            99999999999999999999999987 5799999999999999876543322                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                 ..|..+|.+++|+|++.+|++++.|++|++||+.+++
T Consensus       146 -------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          146 -------------------------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             -------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             -------------------------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence                                                       2466789999999999999999999999999999875


Q ss_pred             ceeeeeeeEEecc-CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEE--EE-cCCCCeEEEeecC
Q 013545          338 NTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCC--CF-SSQDQELYTGGND  412 (441)
Q Consensus       338 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v--~f-spd~~~l~s~s~D  412 (441)
                      ...    ...... .....+++++++..+++++. +.+++||+.+++.+..+.+|...+.++  .| .+++++|++|+.|
T Consensus       183 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  258 (312)
T 4ery_A          183 CLK----TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED  258 (312)
T ss_dssp             EEE----EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred             eee----EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence            321    111112 23445788999998887755 689999999999999999998764432  33 4678899999999


Q ss_pred             CcEEEeCCCCCCCCCccCC
Q 013545          413 RQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       413 ~~i~vW~~~~~~~~~~~~~  431 (441)
                      ++|++|++.++.......|
T Consensus       259 g~i~vwd~~~~~~~~~~~~  277 (312)
T 4ery_A          259 NLVYIWNLQTKEIVQKLQG  277 (312)
T ss_dssp             SCEEEEETTTCCEEEEECC
T ss_pred             CEEEEEECCCchhhhhhhc
Confidence            9999999988775544433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-33  Score=273.21  Aligned_cols=254  Identities=20%  Similarity=0.334  Sum_probs=208.1

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..||.+.|.++.|+| ++.+|+|||.|++|++||+.+++.+..+..+ ..+..++++|++   .+|++|+.|+.|++||+
T Consensus        62 l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g---~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG---QSVACGGLDSACSIFNL  137 (380)
T ss_dssp             ECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS---SEEEECCSSSCCEEEEC
T ss_pred             ccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC---CEEEEeeCCCcEEEEEC
Confidence            458999999999998 7889999999999999999999988877653 457778888754   58999999999999999


Q ss_pred             CCCc-------eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          178 ASGA-------ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       178 ~~~~-------~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      .+..       ....+.+|.+.|.++.|+|++...|++|+.|++|++||++++.++..+...                  
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~------------------  199 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE------------------  199 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC------------------
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc------------------
Confidence            7542       345688999999999999986656899999999999999987655443110                  


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIR  329 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~  329 (441)
                                                                      ...+|...|.+++|+| ++.+|++|+.|++|+
T Consensus       200 ------------------------------------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          200 ------------------------------------------------FPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             ------------------------------------------------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             ------------------------------------------------cCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence                                                            0135778899999987 889999999999999


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccccc-------ceEEEEEcC
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-------YVNCCCFSS  401 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~-------~v~~v~fsp  401 (441)
                      +||+.......   .....+......++++|++..+++++. +.+++||+.+++.+..+..|..       .|.+++|+|
T Consensus       232 ~wd~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  308 (380)
T 3iz6_a          232 LWDLRITSRAV---RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI  308 (380)
T ss_dssp             EEETTTTCCCC---EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred             EEECCCCCcce---EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence            99997543221   222334566778999999999888866 6899999999998888766543       489999999


Q ss_pred             CCCeEEEeecCCcEEEeCCCCCCC
Q 013545          402 QDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       402 d~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +|++|++|+.|+.|++||..++..
T Consensus       309 ~g~~l~~g~~dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          309 SGRLLFAGYSNGDCYVWDTLLAEM  332 (380)
T ss_dssp             SSSEEEEECTTSCEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCEEEEECCCCce
Confidence            999999999999999999876653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=269.75  Aligned_cols=261  Identities=19%  Similarity=0.323  Sum_probs=204.8

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-C
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-D  115 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~  115 (441)
                      .++.+|.+.|++++|+| ++++|++|+.||+|+|||+.....          ..+     ....+|...|.++.|++. +
T Consensus         5 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~----------~~~-----~~~~~h~~~v~~~~~~~~~~   68 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETH----------KLI-----DTLTGHEGPVWRVDWAHPKF   68 (379)
T ss_dssp             CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE----------EEE-----EEECCCSSCEEEEEECCGGG
T ss_pred             EEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcc----------eee-----eEecCCCCcEEEEEeCCCCC
Confidence            45679999999999997 578999999999999999863321          001     123479999999999763 3


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeeecCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHR  190 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l~~h~  190 (441)
                      +.+|++|+.|++|++||+.+++  .+..+. +...+.++.+++... ..+|++++.|+.|++||+.++.  ....+.+|.
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCC-CCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence            7899999999999999999887  444444 456788899988621 3479999999999999999874  345677999


Q ss_pred             CCeEEEEEec-------------CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          191 DGIMTVEWST-------------SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       191 ~~v~~v~fsp-------------~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ..|.+++|+|             ++. +|++++.|+.|++||++.+.....+                            
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------  198 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVL----------------------------  198 (379)
T ss_dssp             TCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEE----------------------------
T ss_pred             CceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceee----------------------------
Confidence            9999999999             465 6789999999999999754311100                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC---CCEEEEeecCCcEEEeeCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~D~~i~~wd~~  334 (441)
                                                             .....+|...|.+++|+|+   +.+|++++.|++|++||+.
T Consensus       199 ---------------------------------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          199 ---------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ---------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ---------------------------------------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                                                   0012357788999999999   8999999999999999998


Q ss_pred             CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545          335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                      ++.....                                        ..+.....|...|++++|+||+++|++++.|+.
T Consensus       240 ~~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  279 (379)
T 3jrp_A          240 NEQGPWK----------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  279 (379)
T ss_dssp             STTSCCE----------------------------------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred             CCCccce----------------------------------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence            7542110                                        001122448889999999999999999999999


Q ss_pred             EEEeCCCC
Q 013545          415 ILVWCPSR  422 (441)
Q Consensus       415 i~vW~~~~  422 (441)
                      |++|++..
T Consensus       280 i~iw~~~~  287 (379)
T 3jrp_A          280 VTLWKENL  287 (379)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeCCC
Confidence            99999873

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-33  Score=265.47  Aligned_cols=250  Identities=18%  Similarity=0.239  Sum_probs=199.5

Q ss_pred             ccCccc-ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEE----ecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545           99 EHGHKY-AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus        99 ~~~h~~-~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      ..+|.. .|.+++|+| ++.+||||+.|++|+|||+.++......    .+.+.+.+++++|++   .+|++|+.|+.|+
T Consensus        11 ~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---~~l~s~s~D~~v~   86 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG---NYLASASFDATTC   86 (345)
T ss_dssp             ECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS---SEEEEEETTSCEE
T ss_pred             ecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC---CEEEEEECCCcEE
Confidence            457887 899999987 7899999999999999999887654322    234668899999864   4899999999999


Q ss_pred             EEECCCCc--eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          174 LCDIASGA--ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       174 vwdl~~~~--~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      +||++++.  ++..+.+|...|.+++|+|+++ +|++|+.|++|++||++.+.....+                      
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~----------------------  143 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECV----------------------  143 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEE----------------------
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEE----------------------
Confidence            99998774  5678999999999999999987 5799999999999998754211110                      


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  331 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w  331 (441)
                                                                    ....+|...|.+++|+|++.+|++|+.|++|++|
T Consensus       144 ----------------------------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w  177 (345)
T 3fm0_A          144 ----------------------------------------------SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY  177 (345)
T ss_dssp             ----------------------------------------------EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred             ----------------------------------------------EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence                                                          0123577889999999999999999999999999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCC---------------ceEeeecc-cccce
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG---------------KTCLTFRG-HYEYV  394 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~---------------~~~~~l~g-h~~~v  394 (441)
                      |+.+++..  .......+......++++|++..+++++. +.+++|+....               +++.++.+ |...|
T Consensus       178 ~~~~~~~~--~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  255 (345)
T 3fm0_A          178 REEEDDWV--CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI  255 (345)
T ss_dssp             EEETTEEE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred             EecCCCEE--EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence            98765421  12233334556678899999998888765 68999997432               23445665 88999


Q ss_pred             EEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          395 NCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       395 ~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      .+++|+|++..|++++.|++|++|+....
T Consensus       256 ~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          256 YDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             EEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            99999999999999999999999987654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3e-33  Score=263.99  Aligned_cols=284  Identities=18%  Similarity=0.250  Sum_probs=225.9

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      |.+.|++++|+| ++++++.+..++.+.+|+.....           ..+      ...+|...|.++.+++ ++.+|++
T Consensus         8 ~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~h~~~v~~~~~~~-~~~~l~~   68 (337)
T 1gxr_A            8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHA-----------RQI------NTLNHGEVVCAVTISN-PTRHVYT   68 (337)
T ss_dssp             EEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEE-----------EEE------EEECCSSCCCEEEECS-SSSEEEE
T ss_pred             cCCceeEEEECC-CCCEEEeecCCCcEeccccCCcc-----------ccc------eeccCCCceEEEEEec-CCcEEEE
Confidence            357899999997 57889888888877666433211           001      1127999999999987 7889999


Q ss_pred             EeCCCcEEEEECCCCeE---EEEE---ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeeecCCCCCe
Q 013545          122 GSYDHYVKVWDTNCTRV---VMNF---KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHRDGI  193 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l~~h~~~v  193 (441)
                      ++ |++|++||+.++..   +..+   .+...+..+.++++.   .+|++++.|+.|++||+++++  ....+.+|...|
T Consensus        69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS---SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC---CEEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            98 99999999987642   2333   245678888998854   478899999999999999987  566788999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .+++|+|+++ .|++++.||.|++||+++++....+                                            
T Consensus       145 ~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~--------------------------------------------  179 (337)
T 1gxr_A          145 YALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQF--------------------------------------------  179 (337)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE--------------------------------------------
T ss_pred             EEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeee--------------------------------------------
Confidence            9999999987 5789999999999999875433222                                            


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                 ..|...|.+++|+|++.+|++++.|+.|++||+.+++...    .. ......
T Consensus       180 ---------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----~~-~~~~~v  227 (337)
T 1gxr_A          180 ---------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ----QH-DFTSQI  227 (337)
T ss_dssp             ---------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EE-ECSSCE
T ss_pred             ---------------------------ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe----ee-cCCCce
Confidence                                       2466789999999999999999999999999999875321    11 124456


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ..+++++++..+++++. +.+++||+.+++. ..+.+|..+|.+++|+|++++|++++.|+.|++|++.++...
T Consensus       228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            67888999998887764 7899999988765 467889999999999999999999999999999999877643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1e-32  Score=263.79  Aligned_cols=251  Identities=20%  Similarity=0.301  Sum_probs=206.3

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..+|...|.++.|+| ++.+|+|||.|++|++||..++.....+..+ ..+..+.++|++   .+|++|+.|+.+++|++
T Consensus        60 l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g---~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG---CAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS---SEEEEESTTSEEEEEEC
T ss_pred             ecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC---CEEEEeeCCCCEEEEEE
Confidence            358999999999987 7889999999999999999988887776653 457788888864   48999999999999998


Q ss_pred             CCC------ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          178 ASG------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       178 ~~~------~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      ...      .....+.+|...|.++.|+|++. .|++++.|++|++||+++++++..+                      
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~----------------------  192 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSF----------------------  192 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEE----------------------
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEE----------------------
Confidence            654      23466789999999999999987 4789999999999999876544332                      


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--CCCEEEEeecCCcEE
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSDSRIR  329 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~~i~  329 (441)
                                                                       .+|...|.+++|+|  ++.+|++|+.|++|+
T Consensus       193 -------------------------------------------------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~  223 (354)
T 2pbi_B          193 -------------------------------------------------HGHGADVLCLDLAPSETGNTFVSGGCDKKAM  223 (354)
T ss_dssp             -------------------------------------------------ECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred             -------------------------------------------------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence                                                             35777899999987  578999999999999


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc--ccceEEEEEcCCCCeE
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH--YEYVNCCCFSSQDQEL  406 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh--~~~v~~v~fspd~~~l  406 (441)
                      +||+.+++..    .....+......++++|++..+++++. ..+++||+.+++.+..+..+  ...+.+++|+|++++|
T Consensus       224 ~wd~~~~~~~----~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          224 VWDMRSGQCV----QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             EEETTTCCEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             EEECCCCcEE----EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            9999987632    222334556677899999998888765 68999999988877766544  3578999999999999


Q ss_pred             EEeecCCcEEEeCCCCCCCCCcc
Q 013545          407 YTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       407 ~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      ++|+.|++|++|++.++......
T Consensus       300 ~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          300 FAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEE
T ss_pred             EEEECCCcEEEEECCCCceEEEE
Confidence            99999999999999877644333

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.5e-33  Score=268.91  Aligned_cols=249  Identities=24%  Similarity=0.417  Sum_probs=201.4

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-------------------eeEEEeeccCCCCcc
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-------------------KVYRTAMSPLAASHM  161 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~  161 (441)
                      +|...|.++.|+| ++.+||+|+ |+++++|++.+++.+..+....                   .+.++.|++++   .
T Consensus        62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg---~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG---K  136 (393)
T ss_dssp             ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS---S
T ss_pred             CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC---C
Confidence            6999999999987 788999976 7899999999998876654321                   26778888754   4


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCC
Q 013545          162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPP  241 (441)
Q Consensus       162 ~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~  241 (441)
                      +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+++ .|++++.|++|++||++++.+...+            
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~------------  203 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTL------------  203 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEE------------
Confidence            899999999999999999999999999999999999999998 5789999999999999876543322            


Q ss_pred             cccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEE
Q 013545          242 LLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLL  320 (441)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~  320 (441)
                                                                                  .+...+.+++|+| ++.+|+
T Consensus       204 ------------------------------------------------------------~~~~~v~~~~~~~~~~~~l~  223 (393)
T 1erj_A          204 ------------------------------------------------------------SIEDGVTTVAVSPGDGKYIA  223 (393)
T ss_dssp             ------------------------------------------------------------ECSSCEEEEEECSTTCCEEE
T ss_pred             ------------------------------------------------------------EcCCCcEEEEEECCCCCEEE
Confidence                                                                        1234588999999 899999


Q ss_pred             EeecCCcEEEeeCCCCCceeeeeee----EEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccC------------Cce
Q 013545          321 SAGSDSRIRLWDVESGRNTLVNFET----VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWS------------GKT  383 (441)
Q Consensus       321 sgs~D~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~------------~~~  383 (441)
                      +|+.|++|++||+.+++.... +..    ...+......+++++++..+++++. +.+++||+.+            +.+
T Consensus       224 ~~s~d~~v~iwd~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~  302 (393)
T 1erj_A          224 AGSLDRAVRVWDSETGFLVER-LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  302 (393)
T ss_dssp             EEETTSCEEEEETTTCCEEEE-EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred             EEcCCCcEEEEECCCCcEEEe-ecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence            999999999999988753211 110    0123345667899999998888765 6899999865            345


Q ss_pred             EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545          384 CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       384 ~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                      ..++.+|...|.+++|+|++++|+||+.|++|++|++.++.....
T Consensus       303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~  347 (393)
T 1erj_A          303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM  347 (393)
T ss_dssp             EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            668899999999999999999999999999999999988764433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=262.11  Aligned_cols=295  Identities=12%  Similarity=0.101  Sum_probs=225.4

Q ss_pred             eeeecCCCCceeEEEccCCC--CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545           36 KEIVSPHKGSINSLQVDLTE--ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~  113 (441)
                      ..++.+|.+.|++++|+|++  +++|++|+.||+|+|||+.+...           .+    .....+|...|.++.|+|
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~----~~~~~~h~~~v~~~~~~~   96 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TI----PKAQQMHTGPVLDVCWSD   96 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EE----EEEEEECSSCEEEEEECT
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------ee----EEEeccccCCEEEEEECc
Confidence            34567999999999999864  68999999999999999976221           00    011247999999999987


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (441)
Q Consensus       114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v  193 (441)
                       ++.+|++++.|++|++||+.+++.+....+.+.+.++.+.+.. +..+|++++.|+.|++||+++++.+..+..|. .+
T Consensus        97 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~  173 (368)
T 3mmy_A           97 -DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC  173 (368)
T ss_dssp             -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred             -CCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence             7889999999999999999999988877788889999984322 34578999999999999999999988888765 67


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .++.+.++   .+++++.|+.+++||++.........                                           
T Consensus       174 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~-------------------------------------------  207 (368)
T 3mmy_A          174 YCADVIYP---MAVVATAERGLIVYQLENQPSEFRRI-------------------------------------------  207 (368)
T ss_dssp             EEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEEC-------------------------------------------
T ss_pred             eEEEecCC---eeEEEeCCCcEEEEEeccccchhhhc-------------------------------------------
Confidence            77777754   46778899999999997542111000                                           


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE----EEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY----LLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  349 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~----l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~  349 (441)
                                                ...+...+..+++.++...    +++++.|+.|++||+........ ......+
T Consensus       208 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~  260 (368)
T 3mmy_A          208 --------------------------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD-NFTFKCH  260 (368)
T ss_dssp             --------------------------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH-SEEEECS
T ss_pred             --------------------------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc-ceeeeee
Confidence                                      0011123455556555544    99999999999999987642100 0111111


Q ss_pred             cC------------cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545          350 TS------------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL  416 (441)
Q Consensus       350 ~~------------~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~  416 (441)
                      ..            ....+++++++.++++++. +.+++||+.+++.+.++.+|..+|.+++|+|||++|++|+.|+..+
T Consensus       261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~  340 (368)
T 3mmy_A          261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK  340 (368)
T ss_dssp             EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred             ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence            11            3567889999988888754 6899999999999999999999999999999999999999998666


Q ss_pred             EeCCC
Q 013545          417 VWCPS  421 (441)
Q Consensus       417 vW~~~  421 (441)
                      .|+..
T Consensus       341 ~~~~~  345 (368)
T 3mmy_A          341 GHEFY  345 (368)
T ss_dssp             CGGGC
T ss_pred             ccccc
Confidence            66543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.3e-32  Score=291.06  Aligned_cols=292  Identities=17%  Similarity=0.286  Sum_probs=238.6

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++...                 ....+|...|.++.|+| +
T Consensus         6 ~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~   66 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEV-----------------RSIQVTETPVRAGKFIA-R   66 (814)
T ss_dssp             EEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEEEG-G
T ss_pred             ceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceE-----------------EEEecCCCcEEEEEEeC-C
Confidence            356789999999999997 5789999999999999999765321                 11237889999999988 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCe
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI  193 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v  193 (441)
                      +.+|++|+.|++|++||+.+++.+..+. +.+.+..+.+++++   ..|++++.|+.|++||++++ .....+.+|...|
T Consensus        67 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v  143 (814)
T 3mkq_A           67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV  143 (814)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC---CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence            8899999999999999999999888776 56778899999864   47899999999999999987 6678889999999


Q ss_pred             EEEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          194 MTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       194 ~~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      .+++|+| ++. .|++++.||+|++||++.+.....+                                           
T Consensus       144 ~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~-------------------------------------------  179 (814)
T 3mkq_A          144 MCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTL-------------------------------------------  179 (814)
T ss_dssp             EEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEE-------------------------------------------
T ss_pred             EEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEE-------------------------------------------
Confidence            9999999 554 6899999999999998754321111                                           


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                 ...|...+..++|+|  ++.+|++++.|++|++||+.+++.    ......+.
T Consensus       180 ---------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~  228 (814)
T 3mkq_A          180 ---------------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHM  228 (814)
T ss_dssp             ---------------------------ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE----EEEEECCS
T ss_pred             ---------------------------ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE----EEEEcCCC
Confidence                                       012336688999999  999999999999999999987653    22233344


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCe-EEEeecCCcEEEeCCCCCC
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~~~~  424 (441)
                      .....+++++++..+++++. +.+++||+.+++....+..|...|++++|+|+++. +++++.|+.+.+|+.....
T Consensus       229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence            55667889999998888765 78999999999999999999999999999999874 3455557778888876543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.3e-32  Score=267.38  Aligned_cols=278  Identities=21%  Similarity=0.343  Sum_probs=221.7

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++|+   +++|++|+.||+|++||+.+++..                 ....+|...|.++.+.   
T Consensus       152 ~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~---  208 (445)
T 2ovr_B          152 LRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECI-----------------HTLYGHTSTVRCMHLH---  208 (445)
T ss_dssp             EEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEE---
T ss_pred             EEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEE-----------------EEECCCCCcEEEEEec---
Confidence            34567899999999997   358999999999999999865421                 1234799999988884   


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      ++.+++|+.|++|++||+.+++.+..+.. .+.+.++.+.     ..++++|+.|+.|++||+++++.+..+.+|...|.
T Consensus       209 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  283 (445)
T 2ovr_B          209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-----GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY  283 (445)
T ss_dssp             TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-----SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC-----CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE
Confidence            56899999999999999999998877764 4556666662     34788999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      ++.|  ++. .+++++.|++|++||++++++...+                                             
T Consensus       284 ~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---------------------------------------------  315 (445)
T 2ovr_B          284 SLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTL---------------------------------------------  315 (445)
T ss_dssp             EEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEE---------------------------------------------
T ss_pred             EEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEE---------------------------------------------
Confidence            9999  455 5789999999999999876554332                                             


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe---ccC
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL---QTS  351 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~---~~~  351 (441)
                                                .+|...+.++.+  ++.+|++|+.|++|++||+.+++...    ....   +..
T Consensus       316 --------------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~  363 (445)
T 2ovr_B          316 --------------------------TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQ----TLQGPNKHQS  363 (445)
T ss_dssp             --------------------------CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE----EECSTTSCSS
T ss_pred             --------------------------cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEE----EEccCCCCCC
Confidence                                      234556777666  56799999999999999998875321    1111   222


Q ss_pred             cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee-----cccccceEEEEEcCCCCeEEEeecCCc----EEEeCCC
Q 013545          352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-----RGHYEYVNCCCFSSQDQELYTGGNDRQ----ILVWCPS  421 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l-----~gh~~~v~~v~fspd~~~l~s~s~D~~----i~vW~~~  421 (441)
                      ....+++  ++..+++++. +.+++||+.+++.+..+     .+|.+.|++++|+|++.+|++|+.|++    |.|||..
T Consensus       364 ~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          364 AVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             CEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            3334444  4667777654 78999999999998888     588999999999999999999999998    9999987


Q ss_pred             CC
Q 013545          422 RH  423 (441)
Q Consensus       422 ~~  423 (441)
                      ..
T Consensus       442 ~~  443 (445)
T 2ovr_B          442 VD  443 (445)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-32  Score=258.67  Aligned_cols=246  Identities=19%  Similarity=0.304  Sum_probs=200.6

Q ss_pred             ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-----CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCC
Q 013545           97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-----TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDV  170 (441)
Q Consensus        97 ~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~  170 (441)
                      ....||++.|.++++++.++.+|+|||.|++|++||+..     +.++..+. +...+..+.+++++   .+|++|+.|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg---~~l~s~s~D~   87 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---AYALSASWDK   87 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---SEEEEEETTS
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---CEEEEEeCCC
Confidence            345699999999999986668999999999999999853     22344454 34568888888854   4899999999


Q ss_pred             cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      .|++||+++++.+..+.+|...|.+++|+|++. +|++|+.|++|++||++.. ++..                      
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~-~~~~----------------------  143 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ-CLAT----------------------  143 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC-EEEE----------------------
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eEEE----------------------
Confidence            999999999999999999999999999999987 5799999999999998632 2111                      


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC------CCEEEEeec
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED------GMYLLSAGS  324 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------g~~l~sgs~  324 (441)
                                                                       ..+|...|.+++|+|+      +.+|++++.
T Consensus       144 -------------------------------------------------~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~  174 (319)
T 3frx_A          144 -------------------------------------------------LLGHNDWVSQVRVVPNEKADDDSVTIISAGN  174 (319)
T ss_dssp             -------------------------------------------------ECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred             -------------------------------------------------EeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence                                                             2356778999999985      458999999


Q ss_pred             CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC
Q 013545          325 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD  403 (441)
Q Consensus       325 D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~  403 (441)
                      |++|++||+.+.+..    .....+......++++|++.++++++. +.+++||+.+++.+.++..| .+|.+++|+|++
T Consensus       175 d~~i~~wd~~~~~~~----~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~  249 (319)
T 3frx_A          175 DKMVKAWNLNQFQIE----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR  249 (319)
T ss_dssp             TSCEEEEETTTTEEE----EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS
T ss_pred             CCEEEEEECCcchhh----eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC
Confidence            999999999876421    122234456677899999999888765 68999999999999998865 679999999999


Q ss_pred             CeEEEeecCCcEEEeCCCCCC
Q 013545          404 QELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       404 ~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      .+|++++. ..|++|+++...
T Consensus       250 ~~la~~~~-~~i~v~~~~~~~  269 (319)
T 3frx_A          250 YWLAAATA-TGIKVFSLDPQY  269 (319)
T ss_dssp             SEEEEEET-TEEEEEEETTEE
T ss_pred             CEEEEEcC-CCcEEEEeCcCe
Confidence            99998775 459999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=259.85  Aligned_cols=247  Identities=16%  Similarity=0.175  Sum_probs=187.5

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC--eEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      ..+|+..|.++.+++ +  +||||+.|++|++||+..+  ..+..+.   +.+.+.++.++|++   .+|++|+.|+.|+
T Consensus        10 ~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~las~s~D~~v~   83 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---SLLAAGSFDSTVS   83 (330)
T ss_dssp             EECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS---SEEEEEETTSCEE
T ss_pred             eccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC---CEEEEEeCCCcEE
Confidence            358999999999975 2  9999999999999999875  3444442   45678999999864   4899999999999


Q ss_pred             EEECCC-------CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccc
Q 013545          174 LCDIAS-------GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKR  245 (441)
Q Consensus       174 vwdl~~-------~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~  245 (441)
                      +||++.       .+++..+.+|...|.+++|+|+++ +|++|+.|++|++||++... ....                 
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~-----------------  145 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYEC-----------------  145 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEE-----------------
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEE-----------------
Confidence            999953       345678899999999999999987 57999999999999985321 0000                 


Q ss_pred             cccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC
Q 013545          246 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD  325 (441)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  325 (441)
                                                                         ...+.+|...|++|+|+|++.+|++|+.|
T Consensus       146 ---------------------------------------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  174 (330)
T 2hes_X          146 ---------------------------------------------------ISVLQEHSQDVKHVIWHPSEALLASSSYD  174 (330)
T ss_dssp             ---------------------------------------------------EEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ---------------------------------------------------EEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence                                                               00124678889999999999999999999


Q ss_pred             CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC--CcEEEEeCC-CceEEEEccCC--------ceEeeecc-cccc
Q 013545          326 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD--PAVVFVPCM-TAVKAFDIWSG--------KTCLTFRG-HYEY  393 (441)
Q Consensus       326 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~wd~~~~--------~~~~~l~g-h~~~  393 (441)
                      ++|++||+.++..  .....+..+......++++++  +..+++++. ..+++||+.++        .....+.+ |...
T Consensus       175 ~~i~iW~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~  252 (330)
T 2hes_X          175 DTVRIWKDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ  252 (330)
T ss_dssp             SCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred             CeEEEEECCCCCe--eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence            9999999876421  112233334455667888887  556666654 78999998664        34556665 9999


Q ss_pred             eEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          394 VNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       394 v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      |.+++|+|++ +|++++.|++|+||+..++
T Consensus       253 v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          253 VYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             eEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence            9999999765 8999999999999998654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=270.61  Aligned_cols=303  Identities=12%  Similarity=0.266  Sum_probs=214.2

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc------------cceeE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK------------YAISS  108 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V~~  108 (441)
                      .|.+.|++++|+| ++++||+|+.||.|+|||+.++......     ....+.. .....+|.            ..|.+
T Consensus        26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~-----~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~V~~   98 (447)
T 3dw8_B           26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSH-----SRGEYNV-YSTFQSHEPEFDYLKSLEIEEKINK   98 (447)
T ss_dssp             CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CC-----CCCCEEE-EEEEECCCCEEEGGGTEEECCCCCE
T ss_pred             cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcc-----cccceeE-ecccccccccccccccccccCceEE
Confidence            5789999999997 6789999999999999999765421000     0000000 01234787            88999


Q ss_pred             EEEeeCCC-CEEEEEeCCCcEEEEECCCCeEE---------------------------------------EEE--ecCC
Q 013545          109 AIWYPVDT-GLFVTGSYDHYVKVWDTNCTRVV---------------------------------------MNF--KMPG  146 (441)
Q Consensus       109 ~~~~~~~~-~~l~sgs~D~~i~iWd~~~~~~~---------------------------------------~~~--~~~~  146 (441)
                      +.|+|... .+|++++.|++|++||+.++...                                       ..+  .+..
T Consensus        99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B           99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            99998422 69999999999999998764431                                       111  2345


Q ss_pred             eeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceee-------eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEE
Q 013545          147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQ-------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW  218 (441)
Q Consensus       147 ~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~-------~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iW  218 (441)
                      .+.++.+++++   .+|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++..+|++|+.||+|++|
T Consensus       179 ~v~~~~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          179 HINSISINSDY---ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             CCCEEEECTTS---SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             ceEEEEEcCCC---CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            67888888853   478888 799999999984 44443       3678999999999999984478999999999999


Q ss_pred             EcCCCce----eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcc
Q 013545          219 DIRRAGC----FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML  294 (441)
Q Consensus       219 D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (441)
                      |++++.+    ...+......                                                           
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  275 (447)
T 3dw8_B          255 DMRASALCDRHSKLFEEPEDP-----------------------------------------------------------  275 (447)
T ss_dssp             ETTTCSSSCTTCEEECCC--------------------------------------------------------------
T ss_pred             ECcCCccccceeeEeccCCCc-----------------------------------------------------------
Confidence            9987643    2222110000                                                           


Q ss_pred             cccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC-CCceeeeeeeEEeccCc---------------ceEEEe
Q 013545          295 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES-GRNTLVNFETVRLQTSK---------------PIQLAT  358 (441)
Q Consensus       295 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~  358 (441)
                      .......+|.+.|.+++|+|+|.+|++++. ++|++||+.+ ++.. ..+   ..+...               ...+++
T Consensus       276 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~-~~~---~~~~~~~~~l~~~~~~~~i~~~~~~~~  350 (447)
T 3dw8_B          276 SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV-ETY---QVHEYLRSKLCSLYENDCIFDKFECCW  350 (447)
T ss_dssp             --CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS-CCE---ESCGGGTTTHHHHHHTSGGGCCCCEEE
T ss_pred             cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc-cee---eccccccccccccccccccccceEEEE
Confidence            000112356678999999999999999999 9999999986 4321 111   111110               123789


Q ss_pred             eCCCcEEEEeCC-CceEEEEccCCceEeeec---------------------------------ccccceEEEEEcCCCC
Q 013545          359 TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFR---------------------------------GHYEYVNCCCFSSQDQ  404 (441)
Q Consensus       359 ~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~---------------------------------gh~~~v~~v~fspd~~  404 (441)
                      ++++..+++++. +.+++||+.+++.+. +.                                 .+...|.+++|+|++.
T Consensus       351 s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~  429 (447)
T 3dw8_B          351 NGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN  429 (447)
T ss_dssp             CTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS
T ss_pred             CCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCC
Confidence            999998888765 689999999887653 22                                 2345789999999999


Q ss_pred             eEEEeecCCcEEEeCC
Q 013545          405 ELYTGGNDRQILVWCP  420 (441)
Q Consensus       405 ~l~s~s~D~~i~vW~~  420 (441)
                      +||+++.|+ +.+|..
T Consensus       430 ~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          430 IIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EEEEECSSC-EEEEEC
T ss_pred             EEEEEecce-eeeecc
Confidence            999998776 677754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.9e-33  Score=268.96  Aligned_cols=291  Identities=18%  Similarity=0.224  Sum_probs=225.7

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      .....++++|....++++++.||.|+|||+.......        .     ......+|...|.++.|+|.++.+|++|+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~--------~-----~~~~~~~h~~~V~~~~~~p~~~~~l~s~s  101 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD--------K-----NVPLVCGHTAPVLDIAWCPHNDNVIASGS  101 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC--------T-----TCCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC--------C-----CCceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence            4455688886544456678999999999986432110        0     01224589999999999986788999999


Q ss_pred             CCCcEEEEECCCC-------eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee--cCCCCCe
Q 013545          124 YDHYVKVWDTNCT-------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--SGHRDGI  193 (441)
Q Consensus       124 ~D~~i~iWd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l--~~h~~~v  193 (441)
                      .|++|++||+.++       .++..+. +.+.+..+.+++.+  ..+|++++.|+.|++||+++++.+..+  .+|...|
T Consensus       102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            9999999999887       4455554 45678899999864  258999999999999999999999999  8999999


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      .+++|+|+++. |++++.|+.|++||++++.+...+.                                           
T Consensus       180 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------------------------  215 (402)
T 2aq5_A          180 YSVDWSRDGAL-ICTSCRDKRVRVIEPRKGTVVAEKD-------------------------------------------  215 (402)
T ss_dssp             EEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEEEE-------------------------------------------
T ss_pred             EEEEECCCCCE-EEEEecCCcEEEEeCCCCceeeeec-------------------------------------------
Confidence            99999999875 7899999999999998765443321                                           


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEe---ecCCcEEEeeCCCCCceeeeeeeEEe-
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSA---GSDSRIRLWDVESGRNTLVNFETVRL-  348 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sg---s~D~~i~~wd~~~~~~~~~~~~~~~~-  348 (441)
                                                 .+|.+. +.+++|+|++.+|++|   +.|++|++||+.+.+....   .... 
T Consensus       216 ---------------------------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~---~~~~~  265 (402)
T 2aq5_A          216 ---------------------------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS---LQELD  265 (402)
T ss_dssp             ---------------------------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE---EEECC
T ss_pred             ---------------------------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce---EEecc
Confidence                                       123333 7889999999999999   7999999999998654221   1111 


Q ss_pred             ccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCce-Eeeeccc--ccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          349 QTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKT-CLTFRGH--YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~-~~~l~gh--~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      .......+++++++..+++.+  .+.+++||+.+++. +..+..|  ..+|.+++|+|++.++++  .|+.+++|++.++
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence            234567789999999886543  47899999998874 5555554  589999999999999876  4669999999875


Q ss_pred             CC
Q 013545          424 IS  425 (441)
Q Consensus       424 ~~  425 (441)
                      ..
T Consensus       344 ~~  345 (402)
T 2aq5_A          344 KC  345 (402)
T ss_dssp             EE
T ss_pred             cE
Confidence            43

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-31  Score=255.44  Aligned_cols=249  Identities=18%  Similarity=0.252  Sum_probs=193.7

Q ss_pred             cccCcccceeEEEE-----eeCCCCEEEEEeCCCcEEEEECCCC-------eEEEEEe-cCCeeEEEeeccCCCCccEEE
Q 013545           98 HEHGHKYAISSAIW-----YPVDTGLFVTGSYDHYVKVWDTNCT-------RVVMNFK-MPGKVYRTAMSPLAASHMLIA  164 (441)
Q Consensus        98 ~~~~h~~~V~~~~~-----~~~~~~~l~sgs~D~~i~iWd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~la  164 (441)
                      .+.||+..|.++.+     ++.++.+|+||+.|++|++||+..+       .+...+. +...+.++.+++..   .+++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---~~l~   92 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN---CFAI   92 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---TEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---CEEE
Confidence            34689999999998     6658899999999999999998753       2333333 34568888888753   5899


Q ss_pred             EEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccc
Q 013545          165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK  244 (441)
Q Consensus       165 s~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~  244 (441)
                      +|+.|+.|++||+++++.+..+.+|...|.+++|+|+++ .|++++.|++|++||++.. +....               
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~-~~~~~---------------  155 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE-CKFSS---------------  155 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC-EEEEC---------------
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC-ceeee---------------
Confidence            999999999999999999999999999999999999988 5789999999999998632 11100               


Q ss_pred             ccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--------
Q 013545          245 RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--------  316 (441)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--------  316 (441)
                                                                           .....|...|.+++|+|++        
T Consensus       156 -----------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~  182 (343)
T 2xzm_R          156 -----------------------------------------------------AEKENHSDWVSCVRYSPIMKSANKVQP  182 (343)
T ss_dssp             -----------------------------------------------------CTTTSCSSCEEEEEECCCCCSCSCCCS
T ss_pred             -----------------------------------------------------ecccCCCceeeeeeeccccccccccCC
Confidence                                                                 0012466779999999987        


Q ss_pred             --CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCC-ceEeeeccccc
Q 013545          317 --MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG-KTCLTFRGHYE  392 (441)
Q Consensus       317 --~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~-~~~~~l~gh~~  392 (441)
                        .+|++++.|++|++||... +    .......+......++++|++.++++++. +.+++||+.+. .....+ .|..
T Consensus       183 ~~~~l~s~~~d~~i~iwd~~~-~----~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~  256 (343)
T 2xzm_R          183 FAPYFASVGWDGRLKVWNTNF-Q----IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGS  256 (343)
T ss_dssp             SCCEEEEEETTSEEEEEETTT-E----EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSS
T ss_pred             CCCEEEEEcCCCEEEEEcCCC-c----eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCC
Confidence              7899999999999999432 1    11233344556778899999999888765 68999999543 333444 3556


Q ss_pred             ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          393 YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       393 ~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      .|.+++|+|++++|+ ++.|+.|++|++.+....
T Consensus       257 ~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          257 TINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             CEEEEEECSSSCEEE-EEESSCEEEEESSSCCSC
T ss_pred             cEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCC
Confidence            799999999998776 556889999999876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8.1e-32  Score=264.37  Aligned_cols=275  Identities=19%  Similarity=0.312  Sum_probs=207.9

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      ..+|.+.|++++|+|.++++|++++.||.|+|||+.+.......  ......+     ....+|...|.++.|++....+
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP--SGECQPD-----LRLRGHQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT--TCCCCCS-----EEEECCSSCCCCEEECTTSTTE
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc--cccCCCc-----EEecCCCCCeEEEEeCCCCCCe
Confidence            45899999999999865779999999999999999753211000  0000111     1224799999999999854449


Q ss_pred             EEEEeCCCcEEEEECCCCeE-------EEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC---ceeeeec
Q 013545          119 FVTGSYDHYVKVWDTNCTRV-------VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLS  187 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~---~~~~~l~  187 (441)
                      |++|+.|++|++||+..+..       ...+ .+.+.+.++.+++..  ..+|++++.|+.|++||++++   +.+..+.
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~--~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~  274 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD  274 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC--TTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC--CCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence            99999999999999987321       2223 245668888988853  458999999999999999987   5677888


Q ss_pred             CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      .|...|.+++|+|+++++|++|+.||+|++||++..+ ++.                                       
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~---------------------------------------  315 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---------------------------------------  315 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---------------------------------------
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE---------------------------------------
Confidence            9999999999999998888999999999999998521 110                                       


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFET  345 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~  345 (441)
                                                      ....|.+.|++|+|+|++. +|++++.|++|++||+......... . 
T Consensus       316 --------------------------------~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-  361 (430)
T 2xyi_A          316 --------------------------------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST-E-  361 (430)
T ss_dssp             --------------------------------EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH-H-
T ss_pred             --------------------------------EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc-c-
Confidence                                            1235778899999999995 6999999999999999863211000 0 


Q ss_pred             EEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEeecCCcEEEeCCCCCC
Q 013545          346 VRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~s~D~~i~vW~~~~~~  424 (441)
                       . ...                           ...+++..+.+|...|.+++|+|+++ +|+|++.|+.|+||++....
T Consensus       362 -~-~~~---------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          362 -D-AED---------------------------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             -H-HHH---------------------------CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             -c-ccc---------------------------CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence             0 000                           01234456688999999999999999 89999999999999997654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.3e-31  Score=270.95  Aligned_cols=295  Identities=17%  Similarity=0.243  Sum_probs=225.1

Q ss_pred             ceeeecCCCCc-eeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEe
Q 013545           35 YKEIVSPHKGS-INSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY  112 (441)
Q Consensus        35 ~~~~~~~H~~~-V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  112 (441)
                      ....+.+|.+. |++++|+|. ++++|++|+.||+|+|||+.++....   .. .. ..    .....+|...|.++.|+
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~-~~-~~----~~~~~~~~~~v~~~~~s  125 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---SV-EV-NV----KSEFQVLAGPISDISWD  125 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---EE-EE-EE----EEEEECCSSCEEEEEEC
T ss_pred             cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---cc-cc-cc----cchhhcccccEEEEEEe
Confidence            34557899999 999999961 47899999999999999996441100   00 00 00    11234688899999998


Q ss_pred             eCCCCEEEEEeCC----CcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545          113 PVDTGLFVTGSYD----HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       113 ~~~~~~l~sgs~D----~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      | ++.+|++++.|    +.|++||  .++.+..+. +.+.+..+.++++.  ..++++++.|+.|++||+++++.+..+.
T Consensus       126 ~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~  200 (615)
T 1pgu_A          126 F-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR--PMRSMTVGDDGSVVFYQGPPFKFSASDR  200 (615)
T ss_dssp             T-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS--SCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred             C-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC--CcEEEEEeCCCcEEEEeCCCcceeeeec
Confidence            7 78899999998    6899998  455555554 34668888888864  2479999999999999999999999999


Q ss_pred             CCCC---CeEEEEEecC-CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          188 GHRD---GIMTVEWSTS-SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       188 ~h~~---~v~~v~fsp~-~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      +|..   .|.+++|+|+ ++ +|++++.|+.|++||++++++...+..                                
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------------------  247 (615)
T 1pgu_A          201 THHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIED--------------------------------  247 (615)
T ss_dssp             SSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCB--------------------------------
T ss_pred             ccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecc--------------------------------
Confidence            9999   9999999999 77 578999999999999987654332200                                


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~  343 (441)
                                                         ....|...|.+++|+ ++.+|++++.|++|++||+.+++...   
T Consensus       248 -----------------------------------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~---  288 (615)
T 1pgu_A          248 -----------------------------------DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ---  288 (615)
T ss_dssp             -----------------------------------TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE---
T ss_pred             -----------------------------------cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE---
Confidence                                               001467789999999 99999999999999999999765321   


Q ss_pred             eeEEec----cCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          344 ETVRLQ----TSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       344 ~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                       .....    ......+.+. ++..+++++ .+.+++||+.+++.+..+.+|.++|.+++| |+   |++++.|+.|++|
T Consensus       289 -~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w  362 (615)
T 1pgu_A          289 -KWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEW  362 (615)
T ss_dssp             -EEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred             -EEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence             11211    1223344444 666666654 478999999999999999999999999999 87   7778888888888


Q ss_pred             CCC
Q 013545          419 CPS  421 (441)
Q Consensus       419 ~~~  421 (441)
                      ++.
T Consensus       363 ~~~  365 (615)
T 1pgu_A          363 SSS  365 (615)
T ss_dssp             TTT
T ss_pred             Ech
Confidence            764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-32  Score=266.95  Aligned_cols=268  Identities=15%  Similarity=0.124  Sum_probs=205.9

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      -...|.+++|+| ||+++||+|.|++|+  |.+.+.                    ...+|...|.++.|+| +|     
T Consensus        14 ~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~--------------------~l~gh~~~v~~V~FsP-dg-----   64 (588)
T 2j04_A           14 FEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAK--------------------DINCNSKNLFHVKEFP-LE-----   64 (588)
T ss_dssp             CSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCS--------------------CCSSBGGGTEEEEEEC-CC-----
T ss_pred             hhccEEEEEECC-CCCEEEEEcCCceee--cccccc--------------------eecCCCccEEEEEECC-CC-----
Confidence            358899999997 688999999999999  754332                    1248999999999998 55     


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC-----CeEEE
Q 013545          122 GSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-----GIMTV  196 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~-----~v~~v  196 (441)
                        .|+++++|+..... +..+.....+..++|+|++   .+||+++.|+.|++||.++  ++..+. |..     .|.++
T Consensus        65 --~~~~~~~~~~~~~~-~~~~~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sv  135 (588)
T 2j04_A           65 --FENKLDFELAQQNG-LLNSQPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCF  135 (588)
T ss_dssp             --CCCTTTTSCCCSSC-SSTTSCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEE
T ss_pred             --CcceEEEEeCCCce-EeecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEE
Confidence              57777777654322 2222335679999999965   4799999999999999655  666677 665     49999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCce-------eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGC-------FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      +|||+|+. |++|+.||+|++||+..++.       +..++.                                      
T Consensus       136 afSPDG~~-LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~--------------------------------------  176 (588)
T 2j04_A          136 EWNPIESS-IVVGNEDGELQFFSIRKNSENTPEFYFESSIRL--------------------------------------  176 (588)
T ss_dssp             EECSSSSC-EEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC--------------------------------------
T ss_pred             EEcCCCCE-EEEEcCCCEEEEEECCCCccccccceeeeeeec--------------------------------------
Confidence            99999985 79999999999999876421       111100                                      


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE-Ee
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-RL  348 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~-~~  348 (441)
                                                   ...+|.++|.+++|+|||  +++++.|++|++||+..+.... ....+ ..
T Consensus       177 -----------------------------~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~-~~~tL~~~  224 (588)
T 2j04_A          177 -----------------------------SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP-VSRMIQNA  224 (588)
T ss_dssp             -----------------------------SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC-CEEEEECC
T ss_pred             -----------------------------ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc-ceeeeccc
Confidence                                         013577899999999999  8889999999999998765210 01112 12


Q ss_pred             ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE--cCCCCeEEEeecCCcEEEeCCC
Q 013545          349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF--SSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f--spd~~~l~s~s~D~~i~vW~~~  421 (441)
                      +......++++  +..+++++.+++++||+.+++......||...|++++|  +||++.|+++++||+ |+|..+
T Consensus       225 h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          225 SRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             ccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            34556777887  57888888889999999988875555589999999999  999999999999999 999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=281.58  Aligned_cols=262  Identities=19%  Similarity=0.323  Sum_probs=202.5

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-C
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-D  115 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~  115 (441)
                      .++.+|.+.|++++|+| ++++|++|+.||+|+|||+.....          ..+     ....+|...|.++.|++. +
T Consensus         3 ~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~----------~~~-----~~l~~h~~~V~~l~~s~~~~   66 (753)
T 3jro_A            3 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETH----------KLI-----DTLTGHEGPVWRVDWAHPKF   66 (753)
T ss_dssp             -----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEE----------EEE-----EEECCCSSCEEEEEECCTTS
T ss_pred             eecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCC----------ccc-----eeccCCcCceEEEEecCCCC
Confidence            45679999999999997 577899999999999999864321          001     123589999999999863 2


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeeecCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHR  190 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l~~h~  190 (441)
                      +.+|++|+.|++|++||+.++.  .+..+. +.+.+.++.++|... ..++++|+.|+.|++||+.++.  ....+.+|.
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~  145 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCC-CCEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence            7899999999999999999886  344443 456788999988621 3479999999999999998873  345678999


Q ss_pred             CCeEEEEEecC-------------CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          191 DGIMTVEWSTS-------------SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       191 ~~v~~v~fsp~-------------~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ..|.++.|+|.             ++ +|++|+.||+|++||++++......                            
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~----------------------------  196 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVL----------------------------  196 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEE----------------------------
T ss_pred             CceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCccccee----------------------------
Confidence            99999999994             55 5789999999999999764211000                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC---CCEEEEeecCCcEEEeeCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~D~~i~~wd~~  334 (441)
                                                             .....+|.++|++++|+|+   +.+|++|+.|++|++||+.
T Consensus       197 ---------------------------------------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          197 ---------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ---------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             ---------------------------------------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                                                   0012467889999999999   8999999999999999998


Q ss_pred             CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545          335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                      ++.....                                        .......+|...|++++|+|+|++|++|+.|+.
T Consensus       238 ~~~~~~~----------------------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          238 NEQGPWK----------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             SSSSCCB----------------------------------------CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred             CCCCcce----------------------------------------eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence            7542110                                        011223458889999999999999999999999


Q ss_pred             EEEeCCCCC
Q 013545          415 ILVWCPSRH  423 (441)
Q Consensus       415 i~vW~~~~~  423 (441)
                      |++|++..+
T Consensus       278 I~vwd~~~~  286 (753)
T 3jro_A          278 VTLWKENLE  286 (753)
T ss_dssp             EECCBCCSS
T ss_pred             EEEEecCCC
Confidence            999999854

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.8e-31  Score=256.46  Aligned_cols=261  Identities=10%  Similarity=0.041  Sum_probs=174.1

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe------cCCeeEEEeeccCC-----CCccEEEEEeCCCcEEEEE
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK------MPGKVYRTAMSPLA-----ASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~las~s~d~~I~vwd  176 (441)
                      .+.+++.++.++|+|+.|++|||||+.++.......      +.+.+.+++|+|..     .+..+||+|+.|++|+|||
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            344555567789999999999999999887654322      34668999998732     2456899999999999999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      ++++..+..+.+|...|.+++|+|++..+|++++.|++|++||++++..............                   
T Consensus       173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~-------------------  233 (393)
T 4gq1_A          173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN-------------------  233 (393)
T ss_dssp             EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC-------------------
T ss_pred             CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc-------------------
Confidence            9999888888899999999999999876789999999999999987654322211000000                   


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc-cCCCEEEEeecCCcEEEeeCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                 ..........                ........+|...|.++.|+ ||++.|++++.|+++++||+.+
T Consensus       234 -----------~~~~s~~~~~----------------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          234 -----------PWLLTLNTLP----------------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             -----------CCSEEEESGG----------------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred             -----------ceEEeccccc----------------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence                       0000000000                00001124677889999987 8999999999999999999987


Q ss_pred             CCceeeee-e-----eE-------Ee-ccCcceEEEeeC--CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEE
Q 013545          336 GRNTLVNF-E-----TV-------RL-QTSKPIQLATTQ--DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCC  398 (441)
Q Consensus       336 ~~~~~~~~-~-----~~-------~~-~~~~~~~~~~~~--~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~  398 (441)
                      ++...... +     ..       .. .........+.+  ++.++++++. +.+++||+.+++....+.+|..+|.+|+
T Consensus       287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva  366 (393)
T 4gq1_A          287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC  366 (393)
T ss_dssp             -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred             CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE
Confidence            54211100 0     00       00 001111222222  3334445543 6899999999999999999999999999


Q ss_pred             EcCCCCeEEEeecCCc
Q 013545          399 FSSQDQELYTGGNDRQ  414 (441)
Q Consensus       399 fspd~~~l~s~s~D~~  414 (441)
                      |||||++||++++|+.
T Consensus       367 fspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          367 WHQDGSHLAIATEGSV  382 (393)
T ss_dssp             ECTTSSEEEEEESSEE
T ss_pred             EcCCCCEEEEEeCCCe
Confidence            9999999999998875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-30  Score=272.86  Aligned_cols=289  Identities=15%  Similarity=0.239  Sum_probs=223.4

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ...+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++...                 ....+|...|.++.|+| +
T Consensus        48 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~  108 (814)
T 3mkq_A           48 VRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKV-----------------VDFEAHPDYIRSIAVHP-T  108 (814)
T ss_dssp             EEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEE-----------------EEEECCSSCEEEEEECS-S
T ss_pred             EEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEecCCCCEEEEEEeC-C
Confidence            345668999999999997 5789999999999999999865421                 11237899999999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCC-eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-CC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCT-RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DG  192 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-~~  192 (441)
                      +.+|++++.|++|++||+.++ .....+. +.+.+.++.++|.  +..++++++.|+.|++||+.++.....+..|. ..
T Consensus       109 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~  186 (814)
T 3mkq_A          109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG  186 (814)
T ss_dssp             SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT--EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence            889999999999999999887 5555554 4567888888873  23589999999999999999988877776554 88


Q ss_pred             eEEEEEec--CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          193 IMTVEWST--SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       193 v~~v~fsp--~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      +.+++|+|  +++ +|++++.||.|++||++++.+...+                                         
T Consensus       187 v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~-----------------------------------------  224 (814)
T 3mkq_A          187 VNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATL-----------------------------------------  224 (814)
T ss_dssp             CCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEE-----------------------------------------
T ss_pred             EEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEE-----------------------------------------
Confidence            99999999  776 5789999999999999876443322                                         


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                    .+|.+.|.+++|+|++.+|++++.|++|++||+.+++..    .......
T Consensus       225 ------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~~  270 (814)
T 3mkq_A          225 ------------------------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE----KTLNVGL  270 (814)
T ss_dssp             ------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE----EEECCSS
T ss_pred             ------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----EEeecCC
Confidence                                          246678999999999999999999999999999987532    2222334


Q ss_pred             CcceEEEeeCCCc--EEEEeCCCceEEEEccCCceE-------------------------------------------e
Q 013545          351 SKPIQLATTQDPA--VVFVPCMTAVKAFDIWSGKTC-------------------------------------------L  385 (441)
Q Consensus       351 ~~~~~~~~~~~~~--~~~~~~~~~~~~wd~~~~~~~-------------------------------------------~  385 (441)
                      .....+++++++.  +++++....+.+|++..+...                                           .
T Consensus       271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (814)
T 3mkq_A          271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK  350 (814)
T ss_dssp             SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCE
T ss_pred             CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeee
Confidence            4566777788876  455566677777876442211                                           1


Q ss_pred             eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          386 TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       386 ~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      .+..|...+.+++|+|||++|++++ |+.+.+|+...
T Consensus       351 ~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          351 ELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             EECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             cCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence            2234555678889999888888887 88888888654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.3e-30  Score=252.91  Aligned_cols=297  Identities=12%  Similarity=0.076  Sum_probs=215.4

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccce---------------------------------
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRS---------------------------------   90 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------   90 (441)
                      .++++++|++ ++++|+++ .++.|++||+.+++.............                                 
T Consensus         5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            5689999997 56766555 678999999987761100000000000                                 


Q ss_pred             -------eEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCcEEEEECC--CCeEEEEE---ecCCeeEEEeeccCC
Q 013545           91 -------VFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTN--CTRVVMNF---KMPGKVYRTAMSPLA  157 (441)
Q Consensus        91 -------~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~i~iWd~~--~~~~~~~~---~~~~~~~~~~~~~~~  157 (441)
                             ..........+|...|.++.|+| ++.+| ++|+.|++|++||+.  ++..+..+   .+...+.++.++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence                   00000011235777899999987 67775 899999999999998  77777666   345678889998854


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCceee----eecCCCCCeEEEEEecC---CCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545          158 ASHMLIAAGTEDVQVRLCDIASGAISQ----TLSGHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (441)
Q Consensus       158 ~~~~~las~s~d~~I~vwdl~~~~~~~----~l~~h~~~v~~v~fsp~---~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~  230 (441)
                         .+|++|+.++.|++|++.+++...    .+.+|...|.+++|+|+   ++ +|++|+.|++|++||++++.++..+ 
T Consensus       162 ---~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~-  236 (450)
T 2vdu_B          162 ---TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKW-  236 (450)
T ss_dssp             ---SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEE-
T ss_pred             ---CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeee-
Confidence               478999999999999999887554    78899999999999999   76 5789999999999999865433221 


Q ss_pred             cCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEE
Q 013545          231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL  310 (441)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  310 (441)
                                                                                           ..+|.+.|+++
T Consensus       237 ---------------------------------------------------------------------~~~h~~~v~~~  247 (450)
T 2vdu_B          237 ---------------------------------------------------------------------LFGHKHFVSSI  247 (450)
T ss_dssp             ---------------------------------------------------------------------CCCCSSCEEEE
T ss_pred             ---------------------------------------------------------------------ecCCCCceEEE
Confidence                                                                                 12577889999


Q ss_pred             EEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE----------------------eccCcceEEEeeCCCcEEEEe
Q 013545          311 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR----------------------LQTSKPIQLATTQDPAVVFVP  368 (441)
Q Consensus       311 ~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~  368 (441)
                      +|+ ++.+|++++.|++|++||+.+++.... +....                      ........+++.+++..++++
T Consensus       248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  325 (450)
T 2vdu_B          248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF  325 (450)
T ss_dssp             EEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred             EEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence            999 999999999999999999998764221 11000                      011234467888999888887


Q ss_pred             C--CCceEEEEc--cCC---ceEeeecccccceEEEEEcCCCCeEEEe-ec------CCcEEEeCCC
Q 013545          369 C--MTAVKAFDI--WSG---KTCLTFRGHYEYVNCCCFSSQDQELYTG-GN------DRQILVWCPS  421 (441)
Q Consensus       369 ~--~~~~~~wd~--~~~---~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~------D~~i~vW~~~  421 (441)
                      +  ...+++|++  .++   +.+..+.+| +.|.+++|+|++ .+++. +.      +..|++|...
T Consensus       326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             ETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             ECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence            5  468999999  555   667788888 889999999964 55543 43      5568999654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=1.4e-30  Score=242.69  Aligned_cols=211  Identities=18%  Similarity=0.296  Sum_probs=169.3

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC--eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      .+|...|.+++|++ ++.+||||+.|++|++||+..+  +++..+. +.+.+.++.|++.. ...+|++|+.|+.|++||
T Consensus         6 ~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            6 NAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             CSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEEEEE
T ss_pred             cCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEEEEE
Confidence            48999999999986 7999999999999999999743  4555554 45678889887532 135899999999999999


Q ss_pred             CCCCc--eeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          177 IASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       177 l~~~~--~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      +++++  .+..+.+|...|.+++|+|+  +. +|++++.|++|++||++......                         
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~-------------------------  137 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTS-------------------------  137 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBC-------------------------
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCcee-------------------------
Confidence            99874  55678899999999999997  55 68999999999999987531100                         


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-------------CCEE
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-------------GMYL  319 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-------------g~~l  319 (441)
                                                                  .....+|...|.+++|+|+             +++|
T Consensus       138 --------------------------------------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l  173 (297)
T 2pm7_B          138 --------------------------------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (297)
T ss_dssp             --------------------------------------------CEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred             --------------------------------------------eeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence                                                        0012457788999999997             5799


Q ss_pred             EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE
Q 013545          320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      ++|+.|++|++||+.+++...                                         ....++.+|...|.+|+|
T Consensus       174 ~sgs~D~~v~lwd~~~~~~~~-----------------------------------------~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          174 VTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             EEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSCEEEEEE
T ss_pred             EEEcCCCcEEEEEEcCCCceE-----------------------------------------EEEEEecCCCCceEEEEE
Confidence            999999999999987644211                                         122456789999999999


Q ss_pred             cCCC---CeEEEeecCCcEEEeCCCCC
Q 013545          400 SSQD---QELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       400 spd~---~~l~s~s~D~~i~vW~~~~~  423 (441)
                      +|++   ++|+||+.|++|+||++...
T Consensus       213 sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             CCCCCCceEEEEEECCCcEEEEEeCCC
Confidence            9995   89999999999999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=9.5e-31  Score=257.22  Aligned_cols=258  Identities=15%  Similarity=0.195  Sum_probs=197.6

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEecC-------------CeeEEEeeccC
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----------VVMNFKMP-------------GKVYRTAMSPL  156 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-----------~~~~~~~~-------------~~~~~~~~~~~  156 (441)
                      .|.+.|.++.|+| ++.+||+|+.|++|++||+.++.           +...+..+             +.+.++.+++.
T Consensus        26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            5778999999987 78999999999999999998766           34455433             56888899886


Q ss_pred             CCCccEEEEEeCCCcEEEEECCCCcee---------------------------------------ee-ecCCCCCeEEE
Q 013545          157 AASHMLIAAGTEDVQVRLCDIASGAIS---------------------------------------QT-LSGHRDGIMTV  196 (441)
Q Consensus       157 ~~~~~~las~s~d~~I~vwdl~~~~~~---------------------------------------~~-l~~h~~~v~~v  196 (441)
                      .. ..+|++++.|+.|++||+.++...                                       +. +.+|...|.++
T Consensus       105 ~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          105 KN-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CS-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CC-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            42 147888899999999999764431                                       12 46899999999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +|+|+++ +|++| .|++|++||++. ..++..+...                                           
T Consensus       184 ~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------------  218 (447)
T 3dw8_B          184 SINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIK-------------------------------------------  218 (447)
T ss_dssp             EECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECC-------------------------------------------
T ss_pred             EEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecc-------------------------------------------
Confidence            9999987 56787 799999999983 3333222100                                           


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC---
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS---  351 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~---  351 (441)
                                           .....+|...|++++|+|++ .+|++|+.|++|++||+.+++...........+..   
T Consensus       219 ---------------------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  277 (447)
T 3dw8_B          219 ---------------------PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN  277 (447)
T ss_dssp             ---------------------CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred             ---------------------cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence                                 00124677889999999998 99999999999999999987631100111111222   


Q ss_pred             ---------cceEEEeeCCCcEEEEeCCCceEEEEccC-CceEeeecccccc---------------eEEEEEcCCCCeE
Q 013545          352 ---------KPIQLATTQDPAVVFVPCMTAVKAFDIWS-GKTCLTFRGHYEY---------------VNCCCFSSQDQEL  406 (441)
Q Consensus       352 ---------~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-~~~~~~l~gh~~~---------------v~~v~fspd~~~l  406 (441)
                               ....+++++++.++++++.+.+++||+.+ ++.+.++.+|...               +..++|+|++++|
T Consensus       278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l  357 (447)
T 3dw8_B          278 RSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV  357 (447)
T ss_dssp             CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE
T ss_pred             cccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE
Confidence                     56678999999998887778999999987 8889999999753               2349999999999


Q ss_pred             EEeecCCcEEEeCCCCCCCC
Q 013545          407 YTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       407 ~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ++|+.|+.|++|++.+++..
T Consensus       358 ~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          358 MTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEECSTTEEEEEETTTCCEE
T ss_pred             EEeccCCEEEEEEcCCCcce
Confidence            99999999999999987653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=4.4e-30  Score=267.24  Aligned_cols=249  Identities=17%  Similarity=0.289  Sum_probs=201.8

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC-----eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-----RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQV  172 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I  172 (441)
                      ..+|++.|.++.+++.++++|+|||.|++|++||+...     .....+. +.+.+.++.+++++   .+|++|+.|+.|
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g---~~l~sgs~Dg~v  454 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG---QFALSGSWDGEL  454 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC---CEEEEEeCCCcE
Confidence            45899999999998867789999999999999998753     2333333 45678889998854   489999999999


Q ss_pred             EEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       173 ~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      ++||+.++.....+.+|...|.+++|+|+++. |+||+.|++|++||+.........                       
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~-----------------------  510 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTIS-----------------------  510 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEEC-----------------------
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcceeec-----------------------
Confidence            99999999999999999999999999999985 789999999999997542111100                       


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--CEEEEeecCCcEEE
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRL  330 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~~  330 (441)
                                                                   ....+|...|.+++|+|++  ..|++|+.|++|++
T Consensus       511 ---------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~v  545 (694)
T 3dm0_A          511 ---------------------------------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV  545 (694)
T ss_dssp             ---------------------------------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred             ---------------------------------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEE
Confidence                                                         0013577889999999987  58999999999999


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      ||+.+++..    .....+......+++++++..+++++. +.+++||+.+++.+..+..| ..|.+++|+|++.+|+++
T Consensus       546 wd~~~~~~~----~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~  620 (694)
T 3dm0_A          546 WNLSNCKLR----STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAA  620 (694)
T ss_dssp             EETTTCCEE----EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEE
T ss_pred             EECCCCcEE----EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEE
Confidence            999876532    223334556678899999999888765 68999999999998888754 679999999998888766


Q ss_pred             ecCCcEEEeCCCCCCC
Q 013545          410 GNDRQILVWCPSRHIS  425 (441)
Q Consensus       410 s~D~~i~vW~~~~~~~  425 (441)
                      + |+.|+||++.++..
T Consensus       621 ~-~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          621 T-EHGIKIWDLESKSI  635 (694)
T ss_dssp             E-TTEEEEEETTTTEE
T ss_pred             c-CCCEEEEECCCCCC
Confidence            5 66799999987654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=2.9e-30  Score=246.78  Aligned_cols=295  Identities=12%  Similarity=0.115  Sum_probs=203.2

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      ..+|.+.|++++|+| ++++|++|+.|+ ++|||+.+....            ..       .+...+..+.+.+ +++.
T Consensus        15 ~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~------------~~-------~~~~~~~~~~~~~-~~~~   72 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHI------------MS-------QEMRHLSKVRMLH-RTNY   72 (355)
T ss_dssp             ----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEE------------EE-------EECSCCCEEEECT-TSSE
T ss_pred             cccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCccee------------ee-------eecCCeEEEEEcC-CCCE
Confidence            368999999999996 578999988775 789998654311            10       0111355566665 3445


Q ss_pred             E-EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeEEE
Q 013545          119 F-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV  196 (441)
Q Consensus       119 l-~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v  196 (441)
                      + ++++.|++|++||+.+++++..+.+...+..+.+++.     .++++ .|+.|++||+.++ +.+..+..   ....+
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~  143 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE-----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVC  143 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS-----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred             EEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC-----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceE
Confidence            5 6788899999999999999999888888888888753     23333 3789999999998 77766665   44556


Q ss_pred             EEecCCCcEEEE-eecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          197 EWSTSSEWILVT-GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       197 ~fsp~~~~~l~s-~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      ++++  ..++++ |+.||.|++||++++......+...                                          
T Consensus       144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~------------------------------------------  179 (355)
T 3vu4_A          144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV------------------------------------------  179 (355)
T ss_dssp             EEET--TEEEEEESSCTTCEEEEECCC-----------------------------------------------------
T ss_pred             EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc------------------------------------------
Confidence            6777  344333 7899999999998653211100000                                          


Q ss_pred             cccccCCCCcccccCCCcccc-cccceeeccCeEEEEEccCCCEEEEeecCCc-EEEeeCCCCCceeeeeeeEE-e-ccC
Q 013545          276 VGRIPAKGSVRQRLHPGMLSS-QDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVR-L-QTS  351 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-i~~wd~~~~~~~~~~~~~~~-~-~~~  351 (441)
                                    ....... .....+|.++|++|+|+|+|++|+||+.|++ |++||+.+++..    ..+. . +..
T Consensus       180 --------------~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~----~~~~~g~h~~  241 (355)
T 3vu4_A          180 --------------QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV----REFRRGLDRA  241 (355)
T ss_dssp             ---------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE----EEEECTTCCS
T ss_pred             --------------cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE----EEEEcCCCCC
Confidence                          0000000 1124578999999999999999999999999 999999987642    2222 1 345


Q ss_pred             cceEEEeeCCCcEEEEeCC-CceEEEEccCCceE--eeec---------------------ccccceEEEEEcCCCCeEE
Q 013545          352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTC--LTFR---------------------GHYEYVNCCCFSSQDQELY  407 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~--~~l~---------------------gh~~~v~~v~fspd~~~l~  407 (441)
                      ....++++|++..+++++. ..+++||+.++...  ..+.                     ++..+...++|+|||++|+
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~  321 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV  321 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence            6678999999999888765 68999999765321  1111                     1122347799999999999


Q ss_pred             EeecCCcEEEeCCCCCCCC
Q 013545          408 TGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       408 s~s~D~~i~vW~~~~~~~~  426 (441)
                      +++.|+.+++|++..+...
T Consensus       322 ~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          322 VWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             EETTTTEEEEEEEEEETTT
T ss_pred             EEeCCCeEEEEEEEcCCCC
Confidence            9999999999988765433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=5.5e-30  Score=247.79  Aligned_cols=265  Identities=13%  Similarity=0.157  Sum_probs=205.2

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe------EEEEEe-cCCeeEEEeeccC----CCCccEEEEE
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR------VVMNFK-MPGKVYRTAMSPL----AASHMLIAAG  166 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~------~~~~~~-~~~~~~~~~~~~~----~~~~~~las~  166 (441)
                      ...+|...|.++.|++   ++|++|+.|++|++||+.++.      .+..+. +...+.++.+++.    +....+|+++
T Consensus        11 ~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            4568999999999976   699999999999999999887      454444 5567889999885    3111589999


Q ss_pred             eCCCcEEEEECCCCce-----eeeecCC-----CCCeEEEEEe----cCCCcEEEEeecCCcEEEEEcCC------Ccee
Q 013545          167 TEDVQVRLCDIASGAI-----SQTLSGH-----RDGIMTVEWS----TSSEWILVTGGCDGAIRFWDIRR------AGCF  226 (441)
Q Consensus       167 s~d~~I~vwdl~~~~~-----~~~l~~h-----~~~v~~v~fs----p~~~~~l~s~s~Dg~I~iWD~~~------~~~~  226 (441)
                      +.|+.|++||+++++.     ...+.+|     ...|.+++|+    |+++.+|++++.||.|++||++.      +.++
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            9999999999999887     8888888     5999999999    99874278999999999999875      2111


Q ss_pred             eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC
Q 013545          227 RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA  306 (441)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  306 (441)
                      .                                             ..+...+      ...        ......|...
T Consensus       168 ~---------------------------------------------~~~~~~~------~~~--------~~~~~~~~~~  188 (397)
T 1sq9_A          168 N---------------------------------------------WSPTLEL------QGT--------VESPMTPSQF  188 (397)
T ss_dssp             C---------------------------------------------CCCEEEE------EEE--------ECCSSSSCCC
T ss_pred             e---------------------------------------------ccCccee------eee--------eccccCCCCC
Confidence            1                                             0000000      000        0001236678


Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe---c---cCcceEEEeeCCCcEEEEeCC----CceEEE
Q 013545          307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL---Q---TSKPIQLATTQDPAVVFVPCM----TAVKAF  376 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~----~~~~~w  376 (441)
                      |.+++|+|++ +|++++.|+.|++||+.+++..    .....   +   ......+++++++..+++++.    +.+++|
T Consensus       189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~  263 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFNNGTVQISELSTLRPL----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  263 (397)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEE----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             ceEEEECCCc-eEEEEeCCCcEEEEECCCCcee----EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence            9999999999 9999999999999999876532    22232   3   455677889999998888765    589999


Q ss_pred             EccCCceEeeecc-------------cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          377 DIWSGKTCLTFRG-------------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       377 d~~~~~~~~~l~g-------------h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      |+.+++.+..+.+             |...|.+++|+|++++|++++.|+.|++|++.++......
T Consensus       264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            9999999999999             9999999999999999999999999999999877644333

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=1.5e-30  Score=248.24  Aligned_cols=256  Identities=15%  Similarity=0.196  Sum_probs=201.1

Q ss_pred             cCcccceeEEEEeeC---CCCEEEEEeCCCcEEEEECCCCeEEEEEe------cCCeeEEEeeccCCCC-ccEEEEEeCC
Q 013545          100 HGHKYAISSAIWYPV---DTGLFVTGSYDHYVKVWDTNCTRVVMNFK------MPGKVYRTAMSPLAAS-HMLIAAGTED  169 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~---~~~~l~sgs~D~~i~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~las~s~d  169 (441)
                      .+|...|.++.|+|.   ....+++++.|+.|++||+.++..+..+.      +.+.+.++.+++.... ..+|++|+.|
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            489999999999973   34456666666799999999877665544      3356889999987432 4689999999


Q ss_pred             CcEEEEECCCCceeeeecCCCCCeEEEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545          170 VQVRLCDIASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL  248 (441)
Q Consensus       170 ~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (441)
                      +.|++||+++++.+..+.+|...|.+++|+| ++. +|++++.||+|++||++++++...+..                 
T Consensus        95 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------  156 (366)
T 3k26_A           95 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGG-----------------  156 (366)
T ss_dssp             CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECS-----------------
T ss_pred             CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecc-----------------
Confidence            9999999999999999999999999999999 665 689999999999999987654433210                 


Q ss_pred             ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcE
Q 013545          249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  328 (441)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i  328 (441)
                                                                         ..+|...|.+++|+|++.+|++++.|++|
T Consensus       157 ---------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  185 (366)
T 3k26_A          157 ---------------------------------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSL  185 (366)
T ss_dssp             ---------------------------------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ---------------------------------------------------cccccCceeEEEECCCCCEEEEecCCCCE
Confidence                                                               12467789999999999999999999999


Q ss_pred             EEeeCCCCCceee------------------------eeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCce
Q 013545          329 RLWDVESGRNTLV------------------------NFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT  383 (441)
Q Consensus       329 ~~wd~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~  383 (441)
                      ++||+.+++....                        .+.....+......+++.  +..+++++. +.+++||+.+++.
T Consensus       186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          186 KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             EEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred             EEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence            9999986532100                        000011133444556666  556666654 7899999987644


Q ss_pred             --------------EeeecccccceEEEEEcCC--CCeEEEeecCCcEEEeCCCCCCCC
Q 013545          384 --------------CLTFRGHYEYVNCCCFSSQ--DQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       384 --------------~~~l~gh~~~v~~v~fspd--~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                                    +..+.+|...|++++|+|+  +++|++|+.|+.|++|++.++...
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~  322 (366)
T 3k26_A          264 DIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH  322 (366)
T ss_dssp             CGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred             cccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence                          7789999999999999999  999999999999999999887543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.6e-30  Score=237.21  Aligned_cols=276  Identities=12%  Similarity=0.096  Sum_probs=175.4

Q ss_pred             eeEEEccCCCC-cE-EEEeeCCCcEEEEECCCCcccCCCCceecc-ceeEEeecc----------cccCcccceeEEEEe
Q 013545           46 INSLQVDLTEE-RY-LLSGASDSSVAVYDVQRATDYEGGGHIAKH-RSVFVVDKQ----------HEHGHKYAISSAIWY  112 (441)
Q Consensus        46 V~~l~~s~~~~-~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~h~~~V~~~~~~  112 (441)
                      |.++.|-..+. +. ++++++ .+|++|+..++...+.......+ .+++.+...          ...-|...|.+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            44555543332 23 555554 89999999876221100000000 011111000          012355678778777


Q ss_pred             eCC----CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe--CCCcEEEEEC-CCCceeee
Q 013545          113 PVD----TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDI-ASGAISQT  185 (441)
Q Consensus       113 ~~~----~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s--~d~~I~vwdl-~~~~~~~~  185 (441)
                      | +    +..+++++.+  +++|++.+++                        ++.+++  .|+.|++|++ ++|+.+..
T Consensus       121 p-d~~~~~~~l~s~g~~--~~v~~l~~g~------------------------lv~ss~~g~d~~V~~~~~s~dG~~~~s  173 (356)
T 2w18_A          121 S-DDESEKQVLLKSGNI--KAVLGLTKRR------------------------LVSSSGTLSDQQVEVMTFAEDGGGKEN  173 (356)
T ss_dssp             ------CCEEEEEEEEE--EEEEEETTTE------------------------EEEEESSSTTCEEEEEEECTTSCEEEE
T ss_pred             C-CccccccEEEeCCCe--EEEEecCCCc------------------------EEEecccCCCCcEEEEEECCCCceeee
Confidence            6 6    6778888744  7778654333                        333322  5889999999 56888888


Q ss_pred             ecCCCCCeEEEEEec---CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          186 LSGHRDGIMTVEWST---SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       186 l~~h~~~v~~v~fsp---~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      +.+|...+..++|+|   +++ +|+|+|.|++|||||+++++++.+++...                             
T Consensus       174 ~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-----------------------------  223 (356)
T 2w18_A          174 QFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDD-----------------------------  223 (356)
T ss_dssp             EEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC-----------------------------
T ss_pred             eccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCC-----------------------------
Confidence            999999999999999   556 68999999999999999998877764211                             


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE------------EEeecCCcEEE
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL------------LSAGSDSRIRL  330 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l------------~sgs~D~~i~~  330 (441)
                                                             .|...+.+++|+|+|.++            +||+.|++|++
T Consensus       224 ---------------------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          224 ---------------------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             ------------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred             ---------------------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence                                                   112346778888888875            67899999999


Q ss_pred             eeCCCCCceeeeeeeEEeccCc-ceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceE-EEEEcCCCCeEE
Q 013545          331 WDVESGRNTLVNFETVRLQTSK-PIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVN-CCCFSSQDQELY  407 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~-~v~fspd~~~l~  407 (441)
                      ||+.+++......  ..+..+. ...+....++..+++++ .+++++||+.+++++.+|.+|...+. +++|||||++|+
T Consensus       265 Wd~~tgk~l~v~~--~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La  342 (356)
T 2w18_A          265 INPKTTLSVGVML--YCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL  342 (356)
T ss_dssp             EETTTTEEEEEEE--ECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred             EECCCCEEEEEEE--eeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence            9999876321110  0000111 01122222344555553 47899999999999999999988765 589999999999


Q ss_pred             EeecCCcEEEeCC
Q 013545          408 TGGNDRQILVWCP  420 (441)
Q Consensus       408 s~s~D~~i~vW~~  420 (441)
                      ||+.|++||||+.
T Consensus       343 SGS~D~TIklWd~  355 (356)
T 2w18_A          343 AGQKDGNIFVYHY  355 (356)
T ss_dssp             EECTTSCEEEEEE
T ss_pred             EEECCCcEEEecC
Confidence            9999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=3e-30  Score=251.70  Aligned_cols=242  Identities=16%  Similarity=0.195  Sum_probs=189.5

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                      +.++.|+| ++.+|++++.|++|++||+.+++....+..........++++   ..+|++|+.|+.|++||+++++....
T Consensus        59 ~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~  134 (420)
T 3vl1_A           59 GKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQ---MRRFILGTTEGDIKVLDSNFNLQREI  134 (420)
T ss_dssp             CTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSS---SCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred             ccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecC---CCEEEEEECCCCEEEEeCCCcceeee
Confidence            44567777 688999999999999999987665433333333333344443   45899999999999999999999888


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      +.+|...|.+++|+|+++ +|++++.|++|++||++++++...                                     
T Consensus       135 ~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~-------------------------------------  176 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRT-------------------------------------  176 (420)
T ss_dssp             TTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEE-------------------------------------
T ss_pred             cccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceE-------------------------------------
Confidence            899999999999999987 578999999999999986533221                                     


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  345 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~  345 (441)
                                                        ..+|.+.|.+++|+|++.+|++++.|++|++||+.+++.... +..
T Consensus       177 ----------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~  221 (420)
T 3vl1_A          177 ----------------------------------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT-FNR  221 (420)
T ss_dssp             ----------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECB
T ss_pred             ----------------------------------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE-eec
Confidence                                              235778899999999999999999999999999998753211 110


Q ss_pred             EEec---------------------cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee-cccccceEEEEEcCC
Q 013545          346 VRLQ---------------------TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQ  402 (441)
Q Consensus       346 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd  402 (441)
                      ....                     ......+++++++..+++++. +.+++||+.+++....+ .+|...|.+++|+|+
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  301 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN  301 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS
T ss_pred             CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC
Confidence            0000                     122233455788888887765 68999999998877665 468899999999999


Q ss_pred             CC-eEEEeecCCcEEEeCCCCCC
Q 013545          403 DQ-ELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       403 ~~-~l~s~s~D~~i~vW~~~~~~  424 (441)
                      ++ +|++|+.|+.|++|++.++.
T Consensus       302 ~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          302 NANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             CTTEEEEEETTSEEEEEETTCTT
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCc
Confidence            99 99999999999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=7.8e-31  Score=252.21  Aligned_cols=245  Identities=10%  Similarity=0.046  Sum_probs=186.6

Q ss_pred             cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC--eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      |..+|.++.|+| ++.+||+|+.|++|++||+.++  +.+..+. +.+.+.++.+++++   .+|++++.|+.|++||++
T Consensus        10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C           10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---NRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---CCEEEEETTSSEEEC---
T ss_pred             CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---CEEEEEeCCCeEEEEEcC
Confidence            556899999987 7889999999999999999987  4554444 35678899998864   479999999999999999


Q ss_pred             CCc---eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          179 SGA---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       179 ~~~---~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                      +++   ....+.+|...|.+++|+|+++. |++++.|++|++||++.+......                          
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~--------------------------  138 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVS--------------------------  138 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCC--------------------------
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceee--------------------------
Confidence            987   56778899999999999999875 789999999999998764310000                          


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccccccee-eccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA-HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                                                                ..... |.+.|++++|+|++.+|++++.|++|++||+.
T Consensus       139 ------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          139 ------------------------------------------KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             ------------------------------------------EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             ------------------------------------------eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence                                                      00122 77889999999999999999999999999986


Q ss_pred             CCCc--------------eeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCce----EeeecccccceE
Q 013545          335 SGRN--------------TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT----CLTFRGHYEYVN  395 (441)
Q Consensus       335 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~----~~~l~gh~~~v~  395 (441)
                      ....              ........ .+......++++|++.++++++. +.+++||+.+++.    +.++.+|..+|.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~  255 (377)
T 3dwl_C          177 VRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLR  255 (377)
T ss_dssp             CSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEE
T ss_pred             ecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceE
Confidence            4321              01111111 33445667899999998887755 6899999999987    889999999999


Q ss_pred             EEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          396 CCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       396 ~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      +++|+||+++|++|+.|+.+ +|+..
T Consensus       256 ~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          256 SLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            99999999999999877777 55444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.7e-30  Score=242.55  Aligned_cols=265  Identities=7%  Similarity=0.070  Sum_probs=192.2

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 013545           55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (441)
Q Consensus        55 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~  134 (441)
                      ++++|+||+.||+|++||+.++....            ..       ....|.++.++|.    ++|++.|++|++|+..
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~------------~~-------~~~~v~~~~~~~~----~~s~s~D~~i~~w~~~  103 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTIT------------TI-------TTPNPRTGGEHPA----IISRGPCNRLLLLYPG  103 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEE------------EE-------EEECCCTTCCCCS----EEEECSTTEEEEEETT
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEE------------EE-------ecCCceeeeeCCc----eEEecCCCeEEEEEcc
Confidence            46789999999999999998764310            00       0234555556552    9999999999999665


Q ss_pred             ---------CCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCC
Q 013545          135 ---------CTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSS  202 (441)
Q Consensus       135 ---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~  202 (441)
                               +++.+..+..  .+.+..+.++|.. +..++++++.|+.|++||+++++....+. .|...|.+++|+|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg  182 (343)
T 3lrv_A          104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEV-NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS  182 (343)
T ss_dssp             TEEEEEETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS
T ss_pred             CceEEeecCCcceeEEeecCCCCCEEEEEcCCCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC
Confidence                     5554555543  3568888888721 23489999999999999999999876664 456689999999998


Q ss_pred             CcEEEEeecCCcEEEEEcCCCcee-eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          203 EWILVTGGCDGAIRFWDIRRAGCF-RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      . +|++|+.||.|++||++++.+. ..                                                     
T Consensus       183 ~-~lasg~~dg~i~iwd~~~~~~~~~~-----------------------------------------------------  208 (343)
T 3lrv_A          183 L-LLALYSPDGILDVYNLSSPDQASSR-----------------------------------------------------  208 (343)
T ss_dssp             C-EEEEECTTSCEEEEESSCTTSCCEE-----------------------------------------------------
T ss_pred             C-EEEEEcCCCEEEEEECCCCCCCccE-----------------------------------------------------
Confidence            7 5799999999999999865322 11                                                     


Q ss_pred             CCCcccccCCCcccccccce-eeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee--eeeeeEEeccCcceEEEe
Q 013545          282 KGSVRQRLHPGMLSSQDRAT-AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL--VNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~  358 (441)
                                        +. +|.++|++|+|+|+|.+|++++. ++|++||+++.+...  ..+......... ..+++
T Consensus       209 ------------------~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~  268 (343)
T 3lrv_A          209 ------------------FPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDI  268 (343)
T ss_dssp             ------------------CCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CC-EEEEE
T ss_pred             ------------------EeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccc-eEEEE
Confidence                              12 37788999999999999999994 599999999875321  111000011111 35889


Q ss_pred             eCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEEcC---CCCeEEEeecCCcEEEeCCC
Q 013545          359 TQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS---QDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       359 ~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp---d~~~l~s~s~D~~i~vW~~~  421 (441)
                      ++++.++++++  ...+++|++.+....-..    .++.+++|+|   +.+.|++++.|+.++++-..
T Consensus       269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             CCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            99999988843  678999999665432222    5688999999   89999999999999988644

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.3e-29  Score=241.42  Aligned_cols=250  Identities=18%  Similarity=0.302  Sum_probs=196.9

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+|.+.|++++|+| ++++|++|+.||.|+|||+.++...                 ....+|...|.++.+   ++.+|
T Consensus       131 ~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~---~~~~l  189 (401)
T 4aez_A          131 TDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKL-----------------RTMAGHQARVGCLSW---NRHVL  189 (401)
T ss_dssp             CCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEE---ETTEE
T ss_pred             cCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEE-----------------EEecCCCCceEEEEE---CCCEE
Confidence            35899999999997 6789999999999999999765421                 112478999999988   35799


Q ss_pred             EEEeCCCcEEEEECCC-CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          120 VTGSYDHYVKVWDTNC-TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      ++|+.|++|++||+.. ...+..+. +.+.+..+.++++.   .+|++|+.|+.|++||+++++....+.+|...|.+++
T Consensus       190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  266 (401)
T 4aez_A          190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG---LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA  266 (401)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred             EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC---CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence            9999999999999984 44455554 46678889998853   5899999999999999999999999999999999999


Q ss_pred             EecCCCcEEEEee--cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          198 WSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       198 fsp~~~~~l~s~s--~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      |+|++..++++++  .|+.|++||++++.+...+                                              
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----------------------------------------------  300 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV----------------------------------------------  300 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE----------------------------------------------
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE----------------------------------------------
Confidence            9999888888876  7999999999876544332                                              


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE--eecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS--AGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                .|...|.+++|+|++.+|++  |+.|++|++||+.+++...  ......+....
T Consensus       301 --------------------------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~--~~~~~~h~~~v  352 (401)
T 4aez_A          301 --------------------------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK--QVDIPAHDTRV  352 (401)
T ss_dssp             --------------------------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE--EEEEECCSSCC
T ss_pred             --------------------------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee--EEEecCCCCCE
Confidence                                      13356899999999999999  5589999999998754221  12233445667


Q ss_pred             eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee
Q 013545          354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF  387 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l  387 (441)
                      ..+++++++..+++++. +.+++|++.+++.+...
T Consensus       353 ~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          353 LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             CEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            78899999999888765 68999999998876654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=2e-29  Score=243.11  Aligned_cols=254  Identities=12%  Similarity=0.108  Sum_probs=200.8

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      ..+|...|.++.|++....+|++|+.|++|++||+.+++....+.   +.+.+.++.+++.  +..+|++++.|+.|++|
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF--NTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT--EEEEEEEEETTTEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC--CCCEEEEEeCCCEEEEE
Confidence            358999999999998433899999999999999999888776665   4567889999883  23589999999999999


Q ss_pred             ECCCCceeeeec---CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          176 DIASGAISQTLS---GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       176 dl~~~~~~~~l~---~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      |+++ ..+..+.   +|...|.+++|+|+++ +|++++.|+.|++||++ ++++..                        
T Consensus       147 d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~------------------------  199 (383)
T 3ei3_B          147 DFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFK------------------------  199 (383)
T ss_dssp             ETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEE------------------------
T ss_pred             ECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEE------------------------
Confidence            9986 4444554   4458899999999987 57999999999999984 222211                        


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEe
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLW  331 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~w  331 (441)
                                                                     ..+|.+.|.+++|+|++. +|++++.|++|++|
T Consensus       200 -----------------------------------------------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  232 (383)
T 3ei3_B          200 -----------------------------------------------EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLW  232 (383)
T ss_dssp             -----------------------------------------------EECSSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             -----------------------------------------------eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEE
Confidence                                                           235778899999999999 99999999999999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeC-CCcEEEEeCC-CceEEEEccCCceEeeecccc-----------------c
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY-----------------E  392 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~-----------------~  392 (441)
                      |+.+.+......... .+......+++++ ++..+++++. +.+++||+.+++....+.+|.                 +
T Consensus       233 d~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  311 (383)
T 3ei3_B          233 DLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMY  311 (383)
T ss_dssp             EGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSS
T ss_pred             eCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCC
Confidence            998743211111222 2455667789999 9988887765 689999999988877777664                 3


Q ss_pred             ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545          393 YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       393 ~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~  431 (441)
                      .+..++|+||+++  +|+.|++|++|++.++.......+
T Consensus       312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~  348 (383)
T 3ei3_B          312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD  348 (383)
T ss_dssp             SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred             CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence            4566889999988  899999999999998876555544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=6.2e-30  Score=243.32  Aligned_cols=252  Identities=13%  Similarity=0.246  Sum_probs=195.3

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeC---CCcEEEEECCCCeEEE--EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVM--NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~v  174 (441)
                      .+|...|.++.|+|....++++|+.   |++|++||+.+++...  ...+...+.++.+++...+..+|++|+.|+.|++
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i   94 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI   94 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence            4799999999999843345567776   9999999999887643  3456678999999987433468999999999999


Q ss_pred             EECCCCc-eeeeecCCCCCeEEEEE------ecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCccccc
Q 013545          175 CDIASGA-ISQTLSGHRDGIMTVEW------STSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRK  246 (441)
Q Consensus       175 wdl~~~~-~~~~l~~h~~~v~~v~f------sp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~  246 (441)
                      ||+++++ .+..+.+|...|.++.|      +|+++ .|++++.||+|++||++++. ....+....             
T Consensus        95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-------------  160 (357)
T 3i2n_A           95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQ-------------  160 (357)
T ss_dssp             ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCT-------------
T ss_pred             EeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccC-------------
Confidence            9999998 88899999999999965      57776 57899999999999998653 222211000             


Q ss_pred             ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE----EccCCCEEEEe
Q 013545          247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK----VTEDGMYLLSA  322 (441)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~----~s~dg~~l~sg  322 (441)
                                                                            ..+...+.+++    |+|++.+|+++
T Consensus       161 ------------------------------------------------------~~~~~~v~~~~~~~~~~~~~~~l~~~  186 (357)
T 3i2n_A          161 ------------------------------------------------------GENKRDCWTVAFGNAYNQEERVVCAG  186 (357)
T ss_dssp             ------------------------------------------------------TSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred             ------------------------------------------------------CCCCCceEEEEEEeccCCCCCEEEEE
Confidence                                                                  01123577777    78999999999


Q ss_pred             ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC---CCcEEEEeCC-CceEEEEccCCceEeeec-----ccccc
Q 013545          323 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ---DPAVVFVPCM-TAVKAFDIWSGKTCLTFR-----GHYEY  393 (441)
Q Consensus       323 s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~wd~~~~~~~~~l~-----gh~~~  393 (441)
                      +.|++|++||+.+++...     ..........+.+++   ++..+++++. +.+++||+.+++....+.     +|...
T Consensus       187 ~~d~~i~i~d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  261 (357)
T 3i2n_A          187 YDNGDIKLFDLRNMALRW-----ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST  261 (357)
T ss_dssp             ETTSEEEEEETTTTEEEE-----EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC
T ss_pred             ccCCeEEEEECccCceee-----ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCC
Confidence            999999999999875321     122345566788888   7888777654 689999998876655544     99999


Q ss_pred             eEEEEEcCCCC-eEEEeecCCcEEEeCCCCCC
Q 013545          394 VNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       394 v~~v~fspd~~-~l~s~s~D~~i~vW~~~~~~  424 (441)
                      |.+++|+|+++ +|++|+.|+.|++|++..+.
T Consensus       262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            99999999998 89999999999999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=2.3e-30  Score=243.42  Aligned_cols=211  Identities=21%  Similarity=0.303  Sum_probs=160.9

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE--EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV--VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      ..+|++.|.++.|++ ++.+||||+.|++|++||+.++..  +..+. +.+.+.++.|++.. ...+|++|+.|+.|++|
T Consensus         9 ~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-YGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-GSSCEEEEETTSCEEEE
T ss_pred             cccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-CCCEEEEEECCCEEEEE
Confidence            458999999999987 789999999999999999987753  44444 45678889887532 13479999999999999


Q ss_pred             ECCCCc--eeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       176 dl~~~~--~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      |+++++  ....+.+|...|.+++|+|+  +. +|++|+.|++|++||++........                      
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~----------------------  143 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVK----------------------  143 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEEC----------------------
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCccee----------------------
Confidence            999874  56678899999999999998  54 5799999999999998754211100                      


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC----------------
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED----------------  315 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d----------------  315 (441)
                                                                    ....+|...|.+++|+|+                
T Consensus       144 ----------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  177 (316)
T 3bg1_A          144 ----------------------------------------------KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN  177 (316)
T ss_dssp             ----------------------------------------------CBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred             ----------------------------------------------eeeccccCCcceEEEccccCCccccccccccCcc
Confidence                                                          001234455666667665                


Q ss_pred             -CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccce
Q 013545          316 -GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYV  394 (441)
Q Consensus       316 -g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v  394 (441)
                       +.+|++|+.|++|++||+......                                          +...++.+|.++|
T Consensus       178 ~~~~l~sgs~D~~v~lWd~~~~~~~------------------------------------------~~~~~l~~h~~~V  215 (316)
T 3bg1_A          178 YIKRFASGGCDNLIKLWKEEEDGQW------------------------------------------KEEQKLEAHSDWV  215 (316)
T ss_dssp             CCCBEECCBTTSBCCEEEECTTSCE------------------------------------------EEEECCBCCSSCE
T ss_pred             ccceEEEecCCCeEEEEEeCCCCcc------------------------------------------ceeeecccCCCce
Confidence             478999999999999998643210                                          1234567899999


Q ss_pred             EEEEEcCCC----CeEEEeecCCcEEEeCCCC
Q 013545          395 NCCCFSSQD----QELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       395 ~~v~fspd~----~~l~s~s~D~~i~vW~~~~  422 (441)
                      .+++|+|++    ++|+||+.|++|+||++.+
T Consensus       216 ~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          216 RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             EEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            999999997    7899999999999999876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.3e-30  Score=253.02  Aligned_cols=254  Identities=15%  Similarity=0.229  Sum_probs=194.3

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC---Ce---EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC---TR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      .+|.+.|.+++|+|.++.+||||+.|++|++||+.+   +.   ....+.+.+.+.++.+++..   .+|++|+.|+.|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF---DAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS---SEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC---CEEEEEeCCCEEE
Confidence            579999999999975788999999999999999866   32   34555677889999999743   4899999999999


Q ss_pred             EEECC---CCceeeeecC------------CCCCeEEEE--EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccc
Q 013545          174 LCDIA---SGAISQTLSG------------HRDGIMTVE--WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (441)
Q Consensus       174 vwdl~---~~~~~~~l~~------------h~~~v~~v~--fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~  236 (441)
                      +||++   +++....+.+            +...+.++.  ++|++. +|++++.|++|++||+++++++..+..     
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-----  210 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIEN-----  210 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEEC-----
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEcc-----
Confidence            99995   5655544332            455566666  446665 689999999999999987655443311     


Q ss_pred             cCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC
Q 013545          237 GRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG  316 (441)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  316 (441)
                                                                                      ..|.+.|++++|+|++
T Consensus       211 ----------------------------------------------------------------~~h~~~v~~~~~s~~~  226 (437)
T 3gre_A          211 ----------------------------------------------------------------SPRHGAVSSICIDEEC  226 (437)
T ss_dssp             ----------------------------------------------------------------CGGGCCEEEEEECTTS
T ss_pred             ----------------------------------------------------------------CCCCCceEEEEECCCC
Confidence                                                                            1266789999999999


Q ss_pred             CEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-CcceEE----EeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-
Q 013545          317 MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQL----ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-  389 (441)
Q Consensus       317 ~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-  389 (441)
                      .+|++|+.|++|++||+.+++..    ....... .....+    .+++++..+++++. +.+++||+.+++.+..+.+ 
T Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (437)
T 3gre_A          227 CVLILGTTRGIIDIWDIRFNVLI----RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS  302 (437)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEE----EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS
T ss_pred             CEEEEEcCCCeEEEEEcCCccEE----EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC
Confidence            99999999999999999976431    1212112 233345    33456667777766 5799999999987776654 


Q ss_pred             -------------------------cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545          390 -------------------------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       390 -------------------------h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~  431 (441)
                                               |...|++++|+ ++++|+||+.|++|++|++.++.......+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          303 DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             CCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence                                     56678899999 779999999999999999998886666555

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.7e-29  Score=239.13  Aligned_cols=255  Identities=17%  Similarity=0.149  Sum_probs=198.7

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCeeEEEeeccCCCCcc-EEEEEeCCCcEEE
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR----VVMNFKMPGKVYRTAMSPLAASHM-LIAAGTEDVQVRL  174 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~las~s~d~~I~v  174 (441)
                      .+|...|.++.|+| ++.+|++++.|++|++||+.++.    ......+.+.+.++.++++   .. +|++|+.|+.|++
T Consensus         8 ~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            8 QAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeEEE
Confidence            47999999999998 78899999999999999998877    5555566778899999885   45 7899999999999


Q ss_pred             EEC-CCCceeeeecC--CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          175 CDI-ASGAISQTLSG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       175 wdl-~~~~~~~~l~~--h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      ||+ ++++. ..+.+  |...|.+++|+| +. +|++++.|+.|++||+++...-.....                    
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------  140 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVK--------------------  140 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEE--------------------
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEccccccccccccc--------------------
Confidence            999 88765 67788  999999999999 66 578999999999999864100000000                    


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  331 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w  331 (441)
                                                     ..           ... ...|...|.+++|+|++  +++++.|+.|++|
T Consensus       141 -------------------------------~~-----------~~~-~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~  175 (342)
T 1yfq_A          141 -------------------------------NL-----------NSN-NTKVKNKIFTMDTNSSR--LIVGMNNSQVQWF  175 (342)
T ss_dssp             -------------------------------ES-----------CSS-SSSSCCCEEEEEECSSE--EEEEESTTEEEEE
T ss_pred             -------------------------------CC-----------eee-EEeeCCceEEEEecCCc--EEEEeCCCeEEEE
Confidence                                           00           000 01255779999999988  9999999999999


Q ss_pred             eCCC-CCceeeeeeeEEeccCcceEEEeeC-CCcEEEEeCC-CceEEEEccCC------ceEeeeccccc---------c
Q 013545          332 DVES-GRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSG------KTCLTFRGHYE---------Y  393 (441)
Q Consensus       332 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~wd~~~~------~~~~~l~gh~~---------~  393 (441)
                      |+.+ +......  ........+..+++++ ++..+++++. +.+++|++...      +....+.+|..         .
T Consensus       176 d~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
T 1yfq_A          176 RLPLCEDDNGTI--EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP  253 (342)
T ss_dssp             ESSCCTTCCCEE--EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred             ECCcccccccee--eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccccee
Confidence            9987 5432111  1111234456778888 8888877655 68999999876      77888888866         9


Q ss_pred             eEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545          394 VNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       394 v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                      |.+++|+|++++|++|+.|+.|++|++.++.....
T Consensus       254 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  288 (342)
T 1yfq_A          254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN  288 (342)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence            99999999999999999999999999987765433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=3.7e-29  Score=239.51  Aligned_cols=249  Identities=12%  Similarity=0.087  Sum_probs=199.7

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      .|..+|.++.|+| ++++|++|+.|++|++||+.+++  .+..+. +.+.+..+.+++++   .+|++++.|+.|++||+
T Consensus         6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS---NRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT---TEEEEEETTSCEEEEEE
T ss_pred             ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC---CEEEEEcCCCeEEEEEC
Confidence            5888999999987 78899999999999999999887  666665 45678899998853   48899999999999999


Q ss_pred             CCCceee--eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          178 ASGAISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       178 ~~~~~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                      ++++...  .+.+|...|.+++|+|+++ +|++++.|+.|++||++.........                         
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~-------------------------  135 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCK-------------------------  135 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeee-------------------------
Confidence            9887544  3468999999999999987 57899999999999987643111100                         


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                                                .....|...|++++|+|++.+|++++.|++|++||+..
T Consensus       136 ------------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (372)
T 1k8k_C          136 ------------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  173 (372)
T ss_dssp             ------------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             ------------------------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence                                                      00124667899999999999999999999999999752


Q ss_pred             CCc--------------eeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEc
Q 013545          336 GRN--------------TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFS  400 (441)
Q Consensus       336 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs  400 (441)
                      ...              ..........+......+++++++..+++++. +.+++||+.+++.+..+.+|..+|.+++|+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI  253 (372)
T ss_dssp             TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE
T ss_pred             ccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEe
Confidence            110              00111122223445667889999988887765 689999999999999999999999999999


Q ss_pred             CCCCeEEEeecCCcEEEeCCCC
Q 013545          401 SQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       401 pd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      |++++|++| .|+.|++|++..
T Consensus       254 ~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          254 TESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             ETTEEEEEE-TTSSCEEEEEET
T ss_pred             cCCCEEEEE-eCCeEEEEEccC
Confidence            999988877 899999999987

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.4e-28  Score=239.25  Aligned_cols=284  Identities=12%  Similarity=0.089  Sum_probs=220.4

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      ...+.+++|+| ++.++++++.|++|++||+.+++...            ........+|...|.++.+.+ ++.+++++
T Consensus       122 ~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~  187 (433)
T 3bws_A          122 GFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVR------------LSPPEKYKKKLGFVETISIPE-HNELWVSQ  187 (433)
T ss_dssp             SSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEE------------ECCCHHHHTTCCEEEEEEEGG-GTEEEEEE
T ss_pred             CCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEee------------ecCcccccccCCceeEEEEcC-CCEEEEEE
Confidence            35577999997 77889999999999999998664210            011112347888999999865 78899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      +.|++|++||+.+++.+..+.. ...+..+.++++.  ..++++++.|+.|++||+++++.+..+..+ ..+.+++|+|+
T Consensus       188 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~  264 (433)
T 3bws_A          188 MQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKD  264 (433)
T ss_dssp             GGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTT
T ss_pred             CCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCC
Confidence            9999999999999988877764 4467788888754  345567778999999999999988887765 45899999999


Q ss_pred             CCcEEEEee--------cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          202 SEWILVTGG--------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       202 ~~~~l~s~s--------~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      ++. +++++        .|+.|++||+++++....                                             
T Consensus       265 g~~-l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~---------------------------------------------  298 (433)
T 3bws_A          265 GKE-LYIAQFSASNQESGGGRLGIYSMDKEKLIDT---------------------------------------------  298 (433)
T ss_dssp             SSE-EEEEEEESCTTCSCCEEEEEEETTTTEEEEE---------------------------------------------
T ss_pred             CCE-EEEEECCCCccccCCCeEEEEECCCCcEEee---------------------------------------------
Confidence            985 45555        488999999986543221                                             


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                                 ..|...+.+++|+|++++ +++++.|++|++||+.+++..    .... ....
T Consensus       299 ---------------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~-~~~~  346 (433)
T 3bws_A          299 ---------------------------IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIP-VFDK  346 (433)
T ss_dssp             ---------------------------EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEE-CSSS
T ss_pred             ---------------------------ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEec-CCCC
Confidence                                       134456888999999975 567799999999999976532    1111 2345


Q ss_pred             ceEEEeeCCCcEEEEeCC----------------CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec-CCcE
Q 013545          353 PIQLATTQDPAVVFVPCM----------------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQI  415 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~----------------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~i  415 (441)
                      +..+++++++..+++++.                +.+++||+.+++....+.++ ..+.+++|+|||++|++++. |++|
T Consensus       347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEE
T ss_pred             CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeE
Confidence            677899999988877654                28999999999998888874 57899999999999998775 9999


Q ss_pred             EEeCCCC
Q 013545          416 LVWCPSR  422 (441)
Q Consensus       416 ~vW~~~~  422 (441)
                      ++|+++.
T Consensus       426 ~v~~~~~  432 (433)
T 3bws_A          426 RVYRRDG  432 (433)
T ss_dssp             EEEEETT
T ss_pred             EEEEecC
Confidence            9999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.4e-28  Score=235.93  Aligned_cols=269  Identities=14%  Similarity=0.128  Sum_probs=211.9

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCcEEEEECCC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC  135 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~i~iWd~~~  135 (441)
                      .++++++.|++|++||+.+++..            ..     ..+|. .+.++.+++ ++.++ ++++.|++|++||+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~------------~~-----~~~~~-~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~   63 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVT------------AT-----IPVGS-NPMGAVISP-DGTKVYVANAHSNDVSIIDTAT   63 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEE------------EE-----EECSS-SEEEEEECT-TSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEE------------EE-----eecCC-CcceEEECC-CCCEEEEECCCCCeEEEEECCC
Confidence            46899999999999999865421            01     11333 477888887 67665 7888999999999999


Q ss_pred             CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcE
Q 013545          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI  215 (441)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I  215 (441)
                      ++++..+.....+..+.+++++.  .++++++.++.|++||+++++.+..+..| ..+.+++|+|+++.++++++.|+.|
T Consensus        64 ~~~~~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v  140 (391)
T 1l0q_A           64 NNVIATVPAGSSPQGVAVSPDGK--QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTV  140 (391)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CeEEEEEECCCCccceEECCCCC--EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEE
Confidence            99999888888888899988643  45566667899999999999988887755 4689999999998776889999999


Q ss_pred             EEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccc
Q 013545          216 RFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS  295 (441)
Q Consensus       216 ~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (441)
                      ++||++++++...+.                                                                 
T Consensus       141 ~~~d~~~~~~~~~~~-----------------------------------------------------------------  155 (391)
T 1l0q_A          141 SVINTVTKAVINTVS-----------------------------------------------------------------  155 (391)
T ss_dssp             EEEETTTTEEEEEEE-----------------------------------------------------------------
T ss_pred             EEEECCCCcEEEEEe-----------------------------------------------------------------
Confidence            999998765433221                                                                 


Q ss_pred             ccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC----C
Q 013545          296 SQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----M  370 (441)
Q Consensus       296 ~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  370 (441)
                            . ...+.+++|+|++++| ++++.|++|++||+.+++...    .. .....+..+++++++..+++++    .
T Consensus       156 ------~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~  223 (391)
T 1l0q_A          156 ------V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID----TV-KVEAAPSGIAVNPEGTKAYVTNVDKYF  223 (391)
T ss_dssp             ------C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EE-ECSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             ------c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE----EE-ecCCCccceEECCCCCEEEEEecCcCC
Confidence                  1 1236789999999987 678889999999998865321    11 1234556788999998887764    4


Q ss_pred             CceEEEEccCCceEeeecccccceEEEEEcCCCCeE-EEeecCCcEEEeCCCCCCC
Q 013545          371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l-~s~s~D~~i~vW~~~~~~~  425 (441)
                      ..+++||+.+++.+..+..|.. +.+++|+||+++| ++++.|+.|++|++.++..
T Consensus       224 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          224 NTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             CEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence            7899999999999888888764 7999999999987 6788999999999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.7e-28  Score=226.65  Aligned_cols=243  Identities=19%  Similarity=0.301  Sum_probs=196.0

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..+|...|.++.+ + ++.+|++|+.|++|++||+.++.....+. +.+.+.++.++++.   .+|++++.|+.|++|++
T Consensus        14 l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           14 LKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK---ELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             ECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT---TEEEEEETTSCEEEEET
T ss_pred             hhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC---CEEEEecCCCeEEEEEe
Confidence            4589999999988 5 68899999999999999999888776655 46778899998854   58999999999999998


Q ss_pred             CCC---ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          178 ASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       178 ~~~---~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      ...   +.+..+.+|...|.++.|.  ++ .+++++.|+.|++||.  +.....                          
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d~--~~~~~~--------------------------  137 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWKE--GSLVYN--------------------------  137 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEET--TEEEEE--------------------------
T ss_pred             eecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEcC--CcEEEe--------------------------
Confidence            765   5567889999999999994  34 5789999999999992  221111                          


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~  333 (441)
                                                                   ...|..++.+++|+| ++.++++++.|++|++||.
T Consensus       138 ---------------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  172 (313)
T 3odt_A          138 ---------------------------------------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN  172 (313)
T ss_dssp             ---------------------------------------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             ---------------------------------------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence                                                         234667899999998 9999999999999999994


Q ss_pred             CCCCceeeeeeeEEe-ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545          334 ESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       334 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                      ...      ...... +......+++++++.++.....+.+++||+.+++.+..+.+|..+|.+++|+|++ .|++++.|
T Consensus       173 ~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d  245 (313)
T 3odt_A          173 DKV------IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED  245 (313)
T ss_dssp             TEE------EEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETT
T ss_pred             Cce------EEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecC
Confidence            321      112222 3445567888888884444455789999999999999999999999999999999 69999999


Q ss_pred             CcEEEeCCCCCCCCCcc
Q 013545          413 RQILVWCPSRHISDGVD  429 (441)
Q Consensus       413 ~~i~vW~~~~~~~~~~~  429 (441)
                      +.|++|++.+++.....
T Consensus       246 g~v~iwd~~~~~~~~~~  262 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVI  262 (313)
T ss_dssp             SEEEEECTTTCCEEEEE
T ss_pred             CEEEEEECCCCceeEEE
Confidence            99999999888755443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=7.6e-29  Score=240.81  Aligned_cols=260  Identities=16%  Similarity=0.266  Sum_probs=199.4

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.+|.+.|++++|+|.++++|++|+.||+|+|||+.++.....     ....+     ....+|...|.++.|+|....
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----~~~~~-----~~~~~h~~~v~~~~~~p~~~~  145 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----LREPV-----ITLEGHTKRVGIVAWHPTAQN  145 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----BCSCS-----EEEECCSSCEEEEEECSSBTT
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----cCCce-----EEecCCCCeEEEEEECcCCCC
Confidence            45689999999999975678999999999999999986632110     00011     123479999999999985447


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCCCC-
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDG-  192 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~~~-  192 (441)
                      +|++|+.|++|++||+.+++.+..+.   +.+.+.++.+++++   .+|++++.|+.|++||+++++.+..+ .+|.+. 
T Consensus       146 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (402)
T 2aq5_A          146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG---ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR  222 (402)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS---SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred             EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC---CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence            99999999999999999999988873   45678899998854   47899999999999999999998888 788876 


Q ss_pred             eEEEEEecCCCcEEEEe---ecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          193 IMTVEWSTSSEWILVTG---GCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~---s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      +.++.|+|++. +|++|   +.|+.|++||+++... ....                                       
T Consensus       223 ~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~---------------------------------------  262 (402)
T 2aq5_A          223 PVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQ---------------------------------------  262 (402)
T ss_dssp             CCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEE---------------------------------------
T ss_pred             ceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEE---------------------------------------
Confidence            89999999986 57787   7899999999976421 0000                                       


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETVR  347 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~~~  347 (441)
                                                     ...|...+.+++|+|++.+|+ +|+.|++|++||+.+++.....+....
T Consensus       263 -------------------------------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~  311 (402)
T 2aq5_A          263 -------------------------------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS  311 (402)
T ss_dssp             -------------------------------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred             -------------------------------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence                                           012445688999999999986 566899999999998764222222221


Q ss_pred             eccCcceEEEeeCCCcEEEEeCCCceEEEEccCCce
Q 013545          348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT  383 (441)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~  383 (441)
                       .......+++++++..+++ ....+++|++.+++.
T Consensus       312 -~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          312 -SKESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC  345 (402)
T ss_dssp             -CSSCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred             -cCCcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence             2356677889998877654 445899999987654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.3e-28  Score=231.36  Aligned_cols=260  Identities=15%  Similarity=0.247  Sum_probs=208.7

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ..+|+..|.++.|++ ++.+|++|+.|++|++||+.+++.+..+. +.+.+..+.++++.   .+|++++.|+.|++||+
T Consensus        28 l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           28 LTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT---KYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTTEEEEEET
T ss_pred             EEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC---CEEEEEeCCCeEEEEEC
Confidence            358999999999987 78999999999999999999999888876 45678889998853   48899999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecC-----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D-----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      ++++.+..+. |...|.++.|+|+++. +++++.+     +.|++||++.......+.....                  
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~------------------  163 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSE------------------  163 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS------------------
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeeccccc------------------
Confidence            9999988887 8899999999999984 6788888     9999999875432111100000                  


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeecc--CeEEEEEccCCCEEEEeecCCcEEE
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG--AVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                                                                ........|.+  .+.+++|+|++.+|++++.|+.|++
T Consensus       164 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  201 (369)
T 3zwl_B          164 ------------------------------------------EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK  201 (369)
T ss_dssp             ------------------------------------------SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred             ------------------------------------------ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence                                                      00001123444  7999999999999999999999999


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      ||+.+....   ......+......+++++++..+++++. +.+++||+.+++....+. |...+.+++|+|++++++++
T Consensus       202 ~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~  277 (369)
T 3zwl_B          202 YDVSNNYEY---VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILG  277 (369)
T ss_dssp             EETTTTTEE---EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEE
T ss_pred             EECCCCcEe---EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEe
Confidence            999874322   2233334556677899999998887754 689999999999988888 78889999999999999999


Q ss_pred             ecCC--------------cEEEeCCCCCCCCCc
Q 013545          410 GNDR--------------QILVWCPSRHISDGV  428 (441)
Q Consensus       410 s~D~--------------~i~vW~~~~~~~~~~  428 (441)
                      +.++              .|++|+..++.....
T Consensus       278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  310 (369)
T 3zwl_B          278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR  310 (369)
T ss_dssp             ECCC-------------CEEEEEETTTCCEEEE
T ss_pred             ecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence            9988              899999987765443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-29  Score=238.09  Aligned_cols=229  Identities=10%  Similarity=0.111  Sum_probs=175.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC---------CCceeee
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA---------SGAISQT  185 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~---------~~~~~~~  185 (441)
                      ++.+|+||+.|++|++||+.+++.+..+. .+.+..+.++|.      +++++.|+.|++|+..         +++.++.
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~  119 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDSKTNKVLRE  119 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc------eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence            56789999999999999999998877665 223444444442      8899999999999665         5554444


Q ss_pred             ec-CCCCCeEEEEEec--CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          186 LS-GHRDGIMTVEWST--SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       186 l~-~h~~~v~~v~fsp--~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      +. +|.+.|.+++|+|  +++ +|++++.||+|++||++++++.....                                
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~--------------------------------  166 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHS--------------------------------  166 (343)
T ss_dssp             EECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEEC--------------------------------
T ss_pred             eecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEe--------------------------------
Confidence            44 7889999999999  887 57899999999999998765533221                                


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                                                            ..|...|++++|+|+|.+|++|+.|++|++||+++++.... 
T Consensus       167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~-  207 (343)
T 3lrv_A          167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS-  207 (343)
T ss_dssp             --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE-
T ss_pred             --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc-
Confidence                                                  11334588999999999999999999999999998764311 


Q ss_pred             eeeEEe-ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecc---cccceE--EEEEcCCCCeEEEeec-CCcE
Q 013545          343 FETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG---HYEYVN--CCCFSSQDQELYTGGN-DRQI  415 (441)
Q Consensus       343 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~g---h~~~v~--~v~fspd~~~l~s~s~-D~~i  415 (441)
                        .... +......+++++++..+++++.+.+++||+.+++...++..   |..++.  +++|+|+|++|++++. |+.|
T Consensus       208 --~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i  285 (343)
T 3lrv_A          208 --RFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL  285 (343)
T ss_dssp             --ECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEE
T ss_pred             --EEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcE
Confidence              1222 45667788999999999998888999999998877665544   555555  6999999999999998 9999


Q ss_pred             EEeCCCCCC
Q 013545          416 LVWCPSRHI  424 (441)
Q Consensus       416 ~vW~~~~~~  424 (441)
                      +||+.....
T Consensus       286 ~v~~~~~~~  294 (343)
T 3lrv_A          286 TIYKFDKKT  294 (343)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEEcccc
Confidence            999886543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.2e-27  Score=233.96  Aligned_cols=261  Identities=19%  Similarity=0.295  Sum_probs=192.8

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+|...|++|+|+| ++++|++|+.||+|+|||+.+++..                 ....+|...|.++.+   ++.+|
T Consensus       144 ~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~s~---~~~~l  202 (420)
T 4gga_A          144 EQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL-----------------RNMTSHSARVGSLSW---NSYIL  202 (420)
T ss_dssp             CSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEE---ETTEE
T ss_pred             cCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEE-----------------EEEeCCCCceEEEee---CCCEE
Confidence            36788999999997 6889999999999999999866421                 123478888888776   46799


Q ss_pred             EEEeCCCcEEEEECCCCe-EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc----eeeeecCCCCCe
Q 013545          120 VTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA----ISQTLSGHRDGI  193 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~----~~~~l~~h~~~v  193 (441)
                      ++|+.|+++++||..... .+..+. +...+..+.+.+.+   .++++++.|+.|++|++.+++    .+.....|...|
T Consensus       203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g---~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V  279 (420)
T 4gga_A          203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG---RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV  279 (420)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred             EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC---CeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence            999999999999987644 344444 34556667777653   489999999999999998875    345677899999


Q ss_pred             EEEEEecCCCcEEEEe--ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          194 MTVEWSTSSEWILVTG--GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~--s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      .+++|+|.+..+++++  +.|++|++||++++.+...+.                                         
T Consensus       280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-----------------------------------------  318 (420)
T 4gga_A          280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------------------------------------  318 (420)
T ss_dssp             EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred             eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-----------------------------------------
Confidence            9999999988777664  579999999999876544331                                         


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee--cCCcEEEeeCCCCCceeeeeeeEEec
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG--SDSRIRLWDVESGRNTLVNFETVRLQ  349 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs--~D~~i~~wd~~~~~~~~~~~~~~~~~  349 (441)
                                                     +...+.++.|+|++..+++++  .|++|++||+.+++..    ..+..+
T Consensus       319 -------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v----~~l~gH  363 (420)
T 4gga_A          319 -------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV----AELKGH  363 (420)
T ss_dssp             -------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE----EEECCC
T ss_pred             -------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE----EEEcCC
Confidence                                           123578899999999988765  7999999999987642    233445


Q ss_pred             cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEc
Q 013545          350 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFS  400 (441)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs  400 (441)
                      ...+..++++|++..+++++. +.+++||+.+.........|...+....|.
T Consensus       364 ~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~  415 (420)
T 4gga_A          364 TSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI  415 (420)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence            667778999999999888765 689999998877766666666554444443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=5.8e-28  Score=228.25  Aligned_cols=248  Identities=18%  Similarity=0.316  Sum_probs=199.2

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCc
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQ  171 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~  171 (441)
                      +++||++.|++++|+|.++++|||||.|++|++||+.+.+     +...+. +.+.+.++.+++++   .+|++++.|+.
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg---~~l~s~~~d~~  109 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG---QFALSGSWDGT  109 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC---CEEEEEccccc
Confidence            4679999999999998667899999999999999987643     233333 34678888898854   48999999999


Q ss_pred             EEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       172 I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      |++|+............+...+....++|+++. |++++.|+.+++||++.......                       
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~-----------------------  165 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTV-----------------------  165 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEE-----------------------
T ss_pred             ceEEeecccceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEE-----------------------
Confidence            999999999888888889999999999999875 78999999999999864321110                       


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--CEEEEeecCCcEE
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIR  329 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~  329 (441)
                                                                     ...+|...+..++|++++  .++++++.|++|+
T Consensus       166 -----------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~  198 (340)
T 4aow_A          166 -----------------------------------------------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK  198 (340)
T ss_dssp             -----------------------------------------------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred             -----------------------------------------------EeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence                                                           012466778999999875  5789999999999


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT  408 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s  408 (441)
                      +||+.+++..    .....+......++++|++.++++++. +.+++||+.+++.+..+.+| ..|.+++|+|++. +++
T Consensus       199 i~d~~~~~~~----~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~  272 (340)
T 4aow_A          199 VWNLANCKLK----TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRY-WLC  272 (340)
T ss_dssp             EEETTTTEEE----EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSS-EEE
T ss_pred             EEECCCCcee----eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCc-eee
Confidence            9999986532    222234455667889999999888765 68999999999999888865 5799999999864 556


Q ss_pred             eecCCcEEEeCCCCCCC
Q 013545          409 GGNDRQILVWCPSRHIS  425 (441)
Q Consensus       409 ~s~D~~i~vW~~~~~~~  425 (441)
                      ++.|++|++|++.+...
T Consensus       273 ~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          273 AATGPSIKIWDLEGKII  289 (340)
T ss_dssp             EEETTEEEEEETTTTEE
T ss_pred             ccCCCEEEEEECCCCeE
Confidence            77899999999986643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.7e-28  Score=240.99  Aligned_cols=254  Identities=16%  Similarity=0.148  Sum_probs=189.2

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      .+|...|++++|+|.++.+||+|+.||+|+|||+.++.....+.   +.+.|.++.|+|..  ..+|++|+.|+.|++||
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~--~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN--TNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC--TTEEEEECSSSCEEEEE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC--CCEEEEEeCCCEEEEee
Confidence            36888899999999788899999999999999998776544443   45678899998742  35899999999999999


Q ss_pred             CCCCceeeeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          177 IASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       177 l~~~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      ++++.......  .+...+.+++|+|+++ +|++|+.||+|++||++... +                            
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~-~----------------------------  243 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKE-L----------------------------  243 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCB-C----------------------------
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcce-e----------------------------
Confidence            98775543333  3445678999999987 57999999999999986311 0                            


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDV  333 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~  333 (441)
                                                                 ..+.+|...|++|+|+|++. +|++|+.|++|++||+
T Consensus       244 -------------------------------------------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~  280 (435)
T 4e54_B          244 -------------------------------------------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL  280 (435)
T ss_dssp             -------------------------------------------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred             -------------------------------------------EEEecccceEEeeeecCCCceEEEEecCcceeeEEec
Confidence                                                       01235788899999999986 6889999999999999


Q ss_pred             CCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc------eEEEEEcCCCCeE
Q 013545          334 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY------VNCCCFSSQDQEL  406 (441)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~------v~~v~fspd~~~l  406 (441)
                      .+.+.... +.....+......+++++++..+++++. +.+++||+.+++....+.+|...      +..+.|+|++..+
T Consensus       281 ~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (435)
T 4e54_B          281 RQVRGKAS-FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI  359 (435)
T ss_dssp             TTCCSSSC-CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred             ccccccce-EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEE
Confidence            87653211 1111223345566788999999888765 68999999999888877766532      2344566665555


Q ss_pred             EEee------------cCCcEEEeCCCCCCCCCcc
Q 013545          407 YTGG------------NDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       407 ~s~s------------~D~~i~vW~~~~~~~~~~~  429 (441)
                      ++++            .+++|++|+..++......
T Consensus       360 ~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             EEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            5443            3468999999987754443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-28  Score=238.87  Aligned_cols=261  Identities=11%  Similarity=0.084  Sum_probs=192.2

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +.+|...|++++|+|+ |       .|+++.+|+.+.....                   ..+|...|.+++|+| +|.+
T Consensus        48 l~gh~~~v~~V~FsPd-g-------~~~~~~~~~~~~~~~~-------------------~~~~~~~V~~vawSP-dG~~   99 (588)
T 2j04_A           48 INCNSKNLFHVKEFPL-E-------FENKLDFELAQQNGLL-------------------NSQPVCYPRVCKPSP-IDDW   99 (588)
T ss_dssp             CSSBGGGTEEEEEECC-C-------CCCTTTTSCCCSSCSS-------------------TTSCSCCEEEEEECS-SSSC
T ss_pred             ecCCCccEEEEEECCC-C-------CcceEEEEeCCCceEe-------------------ecCCCCcEEEEEECC-CCCE
Confidence            3799999999999985 4       5777777765422211                   114567899999998 8999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCC-----eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-------eeee
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPG-----KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-------SQTL  186 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-------~~~l  186 (441)
                      ||+++.|++|++||...  ++..+.+..     .+.+++|+|++   .+||+|+.||+|++||+++++.       +.++
T Consensus       100 LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG---~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti  174 (588)
T 2j04_A          100 MAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIE---SSIVVGNEDGELQFFSIRKNSENTPEFYFESSI  174 (588)
T ss_dssp             EEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSS---SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred             EEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCC---CEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence            99999999999999654  555555222     38899999965   4899999999999999999863       5666


Q ss_pred             ----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          187 ----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       187 ----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                          .+|.+.|.+++|+|++   +++++.|++|++||+..+.+...                                  
T Consensus       175 ~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~----------------------------------  217 (588)
T 2j04_A          175 RLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPV----------------------------------  217 (588)
T ss_dssp             ECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCC----------------------------------
T ss_pred             ecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccc----------------------------------
Confidence                7788999999999997   57889999999999865421000                                  


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccc-eeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRA-TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~  341 (441)
                                                        .... .+|...|.+|+|+  |..||+++ |++|++||+.+++....
T Consensus       218 ----------------------------------~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~  260 (588)
T 2j04_A          218 ----------------------------------SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL  260 (588)
T ss_dssp             ----------------------------------EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE
T ss_pred             ----------------------------------eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE
Confidence                                              0001 2466779999999  68999887 69999999997653211


Q ss_pred             eeeeEEeccCcceEEEe--eCCCcEEEEeCCCceEEEEccC-----------------------CceEeeecccccceEE
Q 013545          342 NFETVRLQTSKPIQLAT--TQDPAVVFVPCMTAVKAFDIWS-----------------------GKTCLTFRGHYEYVNC  396 (441)
Q Consensus       342 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~wd~~~-----------------------~~~~~~l~gh~~~v~~  396 (441)
                        .  ..+......+++  ++++..++++..++.|+|....                       ++.+..+.+ ...|.+
T Consensus       261 --~--~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~  335 (588)
T 2j04_A          261 --K--TGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHG  335 (588)
T ss_dssp             --E--CSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEE
T ss_pred             --E--cCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEE
Confidence              1  124455566788  8888888887754338887522                       122334444 667999


Q ss_pred             EEEcCCCCeEEEeec
Q 013545          397 CCFSSQDQELYTGGN  411 (441)
Q Consensus       397 v~fspd~~~l~s~s~  411 (441)
                      ++|||||+.+|+++.
T Consensus       336 va~SPdG~~lA~~~~  350 (588)
T 2j04_A          336 ISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEECTTSSEEEEEEE
T ss_pred             EEECCCCCEEEEEEe
Confidence            999999999998863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=3.4e-27  Score=231.75  Aligned_cols=235  Identities=23%  Similarity=0.394  Sum_probs=189.3

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~  179 (441)
                      +|...|.++.+   +++++++|+.|++|++||+.+++.+..+. +.+.+.++.+     +..+|++|+.|+.|++||+++
T Consensus       131 ~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-----CCCEEEEEcCCCeEEEEECCC
Confidence            57777877765   68899999999999999999999888776 3456777666     235899999999999999999


Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                      ++.+..+.+|...|.++.|+++   .+++|+.||+|++||++++......                              
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~------------------------------  249 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLR------------------------------  249 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEE------------------------------
T ss_pred             CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceee------------------------------
Confidence            9999999999999999999753   5799999999999999764321100                              


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  339 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~  339 (441)
                                                            ....+|...|.+++|  ++.+|++|+.|++|++||+.+++..
T Consensus       250 --------------------------------------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~  289 (435)
T 1p22_A          250 --------------------------------------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV  289 (435)
T ss_dssp             --------------------------------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             --------------------------------------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE
Confidence                                                  012357788999998  7889999999999999999987632


Q ss_pred             eeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          340 LVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                          .....+......+.+  ++..+++++ .+.+++||+.+++.+.++.+|...|.+++|  ++++|++|+.|++|++|
T Consensus       290 ----~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vw  361 (435)
T 1p22_A          290 ----RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW  361 (435)
T ss_dssp             ----EEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             ----EEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence                222223333344444  456666665 478999999999999999999999999999  78999999999999999


Q ss_pred             CCCCCC
Q 013545          419 CPSRHI  424 (441)
Q Consensus       419 ~~~~~~  424 (441)
                      ++.++.
T Consensus       362 d~~~~~  367 (435)
T 1p22_A          362 DLVAAL  367 (435)
T ss_dssp             EHHHHT
T ss_pred             ECCCCC
Confidence            986544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1e-27  Score=229.97  Aligned_cols=255  Identities=10%  Similarity=0.129  Sum_probs=186.2

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEe-----------eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccce
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSG-----------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI  106 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~-----------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  106 (441)
                      .+.+|...|.+++++.   +.+++|           +.|+++|+|++.+...     ++..   +..........+...+
T Consensus        68 ~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~  136 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVND-----QLEF---LTSVDFDASTNADDYT  136 (365)
T ss_dssp             ECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-----EEEE---EEEECSSCCCCTTCCE
T ss_pred             EccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCc-----eEEE---eeeeceeecCCcccCE
Confidence            3568999999998863   355554           5678899998765431     1110   0011111123455568


Q ss_pred             eEEEEeeCCCCEEE--EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          107 SSAIWYPVDTGLFV--TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       107 ~~~~~~~~~~~~l~--sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      .+++|+| |+.+++  |++.|++|||||+.+++++..+.+.+.+.+++|+|++   .++++++ ++.+.+|+..+++.+.
T Consensus       137 ~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg---~~l~s~s-~~~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          137 KLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDG---KVVAYIT-GSSLEVISTVTGSCIA  211 (365)
T ss_dssp             EEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTS---SEEEEEC-SSCEEEEETTTCCEEE
T ss_pred             EEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCC---ceEEecc-ceeEEEEEeccCccee
Confidence            8888887 788875  5558999999999999999988888889999999865   4788877 5567888887776543


Q ss_pred             --eecCCCCCeEEEEEecCCCcEEEEeecCC----cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          185 --TLSGHRDGIMTVEWSTSSEWILVTGGCDG----AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       185 --~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg----~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                        ...+|...|.+++|+|+++ .+++++.|+    .+++||+.........                             
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-----------------------------  261 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLR-----------------------------  261 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEE-----------------------------
T ss_pred             eeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceeccee-----------------------------
Confidence              4567999999999999997 468888887    6888887653211100                             


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                                            .....+|..+|++|+|+|||++||+|+.|++|+|||+.+++.
T Consensus       262 --------------------------------------~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~  303 (365)
T 4h5i_A          262 --------------------------------------SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM  303 (365)
T ss_dssp             --------------------------------------EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred             --------------------------------------eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence                                                  001245778899999999999999999999999999998763


Q ss_pred             eeeeeeeE-EeccCcceEEEeeCCCcEEEEeCC-CceEEEEccC
Q 013545          339 TLVNFETV-RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWS  380 (441)
Q Consensus       339 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~  380 (441)
                      .    ... ..+...+..++++||+.++++++. .++|+|++..
T Consensus       304 ~----~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          304 S----KIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             E----EEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             E----EEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            2    121 234566778999999999998765 7999999854

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-27  Score=229.28  Aligned_cols=212  Identities=18%  Similarity=0.304  Sum_probs=173.3

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC--CCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN--CTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      ..+|...|.+++|++ ++.+||+|+.|++|++||+.  ++..+..+. +.+.+.++.+++.. ...+|++++.|+.|++|
T Consensus         7 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            7 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLIW   84 (379)
T ss_dssp             EEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSCEEEE
T ss_pred             ecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCEEEEE
Confidence            458999999999987 78899999999999999997  444555554 45678888887652 13589999999999999


Q ss_pred             ECCCCc--eeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       176 dl~~~~--~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      |+++++  .+..+.+|...|.+++|+|+  +. +|++++.|+.|++||++.......                       
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~-----------------------  140 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP-----------------------  140 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCE-----------------------
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceee-----------------------
Confidence            999987  67788899999999999999  76 578999999999999975421100                       


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-------------CCCE
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-------------DGMY  318 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------------dg~~  318 (441)
                                                                    .....|...|++++|+|             ++.+
T Consensus       141 ----------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T 3jrp_A          141 ----------------------------------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  174 (379)
T ss_dssp             ----------------------------------------------EEEECCTTCEEEEEECCCC----------CTTCE
T ss_pred             ----------------------------------------------EEecCCCCceEEEEEcCccccccccccCCCCCCE
Confidence                                                          01235677899999999             6999


Q ss_pred             EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEE
Q 013545          319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC  398 (441)
Q Consensus       319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~  398 (441)
                      |++++.|++|++||+.+++...                                         .....+.+|..+|.+++
T Consensus       175 l~~~~~dg~i~i~d~~~~~~~~-----------------------------------------~~~~~~~~h~~~v~~~~  213 (379)
T 3jrp_A          175 FVTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDWVRDVA  213 (379)
T ss_dssp             EEEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSCEEEEE
T ss_pred             EEEEeCCCeEEEEEecCCCcce-----------------------------------------eeEEEEecccCcEeEEE
Confidence            9999999999999987654211                                         11245578999999999


Q ss_pred             EcCC---CCeEEEeecCCcEEEeCCCCC
Q 013545          399 FSSQ---DQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       399 fspd---~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      |+|+   +++|++++.|++|++|++.++
T Consensus       214 ~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          214 WSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            9999   899999999999999999875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=4.6e-26  Score=219.93  Aligned_cols=286  Identities=15%  Similarity=0.100  Sum_probs=213.7

Q ss_pred             eecCCCCceeEEEccCCCCcEE-EEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      .+.+| ..+.+++|+|+ +++| ++++.|++|++||+.+++..            ...     ..| ..+.++.++| ++
T Consensus        27 ~~~~~-~~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~------------~~~-----~~~-~~v~~~~~sp-dg   85 (391)
T 1l0q_A           27 TIPVG-SNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVI------------ATV-----PAG-SSPQGVAVSP-DG   85 (391)
T ss_dssp             EEECS-SSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEE------------EEE-----ECS-SSEEEEEECT-TS
T ss_pred             EeecC-CCcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEE------------EEE-----ECC-CCccceEECC-CC
Confidence            34455 45899999975 5554 88889999999999765421            011     112 2788888887 67


Q ss_pred             CEE-EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          117 GLF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       117 ~~l-~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      +++ ++++.|++|++||+.+++.+..+.....+..+.+++++  ..++++++.++.|++||+.+++.+..+..| ..+.+
T Consensus        86 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~  162 (391)
T 1l0q_A           86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG--KKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG  162 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcce
Confidence            666 56667899999999999998888877778888888864  345578888999999999999988888766 45699


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +.|+|+++.++++++.|+.|++||++++++...+                                              
T Consensus       163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----------------------------------------------  196 (391)
T 1l0q_A          163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----------------------------------------------  196 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------------------
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE----------------------------------------------
Confidence            9999999877788889999999999876443322                                              


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee---cCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs---~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                                .+...+.+++|+|++++|++++   .|++|++||+.+++..    ..... ...
T Consensus       197 --------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~-~~~  245 (391)
T 1l0q_A          197 --------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPV-GPD  245 (391)
T ss_dssp             --------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE----EEEEC-CSS
T ss_pred             --------------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE----EEEec-CCC
Confidence                                      1223578899999999998887   6899999999876532    12222 334


Q ss_pred             ceEEEeeCCCcEEEEe-C-CCceEEEEccCCceEeeecccccceE---EEEEcC------------CC----------Ce
Q 013545          353 PIQLATTQDPAVVFVP-C-MTAVKAFDIWSGKTCLTFRGHYEYVN---CCCFSS------------QD----------QE  405 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~-~-~~~~~~wd~~~~~~~~~l~gh~~~v~---~v~fsp------------d~----------~~  405 (441)
                      +..+++++++..+++. . ...+++||+.+++...++..|..+..   .+.+.|            +.          ..
T Consensus       246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~  325 (391)
T 1l0q_A          246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQ  325 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEE
T ss_pred             ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEE
Confidence            5678899999877554 3 36899999999999998888766532   123332            21          33


Q ss_pred             EEEeecCCcEEEeCCCCCC
Q 013545          406 LYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       406 l~s~s~D~~i~vW~~~~~~  424 (441)
                      +.+.+.|.++++|+...+.
T Consensus       326 ~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          326 FTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             EEECCBSCSEEEEECSSSC
T ss_pred             EEeCCCCceEEEEECCCCc
Confidence            6677789999999997665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1.2e-26  Score=221.26  Aligned_cols=250  Identities=18%  Similarity=0.256  Sum_probs=186.0

Q ss_pred             ccCcccceeEEEEeeCC--CCEEEEEeCCCcEEEEECCC-CeEE-EEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545           99 EHGHKYAISSAIWYPVD--TGLFVTGSYDHYVKVWDTNC-TRVV-MNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~--~~~l~sgs~D~~i~iWd~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      ..+|...|.++.|+|..  +.+|++|+.|++|++||+.+ +..+ ..+. +.+.+.++.++++.   .+|++++.|+.|+
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~v~  111 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG---SKVFTASCDKTAK  111 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS---SEEEEEETTSEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC---CEEEEEcCCCcEE
Confidence            45899999999999854  68999999999999999987 4443 3443 56778999999853   4889999999999


Q ss_pred             EEECCCCceeeeecCCCCCeEEEEE--ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          174 LCDIASGAISQTLSGHRDGIMTVEW--STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       174 vwdl~~~~~~~~l~~h~~~v~~v~f--sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      +||+++++.+. +.+|...|.++.|  +|++. +|++++.||.|++||++++++...+.                     
T Consensus       112 iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------  168 (368)
T 3mmy_A          112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQ---------------------  168 (368)
T ss_dssp             EEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEE---------------------
T ss_pred             EEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEe---------------------
Confidence            99999998765 5679999999999  77776 57899999999999998764433221                     


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  331 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w  331 (441)
                                                                         ....+.++.+.  ...+++++.|+.+++|
T Consensus       169 ---------------------------------------------------~~~~~~~~~~~--~~~~~~~~~~~~i~~~  195 (368)
T 3mmy_A          169 ---------------------------------------------------LPERCYCADVI--YPMAVVATAERGLIVY  195 (368)
T ss_dssp             ---------------------------------------------------CSSCEEEEEEE--TTEEEEEEGGGCEEEE
T ss_pred             ---------------------------------------------------cCCCceEEEec--CCeeEEEeCCCcEEEE
Confidence                                                               11234455555  4578889999999999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCc----EEEEe-CCCceEEEEccCC---ceEeeeccccc-----------
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPA----VVFVP-CMTAVKAFDIWSG---KTCLTFRGHYE-----------  392 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~wd~~~~---~~~~~l~gh~~-----------  392 (441)
                      ++............  ........+.+.++..    .++++ ..+.+++|++...   +....+.+|..           
T Consensus       196 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (368)
T 3mmy_A          196 QLENQPSEFRRIES--PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI  273 (368)
T ss_dssp             ECSSSCEEEEECCC--SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred             Eeccccchhhhccc--cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence            99875432211110  0111122233333222    14444 4478999999887   55677888877           


Q ss_pred             -ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          393 -YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       393 -~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                       +|.+++|+|++++|++|+.|+.|++|++.++......
T Consensus       274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence             7999999999999999999999999999987654433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=4.5e-27  Score=227.80  Aligned_cols=265  Identities=11%  Similarity=0.115  Sum_probs=172.1

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee-------C
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-------V  114 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-------~  114 (441)
                      |.+.+....+ +.++++|++|+.|++|+|||+.++....            ........||++.|.++.|+|       .
T Consensus        88 ~~~~~~~~~~-~~~~~~las~~~d~~v~lw~~~~~~~~~------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~  154 (393)
T 4gq1_A           88 HDGDGNVNSS-PVYSLFLACVCQDNTVRLIITKNETIIT------------QHVLGGKSGHHNFVNDIDIADVYSADNRL  154 (393)
T ss_dssp             ---------C-CEEEEEEEEEETTSCEEEEEEETTEEEE------------EEEECTTTSCSSCEEEEEEEEEECTTCSE
T ss_pred             cCCCcceeec-CCCCCEEEEEeCCCcEEEEECCCCccce------------eeeecccCCCCCceEEEEEccccccccCC
Confidence            4444444444 3467789999999999999987653210            001134569999999999986       3


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEE-EEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee--------
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVV-MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT--------  185 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~--------  185 (441)
                      |+.+|||||.|++|||||+.++.++ ..+.+.+.+.+++|+|..  ..+|++|+.|+.|++||+.+++....        
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~  232 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN--PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK  232 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE--EEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCC--CceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence            6789999999999999999877654 455677889999999853  35799999999999999988754321        


Q ss_pred             -----------------ecCCCCCeEEEEEe-cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccc
Q 013545          186 -----------------LSGHRDGIMTVEWS-TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKS  247 (441)
Q Consensus       186 -----------------l~~h~~~v~~v~fs-p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (441)
                                       ..+|...|.++.|+ |+++ .+++++.|+++++||+..+.....+.......           
T Consensus       233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~-----------  300 (393)
T 4gq1_A          233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKL-----------  300 (393)
T ss_dssp             CCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC---------------------------
T ss_pred             cceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCcc-----------
Confidence                             24688889999997 6776 57899999999999998654332221110000           


Q ss_pred             cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--CCCEEEEeecC
Q 013545          248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSD  325 (441)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D  325 (441)
                                           ..+...+..+                     ...+........|+|  ++.++++|+.|
T Consensus       301 ---------------------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~sgs~D  338 (393)
T 4gq1_A          301 ---------------------GPKNLLPNVQ---------------------GISLFPSLLGACPHPRYMDYFATAHSQH  338 (393)
T ss_dssp             ------------------------CCSCSEE---------------------EECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred             ---------------------ccEEEccccc---------------------cccccCcceeEEEccCCCCEEEEEECCC
Confidence                                 0000000000                     000111222334444  45577889999


Q ss_pred             CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEcc
Q 013545          326 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW  379 (441)
Q Consensus       326 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  379 (441)
                      ++|++||+.+++....    ...+......++++||+..+++++.+++.+|.++
T Consensus       339 g~V~lwd~~~~~~~~~----~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          339 GLIQLINTYEKDSNSI----PIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             TEEEEEETTCTTCCEE----EEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             CEEEEEECCCCcEEEE----ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence            9999999998764322    2223455667999999999999988899888774

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=7.5e-27  Score=220.39  Aligned_cols=269  Identities=17%  Similarity=0.213  Sum_probs=176.1

Q ss_pred             eeecCCCCceeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           37 EIVSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ..+.+|.+.|++++|+|. ++++|++|+.||+|++||+.++.......   ....+     ....+|...|.++.|+|..
T Consensus        51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~~-----~~~~~~~~~v~~~~~~~~~  122 (351)
T 3f3f_A           51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR---RWNKL-----CTLNDSKGSLYSVKFAPAH  122 (351)
T ss_dssp             EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC---SEEEE-----EEECCCSSCEEEEEECCGG
T ss_pred             ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc---Cccee-----eeecccCCceeEEEEcCCC
Confidence            345689999999999974 47899999999999999997654311000   00111     1234799999999998732


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCeEEEEEe--------------cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          116 -TGLFVTGSYDHYVKVWDTNCTRVVMNFK--------------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       116 -~~~l~sgs~D~~i~iWd~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                       +.+|++++.|++|++||+.+++.+..+.              ....+.++.++|...+..++++++.++.+.+|+...+
T Consensus       123 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~  202 (351)
T 3f3f_A          123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG  202 (351)
T ss_dssp             GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred             CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC
Confidence             7899999999999999998776433221              2345677888887555678999999999999998887


Q ss_pred             ce--eeeecCCCCCeEEEEEecCCC---cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          181 AI--SQTLSGHRDGIMTVEWSTSSE---WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       181 ~~--~~~l~~h~~~v~~v~fsp~~~---~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                      +.  +..+.+|...|.+++|+|++.   .+|++++.||+|++||++.+.+............         .        
T Consensus       203 ~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~--------  265 (351)
T 3f3f_A          203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN---------M--------  265 (351)
T ss_dssp             CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred             ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccccee---------c--------
Confidence            65  677889999999999999972   3689999999999999986543221111000000         0        


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                      ............+... .........       .............+|.+.|++++|+|++++|++|+.|++|++||+.+
T Consensus       266 ~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          266 FDNSADVDMDAQGRSD-SNTEEKAEL-------QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             ---------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cCCCcccccccccccc-cccceeeee-------cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence            0000000000000000 000000000       00000011122456888999999999999999999999999999998


Q ss_pred             CCc
Q 013545          336 GRN  338 (441)
Q Consensus       336 ~~~  338 (441)
                      ++.
T Consensus       338 ~~~  340 (351)
T 3f3f_A          338 SNE  340 (351)
T ss_dssp             TSC
T ss_pred             Ccc
Confidence            653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=5.6e-26  Score=219.84  Aligned_cols=287  Identities=14%  Similarity=0.128  Sum_probs=183.2

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC--CCCE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV--DTGL  118 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~~  118 (441)
                      +|.+.|++++|+|.++++|++++.||+|++||+.++...            ..      ..|...+.++.+.+.  ++.+
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------~~------~~~~~~~~~~~~~~~~~~~~~  158 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------DV------FNFEETVYSHHMSPVSTKHCL  158 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------EE------EECSSCEEEEEECSSCSSCCE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------ee------ccCCCceeeeEeecCCCCCcE
Confidence            599999999999867789999999999999999865421            11      124556777777663  4459


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeee----------
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTL----------  186 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l----------  186 (441)
                      +++++.|+.|++||+.+++.+..+. +.+.+.++.+++..  ..++++++.|+.|++||++++. .+..+          
T Consensus       159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY--DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC--TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC--CcEEEEEcCCCcEEEEECCCCCccccccccccccccee
Confidence            9999999999999999988877776 45678889998864  3478999999999999998765 33333          


Q ss_pred             -----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545          187 -----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP  261 (441)
Q Consensus       187 -----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (441)
                           .+|...|.+++|+|+++ .|++++.||.|++||++++.....+.....                           
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------------  288 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVC---------------------------  288 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCC---------------------------
T ss_pred             eccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceecccccc---------------------------
Confidence                 67999999999999987 478999999999999987543211100000                           


Q ss_pred             CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee
Q 013545          262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~  341 (441)
                                                             ......+........+..+++++.|++|++||+.+++..  
T Consensus       289 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--  327 (408)
T 4a11_B          289 ---------------------------------------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--  327 (408)
T ss_dssp             ---------------------------------------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--
T ss_pred             ---------------------------------------ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--
Confidence                                                   000001111122234556777788999999999987642  


Q ss_pred             eeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCC-CCeEEEeecCCcEEEeC
Q 013545          342 NFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILVWC  419 (441)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd-~~~l~s~s~D~~i~vW~  419 (441)
                        .....+......+++++++..+++++. +.+++|++.+++.+.....+...   ..++|. ...+.+++.|+.+++|+
T Consensus       328 --~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          328 --TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             --EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred             --eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecC
Confidence              222334456677899999998888765 68999999998877655444322   334443 33455778899999997


Q ss_pred             CC
Q 013545          420 PS  421 (441)
Q Consensus       420 ~~  421 (441)
                      .+
T Consensus       403 ~~  404 (408)
T 4a11_B          403 HP  404 (408)
T ss_dssp             --
T ss_pred             Cc
Confidence            65

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=6.4e-26  Score=216.59  Aligned_cols=239  Identities=10%  Similarity=0.059  Sum_probs=176.4

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~  179 (441)
                      .+|...|.+++|+| |+.+|++|+.| .+++||+.++..+......+ +..+.+.+.  .+.++++++.|+.|++||+++
T Consensus        16 ~~h~~~V~~v~fs~-dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQ-DQSCLILSTLK-SFEIYNVHPVAHIMSQEMRH-LSKVRMLHR--TNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             ---CCCCCEEEECT-TSSEEEEECSS-EEEEEEETTEEEEEEEECSC-CCEEEECTT--SSEEEEECSSTTEEEEEETTT
T ss_pred             ccCCCceEEEEECC-CCCEEEEEcCC-EEEEEecCCcceeeeeecCC-eEEEEEcCC--CCEEEEEECCccEEEEEECCC
Confidence            47999999999987 78899988877 57999998877665544432 444555543  234556778889999999999


Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      ++.+..+. |...|.++.|+++.  + +.+ .|+.|++||++++ +++..+                             
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~~--~-~~~-~~~~i~i~d~~~~~~~~~~~-----------------------------  136 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSREF--I-VVS-YGDVISVFKFGNPWKRITDD-----------------------------  136 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSE--E-EEE-ETTEEEEEESSTTCCBSSCC-----------------------------
T ss_pred             CcEEEEEE-CCCceEEEEEcCCE--E-EEE-EcCEEEEEECCCCceeeEEe-----------------------------
Confidence            99988886 67799999999863  3 333 4889999998754 211100                             


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE--eecCCcEEEeeCCCC
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS--AGSDSRIRLWDVESG  336 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~D~~i~~wd~~~~  336 (441)
                                                                ..   +...+++++  .+++.  |+.||+|++||+.++
T Consensus       137 ------------------------------------------~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A          137 ------------------------------------------IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             ------------------------------------------EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-
T ss_pred             ------------------------------------------cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCC
Confidence                                                      00   233456666  55555  789999999999875


Q ss_pred             Ccee-----------ee-eeeEEeccCcceEEEeeCCCcEEEEeCC-Cc-eEEEEccCCceEeeec-c-cccceEEEEEc
Q 013545          337 RNTL-----------VN-FETVRLQTSKPIQLATTQDPAVVFVPCM-TA-VKAFDIWSGKTCLTFR-G-HYEYVNCCCFS  400 (441)
Q Consensus       337 ~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~wd~~~~~~~~~l~-g-h~~~v~~v~fs  400 (441)
                      +...           .. ......+......+++++++.++++++. +. +++||+.+++.+.++. | |...|.+++|+
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             -----------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC
T ss_pred             CccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC
Confidence            4100           00 1223344566778999999999988866 56 9999999999999998 6 99999999999


Q ss_pred             CCCCeEEEeecCCcEEEeCCCCCC
Q 013545          401 SQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       401 pd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      |||++|++++.|++|+||++..+.
T Consensus       250 ~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          250 TDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             TTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCCEEEEEECCCEEEEEEccCCC
Confidence            999999999999999999997653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.6e-26  Score=213.51  Aligned_cols=212  Identities=11%  Similarity=0.123  Sum_probs=140.1

Q ss_pred             CCCceeEEEccCCC----CcEEEEeeCCCcEEEEECCCCcccCC--CCceecccee--EEeec-----ccccCcccceeE
Q 013545           42 HKGSINSLQVDLTE----ERYLLSGASDSSVAVYDVQRATDYEG--GGHIAKHRSV--FVVDK-----QHEHGHKYAISS  108 (441)
Q Consensus        42 H~~~V~~l~~s~~~----~~~l~s~s~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~--~~~~~-----~~~~~h~~~V~~  108 (441)
                      |.+.|++|+|+| +    ++++++++.+  +++|++.+++....  .++   ...+  +.+..     ....+|...+..
T Consensus       110 ~~~~v~sla~sp-d~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~---d~~V~~~~~s~dG~~~~s~~~~~~~v~~  183 (356)
T 2w18_A          110 EIREIRALFCSS-DDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLS---DQQVEVMTFAEDGGGKENQFLMPPEETI  183 (356)
T ss_dssp             SEEEEEEECC-------CCEEEEEEEEE--EEEEEETTTEEEEEESSST---TCEEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred             cccceEEEEECC-CccccccEEEeCCCe--EEEEecCCCcEEEecccCC---CCcEEEEEECCCCceeeeeccCCCceee
Confidence            345788888886 5    5677777642  45555543321100  000   0001  11100     012367777877


Q ss_pred             EEEee--CCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CeeEEEeeccCCCC---------ccEEEEEeCCCcEE
Q 013545          109 AIWYP--VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP----GKVYRTAMSPLAAS---------HMLIAAGTEDVQVR  173 (441)
Q Consensus       109 ~~~~~--~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------~~~las~s~d~~I~  173 (441)
                      +.|++  .++++|||||.|++|||||+++++++.++..+    ..+..++|+|++..         ...+++|+.|++|+
T Consensus       184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred             EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence            77776  35789999999999999999999999888632    23455577775420         01257889999999


Q ss_pred             EEECCCCceeeee-----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545          174 LCDIASGAISQTL-----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL  248 (441)
Q Consensus       174 vwdl~~~~~~~~l-----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (441)
                      +||..+++.+..+     .+|...+.+..++  +. ++++++.|++|||||+.+++++.+++                  
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~------------------  322 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLP------------------  322 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEEC------------------
T ss_pred             EEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEec------------------
Confidence            9999999887665     4787776655555  44 68999999999999999987766552                  


Q ss_pred             ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEeecCCc
Q 013545          249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAGSDSR  327 (441)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~D~~  327 (441)
                                                                           +|... +..++|||||++|+||+.|++
T Consensus       323 -----------------------------------------------------gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          323 -----------------------------------------------------PVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             -----------------------------------------------------CC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             -----------------------------------------------------CCCCCeEEEEEECCCCCEEEEEECCCc
Confidence                                                                 34443 346899999999999999999


Q ss_pred             EEEeeC
Q 013545          328 IRLWDV  333 (441)
Q Consensus       328 i~~wd~  333 (441)
                      |||||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=5.7e-26  Score=222.68  Aligned_cols=229  Identities=20%  Similarity=0.378  Sum_probs=175.1

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.+|...|++|+|+|.+..+|++|+.||+|+|||+..+....         .. ........+|...|.++.|+|.++.
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---------~~-~~~~~~~~~h~~~v~~v~~~p~~~~  245 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH---------RV-IDAKNIFTGHTAVVEDVAWHLLHES  245 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG---------GE-EECSEEECCCSSCEEEEEECSSCTT
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC---------ce-eccceeecCCCCCEeeeEEeCCCCC
Confidence            4568999999999997544499999999999999997643210         00 0011223479999999999987788


Q ss_pred             EEEEEeCCCcEEEEECCCC---eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCCCCC
Q 013545          118 LFVTGSYDHYVKVWDTNCT---RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGHRDG  192 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h~~~  192 (441)
                      +|++++.|++|++||++++   ..+..+. +.+.+.++.+++..  ..++++|+.|+.|++||+.+ +.++..+.+|...
T Consensus       246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~  323 (430)
T 2xyi_A          246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDE  323 (430)
T ss_dssp             EEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC--TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred             EEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC--CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence            9999999999999999876   4555553 45678889998864  35899999999999999998 5678889999999


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      |.++.|+|+++.+|++++.|+.|++||++........+.             .                           
T Consensus       324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~---------------------------  363 (430)
T 2xyi_A          324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED-------------A---------------------------  363 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-------------H---------------------------
T ss_pred             EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc-------------c---------------------------
Confidence            999999999988899999999999999975321100000             0                           


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCC
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~  335 (441)
                                       ..+.........+|...|++++|+|++. +|++++.|++|++|++..
T Consensus       364 -----------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          364 -----------------EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             -----------------HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             -----------------ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                             0000000111346788899999999999 899999999999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=5.8e-25  Score=205.58  Aligned_cols=246  Identities=20%  Similarity=0.317  Sum_probs=186.1

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~  182 (441)
                      .+++.|++ + ++||+| .|++|+|||+.+++++..+...   ..+.++.+++++   .+|++|+.|+.|++||+++++.
T Consensus        28 ~~~l~WS~-~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~---~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSS-G-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG---NYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECT-T-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEECC-C-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC---CEEEEEECCCcEEEeecCCcee
Confidence            35678875 3 466665 5999999999999998887653   358888898864   4899999999999999999999


Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      +..+.+|...+.++.+.+  . ++++++.++.+++|+........                                   
T Consensus       102 ~~~~~~h~~~~~~~~~~~--~-~l~s~~~~~~~~~~~~~~~~~~~-----------------------------------  143 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHV-----------------------------------  143 (318)
T ss_dssp             EEEEECCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEE-----------------------------------
T ss_pred             EEEecCccceEEEeecCC--C-EEEEEecCCceEeeecCCCceeE-----------------------------------
Confidence            999999999998877654  3 68999999999999976432100                                   


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                                                         ....+|...+..+.+++++.+|++++.|++|++||+.+++.....
T Consensus       144 -----------------------------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  188 (318)
T 4ggc_A          144 -----------------------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP  188 (318)
T ss_dssp             -----------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC
T ss_pred             -----------------------------------EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc
Confidence                                               012457788999999999999999999999999999986543222


Q ss_pred             eeeEEeccCcceEEEeeCCCc-EEEEeC---CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee--cCCcEE
Q 013545          343 FETVRLQTSKPIQLATTQDPA-VVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG--NDRQIL  416 (441)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s--~D~~i~  416 (441)
                      .............+.+.++.. .+..++   ...+++||.......... .|...+..+.|+|+++.+++++  .|++|+
T Consensus       189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~  267 (318)
T 4ggc_A          189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLV  267 (318)
T ss_dssp             SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEE
Confidence            222222233444556666544 333322   257999999888776654 4677899999999999988654  799999


Q ss_pred             EeCCCCCCCCCccCC
Q 013545          417 VWCPSRHISDGVDAG  431 (441)
Q Consensus       417 vW~~~~~~~~~~~~~  431 (441)
                      ||++.++.......|
T Consensus       268 iwd~~~~~~~~~l~g  282 (318)
T 4ggc_A          268 IWKYPTMAKVAELKG  282 (318)
T ss_dssp             EEETTTCCEEEEECC
T ss_pred             EEECCCCcEEEEEcC
Confidence            999998876555544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.6e-25  Score=220.79  Aligned_cols=241  Identities=11%  Similarity=0.044  Sum_probs=187.4

Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---EEEEEecC-----------------------------------
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFKMP-----------------------------------  145 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~~~-----------------------------------  145 (441)
                      .++.++.+++ ++++|+++ .++.|++||+.+++   .+..+...                                   
T Consensus         5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3577788776 67766655 57899999999988   55555422                                   


Q ss_pred             --------------------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECC--CCceeeeec--CCCCCeEEEEEecC
Q 013545          146 --------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--SGAISQTLS--GHRDGIMTVEWSTS  201 (441)
Q Consensus       146 --------------------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~--~~~~~~~l~--~h~~~v~~v~fsp~  201 (441)
                                          +.+.++.+++++  ..++++++.|+.|++||+.  +++.+..+.  .|...|.+++|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE--SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTS--SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCC--CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                                137778888764  2345899999999999999  888888876  67789999999999


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      ++ .|++++.||.|++||+..+.....                                                     
T Consensus       161 ~~-~l~~~~~~g~v~~~~~~~~~~~~~-----------------------------------------------------  186 (450)
T 2vdu_B          161 DT-TVIIADKFGDVYSIDINSIPEEKF-----------------------------------------------------  186 (450)
T ss_dssp             SS-EEEEEETTSEEEEEETTSCCCSSC-----------------------------------------------------
T ss_pred             CC-EEEEEeCCCcEEEEecCCcccccc-----------------------------------------------------
Confidence            97 578999999999999875421100                                                     


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccC---CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (441)
                                    ......+|.+.|++|+|+|+   +.+|++|+.|++|++||+.+++....   ....+...+..+++
T Consensus       187 --------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~h~~~v~~~~~  249 (450)
T 2vdu_B          187 --------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK---WLFGHKHFVSSICC  249 (450)
T ss_dssp             --------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE---ECCCCSSCEEEEEE
T ss_pred             --------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee---eecCCCCceEEEEE
Confidence                          00013468889999999999   99999999999999999988764221   01123455667888


Q ss_pred             eCCCcEEEEeCC-CceEEEEccCCceEeeeccc-------------------------ccceEEEEEcCCCCeEEEee-c
Q 013545          359 TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-------------------------YEYVNCCCFSSQDQELYTGG-N  411 (441)
Q Consensus       359 ~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh-------------------------~~~v~~v~fspd~~~l~s~s-~  411 (441)
                      + ++.++++++. ..+++||+.+++.+..+..|                         ...|.+++|+|++++|++++ .
T Consensus       250 s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          250 G-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             C-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             C-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence            8 8888888765 68999999999988887643                         35699999999999999998 8


Q ss_pred             CCcEEEeCC
Q 013545          412 DRQILVWCP  420 (441)
Q Consensus       412 D~~i~vW~~  420 (441)
                      |+.|+||++
T Consensus       329 d~~i~iw~~  337 (450)
T 2vdu_B          329 TKCIIILEM  337 (450)
T ss_dssp             CSEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            999999999

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.9e-25  Score=217.88  Aligned_cols=289  Identities=10%  Similarity=0.054  Sum_probs=205.7

Q ss_pred             CCCceeEEEccCCCCcEEEEee----CCC----cEEEEEC--CCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545           42 HKGSINSLQVDLTEERYLLSGA----SDS----SVAVYDV--QRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s----~Dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  111 (441)
                      +...|+...|++.+.+++++|+    .||    +|+|||+  .++....               .....+|...+..+++
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~  125 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA---------------QNSYKVNKQWLRYAGH  125 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE---------------EEEEEECGGGHHHHHH
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe---------------eeEEEcChhHHHHHHH
Confidence            4467888899877667888887    568    9999999  7654210               0011234444433332


Q ss_pred             eeC-------------CCCEEEEEeCC------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--
Q 013545          112 YPV-------------DTGLFVTGSYD------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--  170 (441)
Q Consensus       112 ~~~-------------~~~~l~sgs~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--  170 (441)
                      .+.             .+..++.++.+      ++|++||+..+.......+.+.+..+.++|++.   .|++++.++  
T Consensus       126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~---~la~~s~~~~~  202 (415)
T 2hqs_A          126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGR  202 (415)
T ss_dssp             HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSS---EEEEEECTTSS
T ss_pred             HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCC---EEEEEEecCCC
Confidence            210             14566666654      799999998655443344567788999998653   677777764  


Q ss_pred             -cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccc
Q 013545          171 -QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKS  247 (441)
Q Consensus       171 -~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (441)
                       .|++||+++++.. .+..|...+.+++|+|+++.++++++.|+.  |++||++++.+..                    
T Consensus       203 ~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~--------------------  261 (415)
T 2hqs_A          203 SALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ--------------------  261 (415)
T ss_dssp             CEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------
T ss_pred             cEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEe--------------------
Confidence             9999999999865 567788899999999999876657777665  8999987643211                    


Q ss_pred             cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC
Q 013545          248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS  326 (441)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~  326 (441)
                                                                          ...|...+.+++|+|||++|+.++. ++
T Consensus       262 ----------------------------------------------------l~~~~~~~~~~~~spdg~~l~~~s~~~g  289 (415)
T 2hqs_A          262 ----------------------------------------------------VTDGRSNNTEPTWFPDSQNLAFTSDQAG  289 (415)
T ss_dssp             ----------------------------------------------------CCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             ----------------------------------------------------CcCCCCcccceEECCCCCEEEEEECCCC
Confidence                                                                1234456889999999999998876 44


Q ss_pred             --cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEc
Q 013545          327 --RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFS  400 (441)
Q Consensus       327 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs  400 (441)
                        +|++||+.+++...     +.........++++|++..++..+.    ..+.+||+.+++. ..+..|. .+.+++|+
T Consensus       290 ~~~i~~~d~~~~~~~~-----l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~s  362 (415)
T 2hqs_A          290 RPQVYKVNINGGAPQR-----ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLA  362 (415)
T ss_dssp             SCEEEEEETTSSCCEE-----CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEEC
T ss_pred             CcEEEEEECCCCCEEE-----EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEc
Confidence              67777988765321     1112234456789999998877653    4799999998877 4566665 89999999


Q ss_pred             CCCCeEEEeecCC---cEEEeCCCCCCCCCc
Q 013545          401 SQDQELYTGGNDR---QILVWCPSRHISDGV  428 (441)
Q Consensus       401 pd~~~l~s~s~D~---~i~vW~~~~~~~~~~  428 (441)
                      |||++|++++.|+   .|.+|++.+.....+
T Consensus       363 pdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l  393 (415)
T 2hqs_A          363 PNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  393 (415)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred             CCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence            9999999988887   799999986654433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=4.5e-25  Score=215.93  Aligned_cols=241  Identities=15%  Similarity=0.164  Sum_probs=189.7

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      .+.++.++| ++.++++++.|++|++||+.+++.+.....      .+.+..+.+++.   ..++++++.|+.|++||++
T Consensus       124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH---NELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG---TEEEEEEGGGTEEEEEETT
T ss_pred             CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC---CEEEEEECCCCEEEEEECC
Confidence            355778887 777888999999999999999988764332      345777777664   4588999999999999999


Q ss_pred             CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      +++.+..+..|...+.+++|+|+++.++++++.|+.|++||+++++....+.                            
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----------------------------  251 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----------------------------  251 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----------------------------
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----------------------------
Confidence            9999999999999999999999998776777789999999998764432210                            


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee--------cCCcEEE
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG--------SDSRIRL  330 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs--------~D~~i~~  330 (441)
                                                                  +...+.+++|+|+|++|++++        .|++|++
T Consensus       252 --------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~  287 (433)
T 3bws_A          252 --------------------------------------------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGI  287 (433)
T ss_dssp             --------------------------------------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEE
T ss_pred             --------------------------------------------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEE
Confidence                                                        112378899999999999888        5889999


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT  408 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s  408 (441)
                      ||+.+++...    .. .....+..+++++++..+++.  ....+++||+.+++....+. |...+.+++|+|||++|++
T Consensus       288 ~d~~~~~~~~----~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  361 (433)
T 3bws_A          288 YSMDKEKLID----TI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYV  361 (433)
T ss_dssp             EETTTTEEEE----EE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred             EECCCCcEEe----ec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEE
Confidence            9998775321    11 112345678889998766554  34689999999998888776 6778999999999999888


Q ss_pred             eec---------------CCcEEEeCCCCCCCCC
Q 013545          409 GGN---------------DRQILVWCPSRHISDG  427 (441)
Q Consensus       409 ~s~---------------D~~i~vW~~~~~~~~~  427 (441)
                      ++.               |+.|++|++.+++...
T Consensus       362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~  395 (433)
T 3bws_A          362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE  395 (433)
T ss_dssp             EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred             EecCCCccccccccccccceEEEEEECCCCcEEE
Confidence            776               5799999998776443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.3e-26  Score=238.31  Aligned_cols=212  Identities=18%  Similarity=0.303  Sum_probs=171.8

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC--CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC--TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      ..+|.+.|.++.|+| ++++|++|+.|++|++||+..  +..+..+. +.+.+.++.+++... ..+|++|+.|+.|++|
T Consensus         5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-GTILASCSYDGKVLIW   82 (753)
T ss_dssp             ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS-CSEEEEEETTSCEEEE
T ss_pred             cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC-CCEEEEEeCCCeEEEE
Confidence            458999999999987 788999999999999999974  44555554 456788999887532 3589999999999999


Q ss_pred             ECCCCc--eeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       176 dl~~~~--~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      |+.+++  ....+.+|...|.+++|+|+  ++ ++++|+.||+|++||++.+.....                       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~-----------------------  138 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP-----------------------  138 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCC-----------------------
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcce-----------------------
Confidence            999987  67788899999999999998  76 579999999999999975421100                       


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-------------CCCE
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-------------DGMY  318 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------------dg~~  318 (441)
                                                                    ....+|...|.+++|+|             ++.+
T Consensus       139 ----------------------------------------------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~  172 (753)
T 3jro_A          139 ----------------------------------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (753)
T ss_dssp             ----------------------------------------------EEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred             ----------------------------------------------eEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence                                                          01235777899999999             5899


Q ss_pred             EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEE
Q 013545          319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC  398 (441)
Q Consensus       319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~  398 (441)
                      |++|+.|++|++||+.++....                                         .....+.+|.++|.+++
T Consensus       173 l~sgs~dg~I~iwd~~~~~~~~-----------------------------------------~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          173 FVTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             EEEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSCEEEEE
T ss_pred             EEEEECCCeEEEEeccCCcccc-----------------------------------------eeeeeecCCCCcEEEEE
Confidence            9999999999999987654211                                         12245678999999999


Q ss_pred             EcCC---CCeEEEeecCCcEEEeCCCCC
Q 013545          399 FSSQ---DQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       399 fspd---~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      |+|+   +++|++|+.|++|++|++.++
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            9999   899999999999999999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=2.9e-24  Score=216.22  Aligned_cols=281  Identities=12%  Similarity=0.072  Sum_probs=208.4

Q ss_pred             ccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEE
Q 013545           51 VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKV  130 (441)
Q Consensus        51 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~i  130 (441)
                      |+| ++.++++++.|++|.+||..+++..          ..  +.    .+|.  +..+.++| ++.+|++++.|++|++
T Consensus       145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~----------~~--i~----~g~~--~~~v~~sp-dg~~l~v~~~d~~V~v  204 (543)
T 1nir_A          145 LDL-PNLFSVTLRDAGQIALVDGDSKKIV----------KV--ID----TGYA--VHISRMSA-SGRYLLVIGRDARIDM  204 (543)
T ss_dssp             CCG-GGEEEEEEGGGTEEEEEETTTCCEE----------EE--EE----CSTT--EEEEEECT-TSCEEEEEETTSEEEE
T ss_pred             cCC-CCEEEEEEcCCCeEEEEECCCceEE----------EE--Ee----cCcc--cceEEECC-CCCEEEEECCCCeEEE
Confidence            776 5678999999999999999876431          00  10    1333  56677776 8999999999999999


Q ss_pred             EEC--CCCeEEEEEecCCeeEEEeecc----CCCCccEEEEEe-CCCcEEEEECCCCceeeeecC----------CCC-C
Q 013545          131 WDT--NCTRVVMNFKMPGKVYRTAMSP----LAASHMLIAAGT-EDVQVRLCDIASGAISQTLSG----------HRD-G  192 (441)
Q Consensus       131 Wd~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~las~s-~d~~I~vwdl~~~~~~~~l~~----------h~~-~  192 (441)
                      ||+  .+++++.++........+++++    ++   .+|++++ .++.|.+||..++++++++..          |.. .
T Consensus       205 ~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg---~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          205 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYED---RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             EETTSSSCEEEEEEECCSEEEEEEECCSTTCTT---TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             EECcCCCCcEEEEEecCCCcceEEeCCCcCCCC---CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence            999  8899888888777788888988    54   3555555 589999999999999888764          333 7


Q ss_pred             eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      +.++.++|+++.++++...+++|.+||+.+.+++...                                           
T Consensus       282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~-------------------------------------------  318 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-------------------------------------------  318 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-------------------------------------------
T ss_pred             eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-------------------------------------------
Confidence            8999999998888889999999999998764322100                                           


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE-eecCCcEEEeeCCCCCceeeeeeeEEe-cc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGRNTLVNFETVRL-QT  350 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~~~~~~~~~~~~~~-~~  350 (441)
                                                 ...+...+.+++|+|+|+++++ +..+++|.+||+.+++... .+..... +.
T Consensus       319 ---------------------------~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~-~i~~g~~ph~  370 (543)
T 1nir_A          319 ---------------------------SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA-LVDVGKTPHP  370 (543)
T ss_dssp             ---------------------------EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-EEECSSSBCC
T ss_pred             ---------------------------EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE-eeccCCCCCC
Confidence                                       0012233567899999997655 4568999999999876321 1111000 11


Q ss_pred             CcceEEEeeCC-CcEEEEeC--CCceEEEEccC-------CceEeeecccccceEEEEEcCCCCeEEEee-------cCC
Q 013545          351 SKPIQLATTQD-PAVVFVPC--MTAVKAFDIWS-------GKTCLTFRGHYEYVNCCCFSSQDQELYTGG-------NDR  413 (441)
Q Consensus       351 ~~~~~~~~~~~-~~~~~~~~--~~~~~~wd~~~-------~~~~~~l~gh~~~v~~v~fspd~~~l~s~s-------~D~  413 (441)
                      .....+ +.++ +..+++..  ..++.+||..+       ++.+.++.+|.+.+..|+|+|||++|++++       .++
T Consensus       371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~  449 (543)
T 1nir_A          371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ  449 (543)
T ss_dssp             TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred             CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCc
Confidence            112222 4566 44444443  36899999988       899999999999999999999999999987       378


Q ss_pred             cEEEeCCCCCCCC
Q 013545          414 QILVWCPSRHISD  426 (441)
Q Consensus       414 ~i~vW~~~~~~~~  426 (441)
                      +|+|||+.+....
T Consensus       450 ~v~v~d~~~~~~~  462 (543)
T 1nir_A          450 SVAVFDLKNLDAK  462 (543)
T ss_dssp             CEEEEETTCTTSC
T ss_pred             eEEEEECCCCCCC
Confidence            9999999988754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=7.3e-24  Score=213.27  Aligned_cols=300  Identities=14%  Similarity=0.147  Sum_probs=219.3

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEEC--CCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC---C
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDV--QRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV---D  115 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~  115 (441)
                      +|.  +.+++|+| ++++|++++.|++|++||+  .+++..            ..+      .+...+..++++|.   +
T Consensus       178 g~~--~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~------------~~i------~~g~~p~~va~sp~~~~d  236 (543)
T 1nir_A          178 GYA--VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKV------------AEI------KIGIEARSVESSKFKGYE  236 (543)
T ss_dssp             STT--EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEE------------EEE------ECCSEEEEEEECCSTTCT
T ss_pred             Ccc--cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEE------------EEE------ecCCCcceEEeCCCcCCC
Confidence            554  88999997 6889999999999999999  544311            011      12234567777651   6


Q ss_pred             CCEEEEEe-CCCcEEEEECCCCeEEEEEecCC------------eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545          116 TGLFVTGS-YDHYVKVWDTNCTRVVMNFKMPG------------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (441)
Q Consensus       116 ~~~l~sgs-~D~~i~iWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~  182 (441)
                      ++++++++ .|++|.+||..+++++..+...+            .+..+.++++.  ..++++...++.|.+||+.+.+.
T Consensus       237 g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~--~~~~vs~~~~g~i~vvd~~~~~~  314 (543)
T 1nir_A          237 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH--PEFIVNVKETGKVLLVNYKDIDN  314 (543)
T ss_dssp             TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEECTTSSS
T ss_pred             CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC--CEEEEEECCCCeEEEEEecCCCc
Confidence            88888887 58999999999999988776532            45666777653  45778888899999999998765


Q ss_pred             ee--eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          183 SQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       183 ~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                      +.  .+ .+...+..+.|+|+++++++++..+++|++||+.++++...++...                           
T Consensus       315 l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~---------------------------  366 (543)
T 1nir_A          315 LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK---------------------------  366 (543)
T ss_dssp             CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS---------------------------
T ss_pred             ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC---------------------------
Confidence            44  34 3566788999999999877777789999999999887665543110                           


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEee-cCCcEEEeeCCCCCc
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAG-SDSRIRLWDVESGRN  338 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs-~D~~i~~wd~~~~~~  338 (441)
                                                              ..|.+....+ ++|+ +..++|+. .|++|.+||+.+...
T Consensus       367 ----------------------------------------~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~  405 (543)
T 1nir_A          367 ----------------------------------------TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH  405 (543)
T ss_dssp             ----------------------------------------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             ----------------------------------------CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence                                                    1233323233 5677 66677775 689999999987211


Q ss_pred             ---eeeeeeeEEeccCcceEEEeeCCCcEEEEeC--------CCceEEEEccCCceE-eee--------cccccceEEEE
Q 013545          339 ---TLVNFETVRLQTSKPIQLATTQDPAVVFVPC--------MTAVKAFDIWSGKTC-LTF--------RGHYEYVNCCC  398 (441)
Q Consensus       339 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~wd~~~~~~~-~~l--------~gh~~~v~~v~  398 (441)
                         .......+..+...+..+.++|++..+++..        ..++.+||+.+++.. ..+        ..|.+.+..++
T Consensus       406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  485 (543)
T 1nir_A          406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE  485 (543)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred             chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence               0112334444445667788999999999876        358999999998876 443        46678899999


Q ss_pred             EcCCCCeEEEe-----ecCCcEEEeCCCCCCCCCccCCc
Q 013545          399 FSSQDQELYTG-----GNDRQILVWCPSRHISDGVDAGP  432 (441)
Q Consensus       399 fspd~~~l~s~-----s~D~~i~vW~~~~~~~~~~~~~~  432 (441)
                      |+|||++|+.+     +.|++|.|||..+.++..++.++
T Consensus       486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence            99999998855     24799999999999887776653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=1.2e-22  Score=197.95  Aligned_cols=265  Identities=15%  Similarity=0.120  Sum_probs=191.4

Q ss_pred             ecCCCCceeEEEccCC-------------CCcEEEEeeCC------CcEEEEECCCCcccCCCCceeccceeEEeecccc
Q 013545           39 VSPHKGSINSLQVDLT-------------EERYLLSGASD------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHE   99 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~-------------~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (441)
                      +.+|...+..+++++.             .+..++.++.+      ++|++||+.....                  ...
T Consensus       113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~------------------~~l  174 (415)
T 2hqs_A          113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ------------------FVV  174 (415)
T ss_dssp             EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC------------------EEE
T ss_pred             EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC------------------EEE
Confidence            5678777777776531             14456666664      7999999864221                  111


Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCC---cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCc--EEE
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDH---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ--VRL  174 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~--I~v  174 (441)
                      .+|...|.++.|+| ++++|++++.|+   +|++||+.+++........+.+..+.|+|++.  .++++++.++.  |++
T Consensus       175 ~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~  251 (415)
T 2hqs_A          175 HRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYV  251 (415)
T ss_dssp             EEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEE
T ss_pred             eCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEE
Confidence            25778899999987 789999999885   99999999998765555667788899998753  34446666554  999


Q ss_pred             EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      ||+++++. ..+..|...+.+++|+|+++++++++..++  .|.+||+.++....                         
T Consensus       252 ~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-------------------------  305 (415)
T 2hqs_A          252 MDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-------------------------  305 (415)
T ss_dssp             EETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-------------------------
T ss_pred             EECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-------------------------
Confidence            99998876 567789999999999999986544443456  56666765432100                         


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---CcEE
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SRIR  329 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~  329 (441)
                                                                     ...|...+.+++|+|||++|++++.+   .+|+
T Consensus       306 -----------------------------------------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          306 -----------------------------------------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  338 (415)
T ss_dssp             -----------------------------------------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             -----------------------------------------------EecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence                                                           01123457789999999999988775   5899


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-C---ceEEEEccCCceEeeecccccceEEEEEcCCCC
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ  404 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~  404 (441)
                      +||+.+++...     +. .......++++|++..++.++. .   .+.+||+. +.....+.+|.+.|.+++|+|-..
T Consensus       339 ~~d~~~~~~~~-----l~-~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          339 KQDLATGGVQV-----LS-STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEETTTCCEEE-----CC-CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEECCCCCEEE-----ec-CCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            99999875321     11 1125567889999998777654 2   58889986 666788999999999999999643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1e-21  Score=184.95  Aligned_cols=286  Identities=12%  Similarity=0.097  Sum_probs=192.1

Q ss_pred             EccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC-CCcE
Q 013545           50 QVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY-DHYV  128 (441)
Q Consensus        50 ~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~-D~~i  128 (441)
                      .|.++.+..+++++.+++|++||..+++...            ..     ..+...+ .+.++| ++++++.++. ++.|
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~------------~~-----~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i   64 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILN------------QI-----TLGYDFV-DTAITS-DCSNVVVTSDFCQTL   64 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEE------------EE-----ECCCCEE-EEEECS-SSCEEEEEESTTCEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceee------------eE-----EccCCcc-eEEEcC-CCCEEEEEeCCCCeE
Confidence            3554455668999999999999998764210            00     1123344 677776 6776655554 8999


Q ss_pred             EEEECCCCeE-EEEEecCCeeEE-EeeccCCCCccEEEEEeCC-C--cEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545          129 KVWDTNCTRV-VMNFKMPGKVYR-TAMSPLAASHMLIAAGTED-V--QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       129 ~iWd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~las~s~d-~--~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~  203 (441)
                      .+||+.+++. ...+........ +.+++++   ..++++..+ +  .|.+||+++++.+..+..+ ..+.+++|+|+++
T Consensus        65 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~  140 (331)
T 3u4y_A           65 VQIETQLEPPKVVAIQEGQSSMADVDITPDD---QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGN  140 (331)
T ss_dssp             EEEECSSSSCEEEEEEECSSCCCCEEECTTS---SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSS
T ss_pred             EEEECCCCceeEEecccCCCCccceEECCCC---CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCC
Confidence            9999999887 666655444444 7787754   345555444 3  8999999999988777654 4568999999998


Q ss_pred             cEEEEeecCCc-EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          204 WILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       204 ~~l~s~s~Dg~-I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      +++++...++. |.+|++...+.+.... .                                                  
T Consensus       141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~--------------------------------------------------  169 (331)
T 3u4y_A          141 GLILIDRSSANTVRRFKIDADGVLFDTG-Q--------------------------------------------------  169 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCCEEEEE-E--------------------------------------------------
T ss_pred             EEEEEecCCCceEEEEEECCCCcEeecC-C--------------------------------------------------
Confidence            77777777788 9999987532211100 0                                                  


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD  361 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (441)
                          .            .......+..++|+|||+++ +++..+++|++||+.+++... ...... ....+..++++++
T Consensus       170 ----~------------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~-~~~~~~~~~~spd  231 (331)
T 3u4y_A          170 ----E------------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVG-TNNLPGTIVVSRD  231 (331)
T ss_dssp             ----E------------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEE-CSSCCCCEEECTT
T ss_pred             ----c------------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeecc-CCCCCceEEECCC
Confidence                0            00011236789999999965 555678999999999876411 111222 2345667899999


Q ss_pred             CcEEEEeCC--CceEEEEccCCce--Eeeeccc----ccc---eEEEEEcCCCCeEEEe-ecCCcEEEeCCCCCCCCC
Q 013545          362 PAVVFVPCM--TAVKAFDIWSGKT--CLTFRGH----YEY---VNCCCFSSQDQELYTG-GNDRQILVWCPSRHISDG  427 (441)
Q Consensus       362 ~~~~~~~~~--~~~~~wd~~~~~~--~~~l~gh----~~~---v~~v~fspd~~~l~s~-s~D~~i~vW~~~~~~~~~  427 (441)
                      +..+++.+.  ..+.+||+.+++.  +..+..+    ..+   ...++|+|||++|+.+ ..+++|++|+++......
T Consensus       232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  309 (331)
T 3u4y_A          232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGY  309 (331)
T ss_dssp             SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence            998777654  5789999998877  3333322    222   3568999999998655 456799999998766443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=1.7e-21  Score=183.88  Aligned_cols=280  Identities=10%  Similarity=0.150  Sum_probs=182.6

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC-CcEEEEECC-
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD-HYVKVWDTN-  134 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D-~~i~iWd~~-  134 (441)
                      .++++++.|+.|++||+......         ..+..      ..|...+.++.++| ++++|++++.+ +.|++|++. 
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~---------~~~~~------~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~   69 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGAL---------TLTQV------VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAP   69 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE---------EEEEE------EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEeCCCCCeEEEEEECCCCcE---------EEeee------EecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecC
Confidence            34566688999999998531100         00100      13455677788887 78888888876 999999987 


Q ss_pred             -CCe--EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC---CCceeeeecCCCCCeEEEEEecCCCcEEEE
Q 013545          135 -CTR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA---SGAISQTLSGHRDGIMTVEWSTSSEWILVT  208 (441)
Q Consensus       135 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~---~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s  208 (441)
                       +++  .+..+...+.+..+.+++++.  .+++++..++.|.+||+.   +.+....+..+ ..+.+++|+|+++.++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~  146 (343)
T 1ri6_A           70 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVP  146 (343)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEE
T ss_pred             CCCceeeccccccCCCCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEe
Confidence             555  344555555667778887642  344555568899999994   33445555544 458899999999876555


Q ss_pred             eecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccc
Q 013545          209 GGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ  287 (441)
Q Consensus       209 ~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (441)
                      +..++.|++||+.+ ++.......                                                        
T Consensus       147 ~~~~~~v~~~d~~~~~~~~~~~~~--------------------------------------------------------  170 (343)
T 1ri6_A          147 ALKQDRICLFTVSDDGHLVAQDPA--------------------------------------------------------  170 (343)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEE--------------------------------------------------------
T ss_pred             cCCCCEEEEEEecCCCceeeeccc--------------------------------------------------------
Confidence            54899999999875 321110000                                                        


Q ss_pred             ccCCCcccccccceeeccCeEEEEEccCCCEEEE-eecCCcEEEeeCCC--CCceeeeeeeEE-ec-----cCcceEEEe
Q 013545          288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVES--GRNTLVNFETVR-LQ-----TSKPIQLAT  358 (441)
Q Consensus       288 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~--~~~~~~~~~~~~-~~-----~~~~~~~~~  358 (441)
                      ..          .......+..++|+|++++++. +..+++|++||+..  ++...  ..... ..     ...+..+++
T Consensus       171 ~~----------~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          171 EV----------TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC--VQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             EE----------ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE--EEEEECSCTTCCSCCCEEEEEE
T ss_pred             cc----------ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--EeeccccCccccccCCccceEE
Confidence            00          0001124678999999997654 45889999999954  33211  11111 11     112335889


Q ss_pred             eCCCcEEEEeC--CCceEEEEcc--CC--ceEeeecccccceEEEEEcCCCCeEEEee-cCCcEEEe--CCCCCC
Q 013545          359 TQDPAVVFVPC--MTAVKAFDIW--SG--KTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVW--CPSRHI  424 (441)
Q Consensus       359 ~~~~~~~~~~~--~~~~~~wd~~--~~--~~~~~l~gh~~~v~~v~fspd~~~l~s~s-~D~~i~vW--~~~~~~  424 (441)
                      ++++..+++.+  ...+.+|++.  ++  +.+..+..+.. +.+++|+|||++|++++ .|+.|++|  +..++.
T Consensus       239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            99998777554  3689999997  33  34445555555 89999999999888776 68999999  544554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=3e-21  Score=181.61  Aligned_cols=294  Identities=11%  Similarity=0.079  Sum_probs=185.3

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc-ceeEEEEeeCCCCE-EEEEeCCCcEEEEECC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWYPVDTGL-FVTGSYDHYVKVWDTN  134 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~-l~sgs~D~~i~iWd~~  134 (441)
                      ++|++++.|++|++||+.+++...          .+.      .++.. .+..+.++| ++++ +++++.++.|.+||+.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~----------~~~------~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDK----------VIT------IADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEE----------EEE------CTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEE----------EEE------cCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECC
Confidence            479999999999999997654210          010      12211 255677776 5655 5677778999999999


Q ss_pred             CCeEEEEEecCC------eeEEEeeccCCCCccEEEEEe------------CCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          135 CTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGT------------EDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       135 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~las~s------------~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      +++.+..+....      .+..+.+++++.   .++++.            .++.|.+||+++++.+..+.. ...+.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           65 TGETLGRIDLSTPEERVKSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML  140 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred             CCCeEeeEEcCCcccccccccceEECCCCC---EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence            999887776543      455667777542   455554            578999999999988777764 4457889


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      +|+|+++++++ +  ++.|.+||+.+++....+......                                 ....++++
T Consensus       141 ~~s~dg~~l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~---------------------------------~~~~~s~d  184 (337)
T 1pby_B          141 AWARDGSKLYG-L--GRDLHVMDPEAGTLVEDKPIQSWE---------------------------------AETYAQPD  184 (337)
T ss_dssp             EECTTSSCEEE-E--SSSEEEEETTTTEEEEEECSTTTT---------------------------------TTTBCCCB
T ss_pred             EECCCCCEEEE-e--CCeEEEEECCCCcEeeeeeccccC---------------------------------CCceeCCC
Confidence            99999987544 4  689999999887655443211000                                 00001111


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                      ++........              ......+.......++..... .....|.+||+.+++...   .........+..+
T Consensus       185 g~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~  246 (337)
T 1pby_B          185 VLAVWNQHES--------------SGVMATPFYTARKDIDPADPT-AYRTGLLTMDLETGEMAM---REVRIMDVFYFST  246 (337)
T ss_dssp             CCCCCCCCTT--------------TTEEEEEEEEEBTTSCTTSGG-GEEEEEEEEETTTCCEEE---EEEEECSSCEEEE
T ss_pred             ccEEeeeccC--------------CCceeeeeecccccccccccc-ccccceEEEeCCCCCceE---eecCCCCCceeeE
Confidence            1100000000              000000001111111000000 011168999999876431   1112223455678


Q ss_pred             EeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545          357 ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~  427 (441)
                      ++++++..++++ ...+.+||+.+++....+..+ ..+.+++|+|||++|++++.|+.|++|++.+++...
T Consensus       247 ~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          247 AVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             EECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence            899999988877 678999999999888877644 457899999999999998999999999998877443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=2.7e-21  Score=202.34  Aligned_cols=325  Identities=12%  Similarity=0.084  Sum_probs=192.1

Q ss_pred             CCceeEEEccCCCCcEEEEeeC-CC-----cEEEEECCCCcccCCCCceeccce-----eEEeeccc-----ccCcccce
Q 013545           43 KGSINSLQVDLTEERYLLSGAS-DS-----SVAVYDVQRATDYEGGGHIAKHRS-----VFVVDKQH-----EHGHKYAI  106 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~-Dg-----~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----~~~h~~~V  106 (441)
                      ...|.+++|+| +|++|++++. |+     +|++||+.+++....   +..+..     .+......     .......|
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL---VDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE---ECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEc---cchhhcccccccccchhhhhhhhhhhccccCc
Confidence            45799999997 6889999998 88     899999987653110   000000     00000000     00001346


Q ss_pred             eEEEEeeCCCCEEEEEeCCCcEEEEECCCC---eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee
Q 013545          107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (441)
Q Consensus       107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~  183 (441)
                      .++.|+| |+++|++++. ++|++||+.++   .........+.+..+.++|++.   .|+.++ ++.|++||+.+++..
T Consensus       112 ~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~---~la~~~-~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          112 VDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG---FVSFIR-GRNLWVIDLASGRQM  185 (741)
T ss_dssp             CCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS---EEEEEE-TTEEEEEETTTTEEE
T ss_pred             ceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC---EEEEEe-CCcEEEEecCCCCEE
Confidence            7788887 8999999887 89999999887   5433333445678889998753   566665 568999999998876


Q ss_pred             eeecCCCCC----------------eEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545          184 QTLSGHRDG----------------IMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (441)
Q Consensus       184 ~~l~~h~~~----------------v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (441)
                      +....+...                +.++.|+||++++ ++++.| +.+..|+...      ......       .....
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l-~~~~~d~~~~~~~~~~~------~~p~~~-------~~~~~  251 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI-AYARIDESPVPVQKRYE------VYADRT-------DVIEQ  251 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE-EEEEEECTTSCEEEEEE------ECSSCE-------EEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEE-EEEEEcCCCCceEecCC------CCCCcc-------cceEe
Confidence            655544432                4789999999975 555544 3344443100      000000       00000


Q ss_pred             ccccCccCCcCCCCCCcccCCCCCccccCcccccC-C-CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec
Q 013545          247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA-K-GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS  324 (441)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  324 (441)
                      ...                ..+..........+.. . +... .+        .....|...+..++| |||++|+.++.
T Consensus       252 ~~~----------------~~g~~~~~~~l~~~d~~~~~~~~-~~--------~~~~~~~~~~~~~~~-pDg~~l~~~~~  305 (741)
T 2ecf_A          252 RYP----------------AAGDANVQVKLGVISPAEQAQTQ-WI--------DLGKEQDIYLARVNW-RDPQHLSFQRQ  305 (741)
T ss_dssp             ECC----------------BTTSCCCEEEEEEECSSTTCCCE-EE--------CCCSCSSEEEEEEEE-EETTEEEEEEE
T ss_pred             ecC----------------CCCCCCCeeEEEEEECCCCCceE-Ee--------cCCCCcceEEEEEEe-CCCCEEEEEEe
Confidence            000                0000000000000000 0 0000 00        000135567899999 99999987654


Q ss_pred             -----CCcEEEeeCCCCCceeeeeeeEEeccC----cceEEEeeCCCcEEEEeCC-CceEEEEcc-CCceEeeecccccc
Q 013545          325 -----DSRIRLWDVESGRNTLVNFETVRLQTS----KPIQLATTQDPAVVFVPCM-TAVKAFDIW-SGKTCLTFRGHYEY  393 (441)
Q Consensus       325 -----D~~i~~wd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~wd~~-~~~~~~~l~gh~~~  393 (441)
                           +.+|++||+.+++.... +   .....    ....+++++|+.++++... +..++|.+. +++ ...+..|...
T Consensus       306 ~~~~~~~~i~~~d~~~g~~~~~-~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~  380 (741)
T 2ecf_A          306 SRDQKKLDLVEVTLASNQQRVL-A---HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS  380 (741)
T ss_dssp             ETTSSEEEEEEEETTTCCEEEE-E---EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC
T ss_pred             cccCCeEEEEEEECCCCceEEE-E---EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE
Confidence                 56899999998764221 1   11111    1235678999997766654 457788764 455 7888889888


Q ss_pred             eEEE-EEcCCCCeEE-EeecCC--cEEEeCCCC
Q 013545          394 VNCC-CFSSQDQELY-TGGNDR--QILVWCPSR  422 (441)
Q Consensus       394 v~~v-~fspd~~~l~-s~s~D~--~i~vW~~~~  422 (441)
                      |..+ +|||||++|+ +++.|+  +++||+++.
T Consensus       381 v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          381 VDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            9887 5999999876 555555  899998763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.8e-19  Score=170.82  Aligned_cols=274  Identities=12%  Similarity=0.075  Sum_probs=194.1

Q ss_pred             CCCceeEEEccCCCCcEEEEeeC-------CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           42 HKGSINSLQVDLTEERYLLSGAS-------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ....+..++|+| ++++|+.++.       ++.|.+||..+++...          .+.        +...+..+.+++ 
T Consensus        39 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~----------~~~--------~~~~~~~~~~s~-   98 (353)
T 3vgz_A           39 VGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ----------AIH--------NDLKPFGATINN-   98 (353)
T ss_dssp             EESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEE----------EEE--------ESSCCCSEEEET-
T ss_pred             hccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE----------EEe--------cCCCcceEEECC-
Confidence            446788999997 4666666653       6789999998664210          010        111244566766 


Q ss_pred             CCC-EEEEEeCCCcEEEEECCCCeEEEEEecCC----------eeEEEeeccCCCCccEEEEE-eCCCcEEEEECCCCce
Q 013545          115 DTG-LFVTGSYDHYVKVWDTNCTRVVMNFKMPG----------KVYRTAMSPLAASHMLIAAG-TEDVQVRLCDIASGAI  182 (441)
Q Consensus       115 ~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~las~-s~d~~I~vwdl~~~~~  182 (441)
                      +++ +++++..++.|.+||+.+++.+..+....          ....+.+++++.  .+++++ ..++.|.+||+++++.
T Consensus        99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A           99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIKL  176 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTEE
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCce
Confidence            666 55566678999999999999888777643          246677887643  344444 3578899999999999


Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      +..+..+...+.+++|+|+++. ++.++.++.|.+||+.+++....+...                              
T Consensus       177 ~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~~~~~~~~~~~------------------------------  225 (353)
T 3vgz_A          177 KTAIQNTGKMSTGLALDSEGKR-LYTTNADGELITIDTADNKILSRKKLL------------------------------  225 (353)
T ss_dssp             EEEECCCCTTCCCCEEETTTTE-EEEECTTSEEEEEETTTTEEEEEEECC------------------------------
T ss_pred             EEEecCCCCccceEEECCCCCE-EEEEcCCCeEEEEECCCCeEEEEEEcC------------------------------
Confidence            8888766677889999999986 456677999999999876544332110                              


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~  341 (441)
                                                           ..++...+.+++|+|+|++++.++ .++.|.+||+.+++... 
T Consensus       226 -------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-  267 (353)
T 3vgz_A          226 -------------------------------------DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-  267 (353)
T ss_dssp             -------------------------------------CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-
T ss_pred             -------------------------------------CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-
Confidence                                                 001233477899999999766655 45999999998876321 


Q ss_pred             eeeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545          342 NFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                         ...  ...+..+++++++..+++..  ...+.+||..+++.+..+..+. .+.+++|+|||++|+.+..+
T Consensus       268 ---~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          268 ---KVA--APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ---EEE--CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred             ---EEE--cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence               112  23345688899998766654  3689999999999888877554 67999999999977765544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=6.5e-21  Score=175.41  Aligned_cols=255  Identities=13%  Similarity=0.116  Sum_probs=175.3

Q ss_pred             EEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-CeE
Q 013545           60 LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRV  138 (441)
Q Consensus        60 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-~~~  138 (441)
                      .+++.|++|++||+.+++..                  ....|...|.++.|+| ++.+|++++ ++.|++||+.+ ++.
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~------------------~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMR------------------VVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSP   75 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEE------------------EEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred             CCCCcceeEEEEeCCCCcee------------------eeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCc
Confidence            35678999999999765320                  0124677899999987 788999887 78999999998 776


Q ss_pred             EEEEecC--CeeEEEeeccCCCCccEEEEEe--CCCc--EEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecC
Q 013545          139 VMNFKMP--GKVYRTAMSPLAASHMLIAAGT--EDVQ--VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD  212 (441)
Q Consensus       139 ~~~~~~~--~~~~~~~~~~~~~~~~~las~s--~d~~--I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D  212 (441)
                      .......  ..+..+.+++++   ..|++++  .++.  |.++++.+++ ...+..+. .+.+++|+|+++.++++++.|
T Consensus        76 ~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~  150 (297)
T 2ojh_A           76 EKVDTGFATICNNDHGISPDG---ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRD  150 (297)
T ss_dssp             EECCCTTCCCBCSCCEECTTS---SEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEET
T ss_pred             eEeccccccccccceEECCCC---CEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCC
Confidence            5544332  445667788764   3666666  3344  4455555555 34444443 488999999999776688899


Q ss_pred             CcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545          213 GAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP  291 (441)
Q Consensus       213 g~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (441)
                      +.+++|+++... ...                                                                
T Consensus       151 ~~~~l~~~~~~~~~~~----------------------------------------------------------------  166 (297)
T 2ojh_A          151 QVFDIYSMDIDSGVET----------------------------------------------------------------  166 (297)
T ss_dssp             TEEEEEEEETTTCCEE----------------------------------------------------------------
T ss_pred             CceEEEEEECCCCcce----------------------------------------------------------------
Confidence            999999975211 000                                                                


Q ss_pred             CcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC
Q 013545          292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM  370 (441)
Q Consensus       292 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (441)
                             ....|...+.+++|+|+|++|+.++ .|+.+++|++........   .+.........+.+++++..++..+.
T Consensus       167 -------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          167 -------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE---RITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             -------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE---ECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             -------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE---EEecCCcccCCeEECCCCCEEEEEEc
Confidence                   0112345688999999999887666 599999998863221111   11111223445788999998776543


Q ss_pred             ------------CceEEEEccCCce--EeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          371 ------------TAVKAFDIWSGKT--CLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       371 ------------~~~~~wd~~~~~~--~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                                  ..+.+||+.+++.  +..+.+|...+.+++|+||+++|++++.|.
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                        3589999988765  445568999999999999999999887764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=7.8e-21  Score=198.25  Aligned_cols=316  Identities=11%  Similarity=0.077  Sum_probs=186.2

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc---ceeEEEEeeCCCCEEE
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWYPVDTGLFV  120 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~l~  120 (441)
                      ..+.+++|+| +++++++ +.||+|++||+.+++..            ..     ..+|..   .|.++.|+| |+++|+
T Consensus        17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~------------~~-----~~~~~~~~~~v~~~~~Sp-Dg~~l~   76 (723)
T 1xfd_A           17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTST------------VL-----IEGKKIESLRAIRYEISP-DREYAL   76 (723)
T ss_dssp             CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCE------------EE-----ECTTTTTTTTCSEEEECT-TSSEEE
T ss_pred             ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEE------------EE-----eccccccccccceEEECC-CCCEEE
Confidence            4577899997 5677766 78999999999876431            01     113332   488888887 899999


Q ss_pred             EEeCC---------CcEEEEECCCCeEEEEEec-CC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545          121 TGSYD---------HYVKVWDTNCTRVVMNFKM-PG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       121 sgs~D---------~~i~iWd~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      +++.|         +.|.+||+.+++. ..+.. .+   .+..+.++|++.   .||.++. +.|++||+.+++..+...
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~---~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ---QLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT---CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC---EEEEEEC-CeEEEEECCCCceEEEec
Confidence            99875         6788999998876 22322 22   255677888653   5666654 789999999998776665


Q ss_pred             CCCCCe------------------EEEEEecCCCcEEEEee-cCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545          188 GHRDGI------------------MTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL  248 (441)
Q Consensus       188 ~h~~~v------------------~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (441)
                      .+...+                  .+++|+|+++.+ ++++ .++.+++|++.....     ..       .+...... 
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l-a~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~-  217 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL-AYAAINDSRVPIMELPTYTG-----SI-------YPTVKPYH-  217 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE-EEEEEECTTSCEEEECCCSS-----SS-------SCCCEEEE-
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEECCCCCEE-EEEEECCCccceEEeeccCC-----cC-------CCcceecc-
Confidence            544433                  789999999865 4554 446788888642110     00       00000000 


Q ss_pred             ccCccCCcCCCCCCcccCCCCC--ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec--
Q 013545          249 SAGQNSSVKPRAPQKRSANGNG--VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS--  324 (441)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--  324 (441)
                                     +...|..  ......+.+. .+.....+..     ......|...+.+++|||||++|++.+.  
T Consensus       218 ---------------~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~-----~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  276 (723)
T 1xfd_A          218 ---------------YPKAGSENPSISLHVIGLN-GPTHDLEMMP-----PDDPRMREYYITMVKWATSTKVAVTWLNRA  276 (723)
T ss_dssp             ---------------CCBTTSCCCEEEEEEEESS-SSCCCEECCC-----CCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred             ---------------CCCCCCCCCeeEEEEEECC-CCceeEEeeC-----CccCCCccceeEEEEEeCCCeEEEEEEcCC
Confidence                           0000000  0000000000 0000000000     0001123456899999999998877653  


Q ss_pred             --CCcEEEeeCCCCCceeeeeeeEEeccCc----ceEEEeeCCCcEEEEe-C--CC------ceEEEEccCCce---Eee
Q 013545          325 --DSRIRLWDVESGRNTLVNFETVRLQTSK----PIQLATTQDPAVVFVP-C--MT------AVKAFDIWSGKT---CLT  386 (441)
Q Consensus       325 --D~~i~~wd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~--~~------~~~~wd~~~~~~---~~~  386 (441)
                        +..|++||+.+++.... +.  ......    ...++++||+..++.. .  ..      .+.+||+.++..   ...
T Consensus       277 ~~~~~i~~~d~~~g~~~~~-~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  353 (723)
T 1xfd_A          277 QNVSILTLCDATTGVCTKK-HE--DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS  353 (723)
T ss_dssp             SCEEEEEEEETTTCCEEEE-EE--EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred             CCeEEEEEEeCCCCcceEE-EE--eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE
Confidence              35799999998763221 11  111111    1256889999866543 2  23      355566323333   556


Q ss_pred             ecccccceEE-EEEcCCCCeEEEeecC---CcEEEeCCCC
Q 013545          387 FRGHYEYVNC-CCFSSQDQELYTGGND---RQILVWCPSR  422 (441)
Q Consensus       387 l~gh~~~v~~-v~fspd~~~l~s~s~D---~~i~vW~~~~  422 (441)
                      +..+...+.. ++|||||++|+..+.+   +.++||+++.
T Consensus       354 l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          354 ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             eecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence            6644444554 7999999999865554   7899998764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=8.1e-20  Score=191.14  Aligned_cols=281  Identities=11%  Similarity=0.058  Sum_probs=190.7

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCC---cccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRA---TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      .|.+++||| ++++|++++. ++|++||+.++   ...                  ....|...+..+.|+| |+++|+.
T Consensus       110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------~l~~~~~~~~~~~~SP-DG~~la~  168 (741)
T 2ecf_A          110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVR------------------QLTHGEGFATDAKLSP-KGGFVSF  168 (741)
T ss_dssp             ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCC------------------BCCCSSSCEEEEEECT-TSSEEEE
T ss_pred             CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEE------------------EcccCCcccccccCCC-CCCEEEE
Confidence            388999997 5788998887 99999999866   211                  1224566788888887 8999998


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCe-----------------eEEEeeccCCCCccEEEEEeCCC--------------
Q 013545          122 GSYDHYVKVWDTNCTRVVMNFKMPGK-----------------VYRTAMSPLAASHMLIAAGTEDV--------------  170 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~las~s~d~--------------  170 (441)
                      ++. +.|.+||+.+++..........                 +..+.|+|++.   .|++++.|+              
T Consensus       169 ~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~---~l~~~~~d~~~~~~~~~~~~~p~  244 (741)
T 2ecf_A          169 IRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS---AIAYARIDESPVPVQKRYEVYAD  244 (741)
T ss_dssp             EET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS---CEEEEEEECTTSCEEEEEEECSS
T ss_pred             EeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCC---EEEEEEEcCCCCceEecCCCCCC
Confidence            875 5999999998876543322211                 24567888653   466655544              


Q ss_pred             -------------------cEEEEECCC-Cceeeeec--CCCCCeEEEEEecCCCcEEEEee----cCCcEEEEEcCCCc
Q 013545          171 -------------------QVRLCDIAS-GAISQTLS--GHRDGIMTVEWSTSSEWILVTGG----CDGAIRFWDIRRAG  224 (441)
Q Consensus       171 -------------------~I~vwdl~~-~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s----~Dg~I~iWD~~~~~  224 (441)
                                         .|.+||+++ ++......  +|...+..++| |+++.+++++.    .+..|++||+.+++
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred             cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence                               789999998 87654433  47888999999 99987544433    35689999998765


Q ss_pred             eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec
Q 013545          225 CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY  304 (441)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  304 (441)
                      +...+.....                                                                   .+.
T Consensus       324 ~~~~~~~~~~-------------------------------------------------------------------~~~  336 (741)
T 2ecf_A          324 QRVLAHETSP-------------------------------------------------------------------TWV  336 (741)
T ss_dssp             EEEEEEEECS-------------------------------------------------------------------SCC
T ss_pred             eEEEEEcCCC-------------------------------------------------------------------CcC
Confidence            5443311000                                                                   000


Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE-EeeCCCcEEEE-eCCC---ceEEEEcc
Q 013545          305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL-ATTQDPAVVFV-PCMT---AVKAFDIW  379 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~---~~~~wd~~  379 (441)
                      ..+.+++|+|||+++++++.|++++||.+..... ..   .+.........+ .+++++..++. +...   .+++|++.
T Consensus       337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~---~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA---ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE---ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee---eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            1244678999999999999999888887753211 11   111112222334 58999986654 4333   78999986


Q ss_pred             C-CceEeeecccccceEEEEEcCCCCeEEEeecC----CcEEEeCCCCC
Q 013545          380 S-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRH  423 (441)
Q Consensus       380 ~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D----~~i~vW~~~~~  423 (441)
                      . ++....+.+ ...+.+++|||||++|+....+    ..+.+|+..+.
T Consensus       413 ~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          413 LQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             TTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             cCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            4 666677776 6678999999999998865433    45888887554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=5.5e-20  Score=191.43  Aligned_cols=295  Identities=11%  Similarity=0.067  Sum_probs=183.0

Q ss_pred             eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcc--cCCCCceecccee---EEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATD--YEGGGHIAKHRSV---FVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      ++.+.|.   ++.+++++.|+ | +||+.+++.  ..    +..+...   +..+......+...|.++.++| | ..++
T Consensus        28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~----l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp-d-~~~~   96 (706)
T 2z3z_A           28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTT----RFSAADLNALMPEGCKFQTTDAFPSFRTLDAG-R-GLVV   96 (706)
T ss_dssp             CTTCEEE---TTEEEEEETTE-E-EEEC-------CE----EEEHHHHHTTC-----------CCCEEEEETT-T-TEEE
T ss_pred             CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEE----eechhHhhhhccchhccccccccCceeEEECC-C-CeEE
Confidence            6667776   34577778888 8 999987753  11    0000000   0000000112225688899987 5 4555


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-----CceeeeecCCCCC---
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-----GAISQTLSGHRDG---  192 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-----~~~~~~l~~h~~~---  192 (441)
                      .+ .|++|++||+.+++........+.+..+.++|++.   .|+.+ .++.|++||+.+     ++..+....+...   
T Consensus        97 ~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~---~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           97 LF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGD---RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             EE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSS---EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             EE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCC---EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            44 45999999999988766555556667778888653   56664 579999999998     8766555544443   


Q ss_pred             -----------eEEEEEecCCCcEEEEeec-CC--------------------------------cEEEEEcCCCceeeE
Q 013545          193 -----------IMTVEWSTSSEWILVTGGC-DG--------------------------------AIRFWDIRRAGCFRV  228 (441)
Q Consensus       193 -----------v~~v~fsp~~~~~l~s~s~-Dg--------------------------------~I~iWD~~~~~~~~~  228 (441)
                                 +.++.|+|+++++ ++++. +.                                .|++||+.++.... 
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~l-a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~-  249 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCL-AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY-  249 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEE-EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE-
T ss_pred             ccchhhhhcCCCceEEECCCCCEE-EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe-
Confidence                       4899999999864 55552 22                                23333332221100 


Q ss_pred             eccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeE
Q 013545          229 LDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVT  308 (441)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  308 (441)
                                                                                  +        .....|...+.
T Consensus       250 ------------------------------------------------------------~--------~~~~~~~~~~~  261 (706)
T 2z3z_A          250 ------------------------------------------------------------L--------QTGEPKEKFLT  261 (706)
T ss_dssp             ------------------------------------------------------------C--------CCCSCTTCEEE
T ss_pred             ------------------------------------------------------------e--------ccCCCCceeEe
Confidence                                                                        0        00013445689


Q ss_pred             EEEEccCCCEEEEeecCC-----cEEEeeCCCCCceeeeeeeEEeccC---cceEEEeeC--CCcEEEEeCC-CceEEEE
Q 013545          309 GLKVTEDGMYLLSAGSDS-----RIRLWDVESGRNTLVNFETVRLQTS---KPIQLATTQ--DPAVVFVPCM-TAVKAFD  377 (441)
Q Consensus       309 ~l~~s~dg~~l~sgs~D~-----~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~-~~~~~wd  377 (441)
                      +++|+|||++|++++.|+     +|++||+.+++........ . ...   ....+++++  ++.+++++.. +.+++|.
T Consensus       262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~-~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-T-DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-E-CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred             eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-c-CCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence            999999999999988876     9999999987322111110 1 111   123467888  9987776654 5688998


Q ss_pred             cc-CCceEeeecccccceEE-EEEcCCCCeEEEeec-CC----cEEEeCCCCCCCCCc
Q 013545          378 IW-SGKTCLTFRGHYEYVNC-CCFSSQDQELYTGGN-DR----QILVWCPSRHISDGV  428 (441)
Q Consensus       378 ~~-~~~~~~~l~gh~~~v~~-v~fspd~~~l~s~s~-D~----~i~vW~~~~~~~~~~  428 (441)
                      +. +++.+..+.+|...+.+ ++|+|||++|+.++. ++    .|..|+..++....+
T Consensus       340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l  397 (706)
T 2z3z_A          340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL  397 (706)
T ss_dssp             EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred             EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec
Confidence            86 67888889989888887 899999998875544 44    566667766654433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=7.6e-20  Score=198.47  Aligned_cols=280  Identities=10%  Similarity=0.041  Sum_probs=200.3

Q ss_pred             CCCceeEEEcc-CCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc-ceeEEEEeeCCCCEE
Q 013545           42 HKGSINSLQVD-LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWYPVDTGLF  119 (441)
Q Consensus        42 H~~~V~~l~~s-~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~l  119 (441)
                      |.+.|.+++|+ | ++++|++++ ++.|.+|++..+...                  ....|.. .+..+.|+  |+..|
T Consensus       294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~------------------~~~~~~~~~~~~~~~s--dg~~l  351 (1045)
T 1k32_A          294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL------------------KVPEPLRIRYVRRGGD--TKVAF  351 (1045)
T ss_dssp             ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE------------------ECSCCSCEEEEEECSS--SEEEE
T ss_pred             cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE------------------EccCCCcceEEeeeEc--CCCeE
Confidence            44579999999 7 577788887 899999998754311                  0124555 67777777  78899


Q ss_pred             EEEeCCCcEE-EEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          120 VTGSYDHYVK-VWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       120 ~sgs~D~~i~-iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      ++++.+..+. +||+.++...........+..+.++|++   ..|++++.++.|++||+++++....+.+|...+.+++|
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG---~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~  428 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI  428 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred             EEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC---CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence            9999988888 9999877654322233557788888864   47888889999999999999988888899999999999


Q ss_pred             ecCCCcEEEEeecC----------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          199 STSSEWILVTGGCD----------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       199 sp~~~~~l~s~s~D----------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      +|+++++ ++++.+          +.|++||+.+++ ...+                                       
T Consensus       429 SpDG~~l-a~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l---------------------------------------  467 (1045)
T 1k32_A          429 SDNSRFI-AYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA---------------------------------------  467 (1045)
T ss_dssp             CTTSCEE-EEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC---------------------------------------
T ss_pred             CCCCCeE-EEEecCccccccCCCCCeEEEEECCCCc-EEEe---------------------------------------
Confidence            9999865 555554          489999987643 1111                                       


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee---ee--
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV---NF--  343 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~---~~--  343 (441)
                                                      ..|...+..++|+|||++|+.++.++..++|+.........   ..  
T Consensus       468 --------------------------------~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  515 (1045)
T 1k32_A          468 --------------------------------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV  515 (1045)
T ss_dssp             --------------------------------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred             --------------------------------eCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEE
Confidence                                            12334467789999999999999988888887543211000   00  


Q ss_pred             ----------------------------------eeEEeccCcceEEEeeCCCcEEEEe------------C--CCceEE
Q 013545          344 ----------------------------------ETVRLQTSKPIQLATTQDPAVVFVP------------C--MTAVKA  375 (441)
Q Consensus       344 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~  375 (441)
                                                        ..+.........+++++++..+++.            .  ...+..
T Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~  595 (1045)
T 1k32_A          516 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK  595 (1045)
T ss_dssp             EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred             EEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence                                              0000011223456778888766651            1  236778


Q ss_pred             EEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          376 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       376 wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      ||+.+++.. .+.   ..+..++|||||++|++++.| .|++|++.+++
T Consensus       596 ~d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          596 YDVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             EECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence            888888753 333   568999999999999999877 89999998876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=5.6e-20  Score=191.35  Aligned_cols=282  Identities=11%  Similarity=0.060  Sum_probs=186.5

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ..|.+++|+|+ + +++.+ .|++|++||+.+++..            .      ...|...+.++.|+| |+++|+++ 
T Consensus        82 ~~v~~~~~spd-~-~~~~~-~~~~i~~~d~~~~~~~------------~------l~~~~~~~~~~~~Sp-dG~~la~~-  138 (706)
T 2z3z_A           82 FPSFRTLDAGR-G-LVVLF-TQGGLVGFDMLARKVT------------Y------LFDTNEETASLDFSP-VGDRVAYV-  138 (706)
T ss_dssp             CCCEEEEETTT-T-EEEEE-ETTEEEEEETTTTEEE------------E------EECCTTCCTTCEECT-TSSEEEEE-
T ss_pred             cCceeEEECCC-C-eEEEE-ECCEEEEEECCCCceE------------E------ccCCcccccCCcCCC-CCCEEEEE-
Confidence            56999999975 5 44444 4599999999765321            0      012444566778887 78899885 


Q ss_pred             CCCcEEEEECCC-----CeEEEEEecCCe---------------eEEEeeccCCCCccEEEEEe----------------
Q 013545          124 YDHYVKVWDTNC-----TRVVMNFKMPGK---------------VYRTAMSPLAASHMLIAAGT----------------  167 (441)
Q Consensus       124 ~D~~i~iWd~~~-----~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~las~s----------------  167 (441)
                      .|++|++||+.+     ++..........               +..+.++|++   ..|++++                
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~  215 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHP  215 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCS
T ss_pred             ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCC
Confidence            789999999988     765432222211               3567788864   3566665                


Q ss_pred             -----------------CCCcEEEEECCCCceeeee--cCCCCCeEEEEEecCCCcEEEEeecCC-----cEEEEEcCCC
Q 013545          168 -----------------EDVQVRLCDIASGAISQTL--SGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRRA  223 (441)
Q Consensus       168 -----------------~d~~I~vwdl~~~~~~~~l--~~h~~~v~~v~fsp~~~~~l~s~s~Dg-----~I~iWD~~~~  223 (441)
                                       .+..|++||+++++.....  ..|...+.+++|+|+++. |++++.|+     .|++||+.++
T Consensus       216 ~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          216 LEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             SSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTC
T ss_pred             CCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCC
Confidence                             3467999999998865443  257778999999999985 56666665     8999999876


Q ss_pred             ceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee
Q 013545          224 GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH  303 (441)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  303 (441)
                      .....+....                                                                  ....
T Consensus       295 ~~~~~~~~~~------------------------------------------------------------------~~~~  308 (706)
T 2z3z_A          295 RFVRTLFVET------------------------------------------------------------------DKHY  308 (706)
T ss_dssp             CEEEEEEEEE------------------------------------------------------------------CSSC
T ss_pred             ceeeEEEEcc------------------------------------------------------------------CCCe
Confidence            3322210000                                                                  0000


Q ss_pred             ccCeEEEEEcc--CCCEEEEeecCCcEEEeeCC-CCCceeeeeeeEEeccCcceE-EEeeCCCcEEEEeCC-C-----ce
Q 013545          304 YGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVE-SGRNTLVNFETVRLQTSKPIQ-LATTQDPAVVFVPCM-T-----AV  373 (441)
Q Consensus       304 ~~~v~~l~~s~--dg~~l~sgs~D~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-----~~  373 (441)
                      ...+.+++|+|  ||++|++++.|++++||.+. ++.. .   ..+......... +++++++..++..+. .     .+
T Consensus       309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~-~---~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL-I---RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE-E---EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE-E---EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence            11235678999  99999999999999999876 3321 1   111111112223 688999987765533 2     45


Q ss_pred             EEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC----CcEEEeCCCCCC
Q 013545          374 KAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRHI  424 (441)
Q Consensus       374 ~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D----~~i~vW~~~~~~  424 (441)
                      ..||+.+++ ...+. |...+.+++|||||++|+....+    ..|.+|++.++.
T Consensus       385 ~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          385 YCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            555666665 34444 67789999999999998865443    459999998775

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=5.4e-20  Score=187.21  Aligned_cols=270  Identities=10%  Similarity=0.026  Sum_probs=182.1

Q ss_pred             CCceeEEEccCCCCcEEEEeeC-CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      ...|++++|+| ||++||+++. ||+++||++.++...                 +....|...|..+.|+| | .++++
T Consensus        21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~-----------------~lt~~~~~~~~~~~~sp-d-~~l~~   80 (582)
T 3o4h_A           21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETV-----------------KLNREPINSVLDPHYGV-G-RVILV   80 (582)
T ss_dssp             HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEE-----------------ECCSSCCSEECEECTTC-S-EEEEE
T ss_pred             ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcE-----------------eeecccccccccccCCC-C-eEEEE
Confidence            35799999997 5788999887 999999997543210                 11112335788888886 5 67777


Q ss_pred             EeC---CCcEEEEECCC---CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          122 GSY---DHYVKVWDTNC---TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       122 gs~---D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      ++.   +...++|.+..   +... .+..........+++++. ..++++++. +.+.+||+++++.......+ .  .+
T Consensus        81 ~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~-~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~-~--~~  154 (582)
T 3o4h_A           81 RDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGE-AVVFTGATE-DRVALYALDGGGLRELARLP-G--FG  154 (582)
T ss_dssp             EECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSS-CEEEEEECS-SCEEEEEEETTEEEEEEEES-S--CE
T ss_pred             eccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCC-eEEEEecCC-CCceEEEccCCcEEEeecCC-C--ce
Confidence            775   56667765432   2222 222222334557777653 334555554 45569999998765544433 3  88


Q ss_pred             EEEecCCCcEEEEeecC----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          196 VEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~D----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      ++|+|||+. +++++.|    +.|++||+.+++...                                            
T Consensus       155 ~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~~~--------------------------------------------  189 (582)
T 3o4h_A          155 FVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGLRV--------------------------------------------  189 (582)
T ss_dssp             EEEEEETTE-EEEEEEEETTEEEEEEEETTTCCCEE--------------------------------------------
T ss_pred             EEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCceE--------------------------------------------
Confidence            999999985 5666666    789999987643211                                            


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC--cEEEeeCCCCCceeeeeeeEEec
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS--RIRLWDVESGRNTLVNFETVRLQ  349 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~--~i~~wd~~~~~~~~~~~~~~~~~  349 (441)
                                                  +..|.+.+..++|||||+.|++++.|+  +|++||+.+++..  .+.   ..
T Consensus       190 ----------------------------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~---~~  236 (582)
T 3o4h_A          190 ----------------------------FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLE---LP  236 (582)
T ss_dssp             ----------------------------ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECC---CS
T ss_pred             ----------------------------eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--Ecc---CC
Confidence                                        123445678999999999999888898  8999999987643  111   11


Q ss_pred             cCcceEEE--------eeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc---EEE
Q 013545          350 TSKPIQLA--------TTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ---ILV  417 (441)
Q Consensus       350 ~~~~~~~~--------~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~---i~v  417 (441)
                      ......++        +++|+.++++... +.+++|++  |+....   +.+.|.+++|+ |++++++++.+.+   +.+
T Consensus       237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~  310 (582)
T 3o4h_A          237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVS  310 (582)
T ss_dssp             CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCCCCCCeEEE
Confidence            11122233        8999976666543 68999999  765553   34678999999 9999999888854   777


Q ss_pred             eCCCC
Q 013545          418 WCPSR  422 (441)
Q Consensus       418 W~~~~  422 (441)
                      |+..+
T Consensus       311 ~d~~~  315 (582)
T 3o4h_A          311 LPSGE  315 (582)
T ss_dssp             ETTCC
T ss_pred             EcCCC
Confidence            77654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=8e-19  Score=166.42  Aligned_cols=251  Identities=9%  Similarity=0.087  Sum_probs=163.5

Q ss_pred             cceeEEEEeeCCCCEEEEEeC---CCcEEEEECCCCeE--EEEE-ecCCeeEEEeeccCCCCccEEEEEe-CCCcEEEEE
Q 013545          104 YAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRV--VMNF-KMPGKVYRTAMSPLAASHMLIAAGT-EDVQVRLCD  176 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~las~s-~d~~I~vwd  176 (441)
                      ..+..++++| ++. +++++.   ++.|.+||+.++..  +..+ .....+..+++++++.   +|++++ .++.|.+|+
T Consensus        40 ~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~---~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           40 QNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ---LVYSANYHKGTAEVMK  114 (347)
T ss_dssp             SCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT---EEEEEETTTTEEEEEE
T ss_pred             CCcceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC---EEEEEeCCCCEEEEEE
Confidence            4455678877 676 544443   68999999977763  3332 2334556778887643   455555 788999999


Q ss_pred             CC-CCc--eeeeecC---------CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccc
Q 013545          177 IA-SGA--ISQTLSG---------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK  244 (441)
Q Consensus       177 l~-~~~--~~~~l~~---------h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~  244 (441)
                      +. ++.  .+..+..         +...+.+++|+|+++ ++++...++.|++||+...+.+......            
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~------------  181 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVL------------  181 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEE------------
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeE------------
Confidence            95 333  2222221         223488999999998 7888888899999998732111100000            


Q ss_pred             ccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-Eee
Q 013545          245 RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAG  323 (441)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs  323 (441)
                                                                             .......+..++|+|||++|+ ++.
T Consensus       182 -------------------------------------------------------~~~~g~~p~~~~~spdg~~l~v~~~  206 (347)
T 3hfq_A          182 -------------------------------------------------------TMEAGFGPRHLVFSPDGQYAFLAGE  206 (347)
T ss_dssp             -------------------------------------------------------ECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             -------------------------------------------------------EcCCCCCCceEEECCCCCEEEEEeC
Confidence                                                                   000011356799999999655 467


Q ss_pred             cCCcEEEeeCCCCCceeeeeeeEEecc------CcceEEEeeCCCcEEEEeC--CCceEEEEccC---CceEeeeccccc
Q 013545          324 SDSRIRLWDVESGRNTLVNFETVRLQT------SKPIQLATTQDPAVVFVPC--MTAVKAFDIWS---GKTCLTFRGHYE  392 (441)
Q Consensus       324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~---~~~~~~l~gh~~  392 (441)
                      .+++|++|++.................      ..+..+++++++..+++.+  ...+.+|++..   .+.+..+..|..
T Consensus       207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~  286 (347)
T 3hfq_A          207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD  286 (347)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS
T ss_pred             CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC
Confidence            789999999875222221111111111      2355688999999876543  46899999962   245566777777


Q ss_pred             ceEEEEEcCCCCeEEEeecC-CcEEEe--CCCCCCCCC
Q 013545          393 YVNCCCFSSQDQELYTGGND-RQILVW--CPSRHISDG  427 (441)
Q Consensus       393 ~v~~v~fspd~~~l~s~s~D-~~i~vW--~~~~~~~~~  427 (441)
                      .+.+++|+|||++|++++.+ +.|.+|  +..++++..
T Consensus       287 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          287 FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            78999999999998887764 899999  766776553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=8.2e-19  Score=164.99  Aligned_cols=235  Identities=8%  Similarity=0.085  Sum_probs=169.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCCCe
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGI  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~v  193 (441)
                      .+..+++++.+++|++||+.+++.+..+..+.....+.+++++  ..+++++..++.|.+||+++++. ...+..+....
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDC--SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM   86 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSS--CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCC--CEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence            3445788999999999999999988777754433377788764  24555556688999999999987 77777777766


Q ss_pred             EEEEEecCCCcEEEEeecC-C--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          194 MTVEWSTSSEWILVTGGCD-G--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~D-g--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      .+++|+|+++++ +++..+ +  .|++||+.+++....+.                                        
T Consensus        87 ~~~~~s~dg~~l-~~~~~~~~~~~i~v~d~~~~~~~~~~~----------------------------------------  125 (331)
T 3u4y_A           87 ADVDITPDDQFA-VTVTGLNHPFNMQSYSFLKNKFISTIP----------------------------------------  125 (331)
T ss_dssp             CCEEECTTSSEE-EECCCSSSSCEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred             cceEECCCCCEE-EEecCCCCcccEEEEECCCCCeEEEEE----------------------------------------
Confidence            669999999865 455544 3  89999998765433221                                        


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCc-EEEeeCCCCCceeeeeeeEEe
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSR-IRLWDVESGRNTLVNFETVRL  348 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~-i~~wd~~~~~~~~~~~~~~~~  348 (441)
                                                      +...+.+++|+|||++|+ +...++. |++|++...............
T Consensus       126 --------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  173 (331)
T 3u4y_A          126 --------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS  173 (331)
T ss_dssp             --------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred             --------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence                                            112357899999998554 5566688 999999864322111111112


Q ss_pred             ccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCce---EeeecccccceEEEEEcCCCCeEEE-eecCCcEEEeCCCC
Q 013545          349 QTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKT---CLTFRGHYEYVNCCCFSSQDQELYT-GGNDRQILVWCPSR  422 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~---~~~l~gh~~~v~~v~fspd~~~l~s-~s~D~~i~vW~~~~  422 (441)
                      ....+..+++++++..+++.+  ...+.+||+.+++.   +..+..+ ..+.+++|+|||++|+. ...++.|.+|++.+
T Consensus       174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence            234567789999998766654  36799999999988   7777754 56789999999997764 44578899999988


Q ss_pred             CCC
Q 013545          423 HIS  425 (441)
Q Consensus       423 ~~~  425 (441)
                      ++.
T Consensus       253 ~~~  255 (331)
T 3u4y_A          253 GTL  255 (331)
T ss_dssp             TEE
T ss_pred             Cce
Confidence            765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=6.7e-19  Score=166.83  Aligned_cols=242  Identities=13%  Similarity=0.101  Sum_probs=179.3

Q ss_pred             ceeEEEEeeCCCCEEEEEeC-------CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545          105 AISSAIWYPVDTGLFVTGSY-------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~-------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      .+..+.+++ ++++++.++.       +++|.+||..+++.+..+........+.+++++  ..+++++..++.|.+||+
T Consensus        42 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           42 GAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTT--QTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             SEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTT--TEEEEEETTTTEEEEEET
T ss_pred             CccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCC--CEEEEEecCCCEEEEEeC
Confidence            455677776 6777777664       568999999999988888776666677777754  346666677899999999


Q ss_pred             CCCceeeeecCCCCC---------eEEEEEecCCCcEEEEe-ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccc
Q 013545          178 ASGAISQTLSGHRDG---------IMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKS  247 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~---------v~~v~fsp~~~~~l~s~-s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (441)
                      ++++.+..+..+...         +.++.|+|+++.+++++ +.++.|.+||+.+++....+.                 
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-----------------  181 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-----------------  181 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-----------------
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-----------------
Confidence            999988777654432         68899999998766555 357899999998765433221                 


Q ss_pred             cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCc
Q 013545          248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  327 (441)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  327 (441)
                                                                            .+...+.+++|+|+|++|++++.++.
T Consensus       182 ------------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~  207 (353)
T 3vgz_A          182 ------------------------------------------------------NTGKMSTGLALDSEGKRLYTTNADGE  207 (353)
T ss_dssp             ------------------------------------------------------CCCTTCCCCEEETTTTEEEEECTTSE
T ss_pred             ------------------------------------------------------CCCCccceEEECCCCCEEEEEcCCCe
Confidence                                                                  01122456789999999999999999


Q ss_pred             EEEeeCCCCCceeeeeeeEEe----ccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          328 IRLWDVESGRNTLVNFETVRL----QTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       328 i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      |.+||+.+++...    ....    ....+..+++++++..+++.+.  ..+.+||..+++....+..+..  .+++|+|
T Consensus       208 i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~  281 (353)
T 3vgz_A          208 LITIDTADNKILS----RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNP  281 (353)
T ss_dssp             EEEEETTTTEEEE----EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEET
T ss_pred             EEEEECCCCeEEE----EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECC
Confidence            9999999875321    1121    1223445789999987776643  6899999999998887765442  6799999


Q ss_pred             CCCeEE-EeecCCcEEEeCCCCCCCC
Q 013545          402 QDQELY-TGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       402 d~~~l~-s~s~D~~i~vW~~~~~~~~  426 (441)
                      ||++++ +...++.|.+|+..+++..
T Consensus       282 dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          282 ARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCCeEEEEECCCCeEE
Confidence            999665 4557899999999877644

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=3.6e-18  Score=160.90  Aligned_cols=282  Identities=11%  Similarity=0.136  Sum_probs=176.7

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCC-CcEEEEECC--CCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASD-SSVAVYDVQ--RATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~D-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      .+|...+.+++|+| ++++|++++.+ +.|++|++.  ++..          ..+...     ..+. .+..+.++| ++
T Consensus        34 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~-----~~~~-~~~~~~~s~-dg   95 (343)
T 1ri6_A           34 VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGAL----------TFAAES-----ALPG-SLTHISTDH-QG   95 (343)
T ss_dssp             EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE----------EEEEEE-----ECSS-CCSEEEECT-TS
T ss_pred             EecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCce----------eecccc-----ccCC-CCcEEEEcC-CC
Confidence            35778899999997 57778777776 999999986  3221          001111     1122 567788876 67


Q ss_pred             CEEEEEe-CCCcEEEEECC---CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceee----eec
Q 013545          117 GLFVTGS-YDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQ----TLS  187 (441)
Q Consensus       117 ~~l~sgs-~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~----~l~  187 (441)
                      +++++++ .++.|.+||+.   ....+..+.....+..+.+++++.  .+++++..++.|++||+.+ ++...    .+.
T Consensus        96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~  173 (343)
T 1ri6_A           96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR--TLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  173 (343)
T ss_dssp             SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCC--EEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence            7776655 48899999994   334444554445566777887542  3444444889999999987 65432    223


Q ss_pred             C-CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          188 G-HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       188 ~-h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      . ....+.+++|+|+++++++++..++.|++||+.... .+......                                 
T Consensus       174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~---------------------------------  220 (343)
T 1ri6_A          174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL---------------------------------  220 (343)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE---------------------------------
T ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec---------------------------------
Confidence            2 345788999999998776777789999999985311 00000000                                 


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeee
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFE  344 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~  344 (441)
                                           .....        .......+..++|+|+|++|+ ++..|+.|++||+...........
T Consensus       221 ---------------------~~~~~--------~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~  271 (343)
T 1ri6_A          221 ---------------------DMMPE--------NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  271 (343)
T ss_dssp             ---------------------ECSCT--------TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             ---------------------cccCc--------cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence                                 00000        000123467899999998776 556899999999983211112122


Q ss_pred             eEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc--cCCce--EeeecccccceEEEEEcCCCCe
Q 013545          345 TVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKT--CLTFRGHYEYVNCCCFSSQDQE  405 (441)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~--~~~l~gh~~~v~~v~fspd~~~  405 (441)
                      .... ...+..+++++++..+++++.  ..+.+|++  .+++.  +..+... ....+++|.|+.+.
T Consensus       272 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          272 FQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG  336 (343)
T ss_dssp             EEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred             eecC-CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence            2222 233677899999998888763  68999955  45543  3344432 44678888887543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=1.3e-18  Score=164.37  Aligned_cols=234  Identities=15%  Similarity=0.162  Sum_probs=166.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC---
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH---  189 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h---  189 (441)
                      ++.++++++.|++|++||+.+++.+..+..+.  ....+.+++++  ..+++++..++.|.+||+++++....+..+   
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~   87 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN--RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP   87 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC--CEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc
Confidence            56789999999999999999999888887765  56677888764  345666677899999999999887766532   


Q ss_pred             ---CCCeEEEEEecCCCcEEEEeecC------------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          190 ---RDGIMTVEWSTSSEWILVTGGCD------------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       190 ---~~~v~~v~fsp~~~~~l~s~s~D------------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                         ...+.+++|+|+++++ ++++.+            +.|.+||+.+++....+.                        
T Consensus        88 ~~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------------------------  142 (349)
T 1jmx_B           88 GEVGRSMYSFAISPDGKEV-YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR------------------------  142 (349)
T ss_dssp             TEEEECSSCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE------------------------
T ss_pred             ccccccccceEECCCCCEE-EEEcccccccccccccCCCeEEEEECCCccccceee------------------------
Confidence               2337889999999865 555544            899999987532110000                        


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                                                                   ...+...+.+++|+|||+ ++.++.  .|++||+.
T Consensus       143 ---------------------------------------------~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~  174 (349)
T 1jmx_B          143 ---------------------------------------------TFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVK  174 (349)
T ss_dssp             ---------------------------------------------EEECCSSCCCEEECTTSC-EEEESS--SEEEECTT
T ss_pred             ---------------------------------------------eccCCCcccceeECCCCc-EEEccC--cEEEEeCC
Confidence                                                         001122467788999999 554443  49999998


Q ss_pred             CCCceeeeeee-------------------------------EEec----------------------------------
Q 013545          335 SGRNTLVNFET-------------------------------VRLQ----------------------------------  349 (441)
Q Consensus       335 ~~~~~~~~~~~-------------------------------~~~~----------------------------------  349 (441)
                      +++.... +..                               ....                                  
T Consensus       175 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (349)
T 1jmx_B          175 TGKYTVA-LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL  253 (349)
T ss_dssp             TCCEEEE-ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCceecc-ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccC
Confidence            7653211 100                               0000                                  


Q ss_pred             cCcceEEEeeC-CCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          350 TSKPIQLATTQ-DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       350 ~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ...+..+++++ ++..++++ ...+.+||+.+++....+..+ ..+.+++|+|||++|++++.++.|++|++.+++..
T Consensus       254 ~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          254 TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence            01223455668 88888877 778999999999888777643 34789999999999998888999999999887643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=1.3e-18  Score=188.91  Aligned_cols=277  Identities=12%  Similarity=0.114  Sum_probs=201.6

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +.+|.+.|.++.|++ + .++++++.|++++||.+......     .           .....|. .+....++| |+..
T Consensus       199 l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~-----~-----------~~l~~~~-~~~~~~~Sp-DG~~  258 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKD-----L-----------RKHTSFT-DYYPRHLNT-DGRR  258 (1045)
T ss_dssp             EECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCS-----C-----------EECCCCC-SSCEEEEEE-SSSC
T ss_pred             CcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCc-----c-----------eEecCCC-CcceeeEcC-CCCE
Confidence            378999999999985 3 67788889999999986431100     0           0011232 344566776 7888


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecC------------CeeEEEeec-cCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMP------------GKVYRTAMS-PLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                      ++++ .|+.|.+||+..... ..+...            +.+..+.++ |++   ..|++++ ++.|.+|++.+++.. .
T Consensus       259 la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~~~~-~  331 (1045)
T 1k32_A          259 ILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGTYVL-K  331 (1045)
T ss_dssp             EEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSSBEE-E
T ss_pred             EEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCCceE-E
Confidence            8887 489999999954443 333321            146678888 764   3466555 789999999888754 4


Q ss_pred             ecCCCC-CeEEEEEecCCCcEEEEeecCCcEE-EEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          186 LSGHRD-GIMTVEWSTSSEWILVTGGCDGAIR-FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       186 l~~h~~-~v~~v~fsp~~~~~l~s~s~Dg~I~-iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      +..|.. .+..++|+ +++. |+.++.++.+. +||+..+....                                    
T Consensus       332 ~~~~~~~~~~~~~~s-dg~~-l~~~s~~~~l~~~~d~~~~~~~~------------------------------------  373 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-TKVA-FIHGTREGDFLGIYDYRTGKAEK------------------------------------  373 (1045)
T ss_dssp             CSCCSCEEEEEECSS-SEEE-EEEEETTEEEEEEEETTTCCEEE------------------------------------
T ss_pred             ccCCCcceEEeeeEc-CCCe-EEEEECCCceEEEEECCCCCceE------------------------------------
Confidence            667777 89999999 8875 56777777777 88876432110                                    


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~  343 (441)
                                                          ...|...+..++|||||++|++++.|++|++||+.+++....  
T Consensus       374 ------------------------------------l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~--  415 (1045)
T 1k32_A          374 ------------------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI--  415 (1045)
T ss_dssp             ------------------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred             ------------------------------------ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe--
Confidence                                                013445688999999999999999999999999998763221  


Q ss_pred             eeEEeccCcceEEEeeCCCcEEEEeCC-----------CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545          344 ETVRLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  412 (441)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D  412 (441)
                        ...+......++++||+..+++.+.           ..+++||+.+++ ...+.+|...+.+++|+|||++|+.++.+
T Consensus       416 --~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          416 --ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             --EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             --ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence              1122334467889999998776543           379999998887 77888899999999999999999999998


Q ss_pred             CcEEEeCCC
Q 013545          413 RQILVWCPS  421 (441)
Q Consensus       413 ~~i~vW~~~  421 (441)
                      +..++|+..
T Consensus       493 ~~~~~~~~~  501 (1045)
T 1k32_A          493 SLDPSPDRV  501 (1045)
T ss_dssp             CCCCEECSS
T ss_pred             cCCcCcchh
Confidence            888888754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=1.8e-18  Score=180.46  Aligned_cols=280  Identities=9%  Similarity=0.014  Sum_probs=183.5

Q ss_pred             ccceeeecCCCC---ceeEEEccCCCCcEEEEeeCC---------CcEEEEECCCCcccCCCCceeccceeEEeeccccc
Q 013545           33 SNYKEIVSPHKG---SINSLQVDLTEERYLLSGASD---------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH  100 (441)
Q Consensus        33 ~~~~~~~~~H~~---~V~~l~~s~~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (441)
                      .+...++.+|..   .|.+++||| ++++|++++.|         +.|.+||+.++....    +           ....
T Consensus        47 g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----l-----------~~~~  110 (723)
T 1xfd_A           47 NTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS----L-----------DPPE  110 (723)
T ss_dssp             CCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE----C-----------CCTT
T ss_pred             CcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEe----c-----------cCCc
Confidence            333455666765   499999997 58899999875         778899998764210    0           1112


Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-C------------------eeEEEeeccCCCCcc
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-G------------------KVYRTAMSPLAASHM  161 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~  161 (441)
                      +|...+..+.|+| ||+.||.++. ++|++||+.+++........ .                  .+..+.|+|++.   
T Consensus       111 ~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~---  185 (723)
T 1xfd_A          111 VSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---  185 (723)
T ss_dssp             CCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---
T ss_pred             cccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC---
Confidence            4555577778887 7889999886 79999999888765443321 1                  125678888653   


Q ss_pred             EEEEEeCCC----------------------------------cEEEEECCCCceeeeecCC------CCCeEEEEEecC
Q 013545          162 LIAAGTEDV----------------------------------QVRLCDIASGAISQTLSGH------RDGIMTVEWSTS  201 (441)
Q Consensus       162 ~las~s~d~----------------------------------~I~vwdl~~~~~~~~l~~h------~~~v~~v~fsp~  201 (441)
                      .|++++.|.                                  .|++||+.+++....+..+      ...+.+++|+|+
T Consensus       186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD  265 (723)
T 1xfd_A          186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS  265 (723)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred             EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence            565555332                                  7999999998865666654      667899999999


Q ss_pred             CCcEEEEeec----CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          202 SEWILVTGGC----DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       202 ~~~~l~s~s~----Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      ++. +++.+.    +..|++||+.++++...+..                                              
T Consensus       266 g~~-l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----------------------------------------------  298 (723)
T 1xfd_A          266 TKV-AVTWLNRAQNVSILTLCDATTGVCTKKHED----------------------------------------------  298 (723)
T ss_dssp             SEE-EEEEEETTSCEEEEEEEETTTCCEEEEEEE----------------------------------------------
T ss_pred             CeE-EEEEEcCCCCeEEEEEEeCCCCcceEEEEe----------------------------------------------
Confidence            984 555443    35799999987655433211                                              


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCe----EEEEEccCCCEEEE--eecCC------cEEEee-CCCCC---ceee
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAV----TGLKVTEDGMYLLS--AGSDS------RIRLWD-VESGR---NTLV  341 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~l~~s~dg~~l~s--gs~D~------~i~~wd-~~~~~---~~~~  341 (441)
                                              .+.+.+    ..++|+|||+.|+.  +..|+      .|.+|| ..++.   ... 
T Consensus       299 ------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-  353 (723)
T 1xfd_A          299 ------------------------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS-  353 (723)
T ss_dssp             ------------------------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB-
T ss_pred             ------------------------ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE-
Confidence                                    011111    25689999997764  45666      577777 34333   111 


Q ss_pred             eeeeEEeccCcce-EEEeeCCCcEEEEe-CC---CceEEEEccCC--ceEeeecc---cccceEEEEEcCCCCeEEEe
Q 013545          342 NFETVRLQTSKPI-QLATTQDPAVVFVP-CM---TAVKAFDIWSG--KTCLTFRG---HYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       342 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~---~~~~~wd~~~~--~~~~~l~g---h~~~v~~v~fspd~~~l~s~  409 (441)
                       +   ........ .+++++|+..++.. ..   ..+++|++...  .....+.+   |...+..++|||||++|+..
T Consensus       354 -l---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          354 -I---TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             -S---CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             -e---ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence             1   00011112 25789999987654 33   56899998543  23445554   67789999999999988743

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=2.1e-18  Score=158.55  Aligned_cols=226  Identities=8%  Similarity=0.023  Sum_probs=166.1

Q ss_pred             EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCC-CCCeEEEEE
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH-RDGIMTVEW  198 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h-~~~v~~v~f  198 (441)
                      +++.|++|++||+.+++......+.+.+..+.++|++.   +|++++ ++.|++||+++ ++....+.+| ...+.+++|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK---YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI   92 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS---EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCC---EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence            45789999999999998877777777888999998653   666665 78999999999 8877766666 477899999


Q ss_pred             ecCCCcEEEEee--cCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          199 STSSEWILVTGG--CDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       199 sp~~~~~l~s~s--~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +|+++. |++++  .++.++||.++... ....                                               
T Consensus        93 spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~-----------------------------------------------  124 (297)
T 2ojh_A           93 SPDGAL-YAISDKVEFGKSAIYLLPSTGGTPRL-----------------------------------------------  124 (297)
T ss_dssp             CTTSSE-EEEEECTTTSSCEEEEEETTCCCCEE-----------------------------------------------
T ss_pred             CCCCCE-EEEEEeCCCCcceEEEEECCCCceEE-----------------------------------------------
Confidence            999985 56666  44677777764210 0000                                               


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                                               ..+...+..++|+||+++|+ +++.|+.+++|++........   .+........
T Consensus       125 -------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~  176 (297)
T 2ojh_A          125 -------------------------MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRND  176 (297)
T ss_dssp             -------------------------CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEE
T ss_pred             -------------------------eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccc
Confidence                                     00112377889999999887 788999999998643211111   1111234456


Q ss_pred             EEEeeCCCcEEEEeC--CCceEEEEcc-CCceEeeecccccceEEEEEcCCCCeEEEeecC-----------CcEEEeCC
Q 013545          355 QLATTQDPAVVFVPC--MTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND-----------RQILVWCP  420 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~--~~~~~~wd~~-~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D-----------~~i~vW~~  420 (441)
                      .+.+++++..++..+  ...+++|++. .+.....+..|...+.+++|+|||++|+.++.|           ..|.+|++
T Consensus       177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred             cceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence            788899998776654  4678999986 566778888899999999999999999988776           56999999


Q ss_pred             CCCCCC
Q 013545          421 SRHISD  426 (441)
Q Consensus       421 ~~~~~~  426 (441)
                      .++...
T Consensus       257 ~~~~~~  262 (297)
T 2ojh_A          257 DGGNVE  262 (297)
T ss_dssp             TSCSCE
T ss_pred             CCCCce
Confidence            887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=5.6e-19  Score=172.85  Aligned_cols=203  Identities=11%  Similarity=0.066  Sum_probs=144.2

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCC-----------Ce-----EEEEEecCCeeEEEeeccCCCCccEEE----E
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-----------TR-----VVMNFKMPGKVYRTAMSPLAASHMLIA----A  165 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~la----s  165 (441)
                      ++.+++++ ++.++++++.|+ +++|+...           ..     ....+.+.+.+..++|++++   .+|+    +
T Consensus        39 ~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~lav~~~s  113 (434)
T 2oit_A           39 SSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN---LTLSACMMS  113 (434)
T ss_dssp             CBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS---CEEEEEEEE
T ss_pred             ccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC---CEEEEEEec
Confidence            45566766 577899999987 89987421           01     11233445678899999864   3666    7


Q ss_pred             EeCCCcEEEEECCCC--------ce---eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCc
Q 013545          166 GTEDVQVRLCDIASG--------AI---SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS  234 (441)
Q Consensus       166 ~s~d~~I~vwdl~~~--------~~---~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~  234 (441)
                      |+.|+.|++||++++        +.   +..+.+|...|.+++|+|++..+|++++.||+|++||++++.+...      
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~------  187 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA------  187 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE------
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee------
Confidence            888999999998765        21   4567789999999999998545789999999999999986532110      


Q ss_pred             cccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc
Q 013545          235 QLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE  314 (441)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  314 (441)
                                                                                       ..+|...|++++|+|
T Consensus       188 -----------------------------------------------------------------~~~~~~~v~~v~wsp  202 (434)
T 2oit_A          188 -----------------------------------------------------------------TLPSTVAVTSVCWSP  202 (434)
T ss_dssp             -----------------------------------------------------------------EECGGGCEEEEEECT
T ss_pred             -----------------------------------------------------------------ccCCCCceeEEEEcC
Confidence                                                                             123667899999999


Q ss_pred             CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccce
Q 013545          315 DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYV  394 (441)
Q Consensus       315 dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v  394 (441)
                      +|++|++|+.|++|++||++ ++..    .......                                  ..-..|...|
T Consensus       203 dg~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~----------------------------------~~~~~~~~~v  243 (434)
T 2oit_A          203 KGKQLAVGKQNGTVVQYLPT-LQEK----KVIPCPP----------------------------------FYESDHPVRV  243 (434)
T ss_dssp             TSSCEEEEETTSCEEEECTT-CCEE----EEECCCT----------------------------------TCCTTSCEEE
T ss_pred             CCCEEEEEcCCCcEEEEccC-Cccc----ccccCCc----------------------------------ccCCCCceeE
Confidence            99999999999999999987 3211    0000000                                  0001355679


Q ss_pred             EEEEEcCCCCeEEEe-ecCC------cEEEeCCCCC
Q 013545          395 NCCCFSSQDQELYTG-GNDR------QILVWCPSRH  423 (441)
Q Consensus       395 ~~v~fspd~~~l~s~-s~D~------~i~vW~~~~~  423 (441)
                      .+++|++++.++++. ..|+      .+++|++...
T Consensus       244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            999999999888643 3343      3899998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=4.3e-17  Score=155.40  Aligned_cols=253  Identities=10%  Similarity=0.037  Sum_probs=161.2

Q ss_pred             ccceeEEEEeeCCCCEEEEEeCC----CcEEEEECCC--CeE--EEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545          103 KYAISSAIWYPVDTGLFVTGSYD----HYVKVWDTNC--TRV--VMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~sgs~D----~~i~iWd~~~--~~~--~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      ...+..++++| ++.+|++++.+    +.|.+|++..  +..  +...... .....+++    .+..++++...++.|.
T Consensus        49 ~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~  123 (361)
T 3scy_A           49 VANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSIT  123 (361)
T ss_dssp             CSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEE
T ss_pred             CCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEE
Confidence            34455677776 78889998886    7999998764  443  2233322 23333444    2334555555788999


Q ss_pred             EEECCCCceeeee------c--------CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce------eeEe-ccC
Q 013545          174 LCDIASGAISQTL------S--------GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC------FRVL-DQS  232 (441)
Q Consensus       174 vwdl~~~~~~~~l------~--------~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~------~~~~-~~~  232 (441)
                      +|++.....+..+      .        .+...+.+++|+|+++++++++..++.|++|++.....      +... .. 
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~-  202 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP-  202 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE-
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc-
Confidence            9999754332211      1        12334588999999987777776789999999864321      0000 00 


Q ss_pred             CccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEE
Q 013545          233 QSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV  312 (441)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  312 (441)
                                                                            .          .....+...+..++|
T Consensus       203 ------------------------------------------------------~----------~~~~~~~~~~~~~~~  218 (361)
T 3scy_A          203 ------------------------------------------------------E----------AFKVAPGSGPRHLIF  218 (361)
T ss_dssp             ------------------------------------------------------E----------EEECCTTCCEEEEEE
T ss_pred             ------------------------------------------------------c----------ceecCCCCCCeEEEE
Confidence                                                                  0          000011223678999


Q ss_pred             ccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeEEe---ccCcceEEEeeCCCcEEEEeCC---CceEEEEcc--CCc-
Q 013545          313 TEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRL---QTSKPIQLATTQDPAVVFVPCM---TAVKAFDIW--SGK-  382 (441)
Q Consensus       313 s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~wd~~--~~~-  382 (441)
                      +|||+++++++ .+++|++||+.+++...  ......   ....+..+++++|+..+++...   ..+.+|++.  +++ 
T Consensus       219 spdg~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~  296 (361)
T 3scy_A          219 NSDGKFAYLINEIGGTVIAFRYADGMLDE--IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL  296 (361)
T ss_dssp             CTTSSEEEEEETTTCEEEEEEEETTEEEE--EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE
T ss_pred             cCCCCEEEEEcCCCCeEEEEEecCCceEE--eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE
Confidence            99999877666 68999999998654211  111111   1123457889999998866543   579999995  455 


Q ss_pred             -eEeeecccccceEEEEEcCCCCeEEEee-cCCcEEEe--CCCCCCCCCc
Q 013545          383 -TCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVW--CPSRHISDGV  428 (441)
Q Consensus       383 -~~~~l~gh~~~v~~v~fspd~~~l~s~s-~D~~i~vW--~~~~~~~~~~  428 (441)
                       .+..+.. ...+.+++|+|||++|++++ .++.|.+|  ++.++++..+
T Consensus       297 ~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          297 TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred             EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence             3444444 45688999999999988877 57899995  6667765433

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=1e-18  Score=170.96  Aligned_cols=172  Identities=13%  Similarity=0.147  Sum_probs=124.2

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE-
Q 013545           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV-  120 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~-  120 (441)
                      +...++.|++++. +.++++++.|+ ++||+...........  .....+..........|...|.++.|++ ++.+|+ 
T Consensus        35 ~~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav  109 (434)
T 2oit_A           35 PKERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPG--DDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSA  109 (434)
T ss_dssp             CCSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTT--CCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEE
T ss_pred             CCCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccc--cCcccccccCccccccCCCcccEEEEcC-CCCEEEE
Confidence            3457899999964 56899999988 9999864221110000  0000000000001124567799999987 688998 


Q ss_pred             ---EEeCCCcEEEEECCCC--------eEEEEEe----cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          121 ---TGSYDHYVKVWDTNCT--------RVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       121 ---sgs~D~~i~iWd~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                         +|+.|++|++||+.++        +.+..+.    +.+.+.++.|+|..  ..+|++++.|+.|++||++++.....
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~--~~~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV--PSMVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC--TTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC--CCEEEEEECCCeEEEEEcCCCcceee
Confidence               8999999999998654        2222222    34668899999863  35899999999999999999977767


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      ..+|...|.+++|+|++++ |++|+.||+|++||++
T Consensus       188 ~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT
T ss_pred             ccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC
Confidence            7789999999999999985 7899999999999987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=5.3e-18  Score=172.48  Aligned_cols=232  Identities=11%  Similarity=0.046  Sum_probs=164.2

Q ss_pred             cccceeEEEEeeCCCCEEEEEeC-CCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeC---CCcEEEEE
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSY-DHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTE---DVQVRLCD  176 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~-D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~---d~~I~vwd  176 (441)
                      +..+|.++.+++ ||++||+++. |++++||++.++......... ..+....++|+    .+++++..   +...++|.
T Consensus        20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd----~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG----RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS----EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC----eEEEEeccCCCCcceEEEE
Confidence            345688888887 8999999887 999999999776654433333 35677777764    36666554   44556655


Q ss_pred             CCC---CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          177 IAS---GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       177 l~~---~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      +..   +... .+..+. .+...+|+|+++.++++++.++.+.+||+.++++....                        
T Consensus        95 ~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~------------------------  148 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA------------------------  148 (582)
T ss_dssp             EETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE------------------------
T ss_pred             EeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee------------------------
Confidence            432   2222 333222 34466889988765455555556669998765432211                        


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC----CcEE
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD----SRIR  329 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----~~i~  329 (441)
                                                                      .+..  .+++|||||++|++++.|    .+|+
T Consensus       149 ------------------------------------------------~~~~--~~~~~spDG~~la~~~~~~~~~~~i~  178 (582)
T 3o4h_A          149 ------------------------------------------------RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLF  178 (582)
T ss_dssp             ------------------------------------------------EESS--CEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred             ------------------------------------------------cCCC--ceEEECCCCCEEEEEEEcCCCCeEEE
Confidence                                                            1112  678999999999988887    7899


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-C--ceEEEEccCCceEeeecccccceEEEE--------
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T--AVKAFDIWSGKTCLTFRGHYEYVNCCC--------  398 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~wd~~~~~~~~~l~gh~~~v~~v~--------  398 (441)
                      +||+.+++...     +..........+++||+..++.... +  .+.+||+.+++.. .+.+|...+..++        
T Consensus       179 ~~d~~~g~~~~-----l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  252 (582)
T 3o4h_A          179 TSNLSSGGLRV-----FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG  252 (582)
T ss_dssp             EEETTTCCCEE-----ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred             EEcCCCCCceE-----eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence            99998876421     1222334467899999998885433 3  6899999998887 8889988888888        


Q ss_pred             EcCCCCeEEEeecCCcEEEeCC
Q 013545          399 FSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       399 fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      |||||+.+++++.|++++||++
T Consensus       253 ~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          253 YLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECTTSCEEEEEEETTEEEEEET
T ss_pred             EcCCCcEEEEEEcCCcEEEEEE
Confidence            9999988899999999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=3.1e-17  Score=157.73  Aligned_cols=286  Identities=12%  Similarity=0.055  Sum_probs=176.5

Q ss_pred             ecCCCCceeE-----EEccCCCCcEEEEeeC-CCc--EEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEE
Q 013545           39 VSPHKGSINS-----LQVDLTEERYLLSGAS-DSS--VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI  110 (441)
Q Consensus        39 ~~~H~~~V~~-----l~~s~~~~~~l~s~s~-Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  110 (441)
                      ++.|...+..     .+|+| ++++|+.++. ||.  |.+||+.+++..                 +...+|...+..+.
T Consensus        26 lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------~lt~~~~~~~~~~~   87 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------QLTEGRGDNTFGGF   87 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEE-----------------ECCCSSCBCSSSCE
T ss_pred             ecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceE-----------------EeeeCCCCCccceE
Confidence            4566655555     78997 5778888887 774  777788765421                 11123444443456


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEee--ccCCCCccEEEE----------------------
Q 013545          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAM--SPLAASHMLIAA----------------------  165 (441)
Q Consensus       111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~las----------------------  165 (441)
                      |+| |++.|+.++.++.|.+||+.+++.......+.. .....+  +++.   .+++.                      
T Consensus        88 ~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg---~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A           88 LSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC---TKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             ECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS---SEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             EcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC---CeeccccccCcccccccccchhhhhhc
Confidence            766 899999999999999999999887665555433 222222  3332   23432                      


Q ss_pred             EeCCCcEEEEECCCCceeeeecCCCCCeEEEEEec-CCCcEEEEeecC------CcEEEEEcCCCceeeEeccCCccccC
Q 013545          166 GTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCD------GAIRFWDIRRAGCFRVLDQSQSQLGR  238 (441)
Q Consensus       166 ~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp-~~~~~l~s~s~D------g~I~iWD~~~~~~~~~~~~~~~~~~~  238 (441)
                      ...+..|.+||+++++.. .+..+...+..+.|+| +++.+ +.++.+      ..|.++|+..+.. ..+         
T Consensus       164 ~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l-~~~~~~~~~~~~~~l~~~d~~~~~~-~~l---------  231 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTV-AFCHEGPHDLVDARMWLINEDGTNM-RKV---------  231 (388)
T ss_dssp             GCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEE-EEEECSCTTTSSCSEEEEETTSCCC-EES---------
T ss_pred             cCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEE-EEEEecCCCCCcceEEEEeCCCCce-EEe---------
Confidence            223467999999998754 4445677889999999 88754 444432      2566666543210 000         


Q ss_pred             CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec--cCeEEEEEccCC
Q 013545          239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKVTEDG  316 (441)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~dg  316 (441)
                                                                                    ..+.  ..+..++|+|||
T Consensus       232 --------------------------------------------------------------~~~~~~~~~~~~~~spdg  249 (388)
T 3pe7_A          232 --------------------------------------------------------------KTHAEGESCTHEFWVPDG  249 (388)
T ss_dssp             --------------------------------------------------------------CCCCTTEEEEEEEECTTS
T ss_pred             --------------------------------------------------------------eeCCCCcccccceECCCC
Confidence                                                                          0011  236678899999


Q ss_pred             CEEEEeecC-----CcEEEeeCCCCCceee-eeeeEEeccCcceEEEeeCCCcEEEEe----------CCCceEEEEccC
Q 013545          317 MYLLSAGSD-----SRIRLWDVESGRNTLV-NFETVRLQTSKPIQLATTQDPAVVFVP----------CMTAVKAFDIWS  380 (441)
Q Consensus       317 ~~l~sgs~D-----~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~wd~~~  380 (441)
                      +.|+..+.+     .+|++||+.+++.... .+.........+....++||+..++..          ....+.+||+.+
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred             CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence            987654432     2399999998864221 111000000001112567787765542          234789999988


Q ss_pred             CceEeeeccccc-----------ceEEEEEcCCCCeEEEee-cCCcEEEeCCC
Q 013545          381 GKTCLTFRGHYE-----------YVNCCCFSSQDQELYTGG-NDRQILVWCPS  421 (441)
Q Consensus       381 ~~~~~~l~gh~~-----------~v~~v~fspd~~~l~s~s-~D~~i~vW~~~  421 (441)
                      ++. ..+..|..           .+.+++|||||++|+.++ .++...||.++
T Consensus       330 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          330 GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            764 55666666           588999999999988655 57888888654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.78  E-value=1.3e-16  Score=149.79  Aligned_cols=252  Identities=10%  Similarity=0.001  Sum_probs=169.5

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe-
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS-  123 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs-  123 (441)
                      .+..++|+|++..++++++.++.|.+||+.+++...          .+..  .....|...+..+.+++ +++++++++ 
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~s~-dg~~l~~~~~  101 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG----------RIDL--STPEERVKSLFGAALSP-DGKTLAIYES  101 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE----------EEEC--CBTTEEEECTTCEEECT-TSSEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe----------eEEc--CCcccccccccceEECC-CCCEEEEEec
Confidence            488999997533456777888999999997654210          0100  00001223455677776 788888876 


Q ss_pred             -----------CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC
Q 013545          124 -----------YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (441)
Q Consensus       124 -----------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~  192 (441)
                                 .|+.|.+||+.+++.+..+.....+..+.+++++.   .|+++  ++.|.+||+++++....+..+...
T Consensus       102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~  176 (337)
T 1pby_B          102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS---KLYGL--GRDLHVMDPEAGTLVEDKPIQSWE  176 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS---CEEEE--SSSEEEEETTTTEEEEEECSTTTT
T ss_pred             ccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC---EEEEe--CCeEEEEECCCCcEeeeeeccccC
Confidence                       67999999999999888777666666777887643   34444  688999999999887776644311


Q ss_pred             eEEEEEecCCCcEEEEeecCCc-----------------------EEEEEcCCCceeeEeccCCccccCCCCcccccccc
Q 013545          193 IMTVEWSTSSEWILVTGGCDGA-----------------------IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLS  249 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~Dg~-----------------------I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (441)
                       ..+.|+|+++.+++++..++.                       |.+||+.+++.. .+                    
T Consensus       177 -~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~--------------------  234 (337)
T 1pby_B          177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR--------------------  234 (337)
T ss_dssp             -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE--------------------
T ss_pred             -CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee--------------------
Confidence             123789998866555444443                       345555433211 00                    


Q ss_pred             cCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545          250 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR  329 (441)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  329 (441)
                                                                       ....+...+.+++|+|||++|+++  +++|+
T Consensus       235 -------------------------------------------------~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~  263 (337)
T 1pby_B          235 -------------------------------------------------EVRIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             -------------------------------------------------EEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             -------------------------------------------------ecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence                                                             011233457789999999999888  79999


Q ss_pred             EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccccc
Q 013545          330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE  392 (441)
Q Consensus       330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~  392 (441)
                      +||+.+++..    .... ....+..+++++++..+++++. ..+.+||+.+++.+..+..+..
T Consensus       264 ~~d~~~~~~~----~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~  322 (337)
T 1pby_B          264 SFDLEKNASI----KRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             EEETTTTEEE----EEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred             EEECCCCcCc----ceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence            9999876532    1111 2345677899999998777654 6899999999998888766544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=2.4e-18  Score=179.39  Aligned_cols=317  Identities=12%  Similarity=0.060  Sum_probs=180.1

Q ss_pred             EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc---ceeEEEEeeCCCCEEEEEeC
Q 013545           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~l~sgs~  124 (441)
                      +++|+| +++++++ +.|++|++||+.++...            ...     .+|..   .|.++.|+| ||++|++++.
T Consensus        20 ~~~~s~-dg~~~~~-~~d~~i~~~~~~~g~~~------------~~~-----~~~~~~~~~~~~~~~Sp-Dg~~la~~~~   79 (719)
T 1z68_A           20 FPNWIS-GQEYLHQ-SADNNIVLYNIETGQSY------------TIL-----SNRTMKSVNASNYGLSP-DRQFVYLESD   79 (719)
T ss_dssp             CCEESS-SSEEEEE-CTTSCEEEEESSSCCEE------------EEE-----CHHHHHTTTCSEEEECT-TSSEEEEEEE
T ss_pred             ccEECC-CCeEEEE-cCCCCEEEEEcCCCcEE------------EEE-----ccccccccceeeEEECC-CCCeEEEEec
Confidence            678987 4665555 46999999999876421            011     12322   377888887 8999998877


Q ss_pred             ---------CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCCCCe-
Q 013545          125 ---------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDGI-  193 (441)
Q Consensus       125 ---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~~~v-  193 (441)
                               |++|++||+.+++.+....+...+..+.++|++.   .||.+. ++.|++||+.+++..+.. .++...| 
T Consensus        80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~---~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~  155 (719)
T 1z68_A           80 YSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGS---KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIF  155 (719)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTT---CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEE
T ss_pred             CceeEEeecceEEEEEECCCCccccceecCcccccceECCCCC---EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeE
Confidence                     7999999999988632123345577788998754   566664 789999999988765432 3443322 


Q ss_pred             ----------------EEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          194 ----------------MTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       194 ----------------~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                                      .+++|+|||+. |++++.| +.+++|.+.....     ...       +.........      
T Consensus       156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~-----~~~-------~~~~~~~yp~------  216 (719)
T 1z68_A          156 NGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGD-----EQY-------PRTINIPYPK------  216 (719)
T ss_dssp             ESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCS-----SSS-------CEEEEEECCB------
T ss_pred             cccccceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCC-----CCC-------ccceeecCCC------
Confidence                            48999999986 4565544 5666664421100     000       0000000000      


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC----CcEEEee
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD----SRIRLWD  332 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----~~i~~wd  332 (441)
                         ...     .+.......+.+. .+.......   +.....+.+|...+.+++||||++.+++....    ..|.+||
T Consensus       217 ---~g~-----~~~~~~l~~~d~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          217 ---AGA-----KNPVVRIFIIDTT-YPAYVGPQE---VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             ---TTS-----CCCEEEEEEEESS-CHHHHCCEE---CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             ---CCC-----CCCeeEEEEEECC-CCCccceeE---ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence               000     0000000000000 000000000   00000123466778999999998877764433    2488899


Q ss_pred             ----CCCCCceeeeeeeE-EeccCcce-----EEEeeCCCcEEEEe-C--C--CceEEEEccCCceEeeecccccceEEE
Q 013545          333 ----VESGRNTLVNFETV-RLQTSKPI-----QLATTQDPAVVFVP-C--M--TAVKAFDIWSGKTCLTFRGHYEYVNCC  397 (441)
Q Consensus       333 ----~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~-~--~--~~~~~wd~~~~~~~~~l~gh~~~v~~v  397 (441)
                          +.+++.... .... ........     ...+++|+..++.. .  .  ..+.+|++.+++ ...+..+...+..+
T Consensus       285 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~  362 (719)
T 1z68_A          285 FREDWQTWDCPKT-QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINI  362 (719)
T ss_dssp             ECSSSSSEECCGG-GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEE
T ss_pred             ccCCCCCCceEEE-EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEE
Confidence                766542211 1000 11111111     46788998865442 2  2  257777776666 56677777778888


Q ss_pred             EEcCCCCeEEEeecC-----CcEEEeCCCC
Q 013545          398 CFSSQDQELYTGGND-----RQILVWCPSR  422 (441)
Q Consensus       398 ~fspd~~~l~s~s~D-----~~i~vW~~~~  422 (441)
                      .++ |++.|+..+.+     +.+++|.++.
T Consensus       363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            888 88887765554     8899997754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=1.3e-16  Score=152.49  Aligned_cols=249  Identities=9%  Similarity=0.054  Sum_probs=162.5

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECC-CCeEEEEEec--CCeeEEEeeccCCCCcc-EEEEEe-------------
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTN-CTRVVMNFKM--PGKVYRTAMSPLAASHM-LIAAGT-------------  167 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~las~s-------------  167 (441)
                      .+..++++| ++++|++++.+ +|.+||+. +++.......  .+....+.++|++  .. +++++.             
T Consensus        41 ~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           41 PISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNT--RAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCC--EEEEEEECSSTTCCEEEEEESS
T ss_pred             CCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCC--CEEEEEEecCCcceeccceeec
Confidence            455677776 78889999888 99999997 7776543332  2333334555543  22 344553             


Q ss_pred             CCCcEEEEECC-CCceeeeec----CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC-CCceeeEeccCCccccCCCC
Q 013545          168 EDVQVRLCDIA-SGAISQTLS----GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRPP  241 (441)
Q Consensus       168 ~d~~I~vwdl~-~~~~~~~l~----~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~-~~~~~~~~~~~~~~~~~~~~  241 (441)
                      .++.+.+|++. +++....+.    .+...+.+++|+|++++++++...++.|++||+. +++......           
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-----------  185 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-----------  185 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-----------
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-----------
Confidence            68899999997 466544443    3566789999999998655444457899999987 443211000           


Q ss_pred             cccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE
Q 013545          242 LLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS  321 (441)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  321 (441)
                                                                     +         ....|...+..++|+|||++|++
T Consensus       186 -----------------------------------------------~---------~~~~~g~~p~~~~~spdg~~l~v  209 (365)
T 1jof_A          186 -----------------------------------------------V---------DAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             -----------------------------------------------E---------ECSSTTCCEEEEEECTTSSEEEE
T ss_pred             -----------------------------------------------E---------ecCCCCCCCCEeEECCCCCEEEE
Confidence                                                           0         00011234788999999999877


Q ss_pred             eec-CCcEEEeeCC--CCCcee--eeeeeEEec---cC-------cceEEE-eeCCCcEEEEeCC--C-----ceEEEEc
Q 013545          322 AGS-DSRIRLWDVE--SGRNTL--VNFETVRLQ---TS-------KPIQLA-TTQDPAVVFVPCM--T-----AVKAFDI  378 (441)
Q Consensus       322 gs~-D~~i~~wd~~--~~~~~~--~~~~~~~~~---~~-------~~~~~~-~~~~~~~~~~~~~--~-----~~~~wd~  378 (441)
                      ++. +++|.+|++.  +++...  ..+......   ..       .+..++ +++|+..++++..  .     .+.+|++
T Consensus       210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence            764 7899999875  343211  011111000   01       355688 9999998876543  3     7999999


Q ss_pred             c-CCceEe---eecccccceEEEEEcC---CCCeEEEeecC-CcEEEeCCCCCC
Q 013545          379 W-SGKTCL---TFRGHYEYVNCCCFSS---QDQELYTGGND-RQILVWCPSRHI  424 (441)
Q Consensus       379 ~-~~~~~~---~l~gh~~~v~~v~fsp---d~~~l~s~s~D-~~i~vW~~~~~~  424 (441)
                      . +++...   .+..+...+..++|+|   ||++|++++.+ ++|++|+++...
T Consensus       290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            6 666543   2334555678899999   89999988765 899999887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=8.5e-16  Score=146.36  Aligned_cols=271  Identities=11%  Similarity=0.127  Sum_probs=168.4

Q ss_pred             CCCceeEEEccCCCCcEEEEeeCC----CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           42 HKGSINSLQVDLTEERYLLSGASD----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      |......++|+| ++++|++++.+    +.|++|++.....     .+.   .+...     ..+......+.+   ++.
T Consensus        48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g-----~~~---~~~~~-----~~~~~~p~~~~~---dg~  110 (361)
T 3scy_A           48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKG-----TLH---LLNTQ-----KTMGADPCYLTT---NGK  110 (361)
T ss_dssp             ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTT-----EEE---EEEEE-----ECSSSCEEEEEE---CSS
T ss_pred             cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCC-----cEE---EeeEe-----ccCCCCcEEEEE---CCC
Confidence            567778899997 57889888886    7999999864210     000   00000     112223444444   577


Q ss_pred             EEEEEe-CCCcEEEEECCCCeEE----EEEecC-----------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545          118 LFVTGS-YDHYVKVWDTNCTRVV----MNFKMP-----------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (441)
Q Consensus       118 ~l~sgs-~D~~i~iWd~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~  181 (441)
                      ++++++ .+++|.+|++.....+    ......           ..+..+.++|++.  .+++++..++.|++|++....
T Consensus       111 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~  188 (361)
T 3scy_A          111 NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNA  188 (361)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTC
T ss_pred             EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCC
Confidence            776665 6889999998643322    111211           1235678887642  455666668899999887543


Q ss_pred             -------ee------eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545          182 -------IS------QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL  248 (441)
Q Consensus       182 -------~~------~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (441)
                             +.      .....+...+..++|+|+++++++++..++.|++||+.++.........                
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~----------------  252 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA----------------  252 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE----------------
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe----------------
Confidence                   21      1122345567899999999876665557899999998754321110000                


Q ss_pred             ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec--CC
Q 013545          249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS--DS  326 (441)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--D~  326 (441)
                                                                        ....+...+..++|+|||++|+++..  ++
T Consensus       253 --------------------------------------------------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          253 --------------------------------------------------ADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             --------------------------------------------------SCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             --------------------------------------------------cCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence                                                              00012233578999999998866555  48


Q ss_pred             cEEEeeCC--CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc--cCCceEeee-cccccceEEEEE
Q 013545          327 RIRLWDVE--SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKTCLTF-RGHYEYVNCCCF  399 (441)
Q Consensus       327 ~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~~~~l-~gh~~~v~~v~f  399 (441)
                      +|.+|++.  +++.  ........ ...+..+++++++..+++++.  ..+.+|++  .++++.... ..+...+.||+|
T Consensus       283 ~i~v~~~~~~~g~~--~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~  359 (361)
T 3scy_A          283 GVAIFKVDETNGTL--TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF  359 (361)
T ss_dssp             EEEEEEECTTTCCE--EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred             EEEEEEEcCCCCcE--EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence            99999996  3332  11222222 345678899999998887753  57888654  567665543 335567899998


Q ss_pred             c
Q 013545          400 S  400 (441)
Q Consensus       400 s  400 (441)
                      .
T Consensus       360 ~  360 (361)
T 3scy_A          360 V  360 (361)
T ss_dssp             E
T ss_pred             c
Confidence            6

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=1.5e-17  Score=173.41  Aligned_cols=290  Identities=10%  Similarity=0.059  Sum_probs=178.6

Q ss_pred             eeeecCCCC---ceeEEEccCCCCcEEEEeeC---------CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc
Q 013545           36 KEIVSPHKG---SINSLQVDLTEERYLLSGAS---------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK  103 (441)
Q Consensus        36 ~~~~~~H~~---~V~~l~~s~~~~~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  103 (441)
                      ..++.+|..   .|.+++||| ++++|++++.         |++|++||+.+++....       .           ...
T Consensus        49 ~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-------~-----------~l~  109 (719)
T 1z68_A           49 YTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-------N-----------ELP  109 (719)
T ss_dssp             EEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------S-----------CCC
T ss_pred             EEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------e-----------ecC
Confidence            334444443   499999997 6888998887         79999999987643100       0           001


Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe---e-----------------EEEeeccCCCCccEE
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---V-----------------YRTAMSPLAASHMLI  163 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~l  163 (441)
                      ..+..+.|+| ||+.||.++ |++|++||+.+++... +...+.   +                 ..+.|+|++.   .|
T Consensus       110 ~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~-l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~---~l  183 (719)
T 1z68_A          110 RPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQ-ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK---FL  183 (719)
T ss_dssp             SSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEE-CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS---EE
T ss_pred             cccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEE-EecCCCcCCeEcccccceeeeecccCcccEEECCCCC---EE
Confidence            2466778887 888999886 7899999998877643 221111   1                 3677888653   56


Q ss_pred             EEEeCCC----------------------------------cEEEEECCCCcee--------eeecCCCCCeEEEEEecC
Q 013545          164 AAGTEDV----------------------------------QVRLCDIASGAIS--------QTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       164 as~s~d~----------------------------------~I~vwdl~~~~~~--------~~l~~h~~~v~~v~fsp~  201 (441)
                      ++++.|.                                  .|++||+++++..        ..+.+|...+.+++|+|+
T Consensus       184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD  263 (719)
T 1z68_A          184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD  263 (719)
T ss_dssp             EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS
T ss_pred             EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC
Confidence            6665442                                  7889999988753        234578889999999999


Q ss_pred             CCcEEEEeecCC----cEEEEE----cCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          202 SEWILVTGGCDG----AIRFWD----IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       202 ~~~~l~s~s~Dg----~I~iWD----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      ++ ++++....+    .|.+||    +.++++..++..                                          
T Consensus       264 ~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~------------------------------------------  300 (719)
T 1z68_A          264 ER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH------------------------------------------  300 (719)
T ss_dssp             SE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE------------------------------------------
T ss_pred             Ce-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEec------------------------------------------
Confidence            75 566644322    488888    654432111100                                          


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeE-----EEEEccCCCEEE--EeecCC--cEEEeeCCCCCceeeeee
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVT-----GLKVTEDGMYLL--SAGSDS--RIRLWDVESGRNTLVNFE  344 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~l~~s~dg~~l~--sgs~D~--~i~~wd~~~~~~~~~~~~  344 (441)
                                               ....|.+.+.     .++|+|||+.|+  +...++  .|.+||+.+++...  + 
T Consensus       301 -------------------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~--l-  352 (719)
T 1z68_A          301 -------------------------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ--I-  352 (719)
T ss_dssp             -------------------------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE--C-
T ss_pred             -------------------------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe--c-
Confidence                                     0001222232     568999999654  344555  57777877654211  1 


Q ss_pred             eEEeccCcceEEEeeCCCcEE-EEeCC-----CceEEEEccC--Cc-eEeee----cccccceEEEEEcCCCCeEE-Eee
Q 013545          345 TVRLQTSKPIQLATTQDPAVV-FVPCM-----TAVKAFDIWS--GK-TCLTF----RGHYEYVNCCCFSSQDQELY-TGG  410 (441)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~wd~~~--~~-~~~~l----~gh~~~v~~v~fspd~~~l~-s~s  410 (441)
                        ...........+. ++..+ +....     ...++|.+..  +. ....+    .+|...+..+.||||+++|+ +++
T Consensus       353 --t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s  429 (719)
T 1z68_A          353 --TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCY  429 (719)
T ss_dssp             --SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEEC
T ss_pred             --ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcC
Confidence              1011112233344 55544 44443     4678888753  42 12333    34777889999999999877 454


Q ss_pred             cC--CcEEEeCCCCCC
Q 013545          411 ND--RQILVWCPSRHI  424 (441)
Q Consensus       411 ~D--~~i~vW~~~~~~  424 (441)
                      .+  ..+.+|++.++.
T Consensus       430 ~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          430 GPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             CBSSCEEEEECSSSCC
T ss_pred             CCCCCeEEEEECCCCC
Confidence            44  468899987775

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=4.8e-16  Score=147.17  Aligned_cols=260  Identities=14%  Similarity=0.182  Sum_probs=164.5

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeC---CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           41 PHKGSINSLQVDLTEERYLLSGAS---DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ++...+..++|+| +++ |++++.   ++.|++||+.++...          .+.     ....|...+..++++| +++
T Consensus        37 ~~~~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~----------~~~-----~~~~~~~~p~~~a~sp-dg~   98 (347)
T 3hfq_A           37 AATQNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAH----------KLN-----TVVAPGTPPAYVAVDE-ARQ   98 (347)
T ss_dssp             EECSCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEE----------EEE-----EEEEESCCCSEEEEET-TTT
T ss_pred             eccCCcceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEE----------Eee-----eeecCCCCCEEEEECC-CCC
Confidence            4556788899997 566 554444   689999999654310          000     0113445566788876 788


Q ss_pred             EEEEEe-CCCcEEEEECC-CCe--EEEEEecCC----------eeEEEeeccCCCCccEEEEEeCCCcEEEEECC-CCce
Q 013545          118 LFVTGS-YDHYVKVWDTN-CTR--VVMNFKMPG----------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAI  182 (441)
Q Consensus       118 ~l~sgs-~D~~i~iWd~~-~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-~~~~  182 (441)
                      +|++++ .+++|++||+. ++.  .+..+...+          .+..+.++|++.   ++++...++.|++|++. +++.
T Consensus        99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~---l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A           99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR---LAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC---EEEEETTTTEEEEEEECTTSCE
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc---EEEEeCCCCEEEEEEECCCCcE
Confidence            888887 78999999985 333  333333321          256678888643   77777778899999998 5543


Q ss_pred             ee--eecCC-CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          183 SQ--TLSGH-RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       183 ~~--~l~~h-~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      ..  .+..+ ...+..++|+|+++++++++..++.|++||+... ..+..+.....                        
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~------------------------  231 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT------------------------  231 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES------------------------
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee------------------------
Confidence            32  22222 3367889999999877777778899999998741 11111000000                        


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCC
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~  337 (441)
                                                     .+.       .......+..++|+|||++| ++...+++|.+|++....
T Consensus       232 -------------------------------~~~-------~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g  273 (347)
T 3hfq_A          232 -------------------------------IPA-------DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG  273 (347)
T ss_dssp             -------------------------------SCT-------TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred             -------------------------------cCC-------CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence                                           000       00001247789999999977 666779999999997321


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc--cCCceE
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKTC  384 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~~  384 (441)
                       ..............+..+++++++..++++..  ..+.+|++  .++++.
T Consensus       274 -~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          274 -HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             -CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             -cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence             11222222222345678899999998877653  57999955  556544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=3.8e-16  Score=163.31  Aligned_cols=291  Identities=11%  Similarity=0.130  Sum_probs=183.9

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ....+++|+| ++++|+++  ||+|++||+.++...            ..+.......+........++| |+++|+.++
T Consensus        17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~   80 (740)
T 4a5s_A           17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSS------------VFLENSTFDEFGHSINDYSISP-DGQFILLEY   80 (740)
T ss_dssp             CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEE------------EEECTTTTTTCCSCCCEEEECT-TSSEEEEEE
T ss_pred             ccccccEECC-CCcEEEEc--CCcEEEEECCCCceE------------EEEechhhhhhcccccceEECC-CCCEEEEEE
Confidence            4467899996 57888886  999999999876531            1111111112222233466676 899999998


Q ss_pred             CC---------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCe
Q 013545          124 YD---------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGI  193 (441)
Q Consensus       124 ~D---------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v  193 (441)
                      .+         +.+.+||+.+++........+.+....|+|++.   .||.+ .++.|++||+.+++..+ +..++...+
T Consensus        81 ~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~---~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~  156 (740)
T 4a5s_A           81 NYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (740)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             CCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCC---EEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence            87         455699999998654333456688889999764   46665 46899999999887544 233443333


Q ss_pred             -----------------EEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545          194 -----------------MTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS  255 (441)
Q Consensus       194 -----------------~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (441)
                                       .++.|||||+.+ |..+.| +.+++|++......                             
T Consensus       157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~l-a~~~~d~~~v~~~~~~~~~~~-----------------------------  206 (740)
T 4a5s_A          157 YNGITDWVYEEEVFSAYSALWWSPNGTFL-AYAQFNDTEVPLIEYSFYSDE-----------------------------  206 (740)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEE-EEEEEECTTCCEEEEEECCST-----------------------------
T ss_pred             ecCcccccccchhcCCCcceEECCCCCEE-EEEEEcccCCceEEEEeecCC-----------------------------
Confidence                             358999999964 555544 55999986421000                             


Q ss_pred             cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545          256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  335 (441)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~  335 (441)
                                                                   ..+...+..+.+.+.|..    ....+|++||+.+
T Consensus       207 ---------------------------------------------~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~  237 (740)
T 4a5s_A          207 ---------------------------------------------SLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDS  237 (740)
T ss_dssp             ---------------------------------------------TCSSCEEEEEECCBTTSC----CCEEEEEEEETTS
T ss_pred             ---------------------------------------------CCCCCcceeecCCCCcCc----CCeeEEEEEECCC
Confidence                                                         011223455666666533    2233789999998


Q ss_pred             ---CCc-eeeeeeeEE---eccCcceEEEeeCCCcEEEEeCC-----CceEEEEccCCc----eEe--ee--cccccceE
Q 013545          336 ---GRN-TLVNFETVR---LQTSKPIQLATTQDPAVVFVPCM-----TAVKAFDIWSGK----TCL--TF--RGHYEYVN  395 (441)
Q Consensus       336 ---~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~wd~~~~~----~~~--~l--~gh~~~v~  395 (441)
                         ++. ....+....   ........++++||+..++....     ..+.+||+.+++    +..  ++  .+|..+|.
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~  317 (740)
T 4a5s_A          238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG  317 (740)
T ss_dssp             CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred             CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence               631 011110000   01222446788999986554321     268999999987    322  22  56777776


Q ss_pred             -----EEEEcCCCCeEE-EeecC---CcEEEeCCCCCCCCCccCCcc
Q 013545          396 -----CCCFSSQDQELY-TGGND---RQILVWCPSRHISDGVDAGPM  433 (441)
Q Consensus       396 -----~v~fspd~~~l~-s~s~D---~~i~vW~~~~~~~~~~~~~~~  433 (441)
                           .++|||||+.|+ ..+++   ..|.+|+..++....+..|..
T Consensus       318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~  364 (740)
T 4a5s_A          318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTW  364 (740)
T ss_dssp             SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSS
T ss_pred             cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCE
Confidence                 789999999887 66643   468889998888777776643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=1.5e-15  Score=143.23  Aligned_cols=301  Identities=12%  Similarity=0.091  Sum_probs=170.5

Q ss_pred             EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE-EEEEeCCC
Q 013545           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL-FVTGSYDH  126 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~-l~sgs~D~  126 (441)
                      .++++ .+++++++++.|++|++||+.+++...          .+..      +....+..+.+++ ++++ ++++..++
T Consensus         4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~----------~~~~------~~~~~~~~~~~s~-dg~~~~v~~~~~~   65 (349)
T 1jmx_B            4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYK----------SCVM------PDKFGPGTAMMAP-DNRTAYVLNNHYG   65 (349)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEE----------EEEC------SSCCSSCEEEECT-TSSEEEEEETTTT
T ss_pred             ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEE----------EEec------CCCCCCceeEECC-CCCEEEEEeCCCC
Confidence            34566 457789999999999999998654210          0100      1112355677776 6665 45666789


Q ss_pred             cEEEEECCCCeEEEEEecCCe-------eEEEeeccCCCCccEEEEEeCC------------CcEEEEECCCCcee---e
Q 013545          127 YVKVWDTNCTRVVMNFKMPGK-------VYRTAMSPLAASHMLIAAGTED------------VQVRLCDIASGAIS---Q  184 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~las~s~d------------~~I~vwdl~~~~~~---~  184 (441)
                      +|.+||+.+++.+..+.....       +..+.+++++   ..|++++.+            +.|.+||+++++..   .
T Consensus        66 ~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           66 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG---KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             cEEEEeCCCCcEEEEEEcccccccccccccceEECCCC---CEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence            999999999998877765331       4566777754   356655544            89999999986543   3


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR  264 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (441)
                      .+. +...+.+++|+|+++ +++ +  ++.|.+||+.+++....+.......   + ..    .................
T Consensus       143 ~~~-~~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~~~~~~~~~  209 (349)
T 1jmx_B          143 TFP-MPRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKYTVALPLRNWNR---K-GY----SAPDVLYFWPHQSPRHE  209 (349)
T ss_dssp             EEE-CCSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCEEEEECSTTCCC---T-TB----CCCBCCCCCCCCCTTCE
T ss_pred             ecc-CCCcccceeECCCCc-EEE-c--cCcEEEEeCCCCceeccccccccCC---c-cc----cCccceeeecCCCccee
Confidence            333 344688999999998 655 3  3459999998887665543211000   0 00    00000000000000000


Q ss_pred             cCCCCCccccCccccc-CCCCcc-----cccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCC
Q 013545          265 SANGNGVRQSSVGRIP-AKGSVR-----QRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       265 ~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                      ......+...+++... ......     .....+..... ....+...+.+++|+| ||++++++  +++|.+||+.+++
T Consensus       210 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~  286 (349)
T 1jmx_B          210 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ-EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK  286 (349)
T ss_dssp             EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE-EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred             EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec-ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence            0000000111000000 000000     00000000000 0112334678899999 99999888  8899999998865


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH  390 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh  390 (441)
                      ..    .... ....+..+++++++..+++.+. ..+.+||..+++.+..+..+
T Consensus       287 ~~----~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          287 LI----KAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EE----EEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EE----EEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            31    1111 1234667889999887777543 68999999999887776544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=2.9e-14  Score=131.11  Aligned_cols=251  Identities=8%  Similarity=0.157  Sum_probs=166.2

Q ss_pred             cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      .+|.....++++++ +++++++.+.++.|++||..... .      .    .+ .......+|...+..+++.+.++.++
T Consensus        26 ~g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~-~------~----~~-~~~~~~~~~~~~p~~i~~~~~~g~l~   92 (286)
T 1q7f_A           26 EGQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRF-K------F----QF-GECGKRDSQLLYPNRVAVVRNSGDII   92 (286)
T ss_dssp             TTCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCE-E------E----EE-CCBSSSTTCBSSEEEEEEETTTTEEE
T ss_pred             CCccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcE-E------E----Ee-cccCCCcccccCceEEEEEcCCCeEE
Confidence            35677899999986 57788888999999999976221 0      0    00 00011124455677777754466666


Q ss_pred             EEEeC-CCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec--CCCCCeE
Q 013545          120 VTGSY-DHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIM  194 (441)
Q Consensus       120 ~sgs~-D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~--~h~~~v~  194 (441)
                      ++... ++.|++|| .+++.+..+...  .....+++.+.+   .++++...++.|.+||.. ++.+..+.  ++...+.
T Consensus        93 v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A           93 VTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG---RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             EEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             EEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC---CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence            66543 89999999 566766666432  345667776643   366666678899999964 55555553  4556789


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      +++++|++. ++++.+.++.|++||.. ++.+..+..                                           
T Consensus       168 ~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~-------------------------------------------  202 (286)
T 1q7f_A          168 GVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGG-------------------------------------------  202 (286)
T ss_dssp             EEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESC-------------------------------------------
T ss_pred             EEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEcc-------------------------------------------
Confidence            999999986 67777788999999964 222211100                                           


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC-cEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-RIRLWDVESGRNTLVNFETVRLQTSKP  353 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-~i~~wd~~~~~~~~~~~~~~~~~~~~~  353 (441)
                                                .++...+.+|+++|+|.++++...++ +|++||... +. .   .....     
T Consensus       203 --------------------------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~-~---~~~~~-----  246 (286)
T 1q7f_A          203 --------------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QL-I---SALES-----  246 (286)
T ss_dssp             --------------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CE-E---EEEEE-----
T ss_pred             --------------------------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CE-E---EEEcc-----
Confidence                                      01113467899999999999888886 999998542 21 0   00000     


Q ss_pred             eEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          354 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                                                        ......+.+++|+|||+++++ +.|++|++|+.....
T Consensus       247 ----------------------------------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          247 ----------------------------------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             ----------------------------------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             ----------------------------------cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence                                              011223678999999988777 579999999876543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=3.7e-15  Score=142.15  Aligned_cols=264  Identities=13%  Similarity=0.063  Sum_probs=175.1

Q ss_pred             CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe----------CCCcEEEEEC
Q 013545           64 SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS----------YDHYVKVWDT  133 (441)
Q Consensus        64 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs----------~D~~i~iWd~  133 (441)
                      .|++|.+||..+++..            ..+     ..+..+  .++++| |+++++.+.          .|++|.+||+
T Consensus        29 ~d~~v~v~D~~t~~~~------------~~i-----~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFL------------GMV-----PTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGCEEEEEETTTCCEE------------EEE-----ECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             ccCeEEEEECCCCeEE------------EEe-----cCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            5789999998766421            001     112223  566766 788888776          3678999999


Q ss_pred             CCCeEEEEEecC-------CeeEEEeeccCCCCccEEEEEe-C-CCcEEEEECCCCceeee-ecCCCCCeEEEEEecCCC
Q 013545          134 NCTRVVMNFKMP-------GKVYRTAMSPLAASHMLIAAGT-E-DVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       134 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~las~s-~-d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~fsp~~~  203 (441)
                      .+.+.+..+...       .....+.+++++.   .|+++. . ++.|.+||+++++.+.. +...  ....+.+.|+++
T Consensus        89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~---~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~  163 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK---FIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRP  163 (361)
T ss_dssp             TTCCEEEEEEECTTBCCBCCCGGGEEECTTSS---EEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSS
T ss_pred             cCCcEEEEEEcCccccccCCCcceEEECCCCC---EEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCC
Confidence            999988877653       1234566777643   454443 3 68999999999988877 5422  223467788876


Q ss_pred             cEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545          204 WILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  282 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (441)
                      ..+++.+.||++.+|++.. ++.......  ...                                              
T Consensus       164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~~~----------------------------------------------  195 (361)
T 2oiz_A          164 RSFMTICGDGGLLTINLGEDGKVASQSRS--KQM----------------------------------------------  195 (361)
T ss_dssp             SEEEEEETTSSEEEEEECTTSSEEEEEEC--CCC----------------------------------------------
T ss_pred             eeEEEECCCCcEEEEEECCCCcEeeeccc--cce----------------------------------------------
Confidence            6778899999999999864 322111000  000                                              


Q ss_pred             CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe----------ccCc
Q 013545          283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL----------QTSK  352 (441)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~----------~~~~  352 (441)
                            +           ..+..++ .+.+++++..++..+.+++|.++|+........  .....          ....
T Consensus       196 ------~-----------~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~g  255 (361)
T 2oiz_A          196 ------F-----------SVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD--GPWSLLNDEDKAKNWVPGG  255 (361)
T ss_dssp             ------S-----------CTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE--EEEESCCHHHHHTTCEECC
T ss_pred             ------E-----------cCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceec--ccccccCccccccccccCC
Confidence                  0           0000111 122356777777677888999999876543221  11110          0122


Q ss_pred             ceEEEeeCCCcEEEEeC------------CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          353 PIQLATTQDPAVVFVPC------------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~------------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ...+++++++..+++..            ...+.+||..+++.+.++..|.  +.+++|+|||++|++++. ++|.+||.
T Consensus       256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            22367889988877753            2368999999999999999887  999999999999998886 99999999


Q ss_pred             CCC
Q 013545          421 SRH  423 (441)
Q Consensus       421 ~~~  423 (441)
                      .++
T Consensus       333 ~t~  335 (361)
T 2oiz_A          333 SQP  335 (361)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.2e-13  Score=129.92  Aligned_cols=250  Identities=12%  Similarity=0.090  Sum_probs=171.1

Q ss_pred             cceeEEEEeeCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEEecC--CeeEEEeeccCC
Q 013545          104 YAISSAIWYPVDTGLFVTGSYD------------------------HYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLA  157 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D------------------------~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~  157 (441)
                      +.+.++++.+ ++.++++.+.+                        ++|.+||..+++.+..+...  .....+++.+.+
T Consensus        24 ~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           24 GQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             SCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             CCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4577788876 68888888877                        47999999989887655422  235567777643


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCc-eeeee---------cCCCCCeEEEEEec-CCCcEEEEee-cCCcEEEEEcCCCce
Q 013545          158 ASHMLIAAGTEDVQVRLCDIASGA-ISQTL---------SGHRDGIMTVEWST-SSEWILVTGG-CDGAIRFWDIRRAGC  225 (441)
Q Consensus       158 ~~~~~las~s~d~~I~vwdl~~~~-~~~~l---------~~h~~~v~~v~fsp-~~~~~l~s~s-~Dg~I~iWD~~~~~~  225 (441)
                         .++++...++.|++||.+... .+..+         .++......++|+| ++. ++++.+ .++.|++|| ..+..
T Consensus       103 ---~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g~~  177 (329)
T 3fvz_A          103 ---NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSGKF  177 (329)
T ss_dssp             ---CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC-TTSCE
T ss_pred             ---CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCCCE
Confidence               377777888999999986553 44444         35556789999999 565 677776 689999999 44443


Q ss_pred             eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeecc
Q 013545          226 FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG  305 (441)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  305 (441)
                      +..+.....                                                +.             ....++..
T Consensus       178 ~~~~~~~g~------------------------------------------------~~-------------~~~~~~~~  196 (329)
T 3fvz_A          178 VTQWGEESS------------------------------------------------GS-------------SPRPGQFS  196 (329)
T ss_dssp             EEEECEECC------------------------------------------------SS-------------SCCTTEES
T ss_pred             EEEeccCCC------------------------------------------------CC-------------CCCCcccC
Confidence            333211000                                                00             00012334


Q ss_pred             CeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC--------CCceEEE
Q 013545          306 AVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--------MTAVKAF  376 (441)
Q Consensus       306 ~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~w  376 (441)
                      .+.+|+++|+ +..+++...+++|++||..+++... .+.. ......+..+++.| +..+...+        ...+++|
T Consensus       197 ~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-~~~~-~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~  273 (329)
T 3fvz_A          197 VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-EIKH-ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVM  273 (329)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECC-TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEE
T ss_pred             CCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-EEec-cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEE
Confidence            5789999998 8888888999999999998665321 1100 01122344556666 32222221        1278999


Q ss_pred             EccCCceEeee---cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          377 DIWSGKTCLTF---RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       377 d~~~~~~~~~l---~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      +..+++.+..+   .+|...+..|+|+|||..+++...++.|++|++...
T Consensus       274 ~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          274 NFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             ETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            99999998887   478888999999999988889889999999998653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=1.1e-14  Score=139.92  Aligned_cols=273  Identities=8%  Similarity=-0.004  Sum_probs=166.4

Q ss_pred             ceeEEEccCCCCcEEEEeeCC-C--cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           45 SINSLQVDLTEERYLLSGASD-S--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~D-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      .+..++|+| ++++|+..+.+ +  .|.+||+.+++...             +    ..++......+.|+| |+++|+.
T Consensus        37 ~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------l----~~~~~~~~~~~~~sp-dg~~l~~   97 (396)
T 3c5m_A           37 YFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------L----TEGKGDNTFGGFIST-DERAFFY   97 (396)
T ss_dssp             CTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEE-------------C----CCSSCBCTTTCEECT-TSSEEEE
T ss_pred             eeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEE-------------e----ecCCCCccccceECC-CCCEEEE
Confidence            378889997 57777666443 3  67888887653210             0    011111122245665 8899999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCe-eEE---E----------------eeccCCCCccEEEEE-----eCCCcEEEEE
Q 013545          122 GSYDHYVKVWDTNCTRVVMNFKMPGK-VYR---T----------------AMSPLAASHMLIAAG-----TEDVQVRLCD  176 (441)
Q Consensus       122 gs~D~~i~iWd~~~~~~~~~~~~~~~-~~~---~----------------~~~~~~~~~~~las~-----s~d~~I~vwd  176 (441)
                      ++.++.|.+||+.+++.......+.. ...   +                .++|++   ..++..     ..+..|.+||
T Consensus        98 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg---~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A           98 VKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT---SWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC---SHHHHHHHHHTCCCEEEEEEE
T ss_pred             EEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC---cceeeeeeccCCCcceEEEEE
Confidence            99999999999998876554443221 111   1                223322   112211     3456899999


Q ss_pred             CCCCceeeeecCCCCCeEEEEEec-CCCcEEEEeecC------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccc
Q 013545          177 IASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCD------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLS  249 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp-~~~~~l~s~s~D------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (441)
                      +.+++..... .+...+..+.|+| +++.+ +..+.+      ..|.+||+..+.... +                    
T Consensus       175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l-~~~~~~~~~~~~~~l~~~d~~~~~~~~-l--------------------  231 (396)
T 3c5m_A          175 IETGELEVIH-QDTAWLGHPIYRPFDDSTV-GFCHEGPHDLVDARMWLVNEDGSNVRK-I--------------------  231 (396)
T ss_dssp             TTTCCEEEEE-EESSCEEEEEEETTEEEEE-EEEECSCSSSCSCCCEEEETTSCCCEE-S--------------------
T ss_pred             CCCCcEEeec-cCCcccccceECCCCCCEE-EEEecCCCCCCCceEEEEECCCCceeE-e--------------------
Confidence            9998765444 5677889999999 67644 333333      356667764321000 0                    


Q ss_pred             cCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee-ccCeEEEEEccCCCEEEEeecC---
Q 013545          250 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSD---  325 (441)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D---  325 (441)
                                                                        .... ...+..++|+|||++|+..+.+   
T Consensus       232 --------------------------------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (396)
T 3c5m_A          232 --------------------------------------------------KEHAEGESCTHEFWIPDGSAMAYVSYFKGQ  261 (396)
T ss_dssp             --------------------------------------------------SCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred             --------------------------------------------------eccCCCccccceEECCCCCEEEEEecCCCC
Confidence                                                              0000 1236778999999988777554   


Q ss_pred             --CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC-CCcEEEEeC-----------------CCceEEEEccCCceEe
Q 013545          326 --SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPC-----------------MTAVKAFDIWSGKTCL  385 (441)
Q Consensus       326 --~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------------~~~~~~wd~~~~~~~~  385 (441)
                        ++|++||+.+++....  ..  . ..  ....+++ ++..++...                 ...+.+||+.+++. .
T Consensus       262 ~~~~l~~~d~~~g~~~~l--~~--~-~~--~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~  333 (396)
T 3c5m_A          262 TDRVIYKANPETLENEEV--MV--M-PP--CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-Q  333 (396)
T ss_dssp             CCEEEEEECTTTCCEEEE--EE--C-CS--EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-C
T ss_pred             ccceEEEEECCCCCeEEe--ee--C-CC--CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-E
Confidence              4499999988753211  11  1 11  1267788 888776532                 25789999987764 4


Q ss_pred             eeccccc-----------ceEEEEEcCCCCeEEEeec-CCcEEEeCC
Q 013545          386 TFRGHYE-----------YVNCCCFSSQDQELYTGGN-DRQILVWCP  420 (441)
Q Consensus       386 ~l~gh~~-----------~v~~v~fspd~~~l~s~s~-D~~i~vW~~  420 (441)
                      .+..|..           .+..++|+|||++|+.++. ++...||.+
T Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          334 KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            5555654           2567899999999887664 566666644

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.64  E-value=6.6e-14  Score=133.64  Aligned_cols=257  Identities=11%  Similarity=0.068  Sum_probs=156.4

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECC-CCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE-
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ-RATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL-  118 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~-  118 (441)
                      ++...+..++|+| ++++|++++.+ +|.+||+. +++..          .+....   ..+   .+..+.++| ++++ 
T Consensus        37 ~~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~----------~~~~~~---~~g---~~~~~~~sp-dg~~l   97 (365)
T 1jof_A           37 PQDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIV----------HEASHP---IGG---HPRANDADT-NTRAI   97 (365)
T ss_dssp             CTTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEE----------EEEEEE---CCS---SGGGGCTTS-CCEEE
T ss_pred             CCCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEE----------EeeEee---cCC---CCccEEECC-CCCEE
Confidence            3445688999997 57889999888 99999986 43210          000000   001   122345555 6773 


Q ss_pred             -EEEEe-------------CCCcEEEEECC-CCeEEEEEe-----cCCeeEEEeeccCCCCccEEEEE-eCCCcEEEEEC
Q 013545          119 -FVTGS-------------YDHYVKVWDTN-CTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAG-TEDVQVRLCDI  177 (441)
Q Consensus       119 -l~sgs-------------~D~~i~iWd~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~las~-s~d~~I~vwdl  177 (441)
                       ++++.             .++++++|++. +++....+.     ....+..+.++|++.   .|+++ ..++.|++||+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~---~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A           98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET---YLYSADLTANKLWTHRK  174 (365)
T ss_dssp             EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS---EEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC---EEEEEcCCCCEEEEEEE
Confidence             45553             79999999997 465543333     234577888888653   34444 34679999999


Q ss_pred             C-CCcee--eeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC--CceeeEeccCCccccCCCCccccccccc
Q 013545          178 A-SGAIS--QTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR--AGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       178 ~-~~~~~--~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      + +++..  ..+.  .|...+..++|+|++++++++...+++|.+|++..  ++.......    +.         .+  
T Consensus       175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~----~~---------~~--  239 (365)
T 1jof_A          175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS----FP---------LI--  239 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----EE---------SS--
T ss_pred             CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce----EE---------cC--
Confidence            8 77653  2333  24567899999999986555444578999998752  321100000    00         00  


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeecc------CeEEEE-EccCCCEEEEee
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG------AVTGLK-VTEDGMYLLSAG  323 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~l~-~s~dg~~l~sgs  323 (441)
                                                              +      ....+|..      .+..++ |+|||++|++++
T Consensus       240 ----------------------------------------~------~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          240 ----------------------------------------P------PGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             ----------------------------------------C------TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ----------------------------------------C------CCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence                                                    0      00001111      477899 999999887665


Q ss_pred             cCC------cEEEeeCC-CCCceeeeeeeEEeccCcceEEEeeC---CCcEEEEeCC--CceEEEEccCC
Q 013545          324 SDS------RIRLWDVE-SGRNTLVNFETVRLQTSKPIQLATTQ---DPAVVFVPCM--TAVKAFDIWSG  381 (441)
Q Consensus       324 ~D~------~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~wd~~~~  381 (441)
                      .+.      +|++|++. +++.... ..........+..++++|   ++.++++++.  ..+++|++...
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~~~-~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIEKQ-LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEE-EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEe-eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            432      89999996 4442110 001111223455677888   7888888764  58999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=6.3e-14  Score=144.55  Aligned_cols=291  Identities=11%  Similarity=0.029  Sum_probs=176.7

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEe--eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccccee---------
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSG--ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS---------  107 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------  107 (441)
                      +.+|...|..+++++ +.-++++.  +.|+...||....+....                 ....|...+.         
T Consensus        19 ~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~l~~~~~~~~~~~~~~~~~   80 (662)
T 3azo_A           19 VASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEE-----------------SALPAPWNVRNRVFEYSGF   80 (662)
T ss_dssp             HHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEE-----------------ESSCTTCCBCCCGGGTCCC
T ss_pred             HhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcc-----------------eeCCCCccccccccccCCc
Confidence            457889999999995 45566777  668999999863221100                 0011222222         


Q ss_pred             EEEEe-eCCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEEec------CCeeEEEeeccCCCCccEEEEEeCC------
Q 013545          108 SAIWY-PVDTGL-FVTGSY-DHYVKVWDTN--C-TRVVMNFKM------PGKVYRTAMSPLAASHMLIAAGTED------  169 (441)
Q Consensus       108 ~~~~~-~~~~~~-l~sgs~-D~~i~iWd~~--~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~las~s~d------  169 (441)
                      ...++ ++|++. |+.++. +..|.+|++.  . +.. ..+..      ...+..+.++|++.   .|++++.+      
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~---~l~~~~~~~~~~~~  156 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERG---EVWCMAEEFTGEGP  156 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTT---EEEEEEEEECSSST
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCC---EEEEEEecccCCCC
Confidence            34455 257877 665544 5667777765  2 443 22222      23466788888653   56666655      


Q ss_pred             ----CcEEEEECCC------Cceeeeec-CCCCCeEEEEEecCCCcEEEEeecC--------CcEEEEEcC-CCc--eee
Q 013545          170 ----VQVRLCDIAS------GAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCD--------GAIRFWDIR-RAG--CFR  227 (441)
Q Consensus       170 ----~~I~vwdl~~------~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~D--------g~I~iWD~~-~~~--~~~  227 (441)
                          ..|++||+.+      ++. ..+. .+...+..++|+|||+++ +.++.+        ..|.+||+. ++.  ...
T Consensus       157 ~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~l-a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          157 SDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQA-VWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             TCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEE-EEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             CCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEE-EEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence                5899999988      554 4555 566778899999999864 555544        379999987 331  110


Q ss_pred             EeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCe
Q 013545          228 VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV  307 (441)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  307 (441)
                      .+                                                                      ...|...+
T Consensus       235 ~l----------------------------------------------------------------------~~~~~~~~  244 (662)
T 3azo_A          235 TL----------------------------------------------------------------------LGGPEEAI  244 (662)
T ss_dssp             EE----------------------------------------------------------------------EEETTBCE
T ss_pred             Ee----------------------------------------------------------------------CCCCCceE
Confidence            00                                                                      11234568


Q ss_pred             EEEEEccCCCEEEEeecCC--cEEEeeCCCCCceeeeeeeEEecc------CcceEEEeeCCCcEEEEeCCCceEEE--E
Q 013545          308 TGLKVTEDGMYLLSAGSDS--RIRLWDVESGRNTLVNFETVRLQT------SKPIQLATTQDPAVVFVPCMTAVKAF--D  377 (441)
Q Consensus       308 ~~l~~s~dg~~l~sgs~D~--~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~w--d  377 (441)
                      ..++|+|||+++++++.|+  +|.+||+.+++...  +.......      .....+++++++.++++......++|  |
T Consensus       245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~--l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  322 (662)
T 3azo_A          245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ--LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILD  322 (662)
T ss_dssp             EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE--SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEE
T ss_pred             cceEECCCCeEEEEECCCCCeEEEEEECCCCceee--cccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEE
Confidence            8899999999888888888  56666665554211  10000000      00234677788888777654667888  4


Q ss_pred             ccCCceEeeecccccceEEE-EEcCCCCeEEEeecCCcEEEe--CCCCCCCC
Q 013545          378 IWSGKTCLTFRGHYEYVNCC-CFSSQDQELYTGGNDRQILVW--CPSRHISD  426 (441)
Q Consensus       378 ~~~~~~~~~l~gh~~~v~~v-~fspd~~~l~s~s~D~~i~vW--~~~~~~~~  426 (441)
                      ..+++ +..+..|...+..+ +++++.-.+++++.+....||  ++.++...
T Consensus       323 ~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          323 PESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             TTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             CCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            44444 67888888888877 554443334456666554555  66566544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=4e-13  Score=126.23  Aligned_cols=278  Identities=10%  Similarity=0.061  Sum_probs=174.5

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ..|++|.|++ +...+++.+.+++++.|.....               ..     ..++...+.++.+.+ ++.+++++.
T Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~-~g~l~~~~~   63 (333)
T 2dg1_A            6 QDLPTLFYSG-KSNSAVPIISESELQTITAEPW---------------LE-----ISKKGLQLEGLNFDR-QGQLFLLDV   63 (333)
T ss_dssp             CCCCBCCSCG-GGGCSSCCCCGGGSCEEECEEE---------------EE-----EESSCCCEEEEEECT-TSCEEEEET
T ss_pred             cccceeeecC-CccceeEEeecccCccccccee---------------EE-----EeccCccccCcEECC-CCCEEEEEC
Confidence            4578899986 4556777788999999932210               00     112333456677765 777888888


Q ss_pred             CCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCC----CcEEEEECCCCceeeeec--CCCCCeEEE
Q 013545          124 YDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTED----VQVRLCDIASGAISQTLS--GHRDGIMTV  196 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d----~~I~vwdl~~~~~~~~l~--~h~~~v~~v  196 (441)
                      .++.|.+||..+++..... .....+..+.+.+++   .++++...+    +.|.+||.+++.....+.  .+...+..+
T Consensus        64 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i  140 (333)
T 2dg1_A           64 FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDM  140 (333)
T ss_dssp             TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEE
T ss_pred             CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC---cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccce
Confidence            9999999999888765443 234557777777653   356655555    589999998887543333  345678999


Q ss_pred             EEecCCCcEEEEeecC----CcEEEEEcC--CCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          197 EWSTSSEWILVTGGCD----GAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~D----g~I~iWD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      .++|++. ++++...+    +...||.+.  .+....                                           
T Consensus       141 ~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------------------------------  176 (333)
T 2dg1_A          141 VFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTP-------------------------------------------  176 (333)
T ss_dssp             EECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEE-------------------------------------------
T ss_pred             EECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEE-------------------------------------------
Confidence            9999986 55554421    233444332  211000                                           


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCC-CCceeeeee-eE-
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVES-GRNTLVNFE-TV-  346 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~-~~~~~~~~~-~~-  346 (441)
                                                   ...+...+..++|+|+|++| ++.+.+++|.+||+.+ +.. ...+. .. 
T Consensus       177 -----------------------------~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-~~~~~~~~~  226 (333)
T 2dg1_A          177 -----------------------------IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-IQPFGATIP  226 (333)
T ss_dssp             -----------------------------EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-EEEEEEEEE
T ss_pred             -----------------------------eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-cccccceEE
Confidence                                         00112346789999999855 5556788999999964 221 11111 00 


Q ss_pred             -Eec-cCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeeccccc------ceEEEEEcCCCCeEEEeecCC----
Q 013545          347 -RLQ-TSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYE------YVNCCCFSSQDQELYTGGNDR----  413 (441)
Q Consensus       347 -~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~------~v~~v~fspd~~~l~s~s~D~----  413 (441)
                       ... ...+..+++.+++.+.+... ...+.+||. +++.+..+..+..      .+.+++|+||++.|+.++.++    
T Consensus       227 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~  305 (333)
T 2dg1_A          227 YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGG  305 (333)
T ss_dssp             EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTC
T ss_pred             EecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCC
Confidence             111 12455678888888666553 467999998 5777766654443      689999999987776544442    


Q ss_pred             cEEEeCCC
Q 013545          414 QILVWCPS  421 (441)
Q Consensus       414 ~i~vW~~~  421 (441)
                      .-.||.+.
T Consensus       306 ~~~l~~~~  313 (333)
T 2dg1_A          306 GSMLYTVN  313 (333)
T ss_dssp             CEEEEEEE
T ss_pred             CceEEEEe
Confidence            24455443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.59  E-value=1.8e-12  Score=123.45  Aligned_cols=273  Identities=11%  Similarity=0.024  Sum_probs=172.2

Q ss_pred             EEEccCCCCcEEEEee----------CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           48 SLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .++|+| ++++|+.++          .|++|.+||..+.+...         .+ .+.... ..+......+.++| |++
T Consensus        54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~---------~i-~~~~~~-~~~g~~p~~i~~sp-dg~  120 (361)
T 2oiz_A           54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK---------EI-SLPPKR-VQGLNYDGLFRQTT-DGK  120 (361)
T ss_dssp             EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE---------EE-EECTTB-CCBCCCGGGEEECT-TSS
T ss_pred             ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE---------EE-EcCccc-cccCCCcceEEECC-CCC
Confidence            899997 577887775          37789999987654210         11 111000 01112334466665 788


Q ss_pred             EEEEEeC--CCcEEEEECCCCeEEEE-EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceee------eec
Q 013545          118 LFVTGSY--DHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQ------TLS  187 (441)
Q Consensus       118 ~l~sgs~--D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~------~l~  187 (441)
                      +|+++..  +++|.+||+.+++.+.. +...+.. .+.+.|..  ...+++.+.|+.+.+|+++. ++...      .+.
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-~v~~~p~~--~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~  197 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-SVIPQPNR--PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS  197 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-EEEECTTS--SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-eeEEcCCC--CeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence            8887763  68999999999998877 6655432 23345543  24567788899999999865 55441      222


Q ss_pred             CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee--eEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF--RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      .+... ..+.++|++..+ +..+.++.|.++|+......  ..+.....                               
T Consensus       198 ~~~~~-~~~~~~~~g~~~-~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-------------------------------  244 (361)
T 2oiz_A          198 VKDDP-IFIAPALDKDKA-HFVSYYGNVYSADFSGDEVKVDGPWSLLND-------------------------------  244 (361)
T ss_dssp             TTTSC-BCSCCEECSSEE-EEEBTTSEEEEEECSSSSCEEEEEEESCCH-------------------------------
T ss_pred             CCCCc-eEEEecccCCEE-EEEeCCCeEEEEEecCCCceecccccccCc-------------------------------
Confidence            22222 233446776644 44567899999998643211  00000000                               


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-----------CCcEEEeeCC
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-----------DSRIRLWDVE  334 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-----------D~~i~~wd~~  334 (441)
                                           .....+       .  .......++|+||+..+..+..           ..+|.+||+.
T Consensus       245 ---------------------~~~~~~-------~--~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~  294 (361)
T 2oiz_A          245 ---------------------EDKAKN-------W--VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK  294 (361)
T ss_dssp             ---------------------HHHHTT-------C--EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred             ---------------------cccccc-------c--ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence                                 000000       0  0011112679999877665432           3489999999


Q ss_pred             CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCC--ceEeeecccccceEEEEEcCCCCe
Q 013545          335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG--KTCLTFRGHYEYVNCCCFSSQDQE  405 (441)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~--~~~~~l~gh~~~v~~v~fspd~~~  405 (441)
                      +++.    ...+....  +..+++++|+..+++++...+.+||..++  +.+.++..+......++|+|||++
T Consensus       295 t~~~----v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~~  361 (361)
T 2oiz_A          295 TKQR----VARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGGT  361 (361)
T ss_dssp             TTEE----EEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSCC
T ss_pred             CCcE----EEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCCC
Confidence            8753    22333333  88899999999999887789999999999  999998778888899999999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.59  E-value=2.9e-13  Score=141.47  Aligned_cols=163  Identities=13%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             eeeecCCCCc-----eeEEEccCCCCcEEEEeeCC---------CcEEEEECCCCcccCCCCceeccceeEEeecccccC
Q 013545           36 KEIVSPHKGS-----INSLQVDLTEERYLLSGASD---------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG  101 (441)
Q Consensus        36 ~~~~~~H~~~-----V~~l~~s~~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (441)
                      ..++.+|...     .+.++||| ++++|+.++.+         +.+.+||+.++...                  ....
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~------------------~l~~  109 (740)
T 4a5s_A           49 SVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------TEER  109 (740)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------CSSC
T ss_pred             EEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE------------------Eccc
Confidence            4556677533     34478897 58899999987         45569999876431                  1124


Q ss_pred             cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe---e-----------------EEEeeccCCCCcc
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---V-----------------YRTAMSPLAASHM  161 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~  161 (441)
                      |...+....|+| ||+.||.+ .|+.|.+||+.++.... +...+.   +                 ..+.++|++.   
T Consensus       110 ~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~---  183 (740)
T 4a5s_A          110 IPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT---  183 (740)
T ss_dssp             CCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS---
T ss_pred             CCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCC---
Confidence            556677888887 88899888 46899999998877442 222221   1                 2356777653   


Q ss_pred             EEEEEeCC------------------------------------CcEEEEECCC---Cc--eeeeec------CCCCCeE
Q 013545          162 LIAAGTED------------------------------------VQVRLCDIAS---GA--ISQTLS------GHRDGIM  194 (441)
Q Consensus       162 ~las~s~d------------------------------------~~I~vwdl~~---~~--~~~~l~------~h~~~v~  194 (441)
                      .||.++.|                                    ..|++||+++   ++  ....+.      +|...+.
T Consensus       184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  263 (740)
T 4a5s_A          184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLC  263 (740)
T ss_dssp             EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEE
T ss_pred             EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEE
Confidence            45554321                                    1588899998   73  222333      4788899


Q ss_pred             EEEEecCCCcEEEEee----cCCcEEEEEcCCCc
Q 013545          195 TVEWSTSSEWILVTGG----CDGAIRFWDIRRAG  224 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s----~Dg~I~iWD~~~~~  224 (441)
                      .++|+|+++. ++...    .+..|++||+.+++
T Consensus       264 ~~~wspdg~~-~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          264 DVTWATQERI-SLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEEETTEE-EEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEEeCCCeE-EEEEeCCCCCEEEEEEEECCCCc
Confidence            9999999984 34332    23479999988764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.58  E-value=6.8e-13  Score=124.71  Aligned_cols=273  Identities=9%  Similarity=0.008  Sum_probs=177.7

Q ss_pred             CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 013545           64 SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK  143 (441)
Q Consensus        64 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~  143 (441)
                      .+++|.+||.++++....         ++..  ............+.+.  ++.++++...+++|.+||..+++.+.++.
T Consensus        15 ~~~~l~~~d~~t~~~~~~---------i~~~--~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENE---------VFYR--ANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECS---------HHHH--HHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred             CCceEEEEECCCCEEhhh---------hHhh--hcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC
Confidence            489999999987653210         0000  0000111123344443  45566677778999999999999988887


Q ss_pred             cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-----CCeEEEEEecCCCcEEEEee-cCCcEEE
Q 013545          144 MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-----DGIMTVEWSTSSEWILVTGG-CDGAIRF  217 (441)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-----~~v~~v~fsp~~~~~l~s~s-~Dg~I~i  217 (441)
                      .......++++++.   .+.++...++.|.+||+++++....+....     .....+++ .+ ..++++.. .+++|.+
T Consensus        82 ~~~~p~~i~~~~~g---~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~-~~lyv~~~~~~~~v~v  156 (328)
T 3dsm_A           82 GFTSPRYIHFLSDE---KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG-KYVYVNCWSYQNRILK  156 (328)
T ss_dssp             CCSSEEEEEEEETT---EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET-TEEEEEECTTCCEEEE
T ss_pred             CCCCCcEEEEeCCC---eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC-CEEEEEcCCCCCEEEE
Confidence            55566777776642   345554478999999999998876665322     14456777 33 45666654 4889999


Q ss_pred             EEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccc
Q 013545          218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQ  297 (441)
Q Consensus       218 WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (441)
                      +|+.+++....+..                                                                  
T Consensus       157 iD~~t~~~~~~i~~------------------------------------------------------------------  170 (328)
T 3dsm_A          157 IDTETDKVVDELTI------------------------------------------------------------------  170 (328)
T ss_dssp             EETTTTEEEEEEEC------------------------------------------------------------------
T ss_pred             EECCCCeEEEEEEc------------------------------------------------------------------
Confidence            99987654332210                                                                  


Q ss_pred             ccceeeccCeEEEEEccCCCEEEEeecC----------CcEEEeeCCCCCceeeeeeeEEec-cCcceEEEeeCCCcEEE
Q 013545          298 DRATAHYGAVTGLKVTEDGMYLLSAGSD----------SRIRLWDVESGRNTLVNFETVRLQ-TSKPIQLATTQDPAVVF  366 (441)
Q Consensus       298 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D----------~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  366 (441)
                            ......++++|+|+++++...+          ++|.++|..+++..    ...... ...+..+++++++..++
T Consensus       171 ------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~g~~p~~la~~~d~~~ly  240 (328)
T 3dsm_A          171 ------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKLGDWPSEVQLNGTRDTLY  240 (328)
T ss_dssp             ------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCTTCCCEEEEECTTSCEEE
T ss_pred             ------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCCCCCceeEEEecCCCEEE
Confidence                  0113457889999988777655          78999999876521    122221 13577899999999888


Q ss_pred             EeCCCceEEEEccCCceEe--eecccccceEEEEEcCC-CCeEEEe----ecCCcEEEeCCCCCCCCCccCC
Q 013545          367 VPCMTAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSSQ-DQELYTG----GNDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       367 ~~~~~~~~~wd~~~~~~~~--~l~gh~~~v~~v~fspd-~~~l~s~----s~D~~i~vW~~~~~~~~~~~~~  431 (441)
                      +... .+.+||..+++...  .+..+......++++|+ +..+++.    ..++.|.+|++.......+..|
T Consensus       241 v~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G  311 (328)
T 3dsm_A          241 WINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVG  311 (328)
T ss_dssp             EESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEE
T ss_pred             EEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEec
Confidence            8766 88999998887542  12222466899999995 5555565    5788999999983333333333

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=4.7e-12  Score=127.22  Aligned_cols=320  Identities=15%  Similarity=0.090  Sum_probs=189.2

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC-
Q 013545           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN-  134 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~-  134 (441)
                      +.++++...+++|.++|..+++...            .+.  .  +  ..+..+.++| |+.++++++.|+.|.+||+. 
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~------------~i~--~--g--~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKT------------VLD--T--G--YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEE------------EEE--C--S--SCEEEEEECT-TSCEEEEEETTSEEEEEETTS
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEE------------EEe--C--C--CCccceEECC-CCCEEEEEcCCCeEEEEECCC
Confidence            4678899999999999998764310            000  0  1  1233566665 89999999999999999995 


Q ss_pred             -CCeEEEEEecCCeeEEEeec----cCCCCccEEEEEeCCCcEEEEECCCCceeeeecC----------CCC-CeEEEEE
Q 013545          135 -CTRVVMNFKMPGKVYRTAMS----PLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG----------HRD-GIMTVEW  198 (441)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~----------h~~-~v~~v~f  198 (441)
                       +++.+.++........+.++    |++  ..++++...++.|.++|..+.+.++++.-          |.. .+..+.+
T Consensus       228 ~t~~~v~~i~~G~~P~~ia~s~~~~pDG--k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          228 KEPTTVAEIKIGSEARSIETSKMEGWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             CCCcEeEEEecCCCCceeEEccccCCCC--CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence             78888888776666778888    343  34555566679999999999988776542          222 5667777


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCce-----------ee--EeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGC-----------FR--VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      ++++..++++...+|.|.++|....+.           ..  .+......+      +.... .                
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~------~va~~-~----------------  362 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF------ITAAN-A----------------  362 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE------EEEEG-G----------------
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE------EEEeC-C----------------
Confidence            777665556666667777777654311           00  011100000      00000 0                


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEee-cCCcEEEeeCCCCCc---ee
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAG-SDSRIRLWDVESGRN---TL  340 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs-~D~~i~~wd~~~~~~---~~  340 (441)
                        .+.+.....    ..+.+...+..+      ....|.+.-..+ ++|++.. .+++. .+++|.++|..+.+.   ..
T Consensus       363 --sn~V~ViD~----~t~kl~~~i~vg------g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~  429 (567)
T 1qks_A          363 --RNKLVVIDT----KEGKLVAIEDTG------GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  429 (567)
T ss_dssp             --GTEEEEEET----TTTEEEEEEECS------SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             --CCeEEEEEC----CCCcEEEEEecc------CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence              000000000    000000000000      011243322222 6887544 44443 568999999987331   11


Q ss_pred             eeeeeEEeccCcceEEEeeCCCcEEEEeCC--------CceEEEEccCC-----c-eEeeec--------ccccceEEEE
Q 013545          341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM--------TAVKAFDIWSG-----K-TCLTFR--------GHYEYVNCCC  398 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~wd~~~~-----~-~~~~l~--------gh~~~v~~v~  398 (441)
                      .....+.........+.++|++..+++...        ..+-++|+.+.     . ....+.        .-.+.+..+.
T Consensus       430 kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (567)
T 1qks_A          430 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE  509 (567)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE
T ss_pred             EEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee
Confidence            122333333344456778999998888652        37999999776     2 112332        1235689999


Q ss_pred             EcCCCCeEEEee-----cCCcEEEeCCCCCCCCCccCCc
Q 013545          399 FSSQDQELYTGG-----NDRQILVWCPSRHISDGVDAGP  432 (441)
Q Consensus       399 fspd~~~l~s~s-----~D~~i~vW~~~~~~~~~~~~~~  432 (441)
                      |+|||+++...-     .++.|.|.|..+.++...+.++
T Consensus       510 ~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  548 (567)
T 1qks_A          510 FNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  548 (567)
T ss_dssp             ECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             ECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCC
Confidence            999999877542     3789999999998877666653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.56  E-value=1.2e-13  Score=132.59  Aligned_cols=239  Identities=10%  Similarity=-0.028  Sum_probs=149.5

Q ss_pred             EEEeeCCCCEEEEEeC-CCc--EEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          109 AIWYPVDTGLFVTGSY-DHY--VKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       109 ~~~~~~~~~~l~sgs~-D~~--i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      ..|+| |+++|+.++. |+.  |.+||+.+++........+. +....++|++   ..|+.++.+..|++||+.+++...
T Consensus        41 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg---~~l~~~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           41 KCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD---DALFYVKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             CCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS---SEEEEEETTTEEEEEETTTCCEEE
T ss_pred             ccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC---CEEEEEeCCCeEEEEECCCCccee
Confidence            45665 8888988887 664  88889998887654433322 2245677754   367777888899999999998776


Q ss_pred             eecCCCCCeEEEE--EecCCCcEEEEe----------------------ecCCcEEEEEcCCCceeeEeccCCccccCCC
Q 013545          185 TLSGHRDGIMTVE--WSTSSEWILVTG----------------------GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (441)
Q Consensus       185 ~l~~h~~~v~~v~--fsp~~~~~l~s~----------------------s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~  240 (441)
                      .+..+...+....  ++|+++. ++..                      +.+..|.+||+.++....             
T Consensus       117 ~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-------------  182 (388)
T 3pe7_A          117 VYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-------------  182 (388)
T ss_dssp             EEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-------------
T ss_pred             eeechhhcccccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-------------
Confidence            6666666554444  4788874 4421                      123455666655432111             


Q ss_pred             CcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEE
Q 013545          241 PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYL  319 (441)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l  319 (441)
                                                                                 ...+...+..++|+| ||+.|
T Consensus       183 -----------------------------------------------------------l~~~~~~~~~~~~sp~dg~~l  203 (388)
T 3pe7_A          183 -----------------------------------------------------------ILQENQWLGHPIYRPYDDSTV  203 (388)
T ss_dssp             -----------------------------------------------------------EEEESSCEEEEEEETTEEEEE
T ss_pred             -----------------------------------------------------------eecCCccccccEECCCCCCEE
Confidence                                                                       123345578899999 99998


Q ss_pred             EEeecC------CcEEEeeCCCCCceeeeeeeEEecc--CcceEEEeeCCCcEEEEeCC----C--ceEEEEccCCce--
Q 013545          320 LSAGSD------SRIRLWDVESGRNTLVNFETVRLQT--SKPIQLATTQDPAVVFVPCM----T--AVKAFDIWSGKT--  383 (441)
Q Consensus       320 ~sgs~D------~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~--~~~~wd~~~~~~--  383 (441)
                      +..+.+      ..|.++|+.++.....     ....  .......++||+..++..+.    .  .+.+||+.+++.  
T Consensus       204 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~  278 (388)
T 3pe7_A          204 AFCHEGPHDLVDARMWLINEDGTNMRKV-----KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ  278 (388)
T ss_dssp             EEEECSCTTTSSCSEEEEETTSCCCEES-----CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred             EEEEecCCCCCcceEEEEeCCCCceEEe-----eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE
Confidence            877653      3788888876542211     0011  12335678999986644321    1  399999998874  


Q ss_pred             Eeeecccccc---eEEEEEcCCCCeEEEe---------ecCCcEEEeCCCCCCCCCcc
Q 013545          384 CLTFRGHYEY---VNCCCFSSQDQELYTG---------GNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       384 ~~~l~gh~~~---v~~v~fspd~~~l~s~---------s~D~~i~vW~~~~~~~~~~~  429 (441)
                      +..+.++...   ...++|||||++|+..         ..+..|.+|++.++....+.
T Consensus       279 l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (388)
T 3pe7_A          279 LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA  336 (388)
T ss_dssp             EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred             EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence            3344442211   1224799999998843         45678999999887654433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.56  E-value=4.1e-13  Score=138.47  Aligned_cols=242  Identities=14%  Similarity=0.144  Sum_probs=139.8

Q ss_pred             cccceeEEEEeeCCCCEEEEEeCC----------CcEEEEECCC------CeEEEEE-ecCCeeEEEeeccCCCCccEEE
Q 013545          102 HKYAISSAIWYPVDTGLFVTGSYD----------HYVKVWDTNC------TRVVMNF-KMPGKVYRTAMSPLAASHMLIA  164 (441)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~sgs~D----------~~i~iWd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~la  164 (441)
                      |...+..+.|+| |++.|++++.|          .+|.+||+.+      +...... .....+....++|++.   .|+
T Consensus       128 ~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~---~la  203 (662)
T 3azo_A          128 GGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGR---QAV  203 (662)
T ss_dssp             TCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSS---EEE
T ss_pred             CCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCC---EEE
Confidence            556677788887 88999998887          5899999987      5543322 2234455667887653   555


Q ss_pred             EEeCC--------CcEEEEECC-CC---ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEE--EcCCCceeeEec
Q 013545          165 AGTED--------VQVRLCDIA-SG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW--DIRRAGCFRVLD  230 (441)
Q Consensus       165 s~s~d--------~~I~vwdl~-~~---~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iW--D~~~~~~~~~~~  230 (441)
                      .++.+        ..|++||++ ++   +......+|...+..+.|+|+++ ++++++.++..+||  |+.++....+..
T Consensus       204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~  282 (662)
T 3azo_A          204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR  282 (662)
T ss_dssp             EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred             EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc
Confidence            55533        479999999 57   44444556678899999999998 77888888855555  443332211110


Q ss_pred             cCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEE
Q 013545          231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL  310 (441)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  310 (441)
                      .... .                                    ..+.                          ..-.+..+
T Consensus       283 ~~~~-~------------------------------------~~p~--------------------------w~~~~~~~  299 (662)
T 3azo_A          283 REEE-F------------------------------------AGPL--------------------------WTPGMRWF  299 (662)
T ss_dssp             CSSB-S------------------------------------SCCC--------------------------CSTTCCSE
T ss_pred             cccc-c------------------------------------cCcc--------------------------ccccCceE
Confidence            0000 0                                    0000                          00013457


Q ss_pred             EEccCCCEEEEeecCCcEEEe--eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe-CC--C--ceEEEEccCCce
Q 013545          311 KVTEDGMYLLSAGSDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CM--T--AVKAFDIWSGKT  383 (441)
Q Consensus       311 ~~s~dg~~l~sgs~D~~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~--~~~~wd~~~~~~  383 (441)
                      +|+|++.++++++. ++++||  |+.+++.  .   .+.........+ .++++..++.. ..  .  .+..+|+.+++.
T Consensus       300 ~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~--~---~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          300 APLANGLIAVVHGK-GAAVLGILDPESGEL--V---DAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EECTTSCEEEEEBS-SSCEEEEEETTTTEE--E---ECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eEeCCCEEEEEEEc-CccEEEEEECCCCcE--E---EecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            89999999999998 999999  5554431  1   111111111122 14444443332 22  2  455556667765


Q ss_pred             EeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          384 CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       384 ~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                      ......|...+....+++.....+.+..+..|..|
T Consensus       373 ~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~  407 (662)
T 3azo_A          373 RTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAH  407 (662)
T ss_dssp             EEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEE
T ss_pred             EEeecCCcccCCccccCcceEEEEEcCCCCEEEEE
Confidence            54445555444444455444444544444455444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.55  E-value=2.1e-12  Score=121.38  Aligned_cols=246  Identities=13%  Similarity=0.139  Sum_probs=160.5

Q ss_pred             CCceeEEEccCCCCcEEEEeeCC------------------------CcEEEEECCCCcccCCCCceeccceeEEeeccc
Q 013545           43 KGSINSLQVDLTEERYLLSGASD------------------------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQH   98 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~D------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (441)
                      .+.|.+|+++| +++++++.+.+                        ++|.+||..+++...             .   .
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-------------~---~   85 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ-------------S---S   85 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE-------------E---E
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe-------------c---c
Confidence            47899999996 57888888888                        468888876553210             0   0


Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-EEEEEec-------C---CeeEEEeeccCCCCccEEEEEe
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-VVMNFKM-------P---GKVYRTAMSPLAASHMLIAAGT  167 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-~~~~~~~-------~---~~~~~~~~~~~~~~~~~las~s  167 (441)
                      ..++-.....+++.+ ++.++++...++.|++||..... .+..+..       .   .....+++.+.  +..++++.+
T Consensus        86 ~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--~g~lyv~d~  162 (329)
T 3fvz_A           86 GKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--TGAVFVSDG  162 (329)
T ss_dssp             CTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--TCCEEEEEC
T ss_pred             CCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC--CCeEEEEeC
Confidence            113334566777775 78888998899999999986542 4444421       1   13556777762  234666665


Q ss_pred             -CCCcEEEEECCCCceeeeecC----------CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccc
Q 013545          168 -EDVQVRLCDIASGAISQTLSG----------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (441)
Q Consensus       168 -~d~~I~vwdl~~~~~~~~l~~----------h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~  236 (441)
                       .++.|++|| .+++.+..+..          +......++++|++..++++...++.|++||..+++.+..+...    
T Consensus       163 ~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~----  237 (329)
T 3fvz_A          163 YCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA----  237 (329)
T ss_dssp             SSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT----
T ss_pred             CCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc----
Confidence             689999999 56777666642          33448899999985557888888999999998866554433110    


Q ss_pred             cCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--
Q 013545          237 GRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--  314 (441)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--  314 (441)
                                                                                       .+...+.+++|+|  
T Consensus       238 -----------------------------------------------------------------~~~~~~~~~~~~pg~  252 (329)
T 3fvz_A          238 -----------------------------------------------------------------SFGRNVFAISYIPGF  252 (329)
T ss_dssp             -----------------------------------------------------------------TTTTCEEEEEEETTE
T ss_pred             -----------------------------------------------------------------ccCCCcceeeecCCE
Confidence                                                                             1112355667777  


Q ss_pred             ----CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEcc
Q 013545          315 ----DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIW  379 (441)
Q Consensus       315 ----dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~  379 (441)
                          +|...++...+.+|++||+.+++... .+.........+..+++++++.++++... ..+++|++.
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~-~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIID-VFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCCEEE-EECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCeEEE-EEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence                55555555566799999998876321 11110122345778899999965555433 578888874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=2.5e-12  Score=118.78  Aligned_cols=229  Identities=10%  Similarity=0.097  Sum_probs=151.2

Q ss_pred             eeEEEEeeCCCC-EEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee
Q 013545          106 ISSAIWYPVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (441)
Q Consensus       106 V~~~~~~~~~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~  183 (441)
                      ..+++|.+ +++ +++++..++.|..||..++  ...+.. .+.+..+.+.+++   .++++...++.|.+||.++++..
T Consensus        30 ~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg---~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           30 TEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG---HLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             EEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC---CEEEEETTTTEEEEECSTTCCEE
T ss_pred             ccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC---cEEEEecCCCeEEEEcCCCCcEE
Confidence            44677776 566 7888889999999999887  444443 3446677777643   36666666788999999888754


Q ss_pred             eeecCC----CCCeEEEEEecCCCcEEEEeecCC---------------cEEEEEcCCCceeeEeccCCccccCCCCccc
Q 013545          184 QTLSGH----RDGIMTVEWSTSSEWILVTGGCDG---------------AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK  244 (441)
Q Consensus       184 ~~l~~h----~~~v~~v~fsp~~~~~l~s~s~Dg---------------~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~  244 (441)
                      ......    ...+..++++|+|+ ++++.+..|               .-.||.+...+.+..                
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~----------------  166 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSA----------------  166 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEE----------------
T ss_pred             EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCCCEEE----------------
Confidence            433221    23456799999987 566632111               113333221110000                


Q ss_pred             ccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec
Q 013545          245 RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS  324 (441)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  324 (441)
                                                                             ...+......++|+|||+.+++.+.
T Consensus       167 -------------------------------------------------------~~~~~~~~~gi~~s~dg~~lv~~~~  191 (296)
T 3e5z_A          167 -------------------------------------------------------PIRDRVKPNGLAFLPSGNLLVSDTG  191 (296)
T ss_dssp             -------------------------------------------------------EECCCSSEEEEEECTTSCEEEEETT
T ss_pred             -------------------------------------------------------eecCCCCCccEEECCCCCEEEEeCC
Confidence                                                                   0112234678999999999888888


Q ss_pred             CCcEEEeeCC-CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE-cCC
Q 013545          325 DSRIRLWDVE-SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF-SSQ  402 (441)
Q Consensus       325 D~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f-spd  402 (441)
                      +++|++||+. .++.. ............+..+++.+++.+.++. ...+.+|+.. ++.+..+..+.. +.+++| +||
T Consensus       192 ~~~i~~~~~~~~g~~~-~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d  267 (296)
T 3e5z_A          192 DNATHRYCLNARGETE-YQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPE  267 (296)
T ss_dssp             TTEEEEEEECSSSCEE-EEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTT
T ss_pred             CCeEEEEEECCCCcCc-CCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCC
Confidence            9999999997 33320 1011111123445567888999876666 7789999985 888888888888 999999 589


Q ss_pred             CCeEEEeecCCcEE
Q 013545          403 DQELYTGGNDRQIL  416 (441)
Q Consensus       403 ~~~l~s~s~D~~i~  416 (441)
                      ++.|+.++.++..+
T Consensus       268 ~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          268 GRTLYMTVSTEFWS  281 (296)
T ss_dssp             SCEEEEEETTEEEE
T ss_pred             CCEEEEEcCCeEEE
Confidence            99999888775433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.54  E-value=7.2e-12  Score=130.30  Aligned_cols=247  Identities=11%  Similarity=0.044  Sum_probs=157.8

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCC-----cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCc---
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDH-----YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ---  171 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~---  171 (441)
                      .+|+..+..+.|+| |+++||.++.++     +|++||+.+++.+........+..+.|+|++.   .|+.++.+..   
T Consensus       121 ~~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~---~l~~~~~~~~~~~  196 (710)
T 2xdw_A          121 DDGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGK---GMFYNAYPQQDGK  196 (710)
T ss_dssp             TTSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSS---EEEEEECCCCSSC
T ss_pred             cCCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCC---EEEEEEECCcccc
Confidence            35666777888886 888888766543     89999999998765322222244567887643   4555555554   


Q ss_pred             -------------EEEEECCCCce----eeeecCCCCCeEEEEEecCCCcEEEEeec----CCcEEEEEcCC------Cc
Q 013545          172 -------------VRLCDIASGAI----SQTLSGHRDGIMTVEWSTSSEWILVTGGC----DGAIRFWDIRR------AG  224 (441)
Q Consensus       172 -------------I~vwdl~~~~~----~~~l~~h~~~v~~v~fsp~~~~~l~s~s~----Dg~I~iWD~~~------~~  224 (441)
                                   |++|++.++..    +.....|...+..+.|+|++++++++...    +..|.+||+.+      +.
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  276 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence                         99999988763    22233456678899999999976554431    56899999764      11


Q ss_pred             -eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee
Q 013545          225 -CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH  303 (441)
Q Consensus       225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  303 (441)
                       .+..                                                                       +..+
T Consensus       277 ~~~~~-----------------------------------------------------------------------l~~~  285 (710)
T 2xdw_A          277 LKWVK-----------------------------------------------------------------------LIDN  285 (710)
T ss_dssp             CCCEE-----------------------------------------------------------------------EECS
T ss_pred             cceEE-----------------------------------------------------------------------eeCC
Confidence             0000                                                                       0112


Q ss_pred             ccCeEEEEEccCCCEEEEeecC----CcEEEeeCCCCCceeeeeeeEEeccC--cceEEEeeCCCcEEEEeCC---CceE
Q 013545          304 YGAVTGLKVTEDGMYLLSAGSD----SRIRLWDVESGRNTLVNFETVRLQTS--KPIQLATTQDPAVVFVPCM---TAVK  374 (441)
Q Consensus       304 ~~~v~~l~~s~dg~~l~sgs~D----~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~  374 (441)
                      ...+.. .|+|+|..|+..+.+    ..|.+||+.++....  ...+.....  ....+.+.+++.++++...   ..+.
T Consensus       286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK--WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence            222333 478888877655543    369999998764210  011111111  1223555656666555433   2467


Q ss_pred             EEEccCCceEeeecccccceEEEEEcCCCCeEE-Eee---cCCcEEEeCCCCCC
Q 013545          375 AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-TGG---NDRQILVWCPSRHI  424 (441)
Q Consensus       375 ~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~-s~s---~D~~i~vW~~~~~~  424 (441)
                      +|++.+|+.+..+..|.+.|..++++||++.|+ +.+   ..++|.+|++.++.
T Consensus       363 ~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          363 LHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            788878888888888888899999999997765 333   34689999998776

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=8.2e-12  Score=117.78  Aligned_cols=256  Identities=9%  Similarity=0.057  Sum_probs=158.4

Q ss_pred             CceeEEEccCCCCcEEEEe---------eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           44 GSINSLQVDLTEERYLLSG---------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~---------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ..+..+++   +|++++..         +.++.|.+||+.++...          .+            ..+..+.|+| 
T Consensus        15 ~~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------~l------------~~~~~~~~Sp-   68 (347)
T 2gop_A           15 AYLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----------FI------------ENATMPRISP-   68 (347)
T ss_dssp             CEEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----------EE------------ESCEEEEECT-
T ss_pred             EEcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----------Ec------------ccCCCeEECC-
Confidence            44666666   45566543         23677999998765310          00            2355677876 


Q ss_pred             CCCEEEEEeCC---C--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---------------------
Q 013545          115 DTGLFVTGSYD---H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---------------------  168 (441)
Q Consensus       115 ~~~~l~sgs~D---~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---------------------  168 (441)
                      |+++||.++.+   +  .|.+||+.+++.......+. +..+.++|++.   .|+.++.                     
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~  144 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDL  144 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSS---EEEEEEECCCC---------CCCC----
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCC---EEEEEEccCCCcCCcEEEcccceeecCc
Confidence            78888887754   2  37788998887665555555 77788888643   3444432                     


Q ss_pred             ------CCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC-------cEEEEEcCCCceeeEeccCCcc
Q 013545          169 ------DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-------AIRFWDIRRAGCFRVLDQSQSQ  235 (441)
Q Consensus       169 ------d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-------~I~iWD~~~~~~~~~~~~~~~~  235 (441)
                            ...|.+||+.+++.+..+.. . .+..+.|+|++  ++++++.+.       ..+||.+.++. ...       
T Consensus       145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~-------  212 (347)
T 2gop_A          145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK-EEK-------  212 (347)
T ss_dssp             -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE-EEE-------
T ss_pred             ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc-eEE-------
Confidence                  25799999999887455554 4 78899999998  556665542       44555443221 110       


Q ss_pred             ccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC
Q 013545          236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  315 (441)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  315 (441)
                                                                                      ...+ ..+..+  +||
T Consensus       213 ----------------------------------------------------------------l~~~-~~~~~~--spd  225 (347)
T 2gop_A          213 ----------------------------------------------------------------MFEK-VSFYAV--DSD  225 (347)
T ss_dssp             ----------------------------------------------------------------EEEE-ESEEEE--EEC
T ss_pred             ----------------------------------------------------------------eccC-cceeeE--CCC
Confidence                                                                            0112 334443  999


Q ss_pred             CCEEEEeecC--------CcEEEeeCCCCCceeeeeeeEEec-cCcceE-EEeeCCCcEEEEeC-CCceEEEEccCCceE
Q 013545          316 GMYLLSAGSD--------SRIRLWDVESGRNTLVNFETVRLQ-TSKPIQ-LATTQDPAVVFVPC-MTAVKAFDIWSGKTC  384 (441)
Q Consensus       316 g~~l~sgs~D--------~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~  384 (441)
                      |++|+.++.+        ..|.+||  +++...     +... ...... +.++ ++ +++++. ....++| +.+++. 
T Consensus       226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-----l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-  294 (347)
T 2gop_A          226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-----ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-  294 (347)
T ss_dssp             SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE-----SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-
T ss_pred             CCEEEEEEccccCCccccceEEEEC--CCceEe-----ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-
Confidence            9998877754        3677887  433111     0001 111222 5566 66 555543 3578899 876665 


Q ss_pred             eeecccccceEEEEEcCCCCeEEEeecCCcE-EEeCCC
Q 013545          385 LTFRGHYEYVNCCCFSSQDQELYTGGNDRQI-LVWCPS  421 (441)
Q Consensus       385 ~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i-~vW~~~  421 (441)
                      ..+..+...|.+++|+|  +.+++++.+++. +||..+
T Consensus       295 ~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          295 KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            44444578899999999  677787777764 788765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.49  E-value=3.4e-12  Score=132.42  Aligned_cols=247  Identities=10%  Similarity=0.012  Sum_probs=149.7

Q ss_pred             ccCcccceeEEEEeeCCCCEEE-----EEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCc-
Q 013545           99 EHGHKYAISSAIWYPVDTGLFV-----TGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQ-  171 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~-----sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~-  171 (441)
                      ..+|...+..+.|+| |+++||     +|+.+.+|++||+.+++.+......+. ...+.|++++.   .|+.++.|.. 
T Consensus       116 a~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~---~l~~~~~d~~~  191 (695)
T 2bkl_A          116 SKDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSK---GFYYEWLPTDP  191 (695)
T ss_dssp             SSSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSS---EEEEEECCCCT
T ss_pred             ccCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCC---EEEEEEecCCC
Confidence            346777788888886 899988     566678999999999886411111111 14567777643   5666666655 


Q ss_pred             ------------EEEEECCCCc----eeeeecCCCCCeEEEEEecCCCcEEEEeecC-C--cEEEEEcCCCceeeEeccC
Q 013545          172 ------------VRLCDIASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-G--AIRFWDIRRAGCFRVLDQS  232 (441)
Q Consensus       172 ------------I~vwdl~~~~----~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g--~I~iWD~~~~~~~~~~~~~  232 (441)
                                  |++|++.++.    ++....+|...+.++.|+|+|++++++...+ +  .|.+||...+.. ..    
T Consensus       192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~----  266 (695)
T 2bkl_A          192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RL----  266 (695)
T ss_dssp             TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EE----
T ss_pred             CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EE----
Confidence                        9999999886    3334445667889999999999865554433 3  444444322110 00    


Q ss_pred             CccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEE
Q 013545          233 QSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV  312 (441)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  312 (441)
                                                                                         +..+...+....+
T Consensus       267 -------------------------------------------------------------------l~~~~~~~~~~~~  279 (695)
T 2bkl_A          267 -------------------------------------------------------------------LVKGVGAKYEVHA  279 (695)
T ss_dssp             -------------------------------------------------------------------EEECSSCCEEEEE
T ss_pred             -------------------------------------------------------------------eecCCCceEEEEe
Confidence                                                                               0112222334445


Q ss_pred             ccCCCEEEEee---cCCcEEEeeCCCCCceeeeeeeEEecc-Cc-ceEEEeeCCCcEEEEeCC-CceEEEEcc-CCceEe
Q 013545          313 TEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRLQT-SK-PIQLATTQDPAVVFVPCM-TAVKAFDIW-SGKTCL  385 (441)
Q Consensus       313 s~dg~~l~sgs---~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-~~~~~wd~~-~~~~~~  385 (441)
                       ++|..+++..   .+++|.+||+.++....  ...+.... .. ...+++. ++.++++... ...++|.+. +++...
T Consensus       280 -~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  355 (695)
T 2bkl_A          280 -WKDRFYVLTDEGAPRQRVFEVDPAKPARAS--WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR  355 (695)
T ss_dssp             -ETTEEEEEECTTCTTCEEEEEBTTBCSGGG--CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred             -cCCcEEEEECCCCCCCEEEEEeCCCCCccC--CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence             5555444443   36889999998764210  01111111 11 2224444 4455554432 445666543 466667


Q ss_pred             eeccc-ccceEEEEEcCCCCeEE----EeecCCcEEEeCCCCCCC
Q 013545          386 TFRGH-YEYVNCCCFSSQDQELY----TGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       386 ~l~gh-~~~v~~v~fspd~~~l~----s~s~D~~i~vW~~~~~~~  425 (441)
                      .+..+ .+.|..++++||++.|+    +....++|.+|++.++..
T Consensus       356 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          356 TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            77766 67788999999998877    344457899999988764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=5.2e-11  Score=108.83  Aligned_cols=215  Identities=10%  Similarity=0.075  Sum_probs=153.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC-CCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-RDG  192 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h-~~~  192 (441)
                      +++|++++.|+.|.+||.++++.+.++..+.  .+..+.+.+++   .+++  +.++.|..||. +|+.+..+..+ ...
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG---~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG---EILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS---CEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC---CEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            5689999999999999999999998888654  46677777754   3566  34778999999 89998888765 357


Q ss_pred             eEEEEEecCCCcEEEEeec-CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          193 IMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       193 v~~v~fsp~~~~~l~s~s~-Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      +.++.+.|+++. +++.+. ++.|..+|. .++.+..+.....                                     
T Consensus        79 ~~~~~~~~dG~~-lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~-------------------------------------  119 (276)
T 3no2_A           79 MQTARILPDGNA-LVAWCGHPSTILEVNM-KGEVLSKTEFETG-------------------------------------  119 (276)
T ss_dssp             EEEEEECTTSCE-EEEEESTTEEEEEECT-TSCEEEEEEECCS-------------------------------------
T ss_pred             ccccEECCCCCE-EEEecCCCCEEEEEeC-CCCEEEEEeccCC-------------------------------------
Confidence            889999999985 566665 666666664 4443322210000                                     


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                                  ...+......+++.++|.+|++...+++|..||.. ++... .+   .. ..
T Consensus       120 ----------------------------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w-~~---~~-~~  165 (276)
T 3no2_A          120 ----------------------------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN-SV---KL-SG  165 (276)
T ss_dssp             ----------------------------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE---EC-SS
T ss_pred             ----------------------------CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE-EE---EC-CC
Confidence                                        00011123345789999999999999999999998 76422 12   11 23


Q ss_pred             cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccc------cceEEEEEcCCCCeEEEe
Q 013545          352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY------EYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~------~~v~~v~fspd~~~l~s~  409 (441)
                      .+......+++.++++... ..+..+|..+|+.+-++..+.      ..+..++..++|..+++.
T Consensus       166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            4555667788888777655 469999999999988886543      237899999999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.47  E-value=6.6e-10  Score=101.94  Aligned_cols=279  Identities=9%  Similarity=0.079  Sum_probs=178.0

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .+...+.+|++++ ++++.++...++.|.+||.. +...           .+..     ..+...+..+++.+ ++.+++
T Consensus        12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-----------~~~~-----~~~~~~~~~i~~~~-~g~l~v   72 (299)
T 2z2n_A           12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-----------EYPL-----PTPDAKVMCLTISS-DGEVWF   72 (299)
T ss_dssp             SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-----------EEEC-----SSTTCCEEEEEECT-TSCEEE
T ss_pred             CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-----------EecC-----CcccCceeeEEECC-CCCEEE
Confidence            4557899999986 57777777778999999976 3210           0000     01224566677665 677777


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEE
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV  196 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v  196 (441)
                      +...++.|..||.. +.. ..+..+   ..+..+.+.+.   ..+.++...++.|.+||. +++... .+..+...+.++
T Consensus        73 ~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i  146 (299)
T 2z2n_A           73 TENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPN---GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI  146 (299)
T ss_dssp             EETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             eCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCC---CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence            77778899999986 332 333322   23555666553   245565556788999999 665433 233455678999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      ++.|++. ++++...++.|..||. ++.... +..                                             
T Consensus       147 ~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~---------------------------------------------  178 (299)
T 2z2n_A          147 TLGSDNA-LWFTENQNNAIGRITE-SGDITE-FKI---------------------------------------------  178 (299)
T ss_dssp             EECTTSC-EEEEETTTTEEEEECT-TCCEEE-EEC---------------------------------------------
T ss_pred             EEcCCCC-EEEEeCCCCEEEEEcC-CCcEEE-eeC---------------------------------------------
Confidence            9999986 5666666788999987 432111 000                                             


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                              ..+...+.+++++++|...++...++.|.+||. +++..  .+. .......+..+
T Consensus       179 ------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--~~~-~~~~~~~~~~i  230 (299)
T 2z2n_A          179 ------------------------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--EFK-IPTPNARPHAI  230 (299)
T ss_dssp             ------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--EEE-CSSTTCCEEEE
T ss_pred             ------------------------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--EEE-CCCCCCCceeE
Confidence                                    001123678999999998888777889999998 55421  111 11122446677


Q ss_pred             EeeCCCcEEEEe-CCCceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          357 ATTQDPAVVFVP-CMTAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       357 ~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      ++.+++.+.+.. ....+..||. ++.... .+.++...+.++++ ++|+.+++.+ .+.|..+++.+.
T Consensus       231 ~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          231 TAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             EECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            888888766554 3468999998 454322 23455677999999 8888877765 455666666554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.44  E-value=1.3e-12  Score=125.43  Aligned_cols=235  Identities=9%  Similarity=-0.004  Sum_probs=139.1

Q ss_pred             eeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEE-EeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545          106 ISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYR-TAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~las~s~d~~I~vwdl~~~~  181 (441)
                      +..+.++| |+++|+..+.+   ..|.+||+.+++............. ..++|++   ..|+.++.++.|++||+.+++
T Consensus        38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg---~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE---RAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS---SEEEEEETTTEEEEEETTTCC
T ss_pred             eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC---CEEEEEEcCCcEEEEECCCCC
Confidence            44456665 78887766543   4688889988875433222222211 4456654   467777778899999999988


Q ss_pred             eeeeecCCCCCeEEEEEecCCCcEEEEeecCCc------------------------------EEEEEcCCCceeeEecc
Q 013545          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA------------------------------IRFWDIRRAGCFRVLDQ  231 (441)
Q Consensus       182 ~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~------------------------------I~iWD~~~~~~~~~~~~  231 (441)
                      .......+..      |+|+++. |+..+.+..                              |.+||+.+++..     
T Consensus       114 ~~~~~~~~~~------~~~~g~~-l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~-----  181 (396)
T 3c5m_A          114 EQVIYTVDEE------WKGYGTW-VANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE-----  181 (396)
T ss_dssp             EEEEEECCTT------EEEEEEE-EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE-----
T ss_pred             cEEEEecccc------cCCCCCE-EEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE-----
Confidence            6655554444      3444432 233333333                              444443322110     


Q ss_pred             CCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE
Q 013545          232 SQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK  311 (441)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  311 (441)
                                                                                         ....+...+..+.
T Consensus       182 -------------------------------------------------------------------~~~~~~~~~~~~~  194 (396)
T 3c5m_A          182 -------------------------------------------------------------------VIHQDTAWLGHPI  194 (396)
T ss_dssp             -------------------------------------------------------------------EEEEESSCEEEEE
T ss_pred             -------------------------------------------------------------------eeccCCcccccce
Confidence                                                                               0113445678899


Q ss_pred             Ecc-CCCEEEEeecC------CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC----CCc--eEEEEc
Q 013545          312 VTE-DGMYLLSAGSD------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTA--VKAFDI  378 (441)
Q Consensus       312 ~s~-dg~~l~sgs~D------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~wd~  378 (441)
                      |+| ++..|+..+.+      .+|.+||+.+++...  +.. .........+.+++++..++...    ...  +.+||+
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK--IKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE--SSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE--eec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence            999 78877665543      468889987654211  100 00011234568899998655542    123  899999


Q ss_pred             cCCceEeeecccccceEEEEEcC-CCCeEEEee----------------cCCcEEEeCCCCCCCCCcc
Q 013545          379 WSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGG----------------NDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       379 ~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s----------------~D~~i~vW~~~~~~~~~~~  429 (441)
                      .+++...... ... .. ++|+| ||++|++++                .+..|.+|++.++....+.
T Consensus       272 ~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (396)
T 3c5m_A          272 ETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC  336 (396)
T ss_dssp             TTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred             CCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence            8886543221 112 23 89999 999988754                3478999999887654443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.43  E-value=4.6e-11  Score=108.34  Aligned_cols=240  Identities=10%  Similarity=0.011  Sum_probs=153.9

Q ss_pred             ceeEEEEeeCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545          105 AISSAIWYPVDTGLFV-TGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~-sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~  181 (441)
                      ...++++.+ ++.+++ +.+.++.|.+||..+.... .+...  .....+++.++   ..++++.. ++.|.+||..+..
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~---g~l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGA---GTVYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTT---CCEEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCC---CCEEEEcC-CCEEEEEeCCCce
Confidence            344566665 677777 5578899999997654432 12111  23444555553   23454444 8899999987765


Q ss_pred             eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP  261 (441)
Q Consensus       182 ~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (441)
                      ...........+.++++.|++. ++++...++.|.+||..+......                                 
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~---------------------------------  144 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVL---------------------------------  144 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEEC---------------------------------
T ss_pred             EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEee---------------------------------
Confidence            4322223346789999999886 677767788899997543210000                                 


Q ss_pred             CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee
Q 013545          262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~  341 (441)
                                                            .......+.+|+++++|+.+++...++.|.+||.........
T Consensus       145 --------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  186 (270)
T 1rwi_B          145 --------------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL  186 (270)
T ss_dssp             --------------------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC
T ss_pred             --------------------------------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee
Confidence                                                  000112356789999999888888889999999876542111


Q ss_pred             eeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          342 NFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      .    ......+..+++.+++.+.++.. ...+..|+............+...+.+++++|+|+.+++...++.|+++++
T Consensus       187 ~----~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          187 P----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             C----CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             c----ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            0    01114466778888886655554 357999998665443333344467899999999998889889999999999


Q ss_pred             CCCCCC
Q 013545          421 SRHISD  426 (441)
Q Consensus       421 ~~~~~~  426 (441)
                      ...++.
T Consensus       263 ~~~~~~  268 (270)
T 1rwi_B          263 LEHHHH  268 (270)
T ss_dssp             CGGGSC
T ss_pred             CCcccc
Confidence            876653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.42  E-value=2.7e-11  Score=114.19  Aligned_cols=213  Identities=11%  Similarity=0.085  Sum_probs=130.9

Q ss_pred             CCCEEEEE---------eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC---C--cEEEEECCCC
Q 013545          115 DTGLFVTG---------SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---V--QVRLCDIASG  180 (441)
Q Consensus       115 ~~~~l~sg---------s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d---~--~I~vwdl~~~  180 (441)
                      ||.+++..         +.+..|.+||+.+++... +   ..+....++|++.   .|+..+.+   +  .|.+||++++
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~---~la~~~~~~~~~~~~l~~~~~~~g   95 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I---ENATMPRISPDGK---KIAFMRANEEKKVSEIWVADLETL   95 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E---ESCEEEEECTTSS---EEEEEEEETTTTEEEEEEEETTTT
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c---ccCCCeEECCCCC---EEEEEEeccCCCcceEEEEECCCC
Confidence            56666543         236789999998877533 2   3466778888753   45444432   2  4888899988


Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEeecC---------------------------CcEEEEEcCCCceeeEeccCC
Q 013545          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---------------------------GAIRFWDIRRAGCFRVLDQSQ  233 (441)
Q Consensus       181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D---------------------------g~I~iWD~~~~~~~~~~~~~~  233 (441)
                      +.......+ . +..+.|+|+++.++ .++.+                           ..|.+||+.++.....     
T Consensus        96 ~~~~l~~~~-~-~~~~~wspdg~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~-----  167 (347)
T 2gop_A           96 SSKKILEAK-N-IRSLEWNEDSRKLL-IVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE-----  167 (347)
T ss_dssp             EEEEEEEES-E-EEEEEECTTSSEEE-EEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE-----
T ss_pred             ceEEEEcCC-C-ccceeECCCCCEEE-EEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee-----
Confidence            765544433 3 99999999998654 44432                           2344444433211000     


Q ss_pred             ccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc
Q 013545          234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT  313 (441)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  313 (441)
                                                                                        ... . .+..++|+
T Consensus       168 ------------------------------------------------------------------l~~-~-~~~~~~~s  179 (347)
T 2gop_A          168 ------------------------------------------------------------------FEK-P-RFSSGIWH  179 (347)
T ss_dssp             ------------------------------------------------------------------EEE-E-TTCEEEEE
T ss_pred             ------------------------------------------------------------------ecC-C-CcccccCC
Confidence                                                                              111 2 46788999


Q ss_pred             cCCCEEEEeecCC-------cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC---------CceEEEE
Q 013545          314 EDGMYLLSAGSDS-------RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM---------TAVKAFD  377 (441)
Q Consensus       314 ~dg~~l~sgs~D~-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~wd  377 (441)
                      ||| .+++++.+.       ...||.+.+++.  ..+..   .  .... ..+|++..++..+.         ..+.+||
T Consensus       180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~l~~---~--~~~~-~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          180 RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--EKMFE---K--VSFY-AVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             TTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--EEEEE---E--ESEE-EEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             CCe-EEEEEecccccccccccccEEEeCCCce--EEecc---C--ccee-eECCCCCEEEEEEccccCCccccceEEEEC
Confidence            999 777776552       345554443331  11111   1  1122 23888887655432         2455666


Q ss_pred             ccCCceEeeecccccceEE-EEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          378 IWSGKTCLTFRGHYEYVNC-CCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       378 ~~~~~~~~~l~gh~~~v~~-v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                        +++....+.+|...+.. ++|+ |+ .+++++.|+.++|| +.++.
T Consensus       251 --~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          251 --GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             --SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred             --CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence              66665666777888886 9999 88 88899999999999 87443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.42  E-value=1.3e-10  Score=107.09  Aligned_cols=241  Identities=11%  Similarity=0.021  Sum_probs=153.6

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+..+.....+++|+|++..+++++..++.|.+||..++ .           ..+       ..+...+.++++.+ ++.
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----------~~~-------~~~~~~~~~l~~~~-dg~   81 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----------SPE-------MHPSHHQNGHCLNK-QGH   81 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----------EEE-------ESSCSSEEEEEECT-TCC
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----------EEE-------ECCCCCcceeeECC-CCc
Confidence            344556678899999753337889999999999998754 1           001       12344566777766 787


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEec-CC----eeEEEeeccCCCCccEEEE----Ee-------------CCCcEEEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PG----KVYRTAMSPLAASHMLIAA----GT-------------EDVQVRLC  175 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~las----~s-------------~d~~I~vw  175 (441)
                      ++++...++.|.+||..+++....... .+    .+..+.+.+++   .++++    |+             ..+.|..+
T Consensus        82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G---~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~  158 (296)
T 3e5z_A           82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG---SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL  158 (296)
T ss_dssp             EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS---CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred             EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC---CEEEECCccccccccccccccccCCCcEEEEE
Confidence            888777789999999988875433221 11    22345565543   35554    32             12356666


Q ss_pred             ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC-CCce---eeEeccCCccccCCCCcccccccccC
Q 013545          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGC---FRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      +.. ++ ...+..+......++|+|+++.+ ++.+.++.|.+||+. .+..   ...+                      
T Consensus       159 ~~~-g~-~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~----------------------  213 (296)
T 3e5z_A          159 APD-GT-LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF----------------------  213 (296)
T ss_dssp             CTT-SC-EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE----------------------
T ss_pred             CCC-CC-EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe----------------------
Confidence            655 44 34455667778999999999865 888888999999986 2221   0000                      


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  331 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w  331 (441)
                                                                       ..+.+.+.+|+++++|+.+++.  ++.|.+|
T Consensus       214 -------------------------------------------------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          214 -------------------------------------------------TVEPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             -------------------------------------------------CCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             -------------------------------------------------eCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence                                                             0011234568999999977766  8899999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEe-eCCCcEEEEeCCCceEEEEccCCce
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLAT-TQDPAVVFVPCMTAVKAFDIWSGKT  383 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~  383 (441)
                      |.. ++.    +........ +..+++ .+++..+++.+...+-.++..+.++
T Consensus       243 ~~~-g~~----~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~  289 (296)
T 3e5z_A          243 TPD-GDE----LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL  289 (296)
T ss_dssp             CTT-SCE----EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred             CCC-CCE----EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence            987 332    122233333 666777 4788878777666665666655543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.41  E-value=1.5e-10  Score=108.61  Aligned_cols=254  Identities=10%  Similarity=0.052  Sum_probs=163.3

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      .....+.+.  +++..++...+++|.+||..+++...         .   +.      .......+++++ ++.++++..
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~---------~---i~------~~~~p~~i~~~~-~g~lyv~~~  102 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVG---------R---IT------GFTSPRYIHFLS-DEKAYVTQI  102 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEE---------E---EE------CCSSEEEEEEEE-TTEEEEEEB
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEE---------E---cC------CCCCCcEEEEeC-CCeEEEEEC
Confidence            346778775  46677788888999999998765311         0   00      112344566655 565555555


Q ss_pred             CCCcEEEEECCCCeEEEEEecCC------eeEEEeeccCCCCccEEEEEe-CCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGT-EDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~las~s-~d~~I~vwdl~~~~~~~~l~~h~~~v~~v  196 (441)
                      .++.|.+||+.+++.+..+....      ....+.+ .   +..++++.. .++.|.++|+++++.+..+... .....+
T Consensus       103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~---~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i  177 (328)
T 3dsm_A          103 WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y---GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSL  177 (328)
T ss_dssp             SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E---TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCC
T ss_pred             CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E---CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccce
Confidence            89999999999999887777554      3344444 1   234455544 4889999999999888777642 335688


Q ss_pred             EEecCCCcEEEEeecC----------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          197 EWSTSSEWILVTGGCD----------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~D----------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      .++|+++ +++++..+          +.|.++|..+++....+..                                   
T Consensus       178 ~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-----------------------------------  221 (328)
T 3dsm_A          178 VMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-----------------------------------  221 (328)
T ss_dssp             EECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-----------------------------------
T ss_pred             EEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEec-----------------------------------
Confidence            9999987 56666544          7899999876543322110                                   


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  346 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~  346 (441)
                                                         ........|+|+|++++|..+..  +|.+||+.+++.....+  .
T Consensus       222 -----------------------------------~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~--~  262 (328)
T 3dsm_A          222 -----------------------------------KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF--L  262 (328)
T ss_dssp             -----------------------------------CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS--B
T ss_pred             -----------------------------------CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee--e
Confidence                                               00013678999999988876654  89999998876321111  0


Q ss_pred             EeccCcceEEEeeCCCcEEEEeC------CCceEEEEccCCceEeeecccccceEEEEEc
Q 013545          347 RLQTSKPIQLATTQDPAVVFVPC------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS  400 (441)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs  400 (441)
                      ......+..+++.|++..++++.      ...+.+||.. ++.+.++..-.. -..++|-
T Consensus       263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~~  320 (328)
T 3dsm_A          263 EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCWK  320 (328)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEEE
T ss_pred             cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEEe
Confidence            11124566788888555555443      2578899987 888777754322 3555553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.40  E-value=1.6e-09  Score=103.30  Aligned_cols=244  Identities=13%  Similarity=0.066  Sum_probs=156.6

Q ss_pred             EEEEeeCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEecC--------CeeEEEeeccCCCCccEEEEEe-C
Q 013545          108 SAIWYPVDTGLFVTGS----------YDHYVKVWDTNCTRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGT-E  168 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs----------~D~~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~las~s-~  168 (441)
                      .+.++| |+++++.+.          .+++|.+||+.+.+.+..+...        .....+.++|++.   .|+++. .
T Consensus        70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~---~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA---DLLFFQFA  145 (373)
T ss_pred             CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC---EEEEEecC
Confidence            456666 788777764          4788999999998888877654        1234567777643   444444 2


Q ss_pred             -CCcEEEEECCCCceeee-ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545          169 -DVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (441)
Q Consensus       169 -d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (441)
                       ++.|.++| ++++.+.. +.-.    .++.+.|+++..+++.+.||++.++|. +++..........            
T Consensus       146 ~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~------------  207 (373)
T 2mad_H          146 AGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM------------  207 (373)
T ss_pred             CCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc------------
Confidence             57899999 99998777 5422    235667777667788889999999998 6653321100000            


Q ss_pred             ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEeecC
Q 013545          247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAGSD  325 (441)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~D  325 (441)
                                                                           . ....+ .....+.+++..++-.+..
T Consensus       208 -----------------------------------------------------~-~~~~p~~~~~~~~~~~~~~~~~~~~  233 (373)
T 2mad_H          208 -----------------------------------------------------L-TAAQNLLTQPAQANKSGRIVWPVYS  233 (373)
T ss_pred             -----------------------------------------------------c-cCCcceeecceeEecCCEEEEEcCC
Confidence                                                                 0 00000 1123455555443333467


Q ss_pred             CcEEEeeCCCCCceee-eeee-------EEeccCcceEEEeeCCCcEEEEeCC-----------CceEEEEccCCceEee
Q 013545          326 SRIRLWDVESGRNTLV-NFET-------VRLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLT  386 (441)
Q Consensus       326 ~~i~~wd~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~wd~~~~~~~~~  386 (441)
                      +++.+.|+.+...... .+..       ..........+.+++++..+++...           ..+-++|..+++...+
T Consensus       234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~  313 (373)
T 2mad_H          234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ  313 (373)
T ss_pred             ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence            7888888875432111 1100       0011122233677888888877542           3688999999999888


Q ss_pred             ecccccceEEEEEcCCCC-eEEEee-cCCcEEEeCCCCCCCCCc
Q 013545          387 FRGHYEYVNCCCFSSQDQ-ELYTGG-NDRQILVWCPSRHISDGV  428 (441)
Q Consensus       387 l~gh~~~v~~v~fspd~~-~l~s~s-~D~~i~vW~~~~~~~~~~  428 (441)
                      +..- ...++++|+|||+ .++++. .+++|.++|..+++....
T Consensus       314 i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          314 ISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            8533 3589999999999 778777 489999999999885544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.39  E-value=7.4e-11  Score=110.60  Aligned_cols=234  Identities=12%  Similarity=0.097  Sum_probs=150.9

Q ss_pred             eEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                      .++.+.+ ++..+++.+.++.++.|.   +.....+.. ......+.+.++   ..+++++..++.|.+||.++++....
T Consensus         9 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            9 PTLFYSG-KSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQ---GQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             CBCCSCG-GGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTT---SCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             ceeeecC-CccceeEEeecccCcccc---cceeEEEeccCccccCcEECCC---CCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            3444444 344555567788999992   344443332 233456666654   34677778889999999998886655


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecC----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP  261 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~D----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (441)
                      ...+...+.+++++|+++ ++++...+    +.|.+||...+.....+..                              
T Consensus        82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------  130 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIED------------------------------  130 (333)
T ss_dssp             EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECS------------------------------
T ss_pred             eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEcc------------------------------
Confidence            545678899999999987 56666555    6899998765422111100                              


Q ss_pred             CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec------CCcEEEeeCCC
Q 013545          262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS------DSRIRLWDVES  335 (441)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~------D~~i~~wd~~~  335 (441)
                                                             ..+...+.+++++|+|..+++...      .+.|..+|..+
T Consensus       131 ---------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          131 ---------------------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             ---------------------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             ---------------------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence                                                   001134788999999998887654      35566666655


Q ss_pred             CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccC-CceEe--------eecccccceEEEEEcCCCC
Q 013545          336 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWS-GKTCL--------TFRGHYEYVNCCCFSSQDQ  404 (441)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~-~~~~~--------~l~gh~~~v~~v~fspd~~  404 (441)
                      ++...  +   ......+..+++++++..+++..  ...+.+|++.+ +..+.        .+.++ ..+..++++++|+
T Consensus       172 ~~~~~--~---~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~  245 (333)
T 2dg1_A          172 RTVTP--I---IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN  245 (333)
T ss_dssp             CCEEE--E---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC
T ss_pred             CEEEE--e---ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC
Confidence            43211  1   11123455678899988665543  35799999863 43332        22333 4678999999999


Q ss_pred             eEEEeecCCcEEEeCCCCC
Q 013545          405 ELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       405 ~l~s~s~D~~i~vW~~~~~  423 (441)
                      .+++...++.|.+|++...
T Consensus       246 l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          246 LYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             EEEEEETTTEEEEECTTSC
T ss_pred             EEEEEcCCCEEEEECCCCC
Confidence            8888878899999998543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.38  E-value=5.2e-11  Score=123.79  Aligned_cols=243  Identities=11%  Similarity=0.135  Sum_probs=151.6

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCC-----cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDS-----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      +|...+..++||| ++++||.++.++     +|++||+.+++...          .. .      .+ ..+..+.|+| |
T Consensus       122 ~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~----------~~-~------~~-~~~~~~~wsp-D  181 (710)
T 2xdw_A          122 DGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELP----------DV-L------ER-VKFSCMAWTH-D  181 (710)
T ss_dssp             TSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEE----------EE-E------EE-ECSCCEEECT-T
T ss_pred             CCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCc----------cc-c------cC-cccceEEEEe-C
Confidence            4555788999997 577887666544     89999998765311          00 0      01 1244577876 8


Q ss_pred             CCEEEEEeCCCc----------------EEEEECCCCeE--EEEEec---CCeeEEEeeccCCCCccEEEEEeC-----C
Q 013545          116 TGLFVTGSYDHY----------------VKVWDTNCTRV--VMNFKM---PGKVYRTAMSPLAASHMLIAAGTE-----D  169 (441)
Q Consensus       116 ~~~l~sgs~D~~----------------i~iWd~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~las~s~-----d  169 (441)
                      ++.|+.++.|+.                |.+|++.++..  ...+..   ........+++++.   .|+.++.     +
T Consensus       182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~---~l~~~~~~~~~~~  258 (710)
T 2xdw_A          182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR---YVLLSIREGCDPV  258 (710)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC---EEEEEEECSSSSC
T ss_pred             CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC---EEEEEEEccCCCc
Confidence            889998888876                99999988762  222232   22356777888653   3433332     5


Q ss_pred             CcEEEEECCC------Cc-eeeeecCCCCCeEEEEEecCCCcEEEEeecC---CcEEEEEcCCCce--eeEeccCCcccc
Q 013545          170 VQVRLCDIAS------GA-ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRRAGC--FRVLDQSQSQLG  237 (441)
Q Consensus       170 ~~I~vwdl~~------~~-~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D---g~I~iWD~~~~~~--~~~~~~~~~~~~  237 (441)
                      ..|++||+.+      +. ....+..+...+.. .|+|+++.+++.+..+   +.|.+||+.++..  ...         
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~---------  328 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV---------  328 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---------
T ss_pred             cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee---------
Confidence            7899999987      53 35666677766655 4888888766555433   3688888764310  000         


Q ss_pred             CCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec--cCeEEEEEccC
Q 013545          238 RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKVTED  315 (441)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~d  315 (441)
                                                                                    +..|.  ..+.+++|+++
T Consensus       329 --------------------------------------------------------------l~~~~~~~~~~~~~~~~~  346 (710)
T 2xdw_A          329 --------------------------------------------------------------LVPEHEKDVLEWVACVRS  346 (710)
T ss_dssp             --------------------------------------------------------------EECCCSSCEEEEEEEETT
T ss_pred             --------------------------------------------------------------ccCCCCCCeEEEEEEEcC
Confidence                                                                          01111  24677889888


Q ss_pred             CCEEEEeecCCc--EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe-CC----CceEEEEccCCc
Q 013545          316 GMYLLSAGSDSR--IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CM----TAVKAFDIWSGK  382 (441)
Q Consensus       316 g~~l~sgs~D~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~wd~~~~~  382 (441)
                      +.++++...|+.  |++||+.+++..    ..+.........+++++++..++.. ..    ..+..||+.+++
T Consensus       347 ~~lv~~~~~~g~~~l~~~~~~~g~~~----~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          347 NFLVLCYLHDVKNTLQLHDLATGALL----KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEE----EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCEEEEEEEECCCCCEE----EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888999999985  556677555421    1222222333445667777655433 22    368889998877

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.38  E-value=2.8e-10  Score=118.92  Aligned_cols=244  Identities=12%  Similarity=0.028  Sum_probs=142.8

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-----
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----  170 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-----  170 (441)
                      +|...+....|+| |+++||.++.+     .+|++||+.+++.+...........+.|+++ .   .|+.++.+.     
T Consensus       160 ~~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-S---EEEEEECCCC----
T ss_pred             CCCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-C---EEEEEEecCccccc
Confidence            4555677788886 88888877654     4699999999987543211111234567765 2   444444443     


Q ss_pred             ---------cEEEEECCCCce----eeeecCCCCCeEEEEEecCCCcEEEEeec----CCcEEEEEcCCC--ceeeEecc
Q 013545          171 ---------QVRLCDIASGAI----SQTLSGHRDGIMTVEWSTSSEWILVTGGC----DGAIRFWDIRRA--GCFRVLDQ  231 (441)
Q Consensus       171 ---------~I~vwdl~~~~~----~~~l~~h~~~v~~v~fsp~~~~~l~s~s~----Dg~I~iWD~~~~--~~~~~~~~  231 (441)
                               .|++|++.++..    +....+|...+..+.|+|+|+++++++..    ...|.+||+.++  .+...+  
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--  312 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL--  312 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE--
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe--
Confidence                     399999988762    22233444568899999999976544432    347899988653  101111  


Q ss_pred             CCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE
Q 013545          232 SQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK  311 (441)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  311 (441)
                                                                                           ..+...+... 
T Consensus       313 ---------------------------------------------------------------------~~~~~~~~~~-  322 (741)
T 1yr2_A          313 ---------------------------------------------------------------------IPDLKAQWDF-  322 (741)
T ss_dssp             ---------------------------------------------------------------------ECSSSSCEEE-
T ss_pred             ---------------------------------------------------------------------cCCCCceEEE-
Confidence                                                                                 0011112222 


Q ss_pred             EccCCCEEEEeec----CCcEEEeeCCCCCceeeeeeeEEeccCcce-EEEeeCCCcEEEEeC-CCceEEEEcc-CCceE
Q 013545          312 VTEDGMYLLSAGS----DSRIRLWDVESGRNTLVNFETVRLQTSKPI-QLATTQDPAVVFVPC-MTAVKAFDIW-SGKTC  384 (441)
Q Consensus       312 ~s~dg~~l~sgs~----D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~wd~~-~~~~~  384 (441)
                      ++|+|..|+..+.    ++.|.+||+.++...   ...+.......+ .+.+. ++.++++.. ....++|.+. +++..
T Consensus       323 ~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~  398 (741)
T 1yr2_A          323 VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR---FDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA  398 (741)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEECSSSSCE---EEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCccc---cEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence            3488888777665    345999998874200   111111111122 23333 344444433 2344555443 56666


Q ss_pred             eeecc-cccceEEEEEcCCCCeEE----EeecCCcEEEeCCCCCCC
Q 013545          385 LTFRG-HYEYVNCCCFSSQDQELY----TGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       385 ~~l~g-h~~~v~~v~fspd~~~l~----s~s~D~~i~vW~~~~~~~  425 (441)
                      ..+.. +.+.|..++++||++.|+    +....++|.+|++.++..
T Consensus       399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          399 GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            66765 367799999999998766    334457899999987664

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.38  E-value=3.5e-10  Score=103.30  Aligned_cols=185  Identities=13%  Similarity=0.126  Sum_probs=128.6

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 013545           55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTGSYDHYVKVWDT  133 (441)
Q Consensus        55 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~  133 (441)
                      .+++|++++.|+.|++||.++++..            ....     .+. ..+.++.+.| ++++++  +.++.|..||.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~------------w~~~-----~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~   63 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV------------WEYP-----LEKGWECNSVAATK-AGEILF--SYSKGAKMITR   63 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE------------EEEE-----CCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE------------EEeC-----CCccCCCcCeEECC-CCCEEE--eCCCCEEEECC
Confidence            3679999999999999998777531            1111     111 2355666666 788888  45889999999


Q ss_pred             CCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeC-CCcEEEEECCCCceeeeec------CCCCCeEEEEEecCCCc
Q 013545          134 NCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLS------GHRDGIMTVEWSTSSEW  204 (441)
Q Consensus       134 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~-d~~I~vwdl~~~~~~~~l~------~h~~~v~~v~fsp~~~~  204 (441)
                       +++.+..+..+  ..+....+.+++   .++++.+. ++.|..+|. +|+.+..+.      ++......+++.+++. 
T Consensus        64 -~G~~~W~~~~~~~~~~~~~~~~~dG---~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-  137 (276)
T 3no2_A           64 -DGRELWNIAAPAGCEMQTARILPDG---NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-  137 (276)
T ss_dssp             -TSCEEEEEECCTTCEEEEEEECTTS---CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-
T ss_pred             -CCCEEEEEcCCCCccccccEECCCC---CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-
Confidence             89988888764  245555555543   35666555 677877886 677665543      2223455677889987 


Q ss_pred             EEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCC
Q 013545          205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS  284 (441)
Q Consensus       205 ~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (441)
                      ++++...++.|..||.. ++.+-.+..                                                     
T Consensus       138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~-----------------------------------------------------  163 (276)
T 3no2_A          138 YLVPLFATSEVREIAPN-GQLLNSVKL-----------------------------------------------------  163 (276)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEEEC-----------------------------------------------------
T ss_pred             EEEEecCCCEEEEECCC-CCEEEEEEC-----------------------------------------------------
Confidence            56888889999999986 654332210                                                     


Q ss_pred             cccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545          285 VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                         ...+.++.+.++|..+++++.+++|..+|..+++.
T Consensus       164 -------------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          164 -------------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             -------------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             -------------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence                               01234567789999999999999999999998874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.37  E-value=2.5e-10  Score=104.53  Aligned_cols=203  Identities=13%  Similarity=0.183  Sum_probs=135.3

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-------CeeEEEeeccCCCCccEEEEEeC-CCcE
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-------GKVYRTAMSPLAASHMLIAAGTE-DVQV  172 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~las~s~-d~~I  172 (441)
                      +|-..+.++++.+ ++.++++...++.|++||.. +..+..+...       .....+++..  .+..++++... ++.|
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR--NSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET--TTTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc--CCCeEEEEcCCCCCEE
Confidence            4555677777775 67788888899999999987 5555555421       1344555522  12345555433 7899


Q ss_pred             EEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545          173 RLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG  251 (441)
Q Consensus       173 ~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (441)
                      .+|| .+++.+..+. .+...+.+++++|+++ ++++...++.|.+||.. ++.+..+..                    
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~--------------------  159 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGC--------------------  159 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEEC--------------------
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCC--------------------
Confidence            9999 5677666664 3456789999999986 67777778999999954 222211100                    


Q ss_pred             ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545          252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  331 (441)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w  331 (441)
                                                                       ..+...+.+|+++|+|+.+++.+.+++|++|
T Consensus       160 -------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  190 (286)
T 1q7f_A          160 -------------------------------------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVF  190 (286)
T ss_dssp             -------------------------------------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred             -------------------------------------------------CCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence                                                             0112347889999999988888889999999


Q ss_pred             eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545          332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                      |.....  .   ....                                       ..++...+..++++|+|+.+++...
T Consensus       191 ~~~g~~--~---~~~~---------------------------------------~~g~~~~p~~i~~d~~G~l~v~~~~  226 (286)
T 1q7f_A          191 NYEGQY--L---RQIG---------------------------------------GEGITNYPIGVGINSNGEILIADNH  226 (286)
T ss_dssp             ETTCCE--E---EEES---------------------------------------CTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             cCCCCE--E---EEEc---------------------------------------cCCccCCCcEEEECCCCCEEEEeCC
Confidence            974311  0   0000                                       0122345788899999888888777


Q ss_pred             CC-cEEEeCCCCC
Q 013545          412 DR-QILVWCPSRH  423 (441)
Q Consensus       412 D~-~i~vW~~~~~  423 (441)
                      ++ .|++|+....
T Consensus       227 ~~~~i~~~~~~g~  239 (286)
T 1q7f_A          227 NNFNLTIFTQDGQ  239 (286)
T ss_dssp             SSCEEEEECTTSC
T ss_pred             CCEEEEEECCCCC
Confidence            75 8999986543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.37  E-value=3e-11  Score=125.34  Aligned_cols=250  Identities=12%  Similarity=0.087  Sum_probs=150.5

Q ss_pred             CCCCceeEEEccCCCCcEEE-----EeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           41 PHKGSINSLQVDLTEERYLL-----SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~-----s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      +|...+.+++||| ++++||     +|+.+.+|++||+.+++.... .              ...+.+  ...+.|+| |
T Consensus       118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~--------------~~~~~~--~~~~~wsp-D  178 (695)
T 2bkl_A          118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-D--------------VIEGGK--YATPKWTP-D  178 (695)
T ss_dssp             SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-C--------------CBSCCT--TCCCEECT-T
T ss_pred             CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCC-c--------------ccCccc--ccceEEec-C
Confidence            4666799999997 577887     666678999999987753200 0              000111  13467776 7


Q ss_pred             CCEEEEEeCCCc-------------EEEEECCCCeE--EEEEec---CCeeEEEeeccCCCCccEEEEEeCCC----cEE
Q 013545          116 TGLFVTGSYDHY-------------VKVWDTNCTRV--VMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDV----QVR  173 (441)
Q Consensus       116 ~~~l~sgs~D~~-------------i~iWd~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~----~I~  173 (441)
                      ++.|+.++.|..             |++|++.++..  ...+..   ...+....+++++.   .|+.++.++    .|.
T Consensus       179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK---YLFVYILRGWSENDVY  255 (695)
T ss_dssp             SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC---CEEEEEEETTTEEEEE
T ss_pred             CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC---EEEEEEeCCCCceEEE
Confidence            889999999877             99999988762  223332   23466777888653   344333333    677


Q ss_pred             EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEee---cCCcEEEEEcCCCce--eeEeccCCccccCCCCccccccc
Q 013545          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGC--FRVLDQSQSQLGRRPPLLKRKSL  248 (441)
Q Consensus       174 vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s---~Dg~I~iWD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  248 (441)
                      +||..+++. ..+..+...+....+ ++++ +++++.   .++.|.+||+.++..  ...+                   
T Consensus       256 ~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-------------------  313 (695)
T 2bkl_A          256 WKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI-------------------  313 (695)
T ss_dssp             EECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE-------------------
T ss_pred             EEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE-------------------
Confidence            887766653 445556666666666 6666 666655   357899998765321  0000                   


Q ss_pred             ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee-ccCeEEEEEccCCCEEEEeecCCc
Q 013545          249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSDSR  327 (441)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~  327 (441)
                                                                         ...+ ...+.+++|+ ++..+++...|+.
T Consensus       314 ---------------------------------------------------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          314 ---------------------------------------------------VPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             ---------------------------------------------------ECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             ---------------------------------------------------ecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence                                                               0001 2236677887 7778899999999


Q ss_pred             EEEeeCC-CCCceeeeeeeEEec-cCcceEEEeeCCCcEEEEeCC-----CceEEEEccCCceEeeecccc
Q 013545          328 IRLWDVE-SGRNTLVNFETVRLQ-TSKPIQLATTQDPAVVFVPCM-----TAVKAFDIWSGKTCLTFRGHY  391 (441)
Q Consensus       328 i~~wd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~wd~~~~~~~~~l~gh~  391 (441)
                      .+||.+. .++.    ...+.+. ......+++++++..++....     ..+.+||+.+++. ..+..+.
T Consensus       342 ~~l~~~~~~g~~----~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~~~  407 (695)
T 2bkl_A          342 SEVRVATLKGKP----VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAKVD  407 (695)
T ss_dssp             EEEEEEETTCCE----EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEECC
T ss_pred             EEEEEEeCCCCe----eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEecCC
Confidence            8888654 2321    1111111 112223455677765553321     3688999988763 3444443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=1.3e-09  Score=100.84  Aligned_cols=238  Identities=11%  Similarity=0.154  Sum_probs=147.8

Q ss_pred             eeEEEEeeCCCCEEEE-------EeCCCcEEEEECCCCeEEEEEe-----cCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545          106 ISSAIWYPVDTGLFVT-------GSYDHYVKVWDTNCTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus       106 V~~~~~~~~~~~~l~s-------gs~D~~i~iWd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      ..++++. +++.++++       +..++.|.+||..+++......     ....+..+.+.++.  ..++++ .....|.
T Consensus        20 ~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--g~l~v~-~~~~~l~   95 (314)
T 1pjx_A           20 AEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA--NQLFVA-DMRLGLL   95 (314)
T ss_dssp             CEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS--SEEEEE-ETTTEEE
T ss_pred             ccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC--CcEEEE-ECCCCEE
Confidence            3456776 46777777       6778999999988877543221     11335556665531  234443 3345799


Q ss_pred             EEECCCCceeee-ecC----CCCCeEEEEEecCCCcEEEEeecC---------------CcEEEEEcCCCceeeEeccCC
Q 013545          174 LCDIASGAISQT-LSG----HRDGIMTVEWSTSSEWILVTGGCD---------------GAIRFWDIRRAGCFRVLDQSQ  233 (441)
Q Consensus       174 vwdl~~~~~~~~-l~~----h~~~v~~v~fsp~~~~~l~s~s~D---------------g~I~iWD~~~~~~~~~~~~~~  233 (441)
                      +||.+ ++.... ...    +...+.++++.|++. ++++...+               +.|..||.. +....      
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~------  166 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ------  166 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE------
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEE------
Confidence            99998 765433 221    123578999999986 55555443               233333322 11000      


Q ss_pred             ccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc
Q 013545          234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT  313 (441)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  313 (441)
                                                                                        ...+......++++
T Consensus       167 ------------------------------------------------------------------~~~~~~~~~~i~~~  180 (314)
T 1pjx_A          167 ------------------------------------------------------------------VDTAFQFPNGIAVR  180 (314)
T ss_dssp             ------------------------------------------------------------------EEEEESSEEEEEEE
T ss_pred             ------------------------------------------------------------------eccCCCCcceEEEe
Confidence                                                                              01122345788999


Q ss_pred             ----cCCCEE-EEeecCCcEEEeeCC-CCCceee-eeeeEEecc-CcceEEEeeCCCcEEEEe-CCCceEEEEccCCceE
Q 013545          314 ----EDGMYL-LSAGSDSRIRLWDVE-SGRNTLV-NFETVRLQT-SKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTC  384 (441)
Q Consensus       314 ----~dg~~l-~sgs~D~~i~~wd~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~  384 (441)
                          |+++.| ++...+++|.+||+. +++.... .+....... ..+..+++.+++.+.++. ....+..||..+++..
T Consensus       181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~  260 (314)
T 1pjx_A          181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK  260 (314)
T ss_dssp             ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS
T ss_pred             cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe
Confidence                999654 555678999999986 3321110 111111111 345567788888776664 4468999999878877


Q ss_pred             eeecccccceEEEEEcCCCCeE-EEeecCCcEEEeCCCC
Q 013545          385 LTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILVWCPSR  422 (441)
Q Consensus       385 ~~l~gh~~~v~~v~fspd~~~l-~s~s~D~~i~vW~~~~  422 (441)
                      ..+..+...+.+++|+|||++| ++...++.|..|++..
T Consensus       261 ~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          261 MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            7777777889999999999955 4555668899998864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.30  E-value=1.7e-09  Score=102.31  Aligned_cols=268  Identities=14%  Similarity=0.123  Sum_probs=167.5

Q ss_pred             CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe----------CCCcEEEEECC
Q 013545           65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS----------YDHYVKVWDTN  134 (441)
Q Consensus        65 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs----------~D~~i~iWd~~  134 (441)
                      ++.|.+.|..+.+...         .+- .      |.. +  .+.++| |+.+++.+.          .+++|.+||..
T Consensus        58 ~~~V~ViD~~t~~v~~---------~I~-v------G~~-P--~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIG---------MID-G------GFL-P--NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             SEEEEEEETTTTEEEE---------EEE-E------CSS-C--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCEEEEEECCCCeEEE---------EEE-C------CCC-C--cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            7899999998765310         111 1      111 1  256666 777776554          46789999999


Q ss_pred             CCeEEEEEecCC--------eeEEEeeccCCCCccEEEEEe-CCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE
Q 013545          135 CTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGT-EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI  205 (441)
Q Consensus       135 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~las~s-~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~  205 (441)
                      +.+.+..+..+.        ....+.+++++.  .++++.. .++.|.++|+++++.+.++.-..    |....|.+...
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~  191 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDT  191 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCce
Confidence            999988887543        234567777653  3333332 36899999999999888875321    22233555445


Q ss_pred             EEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCC
Q 013545          206 LVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS  284 (441)
Q Consensus       206 l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (441)
                      +++.+.||++-+.++.. ++.....   ...+                                                
T Consensus       192 ~~~~~~DG~~~~v~~~~~g~v~~~~---~~~~------------------------------------------------  220 (386)
T 3sjl_D          192 FFMHCRDGSLAKVAFGTEGTPEITH---TEVF------------------------------------------------  220 (386)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEE---CCCC------------------------------------------------
T ss_pred             eEEECCCCCEEEEECCCCCeEEEee---ccee------------------------------------------------
Confidence            67888999999999875 3211000   0000                                                


Q ss_pred             cccccCCCcccccccceeeccCe-EEEEE-ccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE----------eccCc
Q 013545          285 VRQRLHPGMLSSQDRATAHYGAV-TGLKV-TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR----------LQTSK  352 (441)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~h~~~v-~~l~~-s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~----------~~~~~  352 (441)
                           ...           ..++ ....| .++|+++. .+.+++|.+.|+.+......  ....          .....
T Consensus       221 -----~~~-----------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~--~~~~~~~~~~~~~g~~p~g  281 (386)
T 3sjl_D          221 -----HPE-----------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL--PAVEALTEAERADGWRPGG  281 (386)
T ss_dssp             -----SCT-----------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC--CCEESSCHHHHHTTEEECS
T ss_pred             -----ccc-----------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee--cceeccccccccccccCCC
Confidence                 000           0000 01244 36776544 44578999999976543211  1111          11223


Q ss_pred             ceEEEeeCCCcEEEEeC-----------CCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEE-eecCCcEEEeC
Q 013545          353 PIQLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYT-GGNDRQILVWC  419 (441)
Q Consensus       353 ~~~~~~~~~~~~~~~~~-----------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s-~s~D~~i~vW~  419 (441)
                      ...+++++++..+++..           ...+-++|..+++.+.++..- ..++.|+|+||++ +|++ ...+++|.++|
T Consensus       282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred             cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            33466788888888763           146888999999998887643 3689999999997 6665 45589999999


Q ss_pred             CCCCCCCCcc
Q 013545          420 PSRHISDGVD  429 (441)
Q Consensus       420 ~~~~~~~~~~  429 (441)
                      ..+++.....
T Consensus       361 ~~t~k~~~~i  370 (386)
T 3sjl_D          361 AESGEELRSV  370 (386)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCcEEEEe
Confidence            9998855433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=5.6e-09  Score=96.32  Aligned_cols=224  Identities=13%  Similarity=0.155  Sum_probs=143.5

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      ...|.+.++.++++...++.|..||..++.. ..+..+..+..+.+.+++.   ++++ . +..|.+||.++++......
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~---l~v~-~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGG---YVAT-I-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSS---EEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCC---EEEE-E-CCeEEEEECCCCcEEEEEe
Confidence            4566665566777888899999999988765 4456667777788777542   4443 3 5689999999887543222


Q ss_pred             C----CCCCeEEEEEecCCCcEEEEeecC---------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          188 G----HRDGIMTVEWSTSSEWILVTGGCD---------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       188 ~----h~~~v~~v~fsp~~~~~l~s~s~D---------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      .    ....+..++++|+++ ++++...+         ...++|.+.......                           
T Consensus        91 ~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---------------------------  142 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVK---------------------------  142 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE---------------------------
T ss_pred             cCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEE---------------------------
Confidence            1    123478899999987 45543222         223444432110000                           


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDV  333 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~  333 (441)
                                                                  ....+....+.++|+||++.| ++.+.+++|.+||+
T Consensus       143 --------------------------------------------~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A          143 --------------------------------------------KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             --------------------------------------------EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             --------------------------------------------EEeeccccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence                                                        001122346789999999865 66677899999987


Q ss_pred             --CCCCcee-eeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEc-CCCCeEEE
Q 013545          334 --ESGRNTL-VNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQELYT  408 (441)
Q Consensus       334 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs-pd~~~l~s  408 (441)
                        .++.... ..+.........+..+++.+++.+.++.. ...+..||..+++.+..+..+...+++++|+ ||++.|+.
T Consensus       179 d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          179 DLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             CTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred             cCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence              4443211 01111111123456678888887665543 3569999999999999998887889999999 88887653


Q ss_pred             e
Q 013545          409 G  409 (441)
Q Consensus       409 ~  409 (441)
                      +
T Consensus       259 t  259 (297)
T 3g4e_A          259 T  259 (297)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.28  E-value=6.8e-09  Score=104.24  Aligned_cols=238  Identities=10%  Similarity=-0.023  Sum_probs=163.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC--CCceeeeecCCCCCe
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--SGAISQTLSGHRDGI  193 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~--~~~~~~~l~~h~~~v  193 (441)
                      +.++++...+++|.++|..+++.+..+........+.+++++.   ++.+++.|+.|.+||+.  +++.+..+.... ..
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr---~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P  242 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGR---YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA  242 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSC---EEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCC---EEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence            3466788889999999999999998888766667788888653   56677889999999996  787777776433 35


Q ss_pred             EEEEEe----cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          194 MTVEWS----TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       194 ~~v~fs----p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ..++|+    |++++++++.-.+++|.++|..+.+.+..+......                                  
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~----------------------------------  288 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT----------------------------------  288 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC----------------------------------
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc----------------------------------
Confidence            799999    699988888888899999998876655433210000                                  


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeecc-CeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG-AVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVR  347 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~~~~~~~  347 (441)
                                     ..            ....|.. .+..+.+++++.. +++...+++|.++|....+...  ...+.
T Consensus       289 ---------------~~------------~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~  339 (567)
T 1qks_A          289 ---------------YD------------EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEIS  339 (567)
T ss_dssp             ---------------TT------------TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEE
T ss_pred             ---------------cc------------cccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeee
Confidence                           00            0001222 4677888888664 5556677999999988654211  11111


Q ss_pred             eccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecc-----cccceEEEEEcCCCCeEE-Eee-cCCcEEEe
Q 013545          348 LQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRG-----HYEYVNCCCFSSQDQELY-TGG-NDRQILVW  418 (441)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~g-----h~~~v~~v~fspd~~~l~-s~s-~D~~i~vW  418 (441)
                       ....+....+++++.++++++.  ..+.++|..+++....+..     |.+.--.+ ++|+++.+. |.. .+++|.++
T Consensus       340 -~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi  417 (567)
T 1qks_A          340 -AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALI  417 (567)
T ss_dssp             -CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred             -ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence             1223345678899998887754  6799999999988766543     43322222 688866655 442 46899999


Q ss_pred             CCCC
Q 013545          419 CPSR  422 (441)
Q Consensus       419 ~~~~  422 (441)
                      +..+
T Consensus       418 d~~~  421 (567)
T 1qks_A          418 GTDP  421 (567)
T ss_dssp             ECCT
T ss_pred             cCCC
Confidence            8876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.27  E-value=3.6e-08  Score=90.22  Aligned_cols=276  Identities=8%  Similarity=0.056  Sum_probs=175.4

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .......+|++++ ++++.++...++.|.+||.. ++..          . +..     ..+...+..+.+.+ ++.+++
T Consensus        17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~----------~-~~~-----~~~~~~~~~i~~~~-~g~l~v   77 (300)
T 2qc5_A           17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIK----------E-FEV-----PTPDAKVMCLIVSS-LGDIWF   77 (300)
T ss_dssp             STTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE----------E-EEC-----SSTTCCEEEEEECT-TSCEEE
T ss_pred             CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceE----------E-EEC-----CCCCCcceeEEECC-CCCEEE
Confidence            3456789999986 57777777788999999976 3210          0 000     11223456666664 677777


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEE
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV  196 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v  196 (441)
                      +...++.|..+|.. ++. ..+..+   .....+.+.+.   ..+.++...++.|..+|.+ ++... .+......+.++
T Consensus        78 ~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i  151 (300)
T 2qc5_A           78 TENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLN---GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI  151 (300)
T ss_dssp             EETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECST---TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred             EecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCC---CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence            77678899999987 554 333332   33555555543   3355555557889999987 65442 234445678999


Q ss_pred             EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  276 (441)
Q Consensus       197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (441)
                      ++.++++ ++++...++.|..||. .+.... +..                                             
T Consensus       152 ~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~---------------------------------------------  183 (300)
T 2qc5_A          152 TLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPL---------------------------------------------  183 (300)
T ss_dssp             EECTTSS-EEEEETTTTEEEEECT-TCCEEE-EEC---------------------------------------------
T ss_pred             EECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeC---------------------------------------------
Confidence            9999987 6666666788999986 332111 000                                             


Q ss_pred             ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                              ..+...+.+++++++|...++....+.|.+||. +++...  +. .......+..+
T Consensus       184 ------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~-~~~~~~~~~~i  235 (300)
T 2qc5_A          184 ------------------------PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YD-IPTPNARPHAI  235 (300)
T ss_dssp             ------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EE-CSSTTCCEEEE
T ss_pred             ------------------------CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EE-CCCCCCCceEE
Confidence                                    001124678999999988887777788999998 433211  11 11122445677


Q ss_pred             EeeCCCcEEEEeCC-CceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          357 ATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       357 ~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ++.+++.+.++... ..+..++. +++... .+......+.+++++++|+.+++.. . .|..+++
T Consensus       236 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          236 TAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             EECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            88888876555533 67888888 454332 2344456689999999998777665 4 6666665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.27  E-value=2.1e-08  Score=91.74  Aligned_cols=234  Identities=12%  Similarity=0.057  Sum_probs=153.5

Q ss_pred             cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                      ..+.++.+.+ ++.++++...++.|.+||.. +... .+..   ...+..+.+.+.   ..+.++...++.|..||.+ +
T Consensus        15 ~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           15 TGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSD---GEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-S
T ss_pred             CCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCC---CCEEEeCCCCCeEEEECCC-C
Confidence            3456666665 67777776668899999988 5543 3332   234556666553   2355555557889999986 4


Q ss_pred             cee-eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          181 AIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       181 ~~~-~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                      +.. ..+..+...+.++++.|++. ++++...++.|..||. ++...... .                            
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~-~----------------------------  136 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYE-L----------------------------  136 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEE-C----------------------------
T ss_pred             cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEec-C----------------------------
Confidence            332 22233456789999999886 5666666788999987 33211000 0                            


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  339 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~  339 (441)
                                                               ..+...+.+++++++|..+++...++.|..||. +++..
T Consensus       137 -----------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A          137 -----------------------------------------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             -----------------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             -----------------------------------------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence                                                     001124678999999988888777889999998 55422


Q ss_pred             eeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEE
Q 013545          340 LVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILV  417 (441)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~v  417 (441)
                      .  + ........+..+++.+++.+.+... ...+..|+. +++... .+..+...+.+++++++|+.+++...++.|.+
T Consensus       175 ~--~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  250 (299)
T 2z2n_A          175 E--F-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGR  250 (299)
T ss_dssp             E--E-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             E--e-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence            1  1 0111123455677888887665553 467899998 666433 23445677999999999987777667888999


Q ss_pred             eCCC
Q 013545          418 WCPS  421 (441)
Q Consensus       418 W~~~  421 (441)
                      |++.
T Consensus       251 ~d~~  254 (299)
T 2z2n_A          251 LTSN  254 (299)
T ss_dssp             EETT
T ss_pred             ECCC
Confidence            9984

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.25  E-value=1.8e-09  Score=103.98  Aligned_cols=266  Identities=12%  Similarity=0.069  Sum_probs=170.2

Q ss_pred             CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe----------CCCcEEEEECCC
Q 013545           66 SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS----------YDHYVKVWDTNC  135 (441)
Q Consensus        66 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs----------~D~~i~iWd~~~  135 (441)
                      ++|.+.|..+.+...         .+- +      |. .+  .+.++| |+++++.+.          .++.|.++|..+
T Consensus        99 ~~VsVID~~t~~vv~---------~I~-v------G~-~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           99 TQQFVIDGSTGRILG---------MTD-G------GF-LP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             EEEEEEETTTTEEEE---------EEE-E------CS-SC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CeEEEEECCCCEEEE---------EEE-C------CC-CC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            799999998765321         111 1      11 11  456666 677666554          477999999999


Q ss_pred             CeEEEEEecC--------CeeEEEeeccCCCCccEEEEEe--CCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE
Q 013545          136 TRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI  205 (441)
Q Consensus       136 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~las~s--~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~  205 (441)
                      .+.+..+..+        .....+.+++++.   .+.++.  .++.|.+.|+++++.+.++.--.    +....|+++..
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk---~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~  231 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNK---NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTV  231 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTE
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCC---EEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcE
Confidence            9998888764        1233456676543   444443  36789999999999887776321    13455665556


Q ss_pred             EEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCc
Q 013545          206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV  285 (441)
Q Consensus       206 l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (441)
                      +++.+.||++-+.|+..++......   ..+                                               ..
T Consensus       232 ~v~~~~dG~~~~V~~~~~~v~~~~~---~~~-----------------------------------------------~v  261 (426)
T 3c75_H          232 FYMNCRDGSLARVDFADGETKVTNT---EVF-----------------------------------------------HT  261 (426)
T ss_dssp             EEEEETTSSEEEEECCTTCCEEEEC---CCC-----------------------------------------------SC
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEee---eee-----------------------------------------------cc
Confidence            7788889998888874432211000   000                                               00


Q ss_pred             ccccCCCcccccccceeeccC-eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe----------ccCcce
Q 013545          286 RQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL----------QTSKPI  354 (441)
Q Consensus       286 ~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~----------~~~~~~  354 (441)
                      .                 ..+ ...+.|++++..++..+..++|.+.|+........  .....          ......
T Consensus       262 ~-----------------~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~--~~~~~~~~~~i~~g~~p~g~~  322 (426)
T 3c75_H          262 E-----------------DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR--APIEALTEAERADDWRPGGWQ  322 (426)
T ss_dssp             T-----------------TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC--CCEESSCTTTGGGTEEECSSS
T ss_pred             C-----------------CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe--eeeeeccccccccccccCCce
Confidence            0                 000 11245788888766667788999999875432111  11110          011112


Q ss_pred             EEEeeCCCcEEEEeC-----------CCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEee-cCCcEEEeCCC
Q 013545          355 QLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGG-NDRQILVWCPS  421 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~-----------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~s-~D~~i~vW~~~  421 (441)
                      .+++++++..+++..           ...+-++|..+++.+.++..-. ..+.++|+|||+ +|+++. .+++|.|+|..
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            357788888777753           2469999999999998886433 489999999999 888777 58999999999


Q ss_pred             CCCCCCc
Q 013545          422 RHISDGV  428 (441)
Q Consensus       422 ~~~~~~~  428 (441)
                      +++....
T Consensus       402 t~kvv~t  408 (426)
T 3c75_H          402 TGEELRS  408 (426)
T ss_dssp             TCCEEEE
T ss_pred             CCCEEEE
Confidence            9986544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.21  E-value=1.1e-08  Score=98.89  Aligned_cols=244  Identities=12%  Similarity=0.091  Sum_probs=154.7

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEECCCCce
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCDIASGAI  182 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwdl~~~~~  182 (441)
                      ....+++.+ ++.++++...++.|++||+.++............. +++.+..   ..|+++..++  .|.+++..++..
T Consensus       132 ~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g---~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK---QRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS---SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC---CcEEEEecCCCceEEEEEcCCCce
Confidence            455677765 67777887788999999999887765544333333 6666643   2455555544  799999877654


Q ss_pred             eeee----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          183 SQTL----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       183 ~~~l----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      ...+    ..+...+.+++++|++..+++ +..++.|..||...+.. ..+....                         
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~-~~~~~~~-------------------------  259 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV-TLIKQLE-------------------------  259 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE-EEEEECC-------------------------
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE-EEEeccc-------------------------
Confidence            4344    324566789999995555555 56688999999875431 1110000                         


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCC
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                            ..+                 .....+...|+|+| ++.++++...+++|+.|+.....
T Consensus       260 ----------------------~~g-----------------~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~  300 (409)
T 3hrp_A          260 ----------------------LSG-----------------SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC  300 (409)
T ss_dssp             ----------------------CCS-----------------CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE
T ss_pred             ----------------------ccC-----------------CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE
Confidence                                  000                 00001123799999 47777788888999999976431


Q ss_pred             ceeeeee------eEE---eccCcceEEEeeCCCcEEEEeC-C-CceEEEEccCCceEeeeccc---------------c
Q 013545          338 NTLVNFE------TVR---LQTSKPIQLATTQDPAVVFVPC-M-TAVKAFDIWSGKTCLTFRGH---------------Y  391 (441)
Q Consensus       338 ~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~wd~~~~~~~~~l~gh---------------~  391 (441)
                      .......      .-.   .....|..+++.+++.+.++.. . ..++.|++.++. +.++.++               .
T Consensus       301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~  379 (409)
T 3hrp_A          301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATF  379 (409)
T ss_dssp             EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCB
T ss_pred             EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEe
Confidence            1110000      000   0023467788999998666654 3 578999977775 4555555               3


Q ss_pred             cceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          392 EYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       392 ~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      .....|+++|+|..+++-..++.|+.+++
T Consensus       380 ~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          380 NYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             SSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            46899999999888888888888887764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.21  E-value=4.8e-10  Score=106.53  Aligned_cols=143  Identities=15%  Similarity=0.108  Sum_probs=106.3

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----------VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~  173 (441)
                      .++.+++++ ...++++|+.| .+++|++++..           ......+++ +..++|  +   ..+|+++ .++.|+
T Consensus        39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d---~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H---GDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E---TTEEEEE-ESSEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C---CCEEEEE-cCCcEE
Confidence            466677776 56689999998 56669854322           223456677 888888  2   3467777 789999


Q ss_pred             EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       174 vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      +||+.+......+..|...+.++.+.+..   ++.++.||+|.+||+..+...                           
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~---------------------------  159 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTK---------------------------  159 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred             EEEchhhhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCccc---------------------------
Confidence            99998877666677788888888887653   677899999999999754211                           


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~  333 (441)
                                                                      .+...|++++|||+|  ++.|..||++++|+.
T Consensus       160 ------------------------------------------------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          160 ------------------------------------------------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAW  189 (388)
T ss_dssp             ------------------------------------------------EEEESEEEEEECSSE--EEEEETTSCEEEEEE
T ss_pred             ------------------------------------------------cccCCceEEEEcCCc--eEEEEcCCcEEEEcC
Confidence                                                            122459999999999  677999999999987


Q ss_pred             CCC
Q 013545          334 ESG  336 (441)
Q Consensus       334 ~~~  336 (441)
                      ...
T Consensus       190 ~~~  192 (388)
T 1xip_A          190 RNG  192 (388)
T ss_dssp             ETT
T ss_pred             CCc
Confidence            654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=2.6e-09  Score=100.80  Aligned_cols=274  Identities=10%  Similarity=0.054  Sum_probs=161.1

Q ss_pred             CceeEEEccCCCCcEEEEee--CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545           44 GSINSLQVDLTEERYLLSGA--SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s  121 (441)
                      .....+++++ +++++++..  .++.++||.+.++...      .. ..    ......+|-..+..+.+.+ ++.++++
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~------~~-p~----~~~~~~~~~~~p~gv~~d~-~g~L~v~   83 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI------PF-PP----QSGNAIITFDTVLGIKSDG-NGIVWML   83 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE------ES-CC----CCSSCCCCCSCEEEEEECS-SSEEEEE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee------cC-CC----cccCcccceeEeeEEEEcC-CCcEEEE
Confidence            6788999986 578888864  2344677766432210      00 00    0011224556777888876 4555554


Q ss_pred             EeC-----CCcEEEEECCCCeEEEEEecCC-------eeEEEeeccCCCCccEEEEEe---CCCcEEEEECCCCceeeee
Q 013545          122 GSY-----DHYVKVWDTNCTRVVMNFKMPG-------KVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTL  186 (441)
Q Consensus       122 gs~-----D~~i~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~las~s---~d~~I~vwdl~~~~~~~~l  186 (441)
                      -..     +..|.+||+.+++.+..+..+.       ....+.+.+.  ...+.++..   .++.|.+||+++++..+.+
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~--~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~  161 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI--HNFVYISDPAPDDKAALIRVDLQTGLAARVL  161 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT--TTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred             cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecC--CCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence            333     5789999999999877776532       2355666543  223445544   5789999999999877777


Q ss_pred             cCCCCCeE-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          187 SGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       187 ~~h~~~v~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      .+|..... ...|.+++. .+.+.+.|++++.|..                                             
T Consensus       162 ~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~~---------------------------------------------  195 (343)
T 2qe8_A          162 QGYPGIAPEDIDLVIDGV-PVQIGQPDGTVIRPHL---------------------------------------------  195 (343)
T ss_dssp             TTCTTTSCCSCCCEETTE-ECBEECTTSCEECCCC---------------------------------------------
T ss_pred             cCCCcccccccceeECCE-EEEeccCCCceeceec---------------------------------------------
Confidence            66543211 133444543 3444555555544421                                             


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC-cEEEeeCCC---CCc---
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-RIRLWDVES---GRN---  338 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-~i~~wd~~~---~~~---  338 (441)
                                                              .+..|+|+|||++|..+..++ ++..++...   +..   
T Consensus       196 ----------------------------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~  235 (343)
T 2qe8_A          196 ----------------------------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA  235 (343)
T ss_dssp             ----------------------------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred             ----------------------------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence                                                    146799999999887776665 444444221   100   


Q ss_pred             e-eeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcE
Q 013545          339 T-LVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQI  415 (441)
Q Consensus       339 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i  415 (441)
                      . ...+.. ......+.-+++.+++.+.++... ..+.+||..+++....... +.....+|+|.++++++++.+..+.+
T Consensus       236 ~~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          236 ELGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             HHHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             hhhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            0 000011 011234455778888876666533 6799999866664333322 24568999999999888887755544


Q ss_pred             EEeC
Q 013545          416 LVWC  419 (441)
Q Consensus       416 ~vW~  419 (441)
                      .+|.
T Consensus       315 ~~f~  318 (343)
T 2qe8_A          315 APLN  318 (343)
T ss_dssp             GGGB
T ss_pred             cccc
Confidence            4443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.19  E-value=6.3e-09  Score=94.08  Aligned_cols=237  Identities=13%  Similarity=0.047  Sum_probs=147.4

Q ss_pred             ceeEEEccCCCCcEEE-EeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           45 SINSLQVDLTEERYLL-SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ...+|++++ ++++++ +.+.++.|.+||..+....             ..    ...+...+.++++.+ ++.++++..
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~-------------~~----~~~~~~~p~~i~~~~-~g~l~v~~~   85 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-------------VL----PFNGLYQPQGLAVDG-AGTVYVTDF   85 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E-------------EC----CCCSCCSCCCEEECT-TCCEEEEET
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc-------------eE----eeCCcCCcceeEECC-CCCEEEEcC
Confidence            678899986 567777 6578899999987543210             00    011222345566765 566666665


Q ss_pred             CCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                       ++.|.+||....... .+...  .....+.+.+.+   .++++...++.|.+|+..+.........+...+.+++++|+
T Consensus        86 -~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g---~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~  160 (270)
T 1rwi_B           86 -NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQG---AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS  160 (270)
T ss_dssp             -TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTC---CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT
T ss_pred             -CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCC---CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC
Confidence             889999998765432 23222  345566666643   35666666788999987665443333334456789999999


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      ++ ++++...++.|.+||.........                                                     
T Consensus       161 g~-l~v~~~~~~~i~~~~~~~~~~~~~-----------------------------------------------------  186 (270)
T 1rwi_B          161 GN-VYVTDTDNNRVVKLEAESNNQVVL-----------------------------------------------------  186 (270)
T ss_dssp             CC-EEEEEGGGTEEEEECTTTCCEEEC-----------------------------------------------------
T ss_pred             CC-EEEEECCCCEEEEEecCCCceEee-----------------------------------------------------
Confidence            87 677777778999999764311000                                                     


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD  361 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (441)
                                        ...+...+.+|+++++|..+++...+++|.+||.........  .  ......+..+++.++
T Consensus       187 ------------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--~--~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          187 ------------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--P--FTGLNTPLAVAVDSD  244 (270)
T ss_dssp             ------------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--C--CCSCSCEEEEEECTT
T ss_pred             ------------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--c--cCCCCCceeEEECCC
Confidence                              000113467899999998888888899999999876432110  0  011234667888888


Q ss_pred             CcEEEEeCC-CceEEEEccCC
Q 013545          362 PAVVFVPCM-TAVKAFDIWSG  381 (441)
Q Consensus       362 ~~~~~~~~~-~~~~~wd~~~~  381 (441)
                      +.+.++... ..++++++...
T Consensus       245 g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          245 RTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CCEEEEEGGGTEEEEECCCGG
T ss_pred             CCEEEEECCCCEEEEEcCCCc
Confidence            875555433 57888876543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.15  E-value=1e-08  Score=106.17  Aligned_cols=244  Identities=12%  Similarity=0.115  Sum_probs=146.3

Q ss_pred             cCcccceeEEEEeeCCCCEEE-----EEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCC----
Q 013545          100 HGHKYAISSAIWYPVDTGLFV-----TGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTED----  169 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~-----sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d----  169 (441)
                      .+|...+..+.++| |+++||     +|+++.+|++||+.+++.+.. ...+. ...+.|+ ++.   .|+.++.+    
T Consensus       125 ~~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~---~l~y~~~~~~~~  198 (693)
T 3iuj_A          125 PDGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNE---GFFYSSYDKPDG  198 (693)
T ss_dssp             TTSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTT---EEEEEESSCCC-
T ss_pred             CCCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCC---EEEEEEecCccc
Confidence            35666777777776 888887     344457899999999986543 12111 2344566 442   34445544    


Q ss_pred             ---------CcEEEEECCCCce----eeeecC-CCCCeEEEEEecCCCcEEEEeecC---CcEEEEEcCCCc-eeeEecc
Q 013545          170 ---------VQVRLCDIASGAI----SQTLSG-HRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRRAG-CFRVLDQ  231 (441)
Q Consensus       170 ---------~~I~vwdl~~~~~----~~~l~~-h~~~v~~v~fsp~~~~~l~s~s~D---g~I~iWD~~~~~-~~~~~~~  231 (441)
                               ..|++|++.++..    +..... |...+.++.|+|++++++++.+.+   +.|.++|+.++. .+..+  
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l--  276 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV--  276 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE--
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE--
Confidence                     3499999988753    333344 556678999999999877766533   578888886531 11111  


Q ss_pred             CCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE
Q 013545          232 SQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK  311 (441)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  311 (441)
                                                                                           ..+....... 
T Consensus       277 ---------------------------------------------------------------------~~~~~~~~~~-  286 (693)
T 3iuj_A          277 ---------------------------------------------------------------------QGDLDADVSL-  286 (693)
T ss_dssp             ---------------------------------------------------------------------ECSSSSCEEE-
T ss_pred             ---------------------------------------------------------------------eCCCCceEEE-
Confidence                                                                                 0111222222 


Q ss_pred             EccCCCEE-EEeecC---CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCce
Q 013545          312 VTEDGMYL-LSAGSD---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKT  383 (441)
Q Consensus       312 ~s~dg~~l-~sgs~D---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~  383 (441)
                      ++++|..| +....|   ++|..+|+.++....  ...+..+.....  .+++++..++....    ..+++|++..+ .
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~  361 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH--WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-R  361 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-E
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-e
Confidence            55555544 344333   679999998764310  011111222222  67777776665432    25788888644 3


Q ss_pred             Eeeec-ccccceEEEEEcCCCCeEEEeecC----CcEEEeCCCCCCCC
Q 013545          384 CLTFR-GHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRHISD  426 (441)
Q Consensus       384 ~~~l~-gh~~~v~~v~fspd~~~l~s~s~D----~~i~vW~~~~~~~~  426 (441)
                      ...+. .+.+.+..+.++||++.|+-...+    ++|..|++.++...
T Consensus       362 ~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          362 VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            44443 345668888899998887754444    78999999877543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.14  E-value=6.9e-08  Score=90.22  Aligned_cols=222  Identities=12%  Similarity=0.064  Sum_probs=137.2

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      ...|.+.++.++++...++.|..||..+++.. .+..+..+..+.+.+++   .++++ .. ..|.+||.++++......
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg---~l~v~-~~-~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS---KQLIA-SD-DGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT---EEEEE-ET-TEEEEEETTTCCEEEEEC
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC---eEEEE-EC-CCEEEEECCCCcEEEEee
Confidence            34566644556777778899999999887643 44556667777777653   34443 33 349999998887543221


Q ss_pred             ---CC-CCCeEEEEEecCCCcEEEEeecC----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          188 ---GH-RDGIMTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       188 ---~h-~~~v~~v~fsp~~~~~l~s~s~D----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                         +. ...+..+.++|+++ ++++...+    +...||.+..++ +..+                              
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g~-~~~~------------------------------  174 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGK-VTKL------------------------------  174 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTE-EEEE------------------------------
T ss_pred             CCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCCc-EEEe------------------------------
Confidence               11 23578999999987 45544321    234444432221 1100                              


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCC--CC
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVE--SG  336 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~--~~  336 (441)
                                                               ..+......++|+|||+.| ++.+.+++|.+||+.  ++
T Consensus       175 -----------------------------------------~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          175 -----------------------------------------FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  213 (326)
T ss_dssp             -----------------------------------------EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             -----------------------------------------eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence                                                     0112235689999999865 455667899999986  44


Q ss_pred             -Ccee-eeeeeEEeccCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEc-CCCCeEEEe
Q 013545          337 -RNTL-VNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQELYTG  409 (441)
Q Consensus       337 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs-pd~~~l~s~  409 (441)
                       .... ..+.........+..+++.+++.+.+.. ....+..|+. +++.+..+..+...+.+++|+ ||++.|+.+
T Consensus       214 l~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          214 LPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             CBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             CcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence             3110 1111110012334556777888766554 3467999998 678888888777789999999 898776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.14  E-value=1.5e-09  Score=103.04  Aligned_cols=154  Identities=8%  Similarity=0.051  Sum_probs=102.8

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~  124 (441)
                      .++.|++++. ..++++|+.| .+++|+++........... .......      ..+.. |..+.|   |+.+|+.+ .
T Consensus        39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~-~~~~~~~------~~lp~-V~~l~f---d~~~L~v~-~  104 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDST-PLTFKWE------KEIPD-VIFVCF---HGDQVLVS-T  104 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSC-CCCCSEE------EECTT-EEEEEE---ETTEEEEE-E
T ss_pred             cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccc-cccceEE------eeCCC-eeEEEE---CCCEEEEE-c
Confidence            6999999964 5688899887 5566997643310000000 0001011      13445 888888   67888888 8


Q ss_pred             CCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545          125 DHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~  203 (441)
                      ++.|++||+.+....... .+...+..+.+.  .+   -+++++.||.+.+||++++....    +...|+|++|+|+| 
T Consensus       105 ~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~--~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-  174 (388)
T 1xip_A          105 RNALYSLDLEELSEFRTVTSFEKPVFQLKNV--NN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-  174 (388)
T ss_dssp             SSEEEEEESSSTTCEEEEEECSSCEEEEEEC--SS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-
T ss_pred             CCcEEEEEchhhhccCccceeecceeeEEec--CC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-
Confidence            899999998765432222 233445443332  22   27888999999999999887643    45689999999998 


Q ss_pred             cEEEEeecCCcEEEEEcCCCc
Q 013545          204 WILVTGGCDGAIRFWDIRRAG  224 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~~~  224 (441)
                        ++.|..||+|++|+.....
T Consensus       175 --~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          175 --LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             --EEEEETTSCEEEEEEETTE
T ss_pred             --eEEEEcCCcEEEEcCCCcc
Confidence              4678899999999876543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.11  E-value=5.8e-08  Score=89.75  Aligned_cols=225  Identities=14%  Similarity=0.143  Sum_probs=134.3

Q ss_pred             EEEEeeCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee
Q 013545          108 SAIWYPVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (441)
Q Consensus       108 ~~~~~~~~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l  186 (441)
                      ..+|.+ +++ ++++...++.|..|+. ++.........+.+..+.+.+++   .++++...++.|.+|+.+ ++.....
T Consensus        49 gp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG---~l~v~~~~~~~v~~~~~~-g~~~~~~  122 (305)
T 3dr2_A           49 GPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ---RLVHCEHGRRAITRSDAD-GQAHLLV  122 (305)
T ss_dssp             EEEEEG-GGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             CCeEeC-CCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC---CEEEEECCCCEEEEECCC-CCEEEEE
Confidence            456766 555 6778888899999998 45432222233445666666643   355554555789999986 5532221


Q ss_pred             ---cCC-CCCeEEEEEecCCCcEEEE----eec-------------CCcEEEEEcCCCceeeEeccCCccccCCCCcccc
Q 013545          187 ---SGH-RDGIMTVEWSTSSEWILVT----GGC-------------DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR  245 (441)
Q Consensus       187 ---~~h-~~~v~~v~fsp~~~~~l~s----~s~-------------Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (441)
                         .+. ...+..+.+.|++. +++|    |..             .+.|..||..+++..                   
T Consensus       123 ~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-------------------  182 (305)
T 3dr2_A          123 GRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-------------------  182 (305)
T ss_dssp             CEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-------------------
T ss_pred             eccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-------------------
Confidence               111 12356788888886 4555    221             122333332211100                   


Q ss_pred             cccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC
Q 013545          246 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD  325 (441)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  325 (441)
                                                                           ... .....+.++|+||++.|..+...
T Consensus       183 -----------------------------------------------------~~~-~~~~p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          183 -----------------------------------------------------RMA-DLDHPNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             -----------------------------------------------------EEE-EESSEEEEEECTTSSEEEEEECC
T ss_pred             -----------------------------------------------------EEe-cCCCCcceEEcCCCCEEEEEecC
Confidence                                                                 001 12345789999999977666554


Q ss_pred             ------CcEEEeeCCCCCceeeeeeeE-EeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEE
Q 013545          326 ------SRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC  398 (441)
Q Consensus       326 ------~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~  398 (441)
                            ++|++|++....  +...... ......+..+++.+++.+. +++...+.+|+. +++.+..+..+. .+.+++
T Consensus       209 ~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~gv~~~~~-~g~~~~~~~~~~-~~~~~~  283 (305)
T 3dr2_A          209 EQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGTGVCVFDS-DGQLLGHIPTPG-TASNCT  283 (305)
T ss_dssp             C---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSSEEEEECT-TSCEEEEEECSS-CCCEEE
T ss_pred             CcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEE-EecCCcEEEECC-CCCEEEEEECCC-ceeEEE
Confidence                  789999987543  1111111 1112334456777888844 444567899998 677777777665 589999


Q ss_pred             EcCCCCeEEEeecCCcEEE
Q 013545          399 FSSQDQELYTGGNDRQILV  417 (441)
Q Consensus       399 fspd~~~l~s~s~D~~i~v  417 (441)
                      |+|+++.|+.++.++..++
T Consensus       284 f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          284 FDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             ECTTSCEEEEEETTEEEEE
T ss_pred             EeCCCCEEEEEcCCeEEEE
Confidence            9999988887777765554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.11  E-value=1.1e-07  Score=87.86  Aligned_cols=247  Identities=15%  Similarity=0.122  Sum_probs=148.1

Q ss_pred             CCCceeEEEccCCCCcEEEE-------eeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           42 HKGSINSLQVDLTEERYLLS-------GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l~s-------~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ......+++|++ +++++++       +..++.|.+||..+++..           .+.  .....++...+..+.+.+ 
T Consensus        16 ~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-----------~~~--~~~~~~~~~~~~~i~~~~-   80 (314)
T 1pjx_A           16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VIC--KPEVNGYGGIPAGCQCDR-   80 (314)
T ss_dssp             CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEE--CCEETTEECCEEEEEECS-
T ss_pred             cCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-----------EEE--ecccCCCCCCCceEEEec-
Confidence            345678899985 5677777       678899999997655321           000  000113445577777765 


Q ss_pred             C-CCEEEEEeCCCcEEEEECCCCeEEEE-EecC-----CeeEEEeeccCCCCccEEEEEeCC---------------CcE
Q 013545          115 D-TGLFVTGSYDHYVKVWDTNCTRVVMN-FKMP-----GKVYRTAMSPLAASHMLIAAGTED---------------VQV  172 (441)
Q Consensus       115 ~-~~~l~sgs~D~~i~iWd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~las~s~d---------------~~I  172 (441)
                      + +.++++ +....|.+||.. ++.... ....     ..+..+.+.+.+   .+.++...+               +.|
T Consensus        81 ~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~l  155 (314)
T 1pjx_A           81 DANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG---NLWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             SSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS---CEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             CCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC---CEEEEecCcccccccccccccCCCCeE
Confidence            5 544444 444579999998 665432 2211     124556666542   344444433               467


Q ss_pred             EEEECCCCceeeeecCCCCCeEEEEEe----cCCCcEEEEeecCCcEEEEEcC-CCceeeEeccCCccccCCCCcccccc
Q 013545          173 RLCDIASGAISQTLSGHRDGIMTVEWS----TSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRPPLLKRKS  247 (441)
Q Consensus       173 ~vwdl~~~~~~~~l~~h~~~v~~v~fs----p~~~~~l~s~s~Dg~I~iWD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (441)
                      ..+|.+ ++... +..+......++|+    |+++.++++...++.|.+||+. .+.. .....                
T Consensus       156 ~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~-~~~~~----------------  216 (314)
T 1pjx_A          156 YCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-ENKKV----------------  216 (314)
T ss_dssp             EEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-EEEEE----------------
T ss_pred             EEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc-ccceE----------------
Confidence            777766 55433 33344556889999    9987666666678999999975 2211 00000                


Q ss_pred             cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec-cCeEEEEEccCCCEEEEeecCC
Q 013545          248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGSDS  326 (441)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~  326 (441)
                                                            ..           ....+. ..+..++++++|..+++...++
T Consensus       217 --------------------------------------~~-----------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          217 --------------------------------------WG-----------HIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             --------------------------------------EE-----------ECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             --------------------------------------EE-----------ECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence                                                  00           000111 3356799999999999888889


Q ss_pred             cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC--ceEEEEccC
Q 013545          327 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT--AVKAFDIWS  380 (441)
Q Consensus       327 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~wd~~~  380 (441)
                      .|.+||..+++..    .........+..+++.+++..++++...  .+..|++..
T Consensus       248 ~i~~~d~~~g~~~----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          248 HIEVFGPDGGQPK----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEECTTCBSCS----EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEcCCCCcEe----EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9999999865432    1122233456677888888866665443  777777643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.07  E-value=2.7e-07  Score=84.86  Aligned_cols=233  Identities=12%  Similarity=0.104  Sum_probs=141.9

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +..+..---+..|++.++.++++...++.|..||..++...           .+        .+...+.++++.+ ++.+
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~--------~~~~~~~~i~~~~-dG~l   67 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-----------RV--------TMDAPVSSVALRQ-SGGY   67 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------EE--------ECSSCEEEEEEBT-TSSE
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-----------EE--------eCCCceEEEEECC-CCCE
Confidence            33444455678888766778888889999999998754310           01        1223466777765 6765


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeC--------CCcEEEEECCC-Cceee
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTE--------DVQVRLCDIAS-GAISQ  184 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~--------d~~I~vwdl~~-~~~~~  184 (441)
                      +++.  +..|.+||..+++........     .....+.+.+++  ..++.+-..        .....+|.+.. ++. .
T Consensus        68 ~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~  142 (297)
T 3g4e_A           68 VATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K  142 (297)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred             EEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence            5543  568999999888754333321     224556666543  333332221        12345555543 333 2


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC--CCcee--eEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR--RAGCF--RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                      .+..+......++|+|+++.++++.+.++.|..||+.  ++...  +.+.                              
T Consensus       143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~------------------------------  192 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY------------------------------  192 (297)
T ss_dssp             EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE------------------------------
T ss_pred             EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE------------------------------
Confidence            2333445568999999998777777778999999874  22110  0000                              


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                                            ....+.+.+..++++++|.+.++...+++|..||..+++.. 
T Consensus       193 --------------------------------------~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~-  233 (297)
T 3g4e_A          193 --------------------------------------KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL-  233 (297)
T ss_dssp             --------------------------------------ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE-
T ss_pred             --------------------------------------ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE-
Confidence                                                  00011234668999999998888888899999999877632 


Q ss_pred             eeeeeEEeccCcceEEEee-CCCcEEEEe
Q 013545          341 VNFETVRLQTSKPIQLATT-QDPAVVFVP  368 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  368 (441)
                         ..+......+..+++. +++..+++.
T Consensus       234 ---~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          234 ---QTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             ---EEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             ---EEEECCCCCceEEEEeCCCCCEEEEE
Confidence               2223333456677776 676666554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.05  E-value=1.6e-08  Score=105.62  Aligned_cols=157  Identities=11%  Similarity=0.082  Sum_probs=95.2

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCC-----CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASD-----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      +|...+..++||| ++++|+.++.+     .+|++||+.+++...          . .       .+...+..+.|+| |
T Consensus       160 ~~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~----------~-~-------~~~~~~~~~~wsp-D  219 (741)
T 1yr2_A          160 DGATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLA----------D-E-------LKWVKFSGLAWLG-N  219 (741)
T ss_dssp             ---EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEE----------E-E-------EEEEESCCCEEST-T
T ss_pred             CCCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCC----------c-c-------CCCceeccEEEEC-C
Confidence            3445788999997 57778776654     469999998765311          0 0       0111123567776 6


Q ss_pred             CCEEEEEeCCCc--------------EEEEECCCCeE--EEEEecCC---eeEEEeeccCCCCccEEEEEeC-----CCc
Q 013545          116 TGLFVTGSYDHY--------------VKVWDTNCTRV--VMNFKMPG---KVYRTAMSPLAASHMLIAAGTE-----DVQ  171 (441)
Q Consensus       116 ~~~l~sgs~D~~--------------i~iWd~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~las~s~-----d~~  171 (441)
                       +.|+.++.|..              |.+|++.++..  ...+....   .+....+++++.   .|+..+.     +..
T Consensus       220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR---WVVITSSEGTDPVNT  295 (741)
T ss_dssp             -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC---EEEEEEECTTCSCCE
T ss_pred             -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC---EEEEEEEccCCCcce
Confidence             78887777654              89999977652  22333222   356777877643   3443332     348


Q ss_pred             EEEEECCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEeec---CCcEEEEEcCC
Q 013545          172 VRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGC---DGAIRFWDIRR  222 (441)
Q Consensus       172 I~vwdl~~~--~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~---Dg~I~iWD~~~  222 (441)
                      |++||++++  +....+..+...+.... +|+++.+++....   ++.|.+||+.+
T Consensus       296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          296 VHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            999999887  41455555555555553 4888865544332   34588888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.04  E-value=7.8e-07  Score=81.22  Aligned_cols=233  Identities=13%  Similarity=0.121  Sum_probs=151.0

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~  181 (441)
                      .+.++.+.+ ++.+.++...++.|.+||.. ++... +..+   ..+..+.+.+.   ..+.++...++.|..+|.+ ++
T Consensus        21 ~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           21 GPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSL---GDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-SC
T ss_pred             CcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCC---CCEEEEecCCCeEEEECCC-CC
Confidence            445566655 67777777778999999988 55433 3332   33555555543   2355555557789999988 65


Q ss_pred             ee-eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545          182 IS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA  260 (441)
Q Consensus       182 ~~-~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (441)
                      .. ..+......+.++++.+++. ++++...++.|..||.. ++... +..                             
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~-~~~-----------------------------  141 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYE-YDL-----------------------------  141 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEE-EEC-----------------------------
T ss_pred             eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEE-ccC-----------------------------
Confidence            43 22333446789999999886 56666667889888865 32110 000                             


Q ss_pred             CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545          261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                                              ......+.+++++++|+..++...++.|..+|. +++...
T Consensus       142 ----------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~  180 (300)
T 2qc5_A          142 ----------------------------------------PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE  180 (300)
T ss_dssp             ----------------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred             ----------------------------------------CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE
Confidence                                                    001124678999999998887777889999998 443211


Q ss_pred             eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                        +. .......+..+++.+++.+.++... ..+..++. +++... .+..+...+.+++++++|+..++...++.|.++
T Consensus       181 --~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  256 (300)
T 2qc5_A          181 --YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI  256 (300)
T ss_dssp             --EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             --ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence              11 0111234566777888876665543 46888888 555433 244456678999999999877777667899999


Q ss_pred             CCC
Q 013545          419 CPS  421 (441)
Q Consensus       419 ~~~  421 (441)
                      ++.
T Consensus       257 ~~~  259 (300)
T 2qc5_A          257 TND  259 (300)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            984

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.00  E-value=3e-08  Score=93.83  Aligned_cols=280  Identities=9%  Similarity=-0.036  Sum_probs=157.2

Q ss_pred             EEEEEeCCC----cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe----------CCCcEEEEECCCCcee
Q 013545          118 LFVTGSYDH----YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT----------EDVQVRLCDIASGAIS  183 (441)
Q Consensus       118 ~l~sgs~D~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s----------~d~~I~vwdl~~~~~~  183 (441)
                      .+++-..++    +|-+.|..+++.+.++...... .+.+++++.   .+.++.          .++.|.+||+.+++.+
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~---~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGS---DFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSS---CEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCC---EEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            344545455    8889999999999988865444 688888754   233332          3678999999999998


Q ss_pred             eeecCC-------CCCeEEEEEecCCCcEEEEeec-CCcEEE--EEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          184 QTLSGH-------RDGIMTVEWSTSSEWILVTGGC-DGAIRF--WDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       184 ~~l~~h-------~~~v~~v~fsp~~~~~l~s~s~-Dg~I~i--WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      .++.-+       ......+.|+|++++++++... +..|.+  +|+.+   ...+.....     ....     ...  
T Consensus       110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-----~~~~-----p~g--  174 (368)
T 1mda_H          110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-----FHIH-----PGA--  174 (368)
T ss_dssp             EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-----CCCE-----EEE--
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-----eEEc-----cCC--
Confidence            887533       1235689999999987655433 467888  99865   222211000     0000     000  


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~  333 (441)
                          .........++..+.+.... ...   ....+.. ...  .....-..+.   . ++++..++-.+. ++|.+.|+
T Consensus       175 ----~~~~~~~~~dg~~~~vd~~~-~~~---~~~~v~~-~~t--~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~  238 (368)
T 1mda_H          175 ----AATHYLGSCPASLAASDLAA-APA---AAGIVGA-QCT--GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDI  238 (368)
T ss_dssp             ----TTEEECCCCTTSCEEEECCS-SCC---CCEECCC-CSC--TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEEC
T ss_pred             ----CeEEEEEcCCCCEEEEECcc-ccc---cCCeEEE-Eee--eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEEC
Confidence                00000000111110000000 000   0000000 000  0000111233   3 555555555555 89999998


Q ss_pred             CCCCceeeeeeeEEe----------ccCcceEEEeeCCCcEEEEeC----------CCceEEEEccCCceEeeecccccc
Q 013545          334 ESGRNTLVNFETVRL----------QTSKPIQLATTQDPAVVFVPC----------MTAVKAFDIWSGKTCLTFRGHYEY  393 (441)
Q Consensus       334 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~wd~~~~~~~~~l~gh~~~  393 (441)
                      .+......  ....+          .......+++++++..+++..          ...+.++|..+++.+.++.... .
T Consensus       239 ~~~~~~v~--~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~  315 (368)
T 1mda_H          239 PAAGATMK--AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-D  315 (368)
T ss_dssp             CSSCCEEE--CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-E
T ss_pred             CCCcceEE--EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-C
Confidence            75432211  11000          011111257889988887652          2356799999999998887655 5


Q ss_pred             eEEEEEcCCCCe-EEEee-cCCcEEEeCCCCCCCC-CccCCccCC
Q 013545          394 VNCCCFSSQDQE-LYTGG-NDRQILVWCPSRHISD-GVDAGPMQD  435 (441)
Q Consensus       394 v~~v~fspd~~~-l~s~s-~D~~i~vW~~~~~~~~-~~~~~~~~~  435 (441)
                      .+.++|+|||++ +++.. .+++|.++|+.+.+.. .+..|+...
T Consensus       316 p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~  360 (368)
T 1mda_H          316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE  360 (368)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred             cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence            899999999985 56666 5999999999998844 343455443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.98  E-value=3.7e-07  Score=88.07  Aligned_cols=250  Identities=13%  Similarity=0.099  Sum_probs=145.6

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      .....|++++ +++++++...++.|++||..++...          .+.   .    .. .... +++.+ +++.|+.+.
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~----------~~~---~----~~-~~~~-ia~~~-~g~~l~~~d  189 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVT----------TVH---P----GF-KGGK-PAVTK-DKQRVYSIG  189 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEE----------EEE---E----TC-CBCB-CEECT-TSSEEEEEB
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEE----------Eee---c----cC-CCCc-eeEec-CCCcEEEEe
Confidence            4677899985 5777888888899999998754321          000   0    00 1112 45554 677888887


Q ss_pred             CCC--cEEEEECCCCeEEEEE----e-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee----ecCCCCC
Q 013545          124 YDH--YVKVWDTNCTRVVMNF----K-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT----LSGHRDG  192 (441)
Q Consensus       124 ~D~--~i~iWd~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~----l~~h~~~  192 (441)
                      .++  .|.+||...+.....+    . .......+++.+.  +..+++ +..++.|+.||++++.....    ..++...
T Consensus       190 ~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~--~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          190 WEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET--EEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             SSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT--SSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             cCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC--CCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            766  7888887665543333    1 1233455666653  223333 56678999999988764322    2233322


Q ss_pred             e-E-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          193 I-M-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       193 v-~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      - . .++|+|++..++++-..++.|+.||....  ...+-.....                                   
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~-----------------------------------  309 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ-----------------------------------  309 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTC-----------------------------------
T ss_pred             CccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC-----------------------------------
Confidence            2 3 99999965667788778899999986532  1111000000                                   


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeE---
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETV---  346 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~---  346 (441)
                                 .+..+..          ...+.......|+++|+|.++++-+ .+.+|+.|++.++....  +...   
T Consensus       310 -----------~g~~dg~----------~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~--~~g~~~~  366 (409)
T 3hrp_A          310 -----------KTVQDGL----------REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST--VAGQVDV  366 (409)
T ss_dssp             -----------CSCBCEE----------GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE--EEECTTC
T ss_pred             -----------CCcCCCc----------ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE--EeCCCCC
Confidence                       0000000          0011223467899999999888888 89999999977664211  1110   


Q ss_pred             E---------eccCcceEEEeeCCCcEEEEeCC-CceEEEE
Q 013545          347 R---------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFD  377 (441)
Q Consensus       347 ~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd  377 (441)
                      .         .....|..+++.+++.++++... ..++.+.
T Consensus       367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            0         00234667888888655554433 3455444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.96  E-value=7.1e-08  Score=99.83  Aligned_cols=158  Identities=14%  Similarity=0.179  Sum_probs=98.8

Q ss_pred             CCCCceeEEEccCCCCcEEE-----EeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           41 PHKGSINSLQVDLTEERYLL-----SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~-----s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      +|...+..++||| ++++||     +|+.+.+|++||+.+++...      .     ..       +......+.|+  |
T Consensus       126 ~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------~-----~~-------~~~k~~~~~Ws--D  184 (693)
T 3iuj_A          126 DGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLE------T-----PL-------KDVKFSGISWL--G  184 (693)
T ss_dssp             TSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEE------E-----EE-------EEEESCCCEEE--T
T ss_pred             CCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCc------c-----cc-------CCceeccEEEe--C
Confidence            4666788999997 577776     34445679999998875321      0     00       00001235566  7


Q ss_pred             CCEEEEEeCCCc-------------EEEEECCCCeE--EEEEecCC----eeEEEeeccCCCCccEEEEEe---CCCcEE
Q 013545          116 TGLFVTGSYDHY-------------VKVWDTNCTRV--VMNFKMPG----KVYRTAMSPLAASHMLIAAGT---EDVQVR  173 (441)
Q Consensus       116 ~~~l~sgs~D~~-------------i~iWd~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~las~s---~d~~I~  173 (441)
                      ++.|+.++.|..             |.+|++.++..  ...+....    ......+++++.  .++++..   .++.|+
T Consensus       185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~i~  262 (693)
T 3iuj_A          185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR--FLLISAANSTSGNRLY  262 (693)
T ss_dssp             TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC--EEEEEEESSSSCCEEE
T ss_pred             CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC--EEEEEEccCCCCcEEE
Confidence            888888887743             99999977642  23333332    245667777643  3444443   235899


Q ss_pred             EEECCCCc-eeeeecCCCCCeEEEEEecCCCcEEEEeecC---CcEEEEEcCC
Q 013545          174 LCDIASGA-ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRR  222 (441)
Q Consensus       174 vwdl~~~~-~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D---g~I~iWD~~~  222 (441)
                      ++|++++. ....+..+....... ++++++.+++.+..+   +.|..+|+.+
T Consensus       263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~  314 (693)
T 3iuj_A          263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN  314 (693)
T ss_dssp             EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            99998874 345666676666665 667777666666554   5677777764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.95  E-value=1.7e-07  Score=96.47  Aligned_cols=54  Identities=13%  Similarity=0.209  Sum_probs=45.0

Q ss_pred             CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +.+..||+.+++.+-.+. +..+++...+++++..++.++.|+.+++||..+++.
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence            468899999999887765 445567777888899999999999999999998874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.93  E-value=4.9e-07  Score=93.20  Aligned_cols=55  Identities=11%  Similarity=0.123  Sum_probs=44.7

Q ss_pred             CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      +.+..||+.+|+.+-.+..+. ++..-.++..+..++.|+.|+.++.||..+++..
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence            458899999999888776554 3444567778889999999999999999998843

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.92  E-value=2.4e-09  Score=102.07  Aligned_cols=204  Identities=10%  Similarity=0.029  Sum_probs=111.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC-e
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG-I  193 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~-v  193 (441)
                      +++++++++.|+.|..||..+|+.+..+.. +.+....+.   .+..++++++.|+.|+.||.++|+.+..++.+... +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~---~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTH---VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC--------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceE---cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            467899999999999999999999887776 443322222   23346777789999999999999876665433211 1


Q ss_pred             E-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545          194 M-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR  272 (441)
Q Consensus       194 ~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (441)
                      . +..+..+ . .+++++.|+.|..||.++++..-.+.                                          
T Consensus        84 ~~sp~~~~~-~-~v~~g~~dg~v~a~D~~tG~~~w~~~------------------------------------------  119 (369)
T 2hz6_A           84 QASPCRSSD-G-ILYMGKKQDIWYVIDLLTGEKQQTLS------------------------------------------  119 (369)
T ss_dssp             TTCSCC-------CCCCEEEEEEEEECCC---------------------------------------------------
T ss_pred             ccCceEecC-C-EEEEEeCCCEEEEEECCCCcEEEEec------------------------------------------
Confidence            0 1111123 3 35678889999999998764321110                                          


Q ss_pred             ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545          273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  352 (441)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~  352 (441)
                                                   .+.    ...++|++..|++++.|++|+.||..+++.... +.....  . 
T Consensus       120 -----------------------------~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~~~~~--~-  162 (369)
T 2hz6_A          120 -----------------------------SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN-ATYFDY--A-  162 (369)
T ss_dssp             ----------------------------------------------EEEEEEEEEEECCCSSSSSCCCE-EEEEEE--C-
T ss_pred             -----------------------------CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe-Eecccc--c-
Confidence                                         000    123456788888999999999999998874322 111111  1 


Q ss_pred             ceEEEeeCC----CcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCe
Q 013545          353 PIQLATTQD----PAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE  405 (441)
Q Consensus       353 ~~~~~~~~~----~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~  405 (441)
                        ..++..+    +.+++....+.+..||..+|+.+-.+......+...++++||..
T Consensus       163 --~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          163 --ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             --CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             --CccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence              1112222    33444344578999999999988776633333344566677653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.90  E-value=3e-06  Score=78.97  Aligned_cols=151  Identities=9%  Similarity=-0.012  Sum_probs=94.7

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      .....+..|+|+++.++++...++.|.+||..++...           .+        .+...+.++.+.+ ++.++++.
T Consensus        48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~--------~~~~~v~~i~~~~-dg~l~v~~  107 (326)
T 2ghs_A           48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-----------VH--------ALPFMGSALAKIS-DSKQLIAS  107 (326)
T ss_dssp             CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-----------EE--------ECSSCEEEEEEEE-TTEEEEEE
T ss_pred             CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-----------EE--------ECCCcceEEEEeC-CCeEEEEE
Confidence            3445678899766777888888999999998754310           01        0123567777776 56666654


Q ss_pred             eCCCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeC------CCcEEEEECCCCceeeeecCCCC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGAISQTLSGHRD  191 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~------d~~I~vwdl~~~~~~~~l~~h~~  191 (441)
                       .+ .|.+||..+++........     ..+..+.+.+++  . +.++...      .+.|..++  +++.. .+..+..
T Consensus       108 -~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G--~-l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~  179 (326)
T 2ghs_A          108 -DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG--A-LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADIS  179 (326)
T ss_dssp             -TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS--C-EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEES
T ss_pred             -CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC--C-EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCc
Confidence             44 5999999888754332221     235566666643  2 3333321      23455555  45433 3333444


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      ....++|+|+++.++++.+.++.|.+||+.
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence            567999999998766666677899999975

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.87  E-value=5.3e-10  Score=106.63  Aligned_cols=143  Identities=15%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 013545           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~  135 (441)
                      +..+++++.||.|..||..+++..            ....     .  +.+.+..+.. ++.++++++.|+.|..||.++
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~------------W~~~-----~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~t   68 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIK------------WTLK-----E--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKN   68 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEE------------EEEE-----C--CCSCCCC------CCEEECTTTCCEEEC----
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEE------------EEec-----C--CCceecceEc-CCCEEEEeCCCCEEEEEECCC
Confidence            457999999999999999887531            1111     0  1222222222 456788888999999999998


Q ss_pred             CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcE
Q 013545          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI  215 (441)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I  215 (441)
                      ++.+..+...... .+..+|.-..+..+++++.|+.|+.||.++|+.+..+..+.    ...++|++. .+++++.|+.|
T Consensus        69 G~~~w~~~~~~~~-~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v  142 (369)
T 2hz6_A           69 NEGLTKLPFTIPE-LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTI  142 (369)
T ss_dssp             -CCSEECSCCHHH-HHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEE
T ss_pred             CceeeeeeccCcc-ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEE
Confidence            8876655432110 00112211012356677788999999999999888776554    245567665 46778889999


Q ss_pred             EEEEcCCCc
Q 013545          216 RFWDIRRAG  224 (441)
Q Consensus       216 ~iWD~~~~~  224 (441)
                      +.||.++++
T Consensus       143 ~a~d~~tG~  151 (369)
T 2hz6_A          143 TMYDTKTRE  151 (369)
T ss_dssp             ECCCSSSSS
T ss_pred             EEEECCCCC
Confidence            999998764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.87  E-value=1.7e-05  Score=75.26  Aligned_cols=256  Identities=11%  Similarity=0.003  Sum_probs=149.9

Q ss_pred             eEEEccCCCCcEEEEee----------CCCcEEEEECCCCcccCCCCceeccceeEEe-ecccccCcccceeEEEEeeCC
Q 013545           47 NSLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVV-DKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        47 ~~l~~s~~~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ..++|+| ++++|..+.          .++.|.+||..+.+...         .+.+. .....  +......+.++| |
T Consensus        69 p~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~---------~i~~~~~~~~~--~g~~p~~~~~sp-D  135 (373)
T 2mad_H           69 PNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---------DIELPDAPRFD--VGPYSWMNANTP-N  135 (373)
T ss_pred             CCeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE---------EEECCCccccc--cCCCccceEECC-C
Confidence            3899997 567776664          47889999997654211         00000 00000  001122456666 7


Q ss_pred             CCEEEEEeC--CCcEEEEECCCCeEEEE-EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-----
Q 013545          116 TGLFVTGSY--DHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-----  187 (441)
Q Consensus       116 ~~~l~sgs~--D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-----  187 (441)
                      +++|+.+..  +.+|.++| .+++.+.. +..++.   ..+.+...  ..+++.+.|+.+.++|+ +++......     
T Consensus       136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~  208 (373)
T 2mad_H          136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVGAML  208 (373)
T ss_pred             CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence            888887764  58899999 99998887 766554   23344432  34566778999999999 887653221     


Q ss_pred             CCCCC-eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          188 GHRDG-IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       188 ~h~~~-v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      -.... .....|.+++..+++.. ..+.+.+.|+...... .+..              .....                
T Consensus       209 ~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~-v~~~--------------~~~~~----------------  256 (373)
T 2mad_H          209 TAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGAT-NKAP--------------IDALS----------------  256 (373)
T ss_pred             cCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcce-Eeee--------------eeecC----------------
Confidence            11111 23345667665444443 5778888887643110 0000              00000                


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec----------CCcEEEeeCCCC
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----------DSRIRLWDVESG  336 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----------D~~i~~wd~~~~  336 (441)
                                     .....             ..-.......++++||++.+..+..          .++|.++|+.+.
T Consensus       257 ---------------~~~~~-------------~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~  308 (373)
T 2mad_H          257 ---------------GGRKA-------------DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             ---------------Ccccc-------------cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence                           00000             0001122345789999887665432          357999999887


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCc-EEEEeC--CCceEEEEccCCceEeee
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPA-VVFVPC--MTAVKAFDIWSGKTCLTF  387 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~wd~~~~~~~~~l  387 (441)
                      +..    ..+.. ...+..+++++|++ .+++..  ...+.++|..+++...++
T Consensus       309 ~vv----~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          309 QTS----SQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEE----EEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            532    22221 23577899999999 677765  368999999999988773

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.84  E-value=6.6e-06  Score=78.11  Aligned_cols=279  Identities=15%  Similarity=0.108  Sum_probs=156.3

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCc--ccceeEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH--KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~  134 (441)
                      ..++.++.++.|..+|.++++..      ...    .........+  ...+.+....  ++..++.++.|+.|..+|.+
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~------W~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~  121 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEI------WSV----SLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTS  121 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEE------EEE----ECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEEccCCcee------eee----cCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECC
Confidence            46888888999999999877531      000    0000000000  1122222222  35578888999999999999


Q ss_pred             CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe-----EEEEEecCCCcEEEEe
Q 013545          135 CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILVTG  209 (441)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v-----~~v~fsp~~~~~l~s~  209 (441)
                      +++.+......+.+.......    ...+..++.++.|..+|.++|+.+..........     ...... ++  .++.+
T Consensus       122 tG~~~W~~~~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~--~v~~g  194 (376)
T 3q7m_A          122 DGTVAWQTKVAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG--AAVVG  194 (376)
T ss_dssp             TCCEEEEEECSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT--EEEEC
T ss_pred             CCCEEEEEeCCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC--EEEEE
Confidence            999887777654432111111    2256677889999999999999877665432211     122222 33  35667


Q ss_pred             ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccccc
Q 013545          210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL  289 (441)
Q Consensus       210 s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (441)
                      +.++.+..+|.++++..-........ +.                                            .... .+
T Consensus       195 ~~~g~l~~~d~~tG~~~w~~~~~~~~-~~--------------------------------------------~~~~-~~  228 (376)
T 3q7m_A          195 GDNGRVSAVLMEQGQMIWQQRISQAT-GS--------------------------------------------TEID-RL  228 (376)
T ss_dssp             CTTTEEEEEETTTCCEEEEEECCC--------------------------------------------------------
T ss_pred             cCCCEEEEEECCCCcEEEEEecccCC-CC--------------------------------------------cccc-cc
Confidence            88999999999877543222110000 00                                            0000 00


Q ss_pred             CCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC
Q 013545          290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC  369 (441)
Q Consensus       290 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (441)
                                ......++    +  .+..+..++.++.+..+|..+++.... ..     ......... .++.+.+...
T Consensus       229 ----------~~~~~~p~----~--~~~~v~~~~~~g~l~~~d~~tG~~~w~-~~-----~~~~~~~~~-~~~~l~~~~~  285 (376)
T 3q7m_A          229 ----------SDVDTTPV----V--VNGVVFALAYNGNLTALDLRSGQIMWK-RE-----LGSVNDFIV-DGNRIYLVDQ  285 (376)
T ss_dssp             -----------CCCCCCE----E--ETTEEEEECTTSCEEEEETTTCCEEEE-EC-----CCCEEEEEE-ETTEEEEEET
T ss_pred             ----------cccCCCcE----E--ECCEEEEEecCcEEEEEECCCCcEEee-cc-----CCCCCCceE-ECCEEEEEcC
Confidence                      00001111    1  134666677889999999998864321 11     111112222 2333333334


Q ss_pred             CCceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          370 MTAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       370 ~~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      .+.+..+|..+|+.+-.... ....+....+  .+..|+.++.++.+.++++.+++.
T Consensus       286 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          286 NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence            46899999999988766542 2222333333  256788888899999999988874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.79  E-value=1.7e-06  Score=81.82  Aligned_cols=234  Identities=11%  Similarity=-0.006  Sum_probs=142.5

Q ss_pred             eCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE---------eCCCcEEEEECC
Q 013545          113 PVDTGLFVTGSY-----DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG---------TEDVQVRLCDIA  178 (441)
Q Consensus       113 ~~~~~~l~sgs~-----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~---------s~d~~I~vwdl~  178 (441)
                      ++++..++....     +++|.+.|..+++.+.++....... +.++|++.  .+.++.         ..++.|.+||..
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~--~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGS--FIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCC--EEEEEcccccccccCCCCCEEEEEECC
Confidence            346777666654     6899999999999998888654444 88888754  233332         135789999999


Q ss_pred             CCceeeeecCC-------CCCeEEEEEecCCCcEEEEee-cCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545          179 SGAISQTLSGH-------RDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA  250 (441)
Q Consensus       179 ~~~~~~~l~~h-------~~~v~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (441)
                      +.+.+.++.-.       ......+.|+|++++++++.. .+++|.++|+.+.+....+...                  
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~------------------  179 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------------------  179 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC------------------
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC------------------
Confidence            99988776421       124567999999998766643 3789999999887655443110                  


Q ss_pred             CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545          251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  330 (441)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~  330 (441)
                                                                            + . ...+....+.+++.+.||++.+
T Consensus       180 ------------------------------------------------------g-~-~~~~P~g~~~~~~~~~DG~~~~  203 (386)
T 3sjl_D          180 ------------------------------------------------------D-C-YHIFPTAPDTFFMHCRDGSLAK  203 (386)
T ss_dssp             ------------------------------------------------------S-E-EEEEEEETTEEEEEETTSCEEE
T ss_pred             ------------------------------------------------------C-c-ceeecCCCceeEEECCCCCEEE
Confidence                                                                  0 0 0112223345556666666666


Q ss_pred             eeCCC-CCceeeeeeeEEecc-Ccce--EEEe-eCCCcEEEEeCCCceEEEEccCCc--eEeeec----------ccccc
Q 013545          331 WDVES-GRNTLVNFETVRLQT-SKPI--QLAT-TQDPAVVFVPCMTAVKAFDIWSGK--TCLTFR----------GHYEY  393 (441)
Q Consensus       331 wd~~~-~~~~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~wd~~~~~--~~~~l~----------gh~~~  393 (441)
                      .++.+ ++...  .....+.. ..++  ...+ .+++..+++...+.+.++|..++.  ....+.          -..+.
T Consensus       204 v~~~~~g~v~~--~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g  281 (386)
T 3sjl_D          204 VAFGTEGTPEI--THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG  281 (386)
T ss_dssp             EECCSSSCCEE--EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS
T ss_pred             EECCCCCeEEE--eecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCC
Confidence            66654 33211  00000001 1111  1233 357767777667788999986654  222221          01234


Q ss_pred             eEEEEEcCCCCeEEEeec----------CCcEEEeCCCCCCC
Q 013545          394 VNCCCFSSQDQELYTGGN----------DRQILVWCPSRHIS  425 (441)
Q Consensus       394 v~~v~fspd~~~l~s~s~----------D~~i~vW~~~~~~~  425 (441)
                      ...++++|+++.|+.+-.          ..+|-+.|+.+++.
T Consensus       282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv  323 (386)
T 3sjl_D          282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  323 (386)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence            456888999999886532          24677788888874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.77  E-value=5.5e-06  Score=79.16  Aligned_cols=222  Identities=14%  Similarity=0.165  Sum_probs=134.5

Q ss_pred             CCCE-EEEEeCCCcEEEEECCCC----eEEEEEe-------cCC-eeEEEeeccCCCCccEEEEEeCC------CcEEEE
Q 013545          115 DTGL-FVTGSYDHYVKVWDTNCT----RVVMNFK-------MPG-KVYRTAMSPLAASHMLIAAGTED------VQVRLC  175 (441)
Q Consensus       115 ~~~~-l~sgs~D~~i~iWd~~~~----~~~~~~~-------~~~-~~~~~~~~~~~~~~~~las~s~d------~~I~vw  175 (441)
                      ++++ ++++..+.+|.+.|+.+.    +....+.       ... ....+...|+   . +++++..+      +.|.+.
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd---G-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD---A-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS---C-EEEEEEEETTSCSCCEEEEE
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC---e-EEEEcCCCcCCCCCCeEEEE
Confidence            4444 567778899999999755    5555552       111 1223344443   2 44444444      689999


Q ss_pred             ECCCCceeeeecC--CCCC-eEEEEEecCCCcEEEEee-------------------cCCcEEEEEcCCCceeeEeccCC
Q 013545          176 DIASGAISQTLSG--HRDG-IMTVEWSTSSEWILVTGG-------------------CDGAIRFWDIRRAGCFRVLDQSQ  233 (441)
Q Consensus       176 dl~~~~~~~~l~~--h~~~-v~~v~fsp~~~~~l~s~s-------------------~Dg~I~iWD~~~~~~~~~~~~~~  233 (441)
                      |.++.+.+.++.-  .... -..+.|+|+++ .++++.                   .+.+|.+||+.+++....+....
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~  248 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE  248 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence            9999999888762  2211 23477899988 466664                   26899999998754433331100


Q ss_pred             ccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEE-
Q 013545          234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV-  312 (441)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-  312 (441)
                                                                                          .+ .....|.| 
T Consensus       249 --------------------------------------------------------------------~g-~~P~~i~f~  259 (462)
T 2ece_A          249 --------------------------------------------------------------------EN-RMALELRPL  259 (462)
T ss_dssp             --------------------------------------------------------------------TE-EEEEEEEEC
T ss_pred             --------------------------------------------------------------------CC-CccceeEee
Confidence                                                                                00 11334545 


Q ss_pred             -ccCCCEEEEee------cCCcEEEeeCCCCCceeee---eeeEEec-------------cCcceEEEeeCCCcEEEEeC
Q 013545          313 -TEDGMYLLSAG------SDSRIRLWDVESGRNTLVN---FETVRLQ-------------TSKPIQLATTQDPAVVFVPC  369 (441)
Q Consensus       313 -s~dg~~l~sgs------~D~~i~~wd~~~~~~~~~~---~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  369 (441)
                       +|+++++..+.      .+++|.+|....++.....   +......             ...+..+.+++|++.+++++
T Consensus       260 ~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSn  339 (462)
T 2ece_A          260 HDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSL  339 (462)
T ss_dssp             SSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEE
T ss_pred             ECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEe
Confidence             99999876666      4568887766543211111   1111000             13456678899999999986


Q ss_pred             C--CceEEEEccCC---ceEeeeccc-----------c---cceEEEEEcCCCCeEEEee
Q 013545          370 M--TAVKAFDIWSG---KTCLTFRGH-----------Y---EYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       370 ~--~~~~~wd~~~~---~~~~~l~gh-----------~---~~v~~v~fspd~~~l~s~s  410 (441)
                      .  +.+.++|+.+.   +++..+.-.           .   +.-..+++||||++|+.+.
T Consensus       340 rg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          340 WGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            6  58999998532   333333221           0   1257899999999998776

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.77  E-value=1.1e-07  Score=89.62  Aligned_cols=227  Identities=11%  Similarity=0.052  Sum_probs=138.4

Q ss_pred             ceeEEEEeeCCCCEEEEEe--CCCcEEEEECCCCeEEEEEec--------CCeeEEEeeccCCCCccEEEEEeC-----C
Q 013545          105 AISSAIWYPVDTGLFVTGS--YDHYVKVWDTNCTRVVMNFKM--------PGKVYRTAMSPLAASHMLIAAGTE-----D  169 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs--~D~~i~iWd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~las~s~-----d  169 (441)
                      .+..+++++ ++.++++..  .++.++||.+.+++. ..+..        -..+..+.+.+++   .+.++-..     +
T Consensus        18 ~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g---~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           18 APGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNG---IVWMLDNGNQSKSV   92 (343)
T ss_dssp             CEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSS---EEEEEECHHHHTSC
T ss_pred             CcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCC---cEEEEcCCCCcCCC
Confidence            455667765 678888864  234366666655543 22211        1235666666542   34443322     5


Q ss_pred             CcEEEEECCCCceeeeecC------CCCCeEEEEEecCCCcEEEEee---cCCcEEEEEcCCCceeeEeccCCccccCCC
Q 013545          170 VQVRLCDIASGAISQTLSG------HRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (441)
Q Consensus       170 ~~I~vwdl~~~~~~~~l~~------h~~~v~~v~fsp~~~~~l~s~s---~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~  240 (441)
                      ..|.+||+++++.+..+.-      +...+..++++|++..++++-.   .++.|.+||+.+++..+.+.....      
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~------  166 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG------  166 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT------
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc------
Confidence            7899999999987665542      2234688999987555667766   688999999987654333211000      


Q ss_pred             CcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE
Q 013545          241 PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL  320 (441)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  320 (441)
                                                                                 .  ...+   ..+.++|..+.
T Consensus       167 -----------------------------------------------------------~--~~~~---~~~~~~g~~~~  182 (343)
T 2qe8_A          167 -----------------------------------------------------------I--APED---IDLVIDGVPVQ  182 (343)
T ss_dssp             -----------------------------------------------------------T--SCCS---CCCEETTEECB
T ss_pred             -----------------------------------------------------------c--cccc---cceeECCEEEE
Confidence                                                                       0  0000   12344676777


Q ss_pred             EeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccC-----Cc-----eEe--eec
Q 013545          321 SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS-----GK-----TCL--TFR  388 (441)
Q Consensus       321 sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-----~~-----~~~--~l~  388 (441)
                      +.+.|++++.|...                  +.-+++++++..+++.....-++|.+..     +.     ...  ...
T Consensus       183 ~~~~~g~~~~~~~~------------------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  244 (343)
T 2qe8_A          183 IGQPDGTVIRPHLG------------------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY  244 (343)
T ss_dssp             EECTTSCEECCCCC------------------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred             eccCCCceeceecc------------------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence            77788888777421                  2236778888877776554445665432     11     001  122


Q ss_pred             ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          389 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       389 gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      ++.+....++++++|..+++...++.|.+|++.++.
T Consensus       245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            455567889999999999998889999999994444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.75  E-value=4e-06  Score=86.25  Aligned_cols=157  Identities=10%  Similarity=0.093  Sum_probs=91.9

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC------CCcEE
Q 013545           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY------DHYVK  129 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~------D~~i~  129 (441)
                      +..|+.++.|+.+..+|..+++..            ..............+.+..... + +.++.++.      |+.|.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~------------W~~~~~~~~~~~~~~~~~p~v~-~-~~v~v~~~~~~~~~~g~v~  193 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEV------------WHQNTFEGQKGSLTITGAPRVF-K-GKVIIGNGGAEYGVRGYIT  193 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEE------------EEEETTTTCCSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEE------------eeecCCcCcCcCcccccCcEEE-C-CEEEEEecccccCCCCEEE
Confidence            346888899999999999887631            1111000000001111111111 2 34444443      79999


Q ss_pred             EEECCCCeEEEEEecCCee---------------------------------EEEeeccCCCCccEEEEEeCCC------
Q 013545          130 VWDTNCTRVVMNFKMPGKV---------------------------------YRTAMSPLAASHMLIAAGTEDV------  170 (441)
Q Consensus       130 iWd~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~las~s~d~------  170 (441)
                      .+|.++++.+..+......                                 ....+.+.   ..++..++.++      
T Consensus       194 a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~---~~~vy~~~~~~~~w~~~  270 (677)
T 1kb0_A          194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE---LNTMYVGTGNGSPWSHK  270 (677)
T ss_dssp             EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHH
T ss_pred             EEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC---CCEEEEECCCCccccCC
Confidence            9999999998777643211                                 01122222   23455555443      


Q ss_pred             -------------cEEEEECCCCceeeeecC--CC-------CCeEEEEEecCCC--cEEEEeecCCcEEEEEcCCCcee
Q 013545          171 -------------QVRLCDIASGAISQTLSG--HR-------DGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRRAGCF  226 (441)
Q Consensus       171 -------------~I~vwdl~~~~~~~~l~~--h~-------~~v~~v~fsp~~~--~~l~s~s~Dg~I~iWD~~~~~~~  226 (441)
                                   .|..+|.++|+.+..++.  |.       .....+....+++  .+++.++.+|.+.++|.++++.+
T Consensus       271 ~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          271 VRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence                         499999999998876653  31       2233344444663  35788999999999999998876


Q ss_pred             eEe
Q 013545          227 RVL  229 (441)
Q Consensus       227 ~~~  229 (441)
                      -.+
T Consensus       351 ~~~  353 (677)
T 1kb0_A          351 SAK  353 (677)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.66  E-value=3.3e-05  Score=73.22  Aligned_cols=258  Identities=12%  Similarity=0.117  Sum_probs=147.2

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~  136 (441)
                      ..++.++.|+.|..+|.++++..            ......   +.  .......   .++.++.++.++.|..+|.+++
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~------------W~~~~~---~~--~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG  163 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVA------------WQTKVA---GE--ALSRPVV---SDGLVLIHTSNGQLQALNEADG  163 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEE------------EEEECS---SC--CCSCCEE---ETTEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEE------------EEEeCC---Cc--eEcCCEE---ECCEEEEEcCCCeEEEEECCCC
Confidence            46778889999999999877531            100000   00  0001111   1447888889999999999999


Q ss_pred             eEEEEEecCCeeEEEe--eccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC--C--------e-EEEEEecCCC
Q 013545          137 RVVMNFKMPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD--G--------I-MTVEWSTSSE  203 (441)
Q Consensus       137 ~~~~~~~~~~~~~~~~--~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~--~--------v-~~v~fsp~~~  203 (441)
                      +.+..+..........  ..+... ...+..++.++.+..+|.++|+.+........  .        + ...... + .
T Consensus       164 ~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~-~  240 (376)
T 3q7m_A          164 AVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-N-G  240 (376)
T ss_dssp             CEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-T-T
T ss_pred             cEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-C-C
Confidence            9887776654332110  111111 23566678889999999999998766542210  0        1 111111 2 3


Q ss_pred             cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG  283 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (441)
                       .+..++.++.+..+|.++++..-...                                                     
T Consensus       241 -~v~~~~~~g~l~~~d~~tG~~~w~~~-----------------------------------------------------  266 (376)
T 3q7m_A          241 -VVFALAYNGNLTALDLRSGQIMWKRE-----------------------------------------------------  266 (376)
T ss_dssp             -EEEEECTTSCEEEEETTTCCEEEEEC-----------------------------------------------------
T ss_pred             -EEEEEecCcEEEEEECCCCcEEeecc-----------------------------------------------------
Confidence             34566778999999987764321100                                                     


Q ss_pred             CcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCc
Q 013545          284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA  363 (441)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (441)
                                          ......+..  ++..|..++.++.|..+|..+++.... ..  ............ .+ .
T Consensus       267 --------------------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~-~~--~~~~~~~~~~~~-~~-~  319 (376)
T 3q7m_A          267 --------------------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT-QS--DLLHRLLTSPVL-YN-G  319 (376)
T ss_dssp             --------------------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE-EC--TTTTSCCCCCEE-ET-T
T ss_pred             --------------------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe-ec--ccCCCcccCCEE-EC-C
Confidence                                001122222  355677788899999999998874321 11  000111111111 23 3


Q ss_pred             EEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          364 VVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       364 ~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      .++++. .+.+.++|..+|+.+..+......+...... .+..|+.++.|+.|..|+
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            455554 4679999999999887766543333321111 245777788899998875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.64  E-value=1.9e-05  Score=75.95  Aligned_cols=258  Identities=12%  Similarity=0.083  Sum_probs=151.4

Q ss_pred             EEEccCCCCcEEEEee----------CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           48 SLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+.++|+ +++|..+.          .++.|.++|..+.+...         .+.+...... ........+.+++ |++
T Consensus       122 gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~---------~I~v~g~~r~-~~g~~P~~~~~sp-DGk  189 (426)
T 3c75_H          122 HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA---------DIELPDAPRF-LVGTYQWMNALTP-DNK  189 (426)
T ss_dssp             EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE---------EEEETTCCCC-CBSCCGGGSEECT-TSS
T ss_pred             ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEE---------EEECCCcccc-ccCCCcceEEEcC-CCC
Confidence            7999975 55555544          47889999998765311         1111000000 0000111245554 788


Q ss_pred             EEEEEeC--CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee----ecCCCC
Q 013545          118 LFVTGSY--DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT----LSGHRD  191 (441)
Q Consensus       118 ~l~sgs~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~----l~~h~~  191 (441)
                      +++.+..  +++|.+.|+.+++.+.++..++.   ..+.+.+.  ..+++.+.|+.+.+.++.+++....    +.-...
T Consensus       190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~  264 (426)
T 3c75_H          190 NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP--TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE  264 (426)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET--TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred             EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence            8887764  58899999999999988887654   22334332  3455667789999999977665422    211111


Q ss_pred             Ce-EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          192 GI-MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       192 ~v-~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      ++ ..+.|.++++.++++ +..+.|.+.|+...... .++...                                     
T Consensus       265 p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~-v~~~~~-------------------------------------  305 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGAT-FRAPIE-------------------------------------  305 (426)
T ss_dssp             CBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEE-ECCCEE-------------------------------------
T ss_pred             ceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceE-Eeeeee-------------------------------------
Confidence            11 245678888765554 45788999887643210 000000                                     


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec----------CCcEEEeeCCCCCcee
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----------DSRIRLWDVESGRNTL  340 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----------D~~i~~wd~~~~~~~~  340 (441)
                              +........             .-.......++++||++++.....          +++|.++|+.+.+...
T Consensus       306 --------~~~~~~i~~-------------g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~  364 (426)
T 3c75_H          306 --------ALTEAERAD-------------DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN  364 (426)
T ss_dssp             --------SSCTTTGGG-------------TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred             --------ecccccccc-------------ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEE
Confidence                    000000000             001111223689999886555432          3579999999876421


Q ss_pred             eeeeeEEeccCcceEEEeeCCCc-EEEEeC--CCceEEEEccCCceEeee
Q 013545          341 VNFETVRLQTSKPIQLATTQDPA-VVFVPC--MTAVKAFDIWSGKTCLTF  387 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~wd~~~~~~~~~l  387 (441)
                          .+.. ...+..+++++|+. .+++..  ...+.++|..+++.+.++
T Consensus       365 ----~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          365 ----KIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ----EEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ----EEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                2221 12467789999998 888876  368999999999998886

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.62  E-value=1.6e-05  Score=81.82  Aligned_cols=79  Identities=14%  Similarity=0.091  Sum_probs=50.9

Q ss_pred             CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc-eEEEEEcCC
Q 013545          325 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSSQ  402 (441)
Q Consensus       325 D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~-v~~v~fspd  402 (441)
                      +++|+.||+.+++....    ..... ......+...+.++|.++. +.++.||..+|+++-++....+. ..-+.|+.|
T Consensus       454 ~g~l~A~D~~tG~~~W~----~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWE----VPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTEEEEE----EEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCCeEeE----ccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEEC
Confidence            47899999999874322    11111 1111233445667777654 68999999999999888755433 244677889


Q ss_pred             CCeEEE
Q 013545          403 DQELYT  408 (441)
Q Consensus       403 ~~~l~s  408 (441)
                      |+.+++
T Consensus       529 G~qyv~  534 (689)
T 1yiq_A          529 GEQYVT  534 (689)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            876553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.60  E-value=1.3e-05  Score=82.32  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=42.1

Q ss_pred             CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +.+..||+.+|+.+-.+..+ .++....+...+.+++.++.|+.++.||..+++.
T Consensus       438 g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            45888999999987766543 3344455666788999999999999999998874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.57  E-value=4.5e-06  Score=76.94  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=106.1

Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      +..+..+........|+|+++.++++...++.|..|+.. ++ ...+                                 
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~---------------------------------   81 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVL---------------------------------   81 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEE---------------------------------
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEE---------------------------------
Confidence            344444556678899999998778888888999999863 22 1111                                 


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                                                            ..+...+..++++++|+.+++...++.|.+|+.. ++...  
T Consensus        82 --------------------------------------~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~--  120 (305)
T 3dr2_A           82 --------------------------------------LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL--  120 (305)
T ss_dssp             --------------------------------------EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--
T ss_pred             --------------------------------------eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE--
Confidence                                                  0112347789999999988777677899999986 43211  


Q ss_pred             eeeEE--eccCcceEEEeeCCCcEEEEe----C--------------CCceEEEEccCCceEeeecccccceEEEEEcCC
Q 013545          343 FETVR--LQTSKPIQLATTQDPAVVFVP----C--------------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       343 ~~~~~--~~~~~~~~~~~~~~~~~~~~~----~--------------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd  402 (441)
                      +....  .....+..+++.+++.+.++.    .              ...+..+|..+++.....  +....+.++|+||
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spd  198 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPD  198 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTT
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCC
Confidence            11100  111334567888999887752    1              124555565566544333  4456789999999


Q ss_pred             CCeEEEeecC------CcEEEeCCCC
Q 013545          403 DQELYTGGND------RQILVWCPSR  422 (441)
Q Consensus       403 ~~~l~s~s~D------~~i~vW~~~~  422 (441)
                      ++.|+.+..+      +.|.+|++..
T Consensus       199 g~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          199 EQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             SSEEEEEECCC---CCCEEEEEEEET
T ss_pred             CCEEEEEecCCcCCCCCEEEEEEecC
Confidence            9987766555      6899998764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.53  E-value=5.4e-06  Score=81.94  Aligned_cols=264  Identities=12%  Similarity=0.076  Sum_probs=145.2

Q ss_pred             CCCEE-EEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEE-----------------eCCCcEEE
Q 013545          115 DTGLF-VTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAG-----------------TEDVQVRL  174 (441)
Q Consensus       115 ~~~~l-~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~-----------------s~d~~I~v  174 (441)
                      ||.++ ++...+.+|.+.|+.+.++...+.++  .....+.+.....+..+++++                 ..++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            34444 45556778999999999987755543  334455542111233344442                 23457999


Q ss_pred             EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC--------------cEEEEEcCCCceeeEeccCCccccCCC
Q 013545          175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--------------AIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (441)
Q Consensus       175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--------------~I~iWD~~~~~~~~~~~~~~~~~~~~~  240 (441)
                      .|.++.+.+.++.--. ....++++|++++.++++....              .|.+.|......  ..     ..++..
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v-----~~Gk~~  251 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AI-----AAGDYQ  251 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HH-----HHTCSE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--ec-----cCCCee
Confidence            9999988877765211 3466779999998766654432              355555432110  00     000000


Q ss_pred             CcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE
Q 013545          241 PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL  320 (441)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  320 (441)
                                    ..            +.+.+......  .+...        .   ....-.....++.++|||++++
T Consensus       252 --------------~i------------~~V~VID~~~~--~~~~~--------~---~~Ipvg~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          252 --------------EL------------NGVKVVDGRKE--ASSLF--------T---RYIPIANNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             --------------EE------------TTEEEEECSGG--GCCSS--------E---EEEEEESSCCCEEECTTSSEEE
T ss_pred             --------------EE------------CcEEEEeCccc--CCcee--------E---EEEecCCCceEEEEcCCCCEEE
Confidence                          00            00000000000  00000        0   0000112355789999999755


Q ss_pred             -EeecCCcEEEeeCCCCCce----e---eeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccC----------
Q 013545          321 -SAGSDSRIRLWDVESGRNT----L---VNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS----------  380 (441)
Q Consensus       321 -sgs~D~~i~~wd~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~----------  380 (441)
                       ++..+.+|.++|+.+.+..    +   ............|..++++++| .+++...  +.+-.||+.+          
T Consensus       293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~  371 (595)
T 1fwx_A          293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV  371 (595)
T ss_dssp             EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred             EeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence             5567889999999864210    0   0001111123567889999999 6666543  6788899876          


Q ss_pred             CceEeeecccccc-----eEEEEEcCCCCeEEEe---ecCCcE----------EEeCCCCCCCC
Q 013545          381 GKTCLTFRGHYEY-----VNCCCFSSQDQELYTG---GNDRQI----------LVWCPSRHISD  426 (441)
Q Consensus       381 ~~~~~~l~gh~~~-----v~~v~fspd~~~l~s~---s~D~~i----------~vW~~~~~~~~  426 (441)
                      .+.+.++..|-.+     -..+.++|||++|++.   +.|+-+          .+.|+++++..
T Consensus       372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence            4556666555433     2345678999999975   335432          77888666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.52  E-value=2.1e-05  Score=69.62  Aligned_cols=113  Identities=6%  Similarity=0.114  Sum_probs=78.4

Q ss_pred             EEEEeeCCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          108 SAIWYPVDTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                      .+.+.  ++.++.|+|.++  .|+.+|+++++.+....++...+...+.+..  +.+..+...++.+.++|.++.+.+.+
T Consensus        47 GL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g--~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           47 GFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK--DKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             eEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC--CEEEEEEeeCCEEEEEECccCcEEEE
Confidence            34444  566777888876  8999999999999988887655544444443  23444555688999999999999888


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeE
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV  228 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~  228 (441)
                      ++-.. .-+.  ++++++.+++|- .+++|.++|..+.+....
T Consensus       123 i~~~~-eG~g--lt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~  161 (262)
T 3nol_A          123 FNYDG-EGWG--LTHNDQYLIMSD-GTPVLRFLDPESLTPVRT  161 (262)
T ss_dssp             EECSS-CCCC--EEECSSCEEECC-SSSEEEEECTTTCSEEEE
T ss_pred             EECCC-CceE--EecCCCEEEEEC-CCCeEEEEcCCCCeEEEE
Confidence            86322 2233  345677666554 467899999887654443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.45  E-value=2e-05  Score=75.23  Aligned_cols=189  Identities=14%  Similarity=0.125  Sum_probs=117.4

Q ss_pred             CccEEEEEeCCCcEEEEECCCC----ceeeeec------C-CCCCeEEEEEecCCCcEEEEeecC------CcEEEEEcC
Q 013545          159 SHMLIAAGTEDVQVRLCDIASG----AISQTLS------G-HRDGIMTVEWSTSSEWILVTGGCD------GAIRFWDIR  221 (441)
Q Consensus       159 ~~~~las~s~d~~I~vwdl~~~----~~~~~l~------~-h~~~v~~v~fsp~~~~~l~s~s~D------g~I~iWD~~  221 (441)
                      ...+++.+..++.|.++|+.+.    +..+++.      . -......+...|++  +++|+..+      +.|.+.|..
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECC
Confidence            4567777888899999999765    4555552      0 11234567788998  67777666      789999988


Q ss_pred             CCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccce
Q 013545          222 RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT  301 (441)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (441)
                      +.+....++....                                                                   
T Consensus       173 T~~v~~~~~~~~~-------------------------------------------------------------------  185 (462)
T 2ece_A          173 SFEPLGKWEIDRG-------------------------------------------------------------------  185 (462)
T ss_dssp             TCCEEEECCSBCT-------------------------------------------------------------------
T ss_pred             CCeEEEEEccCCC-------------------------------------------------------------------
Confidence            7655444321000                                                                   


Q ss_pred             eeccCeEEEEEccCCCEEEEee-------------------cCCcEEEeeCCCCCceeeeeeeEEecc--CcceE--EEe
Q 013545          302 AHYGAVTGLKVTEDGMYLLSAG-------------------SDSRIRLWDVESGRNTLVNFETVRLQT--SKPIQ--LAT  358 (441)
Q Consensus       302 ~h~~~v~~l~~s~dg~~l~sgs-------------------~D~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~--~~~  358 (441)
                       -...-..+-|+|+++.+++..                   .+.+|.+||+.+++.    ..++....  ..+..  +++
T Consensus       186 -~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~----~~tI~vg~~g~~P~~i~f~~  260 (462)
T 2ece_A          186 -DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR----IHSLTLGEENRMALELRPLH  260 (462)
T ss_dssp             -TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE----EEEEESCTTEEEEEEEEECS
T ss_pred             -CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE----eeEEecCCCCCccceeEeeE
Confidence             001112466899999888774                   478999999997642    12223211  22333  345


Q ss_pred             eCCCcEEEEeCC-----C--ceEEEEccCCce--Eee--ecc----------------cccceEEEEEcCCCCeEEEeec
Q 013545          359 TQDPAVVFVPCM-----T--AVKAFDIWSGKT--CLT--FRG----------------HYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       359 ~~~~~~~~~~~~-----~--~~~~wd~~~~~~--~~~--l~g----------------h~~~v~~v~fspd~~~l~s~s~  411 (441)
                      ++++..+++.+.     .  ++-+|....++.  ..+  +..                -......+.+||||++|+.+..
T Consensus       261 ~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr  340 (462)
T 2ece_A          261 DPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW  340 (462)
T ss_dssp             STTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred             CCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence            899998888764     3  455444433321  111  111                0234788999999999886554


Q ss_pred             -CCcEEEeCCC
Q 013545          412 -DRQILVWCPS  421 (441)
Q Consensus       412 -D~~i~vW~~~  421 (441)
                       .+.|.++++.
T Consensus       341 g~d~VavfdV~  351 (462)
T 2ece_A          341 GIGEVRQYDIS  351 (462)
T ss_dssp             TTTEEEEEECS
T ss_pred             CCCEEEEEEec
Confidence             6789999986

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.44  E-value=4.5e-05  Score=70.54  Aligned_cols=218  Identities=12%  Similarity=0.108  Sum_probs=129.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCee-EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      +..+..++.++.|..+|.. ++........... ......+   +. .+..++.++.|..+|.+ ++....+......+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~---~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~  180 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE---DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITS  180 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT---TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC---CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence            4467778888999999988 7766555543322 1122221   12 35557777899999998 877666665555667


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      ++.+.+++. +++ ++  +.|..+| .+++......                                            
T Consensus       181 ~~~~d~~g~-l~v-~t--~~l~~~d-~~g~~~~~~~--------------------------------------------  211 (330)
T 3hxj_A          181 AASIGKDGT-IYF-GS--DKVYAIN-PDGTEKWNFY--------------------------------------------  211 (330)
T ss_dssp             CCEECTTCC-EEE-ES--SSEEEEC-TTSCEEEEEC--------------------------------------------
T ss_pred             eeEEcCCCE-EEE-Ee--CEEEEEC-CCCcEEEEEc--------------------------------------------
Confidence            777777765 444 33  7888888 5443221110                                            


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                                                 .....+.++.+.++|...+ ++.++.|..+|.. ++.. .   ..........
T Consensus       212 ---------------------------~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~-g~~~-~---~~~~~~~~~~  258 (330)
T 3hxj_A          212 ---------------------------AGYWTVTRPAISEDGTIYV-TSLDGHLYAINPD-GTEK-W---RFKTGKRIES  258 (330)
T ss_dssp             ---------------------------CSSCCCSCCEECTTSCEEE-EETTTEEEEECTT-SCEE-E---EEECSSCCCS
T ss_pred             ---------------------------cCCcceeceEECCCCeEEE-EcCCCeEEEECCC-CCEe-E---EeeCCCCccc
Confidence                                       0012245566777775444 6667788888753 3221 1   1111111122


Q ss_pred             EEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          355 QLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      ......++.+.+....+.+..+|. +++....+......+.++.+.++|+..+ ++.+|.+++-..+..
T Consensus       259 ~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          259 SPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEH  325 (330)
T ss_dssp             CCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC---
T ss_pred             cceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEecccc
Confidence            233344555444444457888886 7777776665566788888888876554 778999988766543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.43  E-value=8.9e-05  Score=66.32  Aligned_cols=195  Identities=10%  Similarity=0.021  Sum_probs=124.8

Q ss_pred             eEEEEeeCCCCEEEEEeC--CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          107 SSAIWYPVDTGLFVTGSY--DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       107 ~~~~~~~~~~~~l~sgs~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      ..+.+.+ ++.++++.+.  +++|++.|+.+++.+..+.++.......+...+  ..+..+.-.++.+.++|.++.+.+.
T Consensus        24 ~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           24 QGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             ccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEEE
Confidence            3466664 4555555554  689999999999999888765543333333332  2455555678899999999999888


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR  264 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (441)
                      ++.--...  ...++++++++++|- .+++|.+.|..+.+....+.....                              
T Consensus       101 ~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~------------------------------  147 (266)
T 2iwa_A          101 NFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYN------------------------------  147 (266)
T ss_dssp             EEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEET------------------------------
T ss_pred             EEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCC------------------------------
Confidence            87522111  233566888777665 578999999887654433311000                              


Q ss_pred             cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeee
Q 013545          265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE  344 (441)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~  344 (441)
                                                          ......++.+.|. +|...++...+++|.+.|+.+++..    .
T Consensus       148 ------------------------------------~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~----~  186 (266)
T 2iwa_A          148 ------------------------------------GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL----G  186 (266)
T ss_dssp             ------------------------------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE----E
T ss_pred             ------------------------------------CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE----E
Confidence                                                0001235677777 7766666667889999999998742    1


Q ss_pred             eEEec-------------cCcceEEEeeCCCcEEEEeCC--CceEEEEc
Q 013545          345 TVRLQ-------------TSKPIQLATTQDPAVVFVPCM--TAVKAFDI  378 (441)
Q Consensus       345 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~  378 (441)
                      .+.+.             ...+.-+++.+++..+++.+.  ..+...++
T Consensus       187 ~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          187 WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            22221             124567899999888887765  34444444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.34  E-value=0.00019  Score=63.03  Aligned_cols=113  Identities=11%  Similarity=0.084  Sum_probs=79.2

Q ss_pred             EEEEeeCCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          108 SAIWYPVDTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                      .+.+.  ++.++.|.+.++  .|+..|+.+++.+....++...+...+....  +.+......++.+.++|.++.+.+.+
T Consensus        25 GL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           25 GLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             EEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            45554  355667777764  8999999999999998887665544444443  34555556788999999999999988


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeE
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV  228 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~  228 (441)
                      ++-.. .-+.++  ++++.+++|- .+++|.++|..+.+....
T Consensus       101 i~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~  139 (243)
T 3mbr_X          101 FRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGS  139 (243)
T ss_dssp             EECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEE
T ss_pred             EeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEE
Confidence            86432 224444  5667666664 478899999887654443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.33  E-value=0.00028  Score=63.08  Aligned_cols=205  Identities=10%  Similarity=0.014  Sum_probs=124.4

Q ss_pred             eEEEEEecCCe--eEEEeeccCCCCccEEEEEe--CCCcEEEEECCCCceeeeecC-CCCCeEEEEEecCCCcEEEEeec
Q 013545          137 RVVMNFKMPGK--VYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTLSG-HRDGIMTVEWSTSSEWILVTGGC  211 (441)
Q Consensus       137 ~~~~~~~~~~~--~~~~~~~~~~~~~~~las~s--~d~~I~vwdl~~~~~~~~l~~-h~~~v~~v~fsp~~~~~l~s~s~  211 (441)
                      +.+.++++...  ...+.++++  + .+..+.+  .++.|+++|+++++.+..+.- .......+++.  ++.++++.-.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~d--g-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAEN--D-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECST--T-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             eEEEEEECCCCCCcccEEEeCC--C-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            45566666543  356667654  2 3444333  257999999999998877642 22222345554  4456677667


Q ss_pred             CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545          212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP  291 (441)
Q Consensus       212 Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (441)
                      ++.+.++|..+.+.+..+...                                                           
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g-----------------------------------------------------------  105 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQ-----------------------------------------------------------  105 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECC-----------------------------------------------------------
T ss_pred             CCEEEEEECCCCcEEEEEECC-----------------------------------------------------------
Confidence            899999999876544433110                                                           


Q ss_pred             CcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE--eccCcceEEEeeCCCcEEEEeC
Q 013545          292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR--LQTSKPIQLATTQDPAVVFVPC  369 (441)
Q Consensus       292 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  369 (441)
                                  ...  ...+++||+.+..+..+++|.++|..+.+.... .....  .....+..+.+. ++ .+++..
T Consensus       106 ------------~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-I~Vg~~~~p~~~~nele~~-dg-~lyvn~  168 (266)
T 2iwa_A          106 ------------MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-HNVKYNGHRVIRLNELEYI-NG-EVWANI  168 (266)
T ss_dssp             ------------SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-EECEETTEECCCEEEEEEE-TT-EEEEEE
T ss_pred             ------------CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-EEECCCCcccccceeEEEE-CC-EEEEec
Confidence                        000  122556777666566788999999988653211 11100  001123345555 55 455543


Q ss_pred             --CCceEEEEccCCceEeeecccc-------------cceEEEEEcCCCCe-EEEeecCCcEEEeCCCC
Q 013545          370 --MTAVKAFDIWSGKTCLTFRGHY-------------EYVNCCCFSSQDQE-LYTGGNDRQILVWCPSR  422 (441)
Q Consensus       370 --~~~~~~wd~~~~~~~~~l~gh~-------------~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~~  422 (441)
                        ...+.+.|..+++....+.-..             ...+.++|+|+++. ++|+.....+.+-++..
T Consensus       169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence              3689999999999888765210             24689999999876 55676677776666544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.33  E-value=2.7e-05  Score=73.52  Aligned_cols=287  Identities=8%  Similarity=-0.037  Sum_probs=150.9

Q ss_pred             CcEEEEeeCCC----cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe--------
Q 013545           56 ERYLLSGASDS----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS--------  123 (441)
Q Consensus        56 ~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs--------  123 (441)
                      .+..++-..++    +|.+.|..+++...         .+. .      |.. +  .+.++| |+.+++.+.        
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~---------~i~-v------G~~-P--~i~~sp-Dg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLG---------HSL-G------AFL-S--LAVAGH-SGSDFALASTSFARSAK   91 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEE---------EEE-E------CTT-C--EEEECT-TSSCEEEEEEEETTTTS
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEE---------EEe-C------CCC-C--ceEECC-CCCEEEEEccccccccc
Confidence            34556665555    88899998765321         111 1      111 2  356666 777776665        


Q ss_pred             --CCCcEEEEECCCCeEEEEEecC--------CeeEEEeeccCCCCccEEEEEeC--CCcEEE--EECCCCceeeeecCC
Q 013545          124 --YDHYVKVWDTNCTRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGTE--DVQVRL--CDIASGAISQTLSGH  189 (441)
Q Consensus       124 --~D~~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~las~s~--d~~I~v--wdl~~~~~~~~l~~h  189 (441)
                        .+++|.+||+.+++.+.++..+        .....+.++|++.   ++.++..  +..+.+  +|+.+   +.++.--
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~  165 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSA  165 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence              4789999999999999988765        1234567777653   3444432  467888  99877   3444311


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-----CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-----AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR  264 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (441)
                       +   ++.+.|+++..+++.+.|+++.+.|+.+     ++... .....-..+..+.   .                   
T Consensus       166 -~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~-~~t~~i~vg~~P~---~-------------------  218 (368)
T 1mda_H          166 -S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA-QCTGAQNCSSQAA---Q-------------------  218 (368)
T ss_dssp             -S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC-CSCTTSCBCSCCE---E-------------------
T ss_pred             -C---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE-EeeeeeeCCCCcc---c-------------------
Confidence             1   1224566666677888899988888875     22110 0000000000000   0                   


Q ss_pred             cCCCCCccccCccccc---CCCCcccccCCCccccc--ccceeeccCeEEEEEccCCCEEEEeec---------CCcEEE
Q 013545          265 SANGNGVRQSSVGRIP---AKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGS---------DSRIRL  330 (441)
Q Consensus       265 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~sgs~---------D~~i~~  330 (441)
                      ...+........+.+.   .................  ....-+......++|+||++++..+..         +..+.+
T Consensus       219 ~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V  298 (368)
T 1mda_H          219 ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence            0000000000000000   00000000000000000  000001111222689999987765432         235669


Q ss_pred             eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEE-eC--CCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV-PC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      +|+.+.+...    .+... ..+..+++++|+..+++ ..  ...+.++|+.+++.+.++..... .+.+++.+
T Consensus       299 iD~~t~~vv~----~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          299 VTASVGQTSG----PISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             EESSSCCEEE----CCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             EECCCCeEEE----EEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence            9999876321    11111 24677889999985444 33  46899999999999999886654 45666554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.33  E-value=1.2e-05  Score=74.38  Aligned_cols=259  Identities=11%  Similarity=0.065  Sum_probs=143.2

Q ss_pred             EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCc
Q 013545           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY  127 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~  127 (441)
                      ++.++ .++ .|..++.++.|..|| .+++..-      .           ...+...+.++...+ ++ .+..++.+  
T Consensus        24 ~~~~d-~~g-~l~v~t~~~~l~~~d-~~g~~~~------~-----------~~~~~~~~~~~~~~~-~g-~l~v~t~~--   79 (330)
T 3hxj_A           24 SPILA-KNG-TIYLGSSNKNLYAIN-TDGSVKW------F-----------FKSGEIIECRPSIGK-DG-TIYFGSDK--   79 (330)
T ss_dssp             CCEEC-TTS-CEECSSTTTTTEEEC-TTSCEEE------S-----------SCGGGEEEECCEETT-TT-EECCSSCE--
T ss_pred             CceEc-cCC-eEEEEcCCCEEEEEC-CCCcEEE------E-----------EecCCCcccceEEec-CC-cEEEecCc--
Confidence            34443 234 477788899999999 6554210      0           001111222333322 33 55555555  


Q ss_pred             EEEEECCCCeEEEEEecCCeeE-EEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEE
Q 013545          128 VKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWIL  206 (441)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l  206 (441)
                      |..+|. +++.+..+....... ...+.     ...+..++.++.+..+|.+ ++.......+...+.++...+++. + 
T Consensus        80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~-----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l-  150 (330)
T 3hxj_A           80 VYAINP-DGTEKWRFDTKKAIVSDFTIF-----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-I-  150 (330)
T ss_dssp             EEEECC-CGGGGGGSCC-----CCEEEE-----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-E-
T ss_pred             EEEECC-CCcEEEEEECCCCcccCceEE-----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-E-
Confidence            888886 554433222222111 11111     2246667778899999998 777666665555666777777765 3 


Q ss_pred             EEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcc
Q 013545          207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR  286 (441)
Q Consensus       207 ~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (441)
                      ..++.++.|..||.. ++....+..                                                       
T Consensus       151 ~vgt~~~~l~~~d~~-g~~~~~~~~-------------------------------------------------------  174 (330)
T 3hxj_A          151 YVGSNDNYLYAINPD-GTEKWRFKT-------------------------------------------------------  174 (330)
T ss_dssp             EEECTTSEEEEECTT-SCEEEEEEC-------------------------------------------------------
T ss_pred             EEEcCCCEEEEECCC-CCEeEEEec-------------------------------------------------------
Confidence            456778999999976 433221110                                                       


Q ss_pred             cccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEE
Q 013545          287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF  366 (441)
Q Consensus       287 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (441)
                                      ....+.++.+.+++...++.   +.|..+| .+++...    ...........+...+++.+.+
T Consensus       175 ----------------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~----~~~~~~~~~~~~~~~~~g~l~v  230 (330)
T 3hxj_A          175 ----------------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKW----NFYAGYWTVTRPAISEDGTIYV  230 (330)
T ss_dssp             ----------------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEE----EECCSSCCCSCCEECTTSCEEE
T ss_pred             ----------------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE----EEccCCcceeceEECCCCeEEE
Confidence                            00123345566777765544   7799998 5554221    1111122233445556666555


Q ss_pred             EeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          367 VPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       367 ~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ......+..++. +++.+..+......+.++.+.+++ .|..++.++.|..+++.
T Consensus       231 ~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          231 TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD  283 (330)
T ss_dssp             EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred             EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence            544567777763 566666665555555666666665 55557778888888874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.30  E-value=0.0002  Score=63.46  Aligned_cols=191  Identities=9%  Similarity=0.056  Sum_probs=114.0

Q ss_pred             eEEEEEecCCee--EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc
Q 013545          137 RVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA  214 (441)
Q Consensus       137 ~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~  214 (441)
                      +.+.++++....  ..+.+..    ..+..+.+.++.|+++|+++++.++.+  -..........+.++.+++..-.++.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~----~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ----GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET----TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCE
T ss_pred             EEEEEEcCCCccccceEEEEC----CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCE
Confidence            345556554433  3444442    356777778889999999999988776  22333332233344556676667899


Q ss_pred             EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcc
Q 013545          215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML  294 (441)
Q Consensus       215 I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (441)
                      +.+||..+.+.+..+...                                                              
T Consensus       118 v~V~D~~Tl~~~~ti~~~--------------------------------------------------------------  135 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYS--------------------------------------------------------------  135 (268)
T ss_dssp             EEEEETTTTEEEEEEECS--------------------------------------------------------------
T ss_pred             EEEEECCcCcEEEEEeCC--------------------------------------------------------------
Confidence            999999887655444210                                                              


Q ss_pred             cccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE--eccCcceEEEeeCCCcEEEEeC--C
Q 013545          295 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR--LQTSKPIQLATTQDPAVVFVPC--M  370 (441)
Q Consensus       295 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~  370 (441)
                             + .+  ..|+  +|++.|+.+..+++|.++|..+.+.... +....  ........+.+. ++. +++..  .
T Consensus       136 -------~-eG--wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s  200 (268)
T 3nok_A          136 -------G-EG--WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA-VQVKLRGQPVELINELECA-NGV-IYANIWHS  200 (268)
T ss_dssp             -------S-CC--CCEE--EETTEEEEECSSSEEEEECTTTCCEEEE-EECEETTEECCCEEEEEEE-TTE-EEEEETTC
T ss_pred             -------C-ce--eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE-EEeCCCCcccccccccEEe-CCE-EEEEECCC
Confidence                   0 01  1233  5677776666788999999998763211 11100  001112233333 554 44443  3


Q ss_pred             CceEEEEccCCceEeeeccc-------------ccceEEEEEcCCCCeEEEee
Q 013545          371 TAVKAFDIWSGKTCLTFRGH-------------YEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       371 ~~~~~wd~~~~~~~~~l~gh-------------~~~v~~v~fspd~~~l~s~s  410 (441)
                      ..+.+.|..+|+.+..+.-.             ..-.+.+|++|+++.|+.+|
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            57888999999987765422             13568999999876655443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.29  E-value=0.00091  Score=59.89  Aligned_cols=219  Identities=11%  Similarity=0.020  Sum_probs=128.9

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      +..+++.+.++.++++-..++.|..+|+............ .....+++.+.  +..+.++-..++.|.+++++......
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~--~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec--CCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4456776644556666667889999998765543322221 24456666653  23455555667889999987543322


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeec--CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGC--DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~--Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      .+.........++++|++..++++...  .+.|..+++... ....+.                                
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~--------------------------------  162 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILA--------------------------------  162 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEE--------------------------------
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEE--------------------------------
Confidence            222223456899999976666665433  356766665421 000000                                


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~  341 (441)
                                                            .........|+++|++.. +++-...++|.++|+...... .
T Consensus       163 --------------------------------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~  203 (267)
T 1npe_A          163 --------------------------------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-K  203 (267)
T ss_dssp             --------------------------------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-E
T ss_pred             --------------------------------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-E
Confidence                                                  000123578999998654 466667789999998753211 1


Q ss_pred             eeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecccc-cceEEEEEcCCCC
Q 013545          342 NFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQ  404 (441)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~  404 (441)
                       +   ......|..++..  +..++++..  ..+..+|..+++.+.++.... .....+++.||+.
T Consensus       204 -~---~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          204 -V---LEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             -E---EECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             -E---ecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence             1   1112334444443  445555433  578889999999888876443 2478888888864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.26  E-value=0.0015  Score=58.45  Aligned_cols=221  Identities=8%  Similarity=0.014  Sum_probs=126.8

Q ss_pred             CcEEEEECCCCeE-----EEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545          126 HYVKVWDTNCTRV-----VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       126 ~~i~iWd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs  199 (441)
                      +.|+.+|+.....     ...+.. ......+++.+.  +..+..+-..++.|.++++.++.....+.........+++.
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~--~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d   87 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV--DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD   87 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT--TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC--CCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEE
Confidence            3677777654331     111111 123345555543  33456666667899999998765443443333567899999


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      |++..++++-...+.|.++|+..... ..+-                                                 
T Consensus        88 ~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~-------------------------------------------------  117 (267)
T 1npe_A           88 HLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF-------------------------------------------------  117 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------------------------------------------------
T ss_pred             ecCCeEEEEECCCCEEEEEEcCCCCE-EEEE-------------------------------------------------
Confidence            97666777766778888888652110 0000                                                 


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeec--CCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGS--DSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  356 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~--D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  356 (441)
                                           .........++++|++.. +++...  .++|..+++.......  +.  ......+..+
T Consensus       118 ---------------------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~~--~~~~~~P~gi  172 (267)
T 1npe_A          118 ---------------------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA--QDNLGLPNGL  172 (267)
T ss_dssp             ---------------------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE--CTTCSCEEEE
T ss_pred             ---------------------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--EE--ECCCCCCcEE
Confidence                                 000123568899996554 444433  4688888876432111  10  1122456778


Q ss_pred             EeeCCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEE-EeecCCcEEEeCCCCCCCC
Q 013545          357 ATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-TGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       357 ~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~-s~s~D~~i~vW~~~~~~~~  426 (441)
                      ++.+++..++++..  ..+..++.........+.+ ......+++.  ++.|+ +....+.|.+.++.+++..
T Consensus       173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCce
Confidence            88888777766544  5788888865433333332 2234566654  44555 4445678999999877643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.24  E-value=6.1e-05  Score=74.46  Aligned_cols=147  Identities=10%  Similarity=0.109  Sum_probs=92.5

Q ss_pred             CcE-EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee-CCCCEEEEEe----------
Q 013545           56 ERY-LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGLFVTGS----------  123 (441)
Q Consensus        56 ~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~l~sgs----------  123 (441)
                      +++ .++...+..|.+-|+.+.+...          ++.+..    +  ...-.+.+.. +++.+++.++          
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~----------ii~ip~----g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg  164 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDA----------ILEIPN----A--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  164 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEE----------EEECSS----C--CSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEee----------EEeCCC----C--CCCcceeeeecCCCcEEEEecccccccCCCC
Confidence            555 4666667779999998765321          111100    0  1122344433 4677777764          


Q ss_pred             --------CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--------------------------
Q 013545          124 --------YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--------------------------  169 (441)
Q Consensus       124 --------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--------------------------  169 (441)
                              .++.+.+.|..+.+++.++...+...-+.+++++   .++.+.+.+                          
T Consensus       165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdG---k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~  241 (595)
T 1fwx_A          165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEG---KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI  241 (595)
T ss_dssp             SSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSS---SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred             cccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCC---CEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence                    3568999999999998888765443344455542   233333322                          


Q ss_pred             ------------CcEEEEECCC--Cce-eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          170 ------------VQVRLCDIAS--GAI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       170 ------------~~I~vwdl~~--~~~-~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                                  +.|.|.|.++  ++. +..+.- .....++.++|||+++++++-.+.+|.++|+.+
T Consensus       242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~  308 (595)
T 1fwx_A          242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  308 (595)
T ss_dssp             HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             eEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc
Confidence                        2477888877  443 444432 234468999999999999988999999999875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.22  E-value=0.001  Score=66.87  Aligned_cols=71  Identities=13%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeC------CCcEEEEECCCCceeeeec
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~------d~~I~vwdl~~~~~~~~l~  187 (441)
                      +..++.++.|+.|..+|.++++.+-........  ..+..+|.-.+. .+..++.      ++.|..+|.++|+.+..+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            457888889999999999999998777654310  011111211122 3444443      7899999999999876654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.17  E-value=0.00012  Score=64.85  Aligned_cols=112  Identities=5%  Similarity=-0.046  Sum_probs=78.9

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      .+.+.  ++.++.+.+.++.|+.+|+++++.+... ++...+...+....  +.+......++.+.++|.++.+.+.+++
T Consensus        59 GL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           59 GLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             eEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            34443  4567788899999999999999998888 76655443444443  2345555678899999999999998886


Q ss_pred             CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeE
Q 013545          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV  228 (441)
Q Consensus       188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~  228 (441)
                      -- ..-+.++  ++++.+++|- .+++|.++|..+.+....
T Consensus       134 ~~-~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~  170 (268)
T 3nok_A          134 YS-GEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGA  170 (268)
T ss_dssp             CS-SCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEE
T ss_pred             CC-CceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEE
Confidence            42 2224444  5667666654 588999999887654443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.09  E-value=0.0026  Score=58.66  Aligned_cols=111  Identities=12%  Similarity=0.009  Sum_probs=68.8

Q ss_pred             eEEEEEccCCCE-EEEeecCCcEEEeeCCCCCc-eeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-----------Cce
Q 013545          307 VTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRN-TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-----------TAV  373 (441)
Q Consensus       307 v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  373 (441)
                      ...|+++|+|++ +++-+..++|..+++..... ....+.  . ... +.-+++.+++.+.++...           ..+
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~--~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v  262 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV--K-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG  262 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE--E-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE--e-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence            457899999985 45556778999999875321 111111  1 122 666788888876555422           235


Q ss_pred             EEEEccCCceEeeecccc----cceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          374 KAFDIWSGKTCLTFRGHY----EYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       374 ~~wd~~~~~~~~~l~gh~----~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      ..+|. +++.+..+....    ..+.++++ .+++.+++....+.|.++++...
T Consensus       263 ~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          263 IKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             EEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            55665 467666665432    45777777 46777777767788988887643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.08  E-value=0.0015  Score=65.66  Aligned_cols=68  Identities=10%  Similarity=0.118  Sum_probs=44.7

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEe------CCCcEEEEECCCCceeeeec
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGT------EDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s------~d~~I~vwdl~~~~~~~~l~  187 (441)
                      ++.++.|+.|.-+|.++|+.+-........  ..+...|.-.+. .+..++      .++.|+.+|.++|+.+..+.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            778889999999999999998776654310  011111111122 344444      37899999999999876654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.02  E-value=0.007  Score=55.29  Aligned_cols=152  Identities=9%  Similarity=0.008  Sum_probs=87.0

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      .....+++++ +++++++-..++.|..||......           ..+..        ...+..+++.+ ++.++++..
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~-----------~~~~~--------~~~p~gia~~~-dG~l~vad~   90 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQ-----------IHATV--------EGKVSGLAFTS-NGDLVATGW   90 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEE-----------EEEEC--------SSEEEEEEECT-TSCEEEEEE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceE-----------EEEeC--------CCCceeEEEcC-CCcEEEEec
Confidence            4567899986 577777777889999998753210           01100        11345566665 666666554


Q ss_pred             CCC--cEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-ee---------eecCC
Q 013545          124 YDH--YVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQ---------TLSGH  189 (441)
Q Consensus       124 ~D~--~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~---------~l~~h  189 (441)
                      ...  .|..+|..+++.........  ........   ....++++-..++.|..+|..+++. +.         ...+.
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~---~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~  167 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL---SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV  167 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES---SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCCCccccCccccc---CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence            432  36667777777544333321  11222221   2233455554578899999876531 11         00111


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      ......+  +|+++.++++-...+.|..+|+.
T Consensus       168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             SCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred             CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence            2234555  78887777777778899999875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.02  E-value=0.0046  Score=58.74  Aligned_cols=229  Identities=6%  Similarity=-0.040  Sum_probs=132.3

Q ss_pred             CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~  203 (441)
                      ....|+..++.................+++.+.  ...++.+-...+.|+.++++.+.....+.........+++.+.+.
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g  171 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD  171 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred             cCccceeeccCCCcEEEEecCCCccEEEEEecC--CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence            446788888876655444433344555666543  334556656678899999987654444433334456788887666


Q ss_pred             cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG  283 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (441)
                      .++++-...+.|.+.++..... ..+                                                      
T Consensus       172 ~lY~~d~~~~~I~~~~~dg~~~-~~l------------------------------------------------------  196 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDGAHR-KVL------------------------------------------------------  196 (386)
T ss_dssp             EEEEEETTTTEEEECBTTSCSC-EEE------------------------------------------------------
T ss_pred             eEEEEcCCCCeEEEEeCCCCce-EEe------------------------------------------------------
Confidence            5666655566676666542100 000                                                      


Q ss_pred             CcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545          284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD  361 (441)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (441)
                                      ..........|+++|.+. .+++-... ++|...++.......  +  .......|.-+++.++
T Consensus       197 ----------------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~--~~~~~~~PnGlavd~~  256 (386)
T 3v65_B          197 ----------------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--I--ADTHLFWPNGLTIDYA  256 (386)
T ss_dssp             ----------------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--E--ECSSCSCEEEEEEEGG
T ss_pred             ----------------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--E--EECCCCCeeeEEEeCC
Confidence                            000112357889998655 44555455 788888887543211  1  0111234667888877


Q ss_pred             CcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545          362 PAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       362 ~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~  430 (441)
                      ...++++-.  ..+..+++........+.........+++ ..+..+++-...+.|...+..++.....+.
T Consensus       257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          257 GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             GTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            776666533  46777776543333333333445678888 445566666667788888866665444433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.97  E-value=0.0098  Score=59.62  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=46.8

Q ss_pred             cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc-eEEEEEcC
Q 013545          324 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSS  401 (441)
Q Consensus       324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~-v~~v~fsp  401 (441)
                      .++.|..||+.+++.... +.   ... ..........+..+++++. +.+..||..+|+.+-++...... -.-+.+..
T Consensus       442 ~~g~l~a~D~~tG~~~W~-~~---~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~  516 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWT-KW---EKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF  516 (571)
T ss_dssp             CCEEEEEECTTTCCEEEE-EE---ESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEE-ec---CCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE
Confidence            457899999998874322 11   111 1111112223445555544 68999999999999877644321 22344567


Q ss_pred             CCCeEEE
Q 013545          402 QDQELYT  408 (441)
Q Consensus       402 d~~~l~s  408 (441)
                      +|+.++.
T Consensus       517 ~G~~yv~  523 (571)
T 2ad6_A          517 KGKQYIG  523 (571)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            8876664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.95  E-value=0.0065  Score=61.05  Aligned_cols=54  Identities=17%  Similarity=0.211  Sum_probs=38.6

Q ss_pred             CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +.+..||+.+|+.+-++..+ .++..-.+...+..++.|+.|+.++.||..+++.
T Consensus       466 G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence            46888999999887665433 2333323334567888899999999999998874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.94  E-value=0.0018  Score=57.36  Aligned_cols=162  Identities=15%  Similarity=0.175  Sum_probs=104.1

Q ss_pred             CCCCc--eeEEEccCCCCcEEEEeeCCC--cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           41 PHKGS--INSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        41 ~H~~~--V~~l~~s~~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      +|...  .-.|.|+  ++.+.+|.+.+|  .|+++|+++++...         . +.+.     .+-.+. .+..   ++
T Consensus        38 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~---------~-~~l~-----~~~Fge-Git~---~g   96 (262)
T 3nol_A           38 PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQ---------Q-IELG-----KRYFGE-GISD---WK   96 (262)
T ss_dssp             ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEE---------E-EECC-----TTCCEE-EEEE---ET
T ss_pred             cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEE---------E-EecC-----Ccccee-EEEE---eC
Confidence            77643  4678897  467788888887  89999999876421         0 0111     010000 1222   23


Q ss_pred             CEEE-EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC----CC-
Q 013545          117 GLFV-TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG----HR-  190 (441)
Q Consensus       117 ~~l~-sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~----h~-  190 (441)
                      +.|. ..-.++.+.++|.++.+.+.+++.++.-.  .++++.  ..++.+ ..++.|.++|.++.+.+.++.-    .. 
T Consensus        97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~--glt~dg--~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~  171 (262)
T 3nol_A           97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW--GLTHND--QYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEEL  171 (262)
T ss_dssp             TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC--CEEECS--SCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred             CEEEEEEeeCCEEEEEECccCcEEEEEECCCCce--EEecCC--CEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence            3444 44458999999999999999998765332  333432  334444 3467899999999988776542    22 


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~  230 (441)
                      ..+..+.|. +++ +++..-.++.|.+-|.++++....++
T Consensus       172 ~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          172 PELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             CCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             cccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEE
Confidence            334457776 554 66666568899999999988777664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.90  E-value=0.016  Score=54.10  Aligned_cols=227  Identities=6%  Similarity=-0.030  Sum_probs=132.8

Q ss_pred             CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~  203 (441)
                      ....|+..++.................+++.+.  ...+..+-...+.|..++++.+.....+.........+++.+.+.
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g  128 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD  128 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             cccceEEEeCCCCeeEEeecCCCceEEEEEecc--ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC
Confidence            345688888876554443333334555666543  334555656678899999987654444433334567888988666


Q ss_pred             cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG  283 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (441)
                      .++++-...+.|.+.++..... ..+                                                      
T Consensus       129 ~ly~~d~~~~~I~~~~~dG~~~-~~l------------------------------------------------------  153 (349)
T 3v64_C          129 KLYWTDSGTSRIEVANLDGAHR-KVL------------------------------------------------------  153 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSC-EEE------------------------------------------------------
T ss_pred             eEEEEcCCCCeEEEEcCCCCce-EEE------------------------------------------------------
Confidence            6767766677888887652110 000                                                      


Q ss_pred             CcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545          284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD  361 (441)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (441)
                                      ..........|+++|.+ ..+.+-... ++|...++.......  +.  ......|.-+++.++
T Consensus       154 ----------------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~--~~~~~~PnGla~d~~  213 (349)
T 3v64_C          154 ----------------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IA--DTHLFWPNGLTIDYA  213 (349)
T ss_dssp             ----------------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SC--CSSCSCEEEEEEETT
T ss_pred             ----------------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EE--ECCCCCcceEEEeCC
Confidence                            00001235788999854 455555555 788888887533211  00  111234677888887


Q ss_pred             CcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545          362 PAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       362 ~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                      ...++++-.  ..+..+++........+.........+++ ..+..+++-...+.|...+..++.....
T Consensus       214 ~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          214 GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEE
Confidence            777666533  46778887543333333333455678888 3455555655567788887655554333

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.88  E-value=0.00066  Score=69.52  Aligned_cols=101  Identities=13%  Similarity=0.022  Sum_probs=56.7

Q ss_pred             EEEEc-cCCCEEEEeecCC-----------cEEEeeCCCCCceeeeeeeEEeccCc-ceEEEeeCCCcEEEEeCC-----
Q 013545          309 GLKVT-EDGMYLLSAGSDS-----------RIRLWDVESGRNTLVNFETVRLQTSK-PIQLATTQDPAVVFVPCM-----  370 (441)
Q Consensus       309 ~l~~s-~dg~~l~sgs~D~-----------~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----  370 (441)
                      ++.|. .+++.++.|+.++           .|.+||..+..-...  ....+.... ....+..+++.+++.++.     
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~  480 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF--ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP  480 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE--CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE--ccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence            34443 3677788887543           678888876542211  000111111 123345568888777652     


Q ss_pred             -------CceEEEEccCCce--EeeecccccceEEEEEcCCCCeEEEeec
Q 013545          371 -------TAVKAFDIWSGKT--CLTFRGHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       371 -------~~~~~wd~~~~~~--~~~l~gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                             ..+.+||..+.+-  +..+........+..+.|||+.++.||.
T Consensus       481 ~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          481 FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                   3578999866432  2222222223345667899999999885

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.82  E-value=0.0069  Score=53.03  Aligned_cols=163  Identities=16%  Similarity=0.138  Sum_probs=105.0

Q ss_pred             CCCCc--eeEEEccCCCCcEEEEeeCCC--cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           41 PHKGS--INSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        41 ~H~~~--V~~l~~s~~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ||...  .-.|.|+.  +.+..|.+.+|  .|+++|+++++...         . +.+.     .+..+. .+...  ++
T Consensus        16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~---------~-~~l~-----~~~fge-Gi~~~--~~   75 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQ---------R-AEVP-----PPYFGA-GIVAW--RD   75 (243)
T ss_dssp             ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEE---------E-EECC-----TTCCEE-EEEEE--TT
T ss_pred             CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEE---------E-EeCC-----CCccee-EEEEe--CC
Confidence            78754  55899973  66778888865  89999999876421         0 0010     111111 12221  33


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC--CC---C
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HR---D  191 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~--h~---~  191 (441)
                      .+....-.++.+.++|.++.+.+.+++.++.-..+  +++.  ..++.| ..++.|.++|.++.+.+.++.-  +.   .
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg--~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSDD--SHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EECS--SCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeCC--CEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence            34455556899999999999999999876544333  3332  334444 3478899999999988776642  21   2


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~  230 (441)
                      .+.-+.+. +++ +++..-.+..|.+-|.++++....++
T Consensus       151 ~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          151 NLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             CEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             cceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEE
Confidence            34566665 454 66665567899999999988777664

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.73  E-value=0.065  Score=55.96  Aligned_cols=284  Identities=8%  Similarity=0.100  Sum_probs=157.1

Q ss_pred             eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCc-ccc-eeEEEEeeCCCCEEEEEe
Q 013545           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH-KYA-ISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-V~~~~~~~~~~~~l~sgs  123 (441)
                      |++|..++ ++++.+ ++. +.|.+||.++.....                 ...++ ... |.++...+ ++ .+..+.
T Consensus       133 i~~i~~d~-~g~lwi-~t~-~gl~~~~~~~~~~~~-----------------~~~~~~~~~~i~~i~~d~-~g-~lwigt  190 (795)
T 4a2l_A          133 VNGIEEIS-PEQLLI-STP-EGLIMFDIKESKFID-----------------DSFSTAMHKTIASTLYRQ-GD-QIYIGT  190 (795)
T ss_dssp             CCEEEEEE-TTEEEE-EET-TEEEEEETTTTEEEC-----------------SSSCHHHHTCCEEEEEEE-TT-EEEEEE
T ss_pred             EEEEEECC-CCCEEE-EEC-CceEEEECCCCEEEe-----------------ccCCCCCCcceEEEEECC-CC-CEEEEE
Confidence            88888764 455444 444 568899976542110                 00011 112 55555544 44 454566


Q ss_pred             CCCcEEEEECCCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC-------CCCCeE
Q 013545          124 YDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-------HRDGIM  194 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~-------h~~~v~  194 (441)
                      .++-|..||..+++......  ....+.++....  .+  .|..|+.++-+.+||.++++.......       ....|.
T Consensus       191 ~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g--~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~  266 (795)
T 4a2l_A          191 STDGLYTYSITQKTFEKVIPILGTKQIQAILQQS--PT--RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIR  266 (795)
T ss_dssp             SSSCEEEEETTTCCEEECC----CCCEEEEEEEE--TT--EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEE
T ss_pred             CCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC--CC--CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEE
Confidence            66568899987766432211  122344443332  22  234455454599999988764432211       135689


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      ++...+++. + ..|+.+ -|.+||..++... .+.....                                        
T Consensus       267 ~i~~d~~g~-l-Wigt~~-Gl~~~~~~~~~~~-~~~~~~~----------------------------------------  302 (795)
T 4a2l_A          267 SLAMDSQNR-L-WIGTFN-DLNIYHEGTDSFA-SYSSNPV----------------------------------------  302 (795)
T ss_dssp             EEEECTTSC-E-EEEESS-CEEEEETTTTEEE-EECCCTT----------------------------------------
T ss_pred             EEEEcCCCC-E-EEEeCC-hhheEcCCCCeEE-EEecCCC----------------------------------------
Confidence            999888876 3 334444 6999997654321 1100000                                        


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE----Eecc
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV----RLQT  350 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~----~~~~  350 (441)
                                     .+        ..-....|.+|...++|..-+ |+.++-|.+|+..+.+-.  .+...    .+..
T Consensus       303 ---------------~~--------~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~--~~~~~~~~~~l~~  356 (795)
T 4a2l_A          303 ---------------EN--------GSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNRFK--NIRNIPYKNSLSD  356 (795)
T ss_dssp             ---------------ST--------TSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGGSSE--EECCCTTSSSCSC
T ss_pred             ---------------CC--------CCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcccce--EEcCCCCCCCCCC
Confidence                           00        000124588999999887654 667777999987654321  11100    0111


Q ss_pred             CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecc--------cccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          351 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG--------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~g--------h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      .....+....++.+.+......+..|+..+++...-...        ....|.+++..++|+.|..|..++-|.++++.+
T Consensus       357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             SSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             CeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            223345555666666544456888898876654332111        235699999998888455566666788898877


Q ss_pred             CCC
Q 013545          423 HIS  425 (441)
Q Consensus       423 ~~~  425 (441)
                      ++.
T Consensus       437 ~~~  439 (795)
T 4a2l_A          437 GQV  439 (795)
T ss_dssp             CCE
T ss_pred             CcE
Confidence            653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.031  Score=53.79  Aligned_cols=112  Identities=11%  Similarity=0.030  Sum_probs=61.8

Q ss_pred             eeEEEEee-CCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC----cEEEEECCCC
Q 013545          106 ISSAIWYP-VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV----QVRLCDIASG  180 (441)
Q Consensus       106 V~~~~~~~-~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~----~I~vwdl~~~  180 (441)
                      ...+++.| .++ .|..+...+.|+.+|+..+..............+++.+.+  ..++++...++    .+.+.+. .+
T Consensus       139 P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G--~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          139 AVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEA--DSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTS--SEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCC--CEEEEEeCCCCcccceEEEEeC-CC
Confidence            34566664 234 4444444488999999877765444433445666776643  33444443222    2333443 33


Q ss_pred             cee--eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          181 AIS--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       181 ~~~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      ...  ..+.. ......++++|++..++++-..++.|..+|...
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            222  22221 233467889994344666665678888888764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.63  E-value=0.088  Score=54.93  Aligned_cols=282  Identities=10%  Similarity=0.080  Sum_probs=160.3

Q ss_pred             eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC
Q 013545           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D  125 (441)
                      |.++..++ +++ |.-|..++.|..||..+.....       .      .   ...+...|.++...+ ++ .+..|..+
T Consensus       175 i~~i~~d~-~g~-lwigt~~~Gl~~~~~~~~~~~~-------~------~---~~~~~~~i~~i~~d~-~g-~lwigt~~  234 (795)
T 4a2l_A          175 IASTLYRQ-GDQ-IYIGTSTDGLYTYSITQKTFEK-------V------I---PILGTKQIQAILQQS-PT-RIWVATEG  234 (795)
T ss_dssp             CEEEEEEE-TTE-EEEEESSSCEEEEETTTCCEEE-------C------C-------CCCEEEEEEEE-TT-EEEEEEBS
T ss_pred             eEEEEECC-CCC-EEEEECCCCEEEEeCCCCeEEE-------e------c---CCCCCCeeEEEEEcC-CC-CEEEEECC
Confidence            88888864 454 4446666668899976543100       0      0   001223466665544 44 45455555


Q ss_pred             CcEEEEECCCCeEEEEEec---------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC-------C
Q 013545          126 HYVKVWDTNCTRVVMNFKM---------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-------H  189 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~-------h  189 (441)
                      +-|.+||..+++... +..         ...+.++....  .+.  |..|+.+ -|.+||.+++........       .
T Consensus       235 ~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~--~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~  308 (795)
T 4a2l_A          235 AGLFLINPKTKEIKN-YLHSPSNPKSISSNYIRSLAMDS--QNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLS  308 (795)
T ss_dssp             SCEEEEETTTTEEEE-ECCCTTCTTSCSCSBEEEEEECT--TSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred             CCeEEEeCCCCeEEE-eecCCCCccccCCCeEEEEEEcC--CCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCC
Confidence            558899988766433 221         12344444333  222  4445555 599999888765432211       2


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ...|.++...+++.  |..|+.++-|..||..... +..+.....                                   
T Consensus       309 ~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~-~~~~~~~~~-----------------------------------  350 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNR-FKNIRNIPY-----------------------------------  350 (795)
T ss_dssp             SSCEEEEEECTTSC--EEEEESSSCEEEECGGGGS-SEEECCCTT-----------------------------------
T ss_pred             CCcEEEEEEeCCcC--EEEEECCCCeEEeCCCccc-ceEEcCCCC-----------------------------------
Confidence            35689999988876  4557777889999865421 111100000                                   


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE---
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV---  346 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~---  346 (441)
                                           .        ..-....|.++...++|..-+ |+.++-|..||..+++...  +...   
T Consensus       351 ---------------------~--------~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~--~~~~~~~  398 (795)
T 4a2l_A          351 ---------------------K--------NSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTS--YTLQEDE  398 (795)
T ss_dssp             ---------------------S--------SSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEE--ECCC---
T ss_pred             ---------------------C--------CCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEE--EecCCCC
Confidence                                 0        000123588999988887655 7777779999987654211  1100   


Q ss_pred             ---EeccCcceEEEeeCCCc-EEEEeCCCceEEEEccCCceEeeec----ccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545          347 ---RLQTSKPIQLATTQDPA-VVFVPCMTAVKAFDIWSGKTCLTFR----GHYEYVNCCCFSSQDQELYTGGNDRQILVW  418 (441)
Q Consensus       347 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~wd~~~~~~~~~l~----gh~~~v~~v~fspd~~~l~s~s~D~~i~vW  418 (441)
                         .+.......+....++. +.+.....++..+|..+++...-..    .+...|.++...++|+..+...  +-+.+|
T Consensus       399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~  476 (795)
T 4a2l_A          399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRF  476 (795)
T ss_dssp             ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEE
T ss_pred             cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEE
Confidence               01123334455566777 5544444789999987776433211    2345799999999888666543  447888


Q ss_pred             CCCCCCC
Q 013545          419 CPSRHIS  425 (441)
Q Consensus       419 ~~~~~~~  425 (441)
                      ++.+++.
T Consensus       477 ~~~~~~~  483 (795)
T 4a2l_A          477 NPEQRSF  483 (795)
T ss_dssp             ETTTTEE
T ss_pred             eCCCCeE
Confidence            8876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.58  E-value=0.0041  Score=63.67  Aligned_cols=77  Identities=6%  Similarity=0.157  Sum_probs=50.5

Q ss_pred             EEEeeCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEEecC----------CeeEEEeeccCCCC
Q 013545          109 AIWYPVDTGLFVTGSYDH-------------------YVKVWDTNCTRVVMNFKMP----------GKVYRTAMSPLAAS  159 (441)
Q Consensus       109 ~~~~~~~~~~l~sgs~D~-------------------~i~iWd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  159 (441)
                      +++.+ +.++++.++.++                   .|..+|..+++.+-.++..          .......+..++..
T Consensus       235 ~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          235 MAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             EEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             eEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            34444 456777776665                   4999999999998877653          11111112222222


Q ss_pred             ccEEEEEeCCCcEEEEECCCCceeeee
Q 013545          160 HMLIAAGTEDVQVRLCDIASGAISQTL  186 (441)
Q Consensus       160 ~~~las~s~d~~I~vwdl~~~~~~~~l  186 (441)
                      ..+++.++.++.++++|.++|+.+...
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEEECCCCEEEEEECCCCCEeccc
Confidence            236888899999999999999987443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.54  E-value=0.05  Score=49.84  Aligned_cols=221  Identities=8%  Similarity=-0.033  Sum_probs=127.1

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC----CceeeeecCCCCCeEEEEEecC
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS----GAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~----~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      ..|+..|+.................+.+.+.  ...+..+-..++.|..+++++    ......+.........+++.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~--~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeC--CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            4688888887665544443344555666553  234566666678999999876    2222223333345678888876


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      +..++++-...+.|.+.|+........+                                                    
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~----------------------------------------------------  115 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLF----------------------------------------------------  115 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEE----------------------------------------------------
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEE----------------------------------------------------
Confidence            6656677666788888886531110000                                                    


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                         .........++++|.+.. +++.... ++|...++.......  +.  ......|..+++.
T Consensus       116 -------------------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~--~~~~~~P~gla~d  172 (316)
T 1ijq_A          116 -------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TENIQWPNGITLD  172 (316)
T ss_dssp             -------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE--CSSCSCEEEEEEE
T ss_pred             -------------------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EE--ECCCCCceEEEEe
Confidence                               000123578899986554 4444333 688888876432111  10  1123456778888


Q ss_pred             CCCcEEEEeCC--CceEEEEccCCceEeee-c--ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          360 QDPAVVFVPCM--TAVKAFDIWSGKTCLTF-R--GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       360 ~~~~~~~~~~~--~~~~~wd~~~~~~~~~l-~--gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      +++..++++..  ..+..+|+.. ....++ .  +.......+++. .+..+++-...+.|...+..++..
T Consensus       173 ~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          173 LLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             ccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence            87777766543  4788888753 322332 2  123345778885 355666666677888888766553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.54  E-value=0.046  Score=52.61  Aligned_cols=114  Identities=14%  Similarity=0.057  Sum_probs=60.0

Q ss_pred             eeEEEEeeC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC---C-cEEEEECCCC
Q 013545          106 ISSAIWYPV-DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---V-QVRLCDIASG  180 (441)
Q Consensus       106 V~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d---~-~I~vwdl~~~  180 (441)
                      ...+++.+. +...|..+...+.|+.+|+.++..............+++.+.+  . ++++...+   . .+...+...+
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG--~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG--D-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC--C-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC--C-EEEEcCCCCcccceEEEEECCCC
Confidence            446677653 2334444433389999999888766544333345666776643  2 44443221   1 1333333222


Q ss_pred             cee-eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545          181 AIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (441)
Q Consensus       181 ~~~-~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~  223 (441)
                      ... ..+. .......++++|++..++++-..++.|+.+|..++
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence            110 1111 22334668888833346666556678888887644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.50  E-value=0.07  Score=50.48  Aligned_cols=216  Identities=10%  Similarity=0.049  Sum_probs=120.8

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      +..+.+.+.++.++.+-...+.|..+++........+... .....+++.+.  ...+..+-...+.|.+.+++......
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT--TTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC--CCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            4567777655656667667788999998766543322211 11223444432  33455555566788888887554433


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      .+.........+++.|.+..++++-... +.|...++..... ..+                                  
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~----------------------------------  240 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RII----------------------------------  240 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE----------------------------------
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEE----------------------------------
Confidence            4444446678999999877666664444 5666666542100 000                                  


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                                                          ........+.|+|+|++. ..++-+..++|..+|+........ 
T Consensus       241 ------------------------------------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~-  283 (386)
T 3v65_B          241 ------------------------------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV-  283 (386)
T ss_dssp             ------------------------------------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE-
T ss_pred             ------------------------------------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE-
Confidence                                                000012357899997654 455666778899999875432111 


Q ss_pred             eeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeecccccceEEEEEc
Q 013545          343 FETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS  400 (441)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs  400 (441)
                      +   ......|..+++. ++ .++++  ....|..++..+|+...++.........|++.
T Consensus       284 ~---~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~  338 (386)
T 3v65_B          284 I---SQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL  338 (386)
T ss_dssp             E---CSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred             E---ECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence            1   1112345555663 33 34443  23567777777777766665443444455443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.46  E-value=0.11  Score=51.98  Aligned_cols=80  Identities=19%  Similarity=0.133  Sum_probs=48.6

Q ss_pred             cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce-EEEEEcC
Q 013545          324 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV-NCCCFSS  401 (441)
Q Consensus       324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v-~~v~fsp  401 (441)
                      .+++|..||+.+++..... .   ... ..........+.+++.++. ..++.||..+|+.+-+++...+.+ .-+.+..
T Consensus       464 ~~G~l~A~D~~tG~~~W~~-~---~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEH-K---EHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEE-E---ESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CcceEEEEECCCCCEEEEe-c---CCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEE
Confidence            4788999999998753321 1   111 1111111123456666654 689999999999998887654322 2266778


Q ss_pred             CCCeEEE
Q 013545          402 QDQELYT  408 (441)
Q Consensus       402 d~~~l~s  408 (441)
                      ||+.+++
T Consensus       539 ~G~qYv~  545 (582)
T 1flg_A          539 DGEQYLG  545 (582)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            8875543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.46  E-value=0.11  Score=52.02  Aligned_cols=79  Identities=11%  Similarity=0.071  Sum_probs=46.3

Q ss_pred             cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce-EEEEEcC
Q 013545          324 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV-NCCCFSS  401 (441)
Q Consensus       324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v-~~v~fsp  401 (441)
                      .++.|..||+.+++..... .   ... ....-.....+.++|.++. ..++.||..+|+++-+++...+.+ .-+.+..
T Consensus       451 ~~G~l~A~D~~tG~~~W~~-~---~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~  525 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEK-M---ERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH  525 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEE-E---ESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CcCeEEEEECCCCCEEeEe-c---CCC-CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEe
Confidence            4578999999998753321 1   111 0111112224556666654 689999999999998776443222 2245567


Q ss_pred             CCCeEE
Q 013545          402 QDQELY  407 (441)
Q Consensus       402 d~~~l~  407 (441)
                      ||+.++
T Consensus       526 ~G~qyv  531 (599)
T 1w6s_A          526 KGTQYV  531 (599)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            887543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.44  E-value=0.057  Score=49.08  Aligned_cols=204  Identities=11%  Similarity=0.072  Sum_probs=109.4

Q ss_pred             EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC--cEE
Q 013545          139 VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIR  216 (441)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--~I~  216 (441)
                      +..+........+++.+.   ..++++...++.|..||.+.. ....+. -...+..+++.++++ ++++.....  .|.
T Consensus        25 ~~~~p~~~~pegia~~~~---g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~v~   98 (306)
T 2p4o_A           25 ITSFPVNTFLENLASAPD---GTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIPVV   98 (306)
T ss_dssp             EEEECTTCCEEEEEECTT---SCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCEEE
T ss_pred             eEeCCCCCCcceEEECCC---CCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCc-EEEEeccCCcceEE
Confidence            344433333445566553   235555556788999998754 332222 234578999999987 555543322  355


Q ss_pred             EEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccc
Q 013545          217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSS  296 (441)
Q Consensus       217 iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (441)
                      .+|..+++.......                                                           +     
T Consensus        99 ~~d~~~g~~~~~~~~-----------------------------------------------------------~-----  114 (306)
T 2p4o_A           99 SLVKSDGTVETLLTL-----------------------------------------------------------P-----  114 (306)
T ss_dssp             EEECTTSCEEEEEEC-----------------------------------------------------------T-----
T ss_pred             EEcCCCCeEEEEEeC-----------------------------------------------------------C-----
Confidence            566554432111100                                                           0     


Q ss_pred             cccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee-E---E--eccCcceEEEeeCCCcEEEEeCC
Q 013545          297 QDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET-V---R--LQTSKPIQLATTQDPAVVFVPCM  370 (441)
Q Consensus       297 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~  370 (441)
                            .......+++.+++..+++-..+++|.++|..+++........ .   .  .....+.-+  ++++..++++..
T Consensus       115 ------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          115 ------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             ------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             ------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence                  0001123444555655666556788888887654211100000 0   0  000122223  667766666543


Q ss_pred             --CceEEEEccC-Cce--EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          371 --TAVKAFDIWS-GKT--CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       371 --~~~~~wd~~~-~~~--~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                        ..+..+++.. ++.  ...+. .......++++++|+.+++....+.|.++++.
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence              5788888764 332  11111 11346779999999888777777889999986

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.39  E-value=0.098  Score=49.71  Aligned_cols=234  Identities=8%  Similarity=-0.022  Sum_probs=133.9

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC----ceeeeecCCCCCe
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQTLSGHRDGI  193 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~----~~~~~l~~h~~~v  193 (441)
                      +|+.+ ....|+..|+.................+++.+.  ...+..+-..++.|+.+++...    .....+.......
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~--~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeec--cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            34333 346888889877655444444445566666653  2345555556778999998752    2233333345567


Q ss_pred             EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ  273 (441)
Q Consensus       194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (441)
                      ..+++.+.+..++++-...+.|.+.|+........+                                            
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--------------------------------------------  197 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------------------------------------------  197 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------------------------------------------
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------------------------------------------
Confidence            889998865556777666777887776532110000                                            


Q ss_pred             cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeec-CCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGS-DSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~-D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                                 .........|+++|.+.+ +.+-.. ..+|...++........    ......
T Consensus       198 ---------------------------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----~~~~l~  246 (400)
T 3p5b_L          198 ---------------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----VTENIQ  246 (400)
T ss_dssp             ---------------------------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE----ECSSCS
T ss_pred             ---------------------------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE----EECCCC
Confidence                                       001123578899986544 444433 47888888875432111    011224


Q ss_pred             cceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecc--cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545          352 KPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRG--HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~g--h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~  427 (441)
                      .|.-+++.++...++++-.  ..+..+|+........+.+  .......|++. .+..+++....+.|..++..++....
T Consensus       247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceE
Confidence            5677889988777777643  4678888754333222222  23345677773 34555666666788888876665544


Q ss_pred             ccC
Q 013545          428 VDA  430 (441)
Q Consensus       428 ~~~  430 (441)
                      .+.
T Consensus       326 ~i~  328 (400)
T 3p5b_L          326 LLA  328 (400)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.36  E-value=0.065  Score=49.04  Aligned_cols=110  Identities=13%  Similarity=0.103  Sum_probs=69.5

Q ss_pred             eEEEEEcc-CCCEEEEeec-----------------CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe
Q 013545          307 VTGLKVTE-DGMYLLSAGS-----------------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP  368 (441)
Q Consensus       307 v~~l~~s~-dg~~l~sgs~-----------------D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (441)
                      ...+++.+ +|...++-..                 ++.|..||..+++...  +   ......+.-+++++++..++++
T Consensus       128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~--~---~~~~~~p~gia~~~dg~~lyv~  202 (322)
T 2fp8_A          128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL--L---LKELHVPGGAEVSADSSFVLVA  202 (322)
T ss_dssp             EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE--E---EEEESCCCEEEECTTSSEEEEE
T ss_pred             cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE--e---ccCCccCcceEECCCCCEEEEE
Confidence            56789999 8987776432                 4678888887654211  1   1112345667889998866655


Q ss_pred             CC--CceEEEEccCCc--eEeeecccccceEEEEEcCCCCeEEEeec----------CCcEEEeCCCC
Q 013545          369 CM--TAVKAFDIWSGK--TCLTFRGHYEYVNCCCFSSQDQELYTGGN----------DRQILVWCPSR  422 (441)
Q Consensus       369 ~~--~~~~~wd~~~~~--~~~~l~gh~~~v~~v~fspd~~~l~s~s~----------D~~i~vW~~~~  422 (441)
                      ..  ..+..+++....  ....+....+ ...+++.++|++.++...          .+.|..+++..
T Consensus       203 d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G  269 (322)
T 2fp8_A          203 EFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG  269 (322)
T ss_dssp             EGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred             eCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC
Confidence            32  578888876421  1122211223 688999999987776644          45688888753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.23  E-value=0.033  Score=56.76  Aligned_cols=52  Identities=19%  Similarity=0.210  Sum_probs=34.2

Q ss_pred             cEEEEECCCCcee--eeecC-CCCCeEEEEEecCCCcEEEEee-cCCcEEEEEcCCC
Q 013545          171 QVRLCDIASGAIS--QTLSG-HRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRA  223 (441)
Q Consensus       171 ~I~vwdl~~~~~~--~~l~~-h~~~v~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~  223 (441)
                      .+.+||+.+++-.  ..+.. +.....++++.++++ +++.|+ .++.+.+||..+.
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecCcCC
Confidence            5889999888632  22222 233334577778876 677777 4568999998754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.23  E-value=0.26  Score=51.21  Aligned_cols=287  Identities=10%  Similarity=0.036  Sum_probs=151.6

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs  123 (441)
                      ..|.+|..++ ++.+.+ |..+ .+.+||..+.....    ....      ......-....|.++...+ ++ .|..|.
T Consensus       211 ~~i~~i~~d~-~g~lwi-gt~~-Gl~~~d~~~~~~~~----~~~~------~~~~~~l~~~~i~~i~~d~-~g-~lWigt  275 (781)
T 3v9f_A          211 NDVRCIYKDT-NGNIWI-GTSK-GLALFNANTETFTN----FHNN------PGNIHGALSSYIFSIKQLK-DN-KLWIAT  275 (781)
T ss_dssp             SSEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEC---------------------CCCCEEEEEECT-TS-EEEEEE
T ss_pred             CceeEEEEcC-CCCEEE-EeCC-cHheECCCCCcEEE----EEcC------CCccccccCceEEEEEECC-CC-CEEEEe
Confidence            4688888874 455443 4444 68899976543110    0000      0000001123466665543 34 566666


Q ss_pred             CCCcEEEEECCCCeEEEEEe--------------c-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-
Q 013545          124 YDHYVKVWDTNCTRVVMNFK--------------M-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-  187 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-  187 (441)
                      ..+-|.++|..++.......              + ...+.++....  .+  .|-.|+.++-|.+++..++....... 
T Consensus       276 ~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~  351 (781)
T 3v9f_A          276 ELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FN--NIWIGTWGGGINFISNAPPTFHTWSYS  351 (781)
T ss_dssp             SSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SC--CEEEEEBSSCEEEECSSCCSCEEEC--
T ss_pred             CCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CC--CEEEEecCCeEEEeCCCCCcceeeccC
Confidence            65678889987665422111              1 12244333332  22  35556666779999987765332210 


Q ss_pred             --------CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          188 --------GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       188 --------~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                              -....|.++...+++.  |..|+.++-|..||..++.. ..+.   .                         
T Consensus       352 ~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~-~~~~---~-------------------------  400 (781)
T 3v9f_A          352 PTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVA-IYNK---E-------------------------  400 (781)
T ss_dssp             --CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEE-ECC------------------------------
T ss_pred             ccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeE-EEcc---C-------------------------
Confidence                    1235688998888775  34566677799998754211 0000   0                         


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  339 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~  339 (441)
                                                     +        .......|.++...++|...+ |+.++-|..+|..+++..
T Consensus       401 -------------------------------~--------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          401 -------------------------------N--------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             ------------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             -------------------------------C--------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence                                           0        000124588888888887665 666667899988765421


Q ss_pred             eeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeeccc-----ccceEEEEEcCCCCeEEEeecCCc
Q 013545          340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH-----YEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh-----~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                        .+.........+..+...+++.+.+.. ...+..++..+++........     ...|.+++..++|+..+.. .++-
T Consensus       441 --~~~~~~~~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~G  516 (781)
T 3v9f_A          441 --IIELEKNELLDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGG  516 (781)
T ss_dssp             --ECCSTTTCCCCEEEEEECTTSEEEEEE-TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSC
T ss_pred             --EeccCCCCCCeEEEEEECCCCCEEEEE-CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCC
Confidence              111000011223334444555554443 477888888766543222111     3579999999988776644 3333


Q ss_pred             EEEeCCCCCC
Q 013545          415 ILVWCPSRHI  424 (441)
Q Consensus       415 i~vW~~~~~~  424 (441)
                      +..+++.+++
T Consensus       517 l~~~~~~~~~  526 (781)
T 3v9f_A          517 VGIYTPDMQL  526 (781)
T ss_dssp             EEEECTTCCE
T ss_pred             EEEEeCCCCe
Confidence            6678876554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.22  E-value=0.18  Score=49.07  Aligned_cols=112  Identities=12%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             eEEEEeeC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC----eeEEEee-------ccCCCCccEEEEEeCCC----
Q 013545          107 SSAIWYPV-DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAM-------SPLAASHMLIAAGTEDV----  170 (441)
Q Consensus       107 ~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~las~s~d~----  170 (441)
                      ..+++.|. ++.++++-...+.|++.|++++.+........    ....+++       .+..  ..++++...++    
T Consensus       142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G--~~lyvad~~~~~~~~  219 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA--EYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT--CEEEEEECCCTTGGG
T ss_pred             CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC--CEEEEEeCCCCCccc
Confidence            35666653 34445554445789999998887765544321    2456666       5543  33455444332    


Q ss_pred             --cEEEEECCC-Ccee-----eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          171 --QVRLCDIAS-GAIS-----QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       171 --~I~vwdl~~-~~~~-----~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                        .|.+.+... +...     +.+... .....++++|++..++++-..++.|..+|+.
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence              266776444 2322     222211 2335778899766677777778889988875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.21  E-value=0.27  Score=50.99  Aligned_cols=223  Identities=8%  Similarity=-0.024  Sum_probs=124.6

Q ss_pred             CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC----ceeeeecCCCCCeEEEEEe
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~----~~~~~l~~h~~~v~~v~fs  199 (441)
                      ....|+..++.................+++.+.  ...++.+-...+.|+.+++...    .....+.........|++.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~--~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeeccc--CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            446788888876554443333334455555543  2345555566778998998753    2233344345566789998


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      +.++.++++-...+.|.+.++.... ..++-                                                 
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~-------------------------------------------------  509 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------------------------------------------------  509 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------------------------------------------------
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCe-EEEEE-------------------------------------------------
Confidence            8877677777777888888875321 11100                                                 


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                           ........+|+++|.+ .++++-... .+|...++.......  +  .......|.-++
T Consensus       510 ---------------------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--l--v~~~l~~P~GLa  564 (791)
T 3m0c_C          510 ---------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--L--VTENIQWPNGIT  564 (791)
T ss_dssp             ---------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--E--ECSSCSCEEEEE
T ss_pred             ---------------------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--E--EeCCCCCceEEE
Confidence                                 0011236789999874 444554333 788888887543211  1  111224577788


Q ss_pred             eeCCCcEEEEeCC--CceEEEEccCCceEeeeccc--ccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          358 TTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGH--YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       358 ~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh--~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      +.+....++++-.  ..|..+++........+.++  -.....|++..+ +.+++-...+.|..-+..++.
T Consensus       565 vD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCC
T ss_pred             EecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCc
Confidence            8877777777633  46777777544333333322  223456666432 344454445667666655554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.20  E-value=0.11  Score=47.65  Aligned_cols=214  Identities=9%  Similarity=0.020  Sum_probs=116.8

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE---EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV---VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~  182 (441)
                      +..+.|.+.++.++.+-...+.|..+++.....   +....+ .....+++.+.  ...+..+-...+.|.+++++....
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-~~p~glavd~~--~g~ly~~d~~~~~I~~~~~dG~~~  113 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-LSPDGLACDWL--GEKLYWTDSETNRIEVSNLDGSLR  113 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-SCCCEEEEETT--TTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-CCccEEEEEcC--CCeEEEEECCCCEEEEEECCCCcE
Confidence            445677765566667767778899998876531   111111 12233444432  334555555677899999875543


Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEee-cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545          183 SQTLSGHRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP  261 (441)
Q Consensus       183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (441)
                      ...+.........+++.|.+..++++-. ..+.|...++.... ...+                                
T Consensus       114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~--------------------------------  160 (318)
T 3sov_A          114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFII--------------------------------  160 (318)
T ss_dssp             EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEE--------------------------------
T ss_pred             EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEE--------------------------------
Confidence            3333344566789999987665655532 24556666543110 0000                                


Q ss_pred             CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCcee
Q 013545          262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                                 .           .......+.|+++|++. ..++-+..++|..+|+.......
T Consensus       161 ---------------------------~-----------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~  202 (318)
T 3sov_A          161 ---------------------------I-----------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA  202 (318)
T ss_dssp             ---------------------------E-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ---------------------------E-----------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE
Confidence                                       0           00012357899998655 45566677889999987533211


Q ss_pred             eeeeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeecccccceEEEEE
Q 013545          341 VNFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                        +.  ......|..+++..  ..+++.  ....+..++..+|+...++........+|++
T Consensus       203 --~~--~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v  257 (318)
T 3sov_A          203 --VV--KGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA  257 (318)
T ss_dssp             --EE--CSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred             --Ee--cCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence              11  11123455555543  334443  3357888888888766555433233334443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.20  E-value=0.13  Score=47.12  Aligned_cols=227  Identities=7%  Similarity=-0.014  Sum_probs=126.9

Q ss_pred             CCcEEEEECCCCe--EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-eeecCCCCCeEEEEEecC
Q 013545          125 DHYVKVWDTNCTR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       125 D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~-~~l~~h~~~v~~v~fsp~  201 (441)
                      ...|+..|+....  .............+.+.+.  ...+..+-..++.|..++++.+... ..+.........+++.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~--~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~   89 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS--HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGG--GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeC--CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence            4578888887653  1111111112334445442  2345556566778999998776422 222223345568888876


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      +..++++-...+.|.++++.... ...+-                                                   
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG~~-~~~l~---------------------------------------------------  117 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDGSL-RKVLF---------------------------------------------------  117 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCS-CEEEE---------------------------------------------------
T ss_pred             CCeEEEEECCCCEEEEEECCCCc-EEEEE---------------------------------------------------
Confidence            66666776667788888865211 00000                                                   


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEe-ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSA-GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                         .........|++.|.+.+ +.+- +...+|...++.......  +  .......|.-+++.
T Consensus       118 -------------------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~--~~~~l~~Pnglavd  174 (318)
T 3sov_A          118 -------------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--I--INSEIYWPNGLTLD  174 (318)
T ss_dssp             -------------------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--E--ECSSCSCEEEEEEE
T ss_pred             -------------------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--E--EECCCCCccEEEEe
Confidence                               000123568889886544 4443 235778888876432211  1  01112456778899


Q ss_pred             CCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          360 QDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       360 ~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      ++...++.+-.  ..+..+++........+.+.......+++.. +..+++-...+.|...++.++.....+
T Consensus       175 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          175 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            87777666533  5677888754332222333445567788753 455666656678888888776654443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.18  E-value=0.15  Score=47.40  Aligned_cols=215  Identities=10%  Similarity=0.048  Sum_probs=120.0

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      +..+.+.+.++.++.+-...+.|..+++............ .....+++.+.  +..+..+-...+.|.+.+++......
T Consensus        75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC--CCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            4567777655656666667788999998765533322211 12234444432  33455555667789999987654433


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      .+.........+++.|.+..++++-... +.|...++.... ...+                                  
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~----------------------------------  197 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRII----------------------------------  197 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEES----------------------------------
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEE----------------------------------
Confidence            3444456678999999776666665444 666666654210 0000                                  


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                                                          ........+.|+++|++. ..++-+..++|..+|+........ 
T Consensus       198 ------------------------------------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~-  240 (349)
T 3v64_C          198 ------------------------------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV-  240 (349)
T ss_dssp             ------------------------------------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-
T ss_pred             ------------------------------------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE-
Confidence                                                000012367899998655 455666778899999875432111 


Q ss_pred             eeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEE
Q 013545          343 FETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      .   ......|..+++. ++ .++++.  ...+..++..+|+...++.........+++
T Consensus       241 ~---~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  294 (349)
T 3v64_C          241 I---SQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT  294 (349)
T ss_dssp             E---CSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             E---eCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence            1   1112345555552 33 444432  356777776677766655433333344443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.96  E-value=0.47  Score=49.28  Aligned_cols=292  Identities=9%  Similarity=-0.009  Sum_probs=158.8

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceecc-ceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKH-RSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      ..|++|..+. ++ .|.-|...+.|.++|..+.....    .... -..+........-....|.++...+ ++ .|-.|
T Consensus       258 ~~i~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~----~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g-~lWig  329 (781)
T 3v9f_A          258 SYIFSIKQLK-DN-KLWIATELNGIMILDLQQNQFLL----PEQIRFEFIREGDNNYSLSNASARYIFQDS-FN-NIWIG  329 (781)
T ss_dssp             CCEEEEEECT-TS-EEEEEESSSCEEEEETTCC-------------CEEECBCSSTTSBSSSCEEEEEECS-SC-CEEEE
T ss_pred             ceEEEEEECC-CC-CEEEEeCCCCeEEECCCCCeeee----eeccccccccCCCCCCCCCCCeEEEEEEeC-CC-CEEEE
Confidence            5688888863 45 46566666778889976543210    0000 0000000000111334566665544 34 56667


Q ss_pred             eCCCcEEEEECCCCeEEEEEec-----------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee---cC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKM-----------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL---SG  188 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l---~~  188 (441)
                      ..++-|..++........ +..           ...+.++....  .+  .|-.|+.++-+.++|..++......   ..
T Consensus       330 t~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~--~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~  404 (781)
T 3v9f_A          330 TWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDG--QG--KLWIGTDGGGINVFENGKRVAIYNKENREL  404 (781)
T ss_dssp             EBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECT--TS--CEEEEEBSSCEEEEETTEEEEECC-----C
T ss_pred             ecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcC--CC--CEEEEeCCCcEEEEECCCCeEEEccCCCCC
Confidence            777788899887654322 211           12344444332  22  2445665666999998765433211   12


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      ....|.++...+++. + ..|+.++.+..+|.++++.. .+..                                     
T Consensus       405 ~~~~v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~~-~~~~-------------------------------------  444 (781)
T 3v9f_A          405 LSNSVLCSLKDSEGN-L-WFGTYLGNISYYNTRLKKFQ-IIEL-------------------------------------  444 (781)
T ss_dssp             CCSBEEEEEECTTSC-E-EEEETTEEEEEECSSSCEEE-ECCS-------------------------------------
T ss_pred             CCcceEEEEECCCCC-E-EEEeccCCEEEEcCCCCcEE-Eecc-------------------------------------
Confidence            346688888887775 4 34666677888887654211 0000                                     


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE-
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR-  347 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~-  347 (441)
                                            .         ......|.++...++|...+ |+. +-|..+|..+++...  +.... 
T Consensus       445 ----------------------~---------~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~--~~~~~~  489 (781)
T 3v9f_A          445 ----------------------E---------KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH--HYDTSN  489 (781)
T ss_dssp             ----------------------T---------TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE--EECTTT
T ss_pred             ----------------------C---------CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe--cccCcc
Confidence                                  0         00123578888888887655 444 458899988754321  11000 


Q ss_pred             --eccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecc----cccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          348 --LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG----HYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       348 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~g----h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                        .....+..+....++.+.+......+..++..+++. ..+..    ....|.++...++|...++.. +|.|..|++.
T Consensus       490 ~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~  567 (781)
T 3v9f_A          490 SQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR  567 (781)
T ss_dssp             SSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred             cccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence              001223445556667766555446777788765543 22221    134689999999988766544 6665889887


Q ss_pred             CCCC
Q 013545          422 RHIS  425 (441)
Q Consensus       422 ~~~~  425 (441)
                      +++.
T Consensus       568 ~~~~  571 (781)
T 3v9f_A          568 NFDY  571 (781)
T ss_dssp             TCCC
T ss_pred             CCcE
Confidence            7653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.90  E-value=0.25  Score=45.13  Aligned_cols=208  Identities=10%  Similarity=-0.015  Sum_probs=112.4

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCC----CeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNC----TRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                      +..+.+.+.++.++.+-...+.|..+++..    ......+... .....+++.+.  +..+..+-..++.|.+.+++..
T Consensus        32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~--~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSS
T ss_pred             eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec--CCeEEEEECCCCEEEEEeCCCC
Confidence            445677664555666767778999999875    1212112111 12334454432  2345555566788999998755


Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR  259 (441)
Q Consensus       181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (441)
                      .....+.........+++.|.+..++++.... +.|...++.. .....+-                             
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~-----------------------------  159 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV-----------------------------  159 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE-----------------------------
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE-----------------------------
Confidence            43333333445678999999776666664333 5666666531 1000000                             


Q ss_pred             CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCc
Q 013545          260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~  338 (441)
                                                               .......+.|+++|++..| ++-+..++|..+|+.....
T Consensus       160 -----------------------------------------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~  198 (316)
T 1ijq_A          160 -----------------------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (316)
T ss_dssp             -----------------------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             -----------------------------------------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce
Confidence                                                     0001236789999876554 5556677999999875332


Q ss_pred             eeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeeccc
Q 013545          339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGH  390 (441)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh  390 (441)
                      ..  +.........|..+++. . ..+++...  ..+..++..+|+....+...
T Consensus       199 ~~--~~~~~~~~~~P~giav~-~-~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~  248 (316)
T 1ijq_A          199 KT--ILEDEKRLAHPFSLAVF-E-DKVFWTDIINEAIFSANRLTGSDVNLLAEN  248 (316)
T ss_dssp             EE--EEECTTTTSSEEEEEEE-T-TEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EE--EeecCCccCCcEEEEEE-C-CEEEEEECCCCeEEEEeCCCCcceEEEecC
Confidence            11  11100012334555553 3 34444433  56777787777766655443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.88  E-value=0.53  Score=48.81  Aligned_cols=114  Identities=4%  Similarity=-0.111  Sum_probs=66.9

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCC----eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~  180 (441)
                      +..+.+.+.++.++++-...+.|+.+++...    .....+. .......+++.+.  +..+..+-...+.|.+.++...
T Consensus       426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~--~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSS
T ss_pred             eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec--CCcEEEEecCCCeEEEEeCCCC
Confidence            4466776655556667667788888888642    1122222 1122334555443  3346666667789999999765


Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcC
Q 013545          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (441)
Q Consensus       181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~  221 (441)
                      .....+.........|++.|.+.+++++-..+ +.|...++.
T Consensus       504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d  545 (791)
T 3m0c_C          504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  545 (791)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence            54334444555688999999866666664222 566666654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.85  E-value=0.49  Score=47.78  Aligned_cols=223  Identities=7%  Similarity=-0.008  Sum_probs=132.1

Q ss_pred             CCCcEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      ....|+.-|+.+..........+  ....+.+.+.  ...+..+-..++.|+.+++........+.........+++.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~--~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~   90 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVT--DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWL   90 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECC--CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeC
Confidence            45678888887655433333332  3455666653  3345666666788999998765443334333345678888877


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      +..++++-...+.|.+.++..... .++-                                                   
T Consensus        91 ~~~LY~tD~~~~~I~v~~~dG~~~-~~l~---------------------------------------------------  118 (628)
T 4a0p_A           91 GKNLYWADTGTNRIEVSKLDGQHR-QVLV---------------------------------------------------  118 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSTTC-EEEE---------------------------------------------------
T ss_pred             CCEEEEEECCCCEEEEEecCCCcE-EEEE---------------------------------------------------
Confidence            666777766667777777642110 0000                                                   


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEe-ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSA-GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                         ........+|++.|. |..+.|- +...+|...++.......     +......|.-+++.
T Consensus       119 -------------------~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-----l~~~~~~P~GlalD  174 (628)
T 4a0p_A          119 -------------------WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-----LVPNVGRANGLTID  174 (628)
T ss_dssp             -------------------CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-----EECSCSSEEEEEEE
T ss_pred             -------------------eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-----EECCCCCcceEEEc
Confidence                               000123578999985 5555554 235678888877543221     11123457778888


Q ss_pred             CCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          360 QDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       360 ~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ++...++++-.  ..+..+++..... ..+.........+++.. +..++|-...+.|...+..++...
T Consensus       175 ~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          175 YAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             cccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence            88777777643  4677788754433 44444445567888865 455556555778888887666533

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.84  E-value=0.024  Score=58.85  Aligned_cols=113  Identities=8%  Similarity=0.041  Sum_probs=65.1

Q ss_pred             EEEEEccCCCEEEEeecC-----CcEEEeeCCCCCce-eeeeeeEEeccCcceEEEeeCCCcEEEEeC----CCceEEEE
Q 013545          308 TGLKVTEDGMYLLSAGSD-----SRIRLWDVESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTAVKAFD  377 (441)
Q Consensus       308 ~~l~~s~dg~~l~sgs~D-----~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~wd  377 (441)
                      .+++|+|||+.|+-...|     ..|.++++.++... ...+..  ..........+++|+..++...    ...+.++|
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d  301 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE--HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD  301 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC--CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec--CCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence            356899999988877665     25888888775421 111111  0112234567899998776643    23577788


Q ss_pred             ccCCc--e--EeeecccccceEEEEEcCCCCeEEEeecC--C--cEEEeCCCC
Q 013545          378 IWSGK--T--CLTFRGHYEYVNCCCFSSQDQELYTGGND--R--QILVWCPSR  422 (441)
Q Consensus       378 ~~~~~--~--~~~l~gh~~~v~~v~fspd~~~l~s~s~D--~--~i~vW~~~~  422 (441)
                      +.++.  .  .....+..+....+.|+.++.+++....|  +  .|.++++.+
T Consensus       302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          302 LRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            87652  3  23334445566666666555555555444  3  355555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.80  E-value=0.0039  Score=64.12  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=52.9

Q ss_pred             eEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCce
Q 013545          307 VTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKT  383 (441)
Q Consensus       307 v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~  383 (441)
                      .+.|+|+|++ .++++-+..++|..+++.......  +.........+..+++..+  .+++...  ..|..++..+|+.
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~--~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--ILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE--ECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE--EEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence            4578999874 555666777889999987533211  1110011123344444433  4555433  5788888888888


Q ss_pred             EeeecccccceEEEEEcCC
Q 013545          384 CLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       384 ~~~l~gh~~~v~~v~fspd  402 (441)
                      +.++.......+.|++.++
T Consensus       618 ~~~i~~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          618 VNLLAENLLSPEDMVLFHQ  636 (699)
T ss_dssp             EECCCTTCSSCCCCCBCSS
T ss_pred             eEEeecCCCCCcEEEEeCc
Confidence            7777554444556655543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.77  E-value=0.008  Score=61.82  Aligned_cols=223  Identities=7%  Similarity=-0.035  Sum_probs=114.0

Q ss_pred             CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC----CceeeeecCCCCCeEEEEEe
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS----GAISQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~----~~~~~~l~~h~~~v~~v~fs  199 (441)
                      ..+.|+..++.................+++.+.  ...+..+-...+.|+.+++.+    ......+.........|++.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~--~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETT--TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccc--cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            345788888776654433322223334455442  233444445567899999875    22222222222334567777


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      +.+..++++-...+.|.+.|+.......++.                                                 
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-------------------------------------------------  492 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------------------------------------------  492 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECC-------------------------------------------------
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEe-------------------------------------------------
Confidence            6555566665566778888765321100000                                                 


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                            ........|+++|.+ .++++-... ++|...++.......  +.  ......|.-++
T Consensus       493 ----------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~--~~~l~~PnGla  546 (699)
T 1n7d_A          493 ----------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TENIQWPNGIT  546 (699)
T ss_dssp             ----------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ES--CSSCSSCCCEE
T ss_pred             ----------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EE--eCCCCCccEEE
Confidence                                  000113456777754 344444333 678887775432111  00  01123466688


Q ss_pred             eeCCCcEEEEeCC--CceEEEEccCCceEeeec--ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545          358 TTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFR--GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       358 ~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~--gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                      +.+++..++++-.  ..|..+++........+.  +.......|++..+ ..+++....+.|...+..++.
T Consensus       547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred             EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence            8887666666533  467777775332222222  12233455666544 455566666788888876554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.75  E-value=0.4  Score=45.44  Aligned_cols=218  Identities=9%  Similarity=-0.020  Sum_probs=119.9

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC----eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~  179 (441)
                      .+..+.+.+.++.++.+-...+.|..+++...    .....+. .......+++.+.  ...+..+-...+.|.+.+++.
T Consensus       113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~--~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT--TTEEEEEETTTTEEEEECTTT
T ss_pred             cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec--CCceEEEECCCCeEEEEeCCC
Confidence            35567777655656666666788988888642    1222221 1122344555442  334555666678899999976


Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEeec-CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~-Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      ......+.........|++.|.+..++++-.. .+.|...++........+                             
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-----------------------------  241 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----------------------------  241 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-----------------------------
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-----------------------------
Confidence            65444444445567899999976666665322 356666665421000000                             


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCC
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~  337 (441)
                                                                .......+.|++++++..| ++-+...+|...|+....
T Consensus       242 ------------------------------------------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          242 ------------------------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             ------------------------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             ------------------------------------------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence                                                      0001236789999876554 555667889999987543


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeecccccceEEEEE
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      ...  +.........+..+++.  ...+++.  ....|..++..+|+...++.........+++
T Consensus       280 ~~~--~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          280 RKT--ILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             CEE--EEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred             cEE--EEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            221  11100112344555553  3344443  2356788887788776666544444455544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.72  E-value=0.19  Score=52.11  Aligned_cols=148  Identities=10%  Similarity=0.048  Sum_probs=81.2

Q ss_pred             CCCC-ceeEEEcc-CCCCcEEE-EeeCC----CcEEEEECCCC-cccCCCCceeccceeEEeecccccCcccceeEEEEe
Q 013545           41 PHKG-SINSLQVD-LTEERYLL-SGASD----SSVAVYDVQRA-TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY  112 (441)
Q Consensus        41 ~H~~-~V~~l~~s-~~~~~~l~-s~s~D----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  112 (441)
                      +|.- .+...+|| |+ +++|| +.+.+    .+|+++|+.++ +....  .+                 ......+.|+
T Consensus       170 ~~~~~~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~-----------------~~~~~~~~Ws  229 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KV-----------------SGTNGEIVWG  229 (751)
T ss_dssp             TCSCCEEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CE-----------------EEECSCCEEC
T ss_pred             CCCeEEEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cc-----------------cCceeeEEEe
Confidence            3443 67889999 75 66665 33333    35999999876 42110  00                 0012245677


Q ss_pred             eCCCCEEEEEeCC-----CcEEEEECCCCeE--EEEEec--CCeeEEEeeccCCCCccEEEEEe--CCCcEEEEECCCCc
Q 013545          113 PVDTGLFVTGSYD-----HYVKVWDTNCTRV--VMNFKM--PGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGA  181 (441)
Q Consensus       113 ~~~~~~l~sgs~D-----~~i~iWd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~las~s--~d~~I~vwdl~~~~  181 (441)
                      | |++.|+....|     ..|.++++.++..  ...+..  ........+++++.  .++.+..  ....|.++|+.++.
T Consensus       230 p-Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~l~~~d~~~~~  306 (751)
T 2xe4_A          230 P-DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTN--TLCIGSQSPETAEVHLLDLRKGN  306 (751)
T ss_dssp             S-STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSS--EEEEEEECSSCEEEEEEESSSCT
T ss_pred             c-CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCC--EEEEEecCCCCceEEEEECCCCC
Confidence            6 67777666655     3578888877541  222222  22344566777643  3333332  34578899998762


Q ss_pred             --e--eeeecCCCCCeEEEEEecCCCcEEEEeecC
Q 013545          182 --I--SQTLSGHRDGIMTVEWSTSSEWILVTGGCD  212 (441)
Q Consensus       182 --~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D  212 (441)
                        .  .....+..+...++.|+. ++.+++....+
T Consensus       307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~  340 (751)
T 2xe4_A          307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEG  340 (751)
T ss_dssp             TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTT
T ss_pred             CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCC
Confidence              3  223334445556666654 45555555444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.60  E-value=0.44  Score=43.93  Aligned_cols=113  Identities=10%  Similarity=0.237  Sum_probs=65.8

Q ss_pred             eEEEEE--ccC-CC-EEEEeecCCcEEEeeCCC---CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEcc
Q 013545          307 VTGLKV--TED-GM-YLLSAGSDSRIRLWDVES---GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW  379 (441)
Q Consensus       307 v~~l~~--s~d-g~-~l~sgs~D~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  379 (441)
                      +..+|+  +|. +. ++.....++++..|++..   ++........+.+ .+.+--++..+....++++-.. +.+|.+.
T Consensus       130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd-~GIw~~d  207 (355)
T 3amr_A          130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEED-EAIWKFS  207 (355)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-TEEEEEE
T ss_pred             eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEeccc-ceEEEEe
Confidence            455677  674 43 677788889999998843   3222222222222 2344456666666777776543 3355543


Q ss_pred             -------CCceEeeec-ccc-cceEEEEE--cCCCC-eEEEee-cCCcEEEeCCC
Q 013545          380 -------SGKTCLTFR-GHY-EYVNCCCF--SSQDQ-ELYTGG-NDRQILVWCPS  421 (441)
Q Consensus       380 -------~~~~~~~l~-gh~-~~v~~v~f--spd~~-~l~s~s-~D~~i~vW~~~  421 (441)
                             +++.+..+. +|- ..+..|++  .++++ +|+..+ .+.+..||+..
T Consensus       208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence                   233444432 333 36888888  56666 555444 57789999986

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.06  E-value=0.36  Score=46.28  Aligned_cols=112  Identities=13%  Similarity=0.066  Sum_probs=63.0

Q ss_pred             CeEEEEEccCCCEE-EEeecCC----cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC-CCcEEEEe-CCCceEEEEc
Q 013545          306 AVTGLKVTEDGMYL-LSAGSDS----RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVP-CMTAVKAFDI  378 (441)
Q Consensus       306 ~v~~l~~s~dg~~l-~sgs~D~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~wd~  378 (441)
                      ....|+|+++|++| ++...++    .+.+.+.. +.....  ..+. ....+..+++.+ ++.+.++. ....+..++.
T Consensus       180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~--~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVI--TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSE--EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeee--eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            36789999999944 4443322    23334432 221100  0111 234566677888 55554443 3357888887


Q ss_pred             cCCceEeeec-ccccceEEEEEcCCCCeEE-EeecCCcEEEeCCC
Q 013545          379 WSGKTCLTFR-GHYEYVNCCCFSSQDQELY-TGGNDRQILVWCPS  421 (441)
Q Consensus       379 ~~~~~~~~l~-gh~~~v~~v~fspd~~~l~-s~s~D~~i~vW~~~  421 (441)
                      ..+.....+. +....-..++|+|+|++|+ +-.....|..++.+
T Consensus       256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            7655422111 1123468899999999544 55556788887765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.79  E-value=1.4  Score=41.87  Aligned_cols=235  Identities=14%  Similarity=0.206  Sum_probs=128.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCC----
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH----  189 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h----  189 (441)
                      ..+.+|--+ ..++.|+|+++...+..+.++..+.-=.|..    ...|+-.+ +..|.-|+++. ..+.+.+.-|    
T Consensus        76 ~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis----~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A           76 ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS----LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE----TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC----CCeEEEEc-CCeeEEecccCCCCchhheecchhcc
Confidence            445555444 6799999999999999988876643222222    12343333 45799999974 3455555544    


Q ss_pred             CCCeEEEEEecCCCcEEEEee------cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          190 RDGIMTVEWSTSSEWILVTGG------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s------~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      ...|..-..+++.+|+++.|=      -.|.+.+|..+... -+.++.+...+..                         
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~-------------------------  203 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ-------------------------  203 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEE-------------------------
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEE-------------------------
Confidence            345777778889999776654      34677888776431 1122211110000                         


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC---Ccee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG---RNTL  340 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~---~~~~  340 (441)
                                     +        .+ ++        ..+...+.  +|.....      ..+.+++-++...   ...+
T Consensus       204 ---------------~--------~~-~g--------~~~~~~lf--~fa~r~~------~g~kLhi~Ei~~~~~~~~~f  243 (494)
T 1bpo_A          204 ---------------F--------KM-EG--------NAEESTLF--CFAVRGQ------AGGKLHIIEVGTPPTGNQPF  243 (494)
T ss_dssp             ---------------E--------EC-TT--------CSSEEEEE--EEEECST------TCCEEEEEECSCCCTTCCCC
T ss_pred             ---------------E--------ec-CC--------CCCCceEE--EEEEecC------CCcEEEEEEcCCCccCCCCc
Confidence                           0        00 00        00111122  2322221      1367888888543   1111


Q ss_pred             eeeeeEE------eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          341 VNFETVR------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       341 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      . .....      ...+-|+.+..++.-..++..+. +-+.++|+.++.++..-+=-...|..-+-.....-++.....|
T Consensus       244 ~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G  322 (494)
T 1bpo_A          244 P-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG  322 (494)
T ss_dssp             C-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred             c-ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence            0 01111      12345777888888888877655 6799999999988765443344455544444444444444555


Q ss_pred             cEEEeCCCC
Q 013545          414 QILVWCPSR  422 (441)
Q Consensus       414 ~i~vW~~~~  422 (441)
                      .|.-=.++.
T Consensus       323 qVl~v~v~e  331 (494)
T 1bpo_A          323 QVLSVCVEE  331 (494)
T ss_dssp             EEEEEEECT
T ss_pred             eEEEEEEcc
Confidence            554434333

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.65  E-value=2.1  Score=43.09  Aligned_cols=201  Identities=11%  Similarity=0.039  Sum_probs=112.9

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~  184 (441)
                      +..+.+.+.++.++.+-..++.|..+++........+... .....+++.+.  +..+..+-...+.|.+.+++......
T Consensus        39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~--~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWL--GKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeC--CCEEEEEECCCCEEEEEecCCCcEEE
Confidence            4467777766666677777889999988654433323221 22334454432  34455666667889999997654322


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEe-ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~-s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      .+.........|++.|....++++- +..+.|...++..... ..+                                  
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l----------------------------------  161 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL----------------------------------  161 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE----------------------------------
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE----------------------------------
Confidence            3334455678999998665566653 2234555555431100 000                                  


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                                                           .......+.|++++++.. .++-...++|...|+.......  
T Consensus       162 -------------------------------------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v--  202 (628)
T 4a0p_A          162 -------------------------------------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV--  202 (628)
T ss_dssp             -------------------------------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--
T ss_pred             -------------------------------------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEE--
Confidence                                                 001124678999997554 4555667889999987644321  


Q ss_pred             eeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeee
Q 013545          343 FETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTF  387 (441)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l  387 (441)
                      +   ......|..+++..  ..+++..  ...+...|..+|+....+
T Consensus       203 ~---~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          203 I---ADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             E---EECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             e---eccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            1   11223455555544  3444443  356777777666544433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.63  E-value=1.6  Score=41.66  Aligned_cols=114  Identities=12%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             eEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEcc--CC
Q 013545          307 VTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SG  381 (441)
Q Consensus       307 v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~--~~  381 (441)
                      ...++++| +|..+++-..+++|+.+|..++......+.  ......+..+++++++..++++..  ..+..++..  ++
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~--~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~  307 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM--MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG  307 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE--CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec--cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc
Confidence            45678999 788777777888999999986653111110  001122335888999986665543  467776654  23


Q ss_pred             ce--Eeeeccc---------------ccceEEEEE---------cCCCCeEEEeecCCcEEEeCCCC
Q 013545          382 KT--CLTFRGH---------------YEYVNCCCF---------SSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       382 ~~--~~~l~gh---------------~~~v~~v~f---------spd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      ..  ..++.+.               -..-..++|         .++|..+++-.....|+.+++..
T Consensus       308 ~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G  374 (433)
T 4hw6_A          308 KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG  374 (433)
T ss_dssp             CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS
T ss_pred             ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC
Confidence            21  1222221               123577999         67777777766677899998743

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.52  E-value=1.1  Score=40.92  Aligned_cols=110  Identities=9%  Similarity=0.076  Sum_probs=64.3

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------eeEEEeec-cCCCCccEEEEEe----------
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------KVYRTAMS-PLAASHMLIAAGT----------  167 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~las~s----------  167 (441)
                      +..|.+.++.++++.-..++|-.||...+..... ..++         ....+.+- .+.. ..++++..          
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccccc
Confidence            3566654444444444799999999986654433 3322         12333341 0222 44555433          


Q ss_pred             ---CCCcEEEEECC---CCceeeeec--CCC-----------CCeEEEEEecCCCcEEEEeecC-CcEEEEEc
Q 013545          168 ---EDVQVRLCDIA---SGAISQTLS--GHR-----------DGIMTVEWSTSSEWILVTGGCD-GAIRFWDI  220 (441)
Q Consensus       168 ---~d~~I~vwdl~---~~~~~~~l~--~h~-----------~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~  220 (441)
                         .+..+..+|+.   +++.+....  +..           .....++..++|. ..++++.- +.|-..|.
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSA  166 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECT
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeC
Confidence               25779999999   887654332  211           2367899999987 56777776 66555543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.24  E-value=1.4  Score=38.62  Aligned_cols=168  Identities=13%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      +.+.|-...+..++|+|++..+++....++.|...|+. ++..+.+.-                                
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l--------------------------------   66 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL--------------------------------   66 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--------------------------------
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--------------------------------
Confidence            34566667899999999877677667777788877875 433322100                                


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~  343 (441)
                                                           .+ ....-.|++.+++.++++.-.++++.++++..... ....
T Consensus        67 -------------------------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i~~~  107 (255)
T 3qqz_A           67 -------------------------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-VKIL  107 (255)
T ss_dssp             -------------------------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-EEEE
T ss_pred             -------------------------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-eeee
Confidence                                                 00 02245678889998878766778899998765432 1111


Q ss_pred             eeEEecc------CcceEEEeeCCCcEEEEeCC-CceEEEEcc---CCceEeee-------cccccceEEEEEcCCCCeE
Q 013545          344 ETVRLQT------SKPIQLATTQDPAVVFVPCM-TAVKAFDIW---SGKTCLTF-------RGHYEYVNCCCFSSQDQEL  406 (441)
Q Consensus       344 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~---~~~~~~~l-------~gh~~~v~~v~fspd~~~l  406 (441)
                      ....+..      ...--+++.+.+..++++.. ....+|.+.   ....+..+       ..+...+..+++.|....|
T Consensus       108 ~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~l  187 (255)
T 3qqz_A          108 KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTL  187 (255)
T ss_dssp             EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEE
T ss_pred             eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeE
Confidence            1111110      11235788888766666544 344555543   11112211       1123457899999986665


Q ss_pred             EE-eecCCcEEEeCCCCC
Q 013545          407 YT-GGNDRQILVWCPSRH  423 (441)
Q Consensus       407 ~s-~s~D~~i~vW~~~~~  423 (441)
                      +. ....+.+.+.|....
T Consensus       188 liLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          188 LVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             EEEETTTTEEEEECTTCC
T ss_pred             EEEECCCCeEEEEcCCCC
Confidence            54 445567888887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.77  E-value=3.9  Score=41.11  Aligned_cols=227  Identities=6%  Similarity=-0.016  Sum_probs=116.9

Q ss_pred             CCcEEEEECCCCe--EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCCCeEEEEEecC
Q 013545          125 DHYVKVWDTNCTR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       125 D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~v~~v~fsp~  201 (441)
                      .+.|+..|+....  .......-+....+.+.+.  ...+..+-...+.|..++++.... ...+.........+++.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~--~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS--HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETT--TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeC--CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            4567777776442  2212222233455556553  234555555567888888876532 2233333356789999987


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  281 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (441)
                      +..++++-...+.|.+.|+.... ..++-.                                                  
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~--------------------------------------------------  123 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSL-RKVLFW--------------------------------------------------  123 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCS-CEEEEC--------------------------------------------------
T ss_pred             CCEEEEEeCCCCEEEEEECCCCC-EEEEEe--------------------------------------------------
Confidence            66677776677888888875321 111100                                                  


Q ss_pred             CCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEe-ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSA-GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                                          .......+|++.|.+ ..+.|- +....|...++........ .   ......|.-+++.
T Consensus       124 --------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l-~---~~~~~~P~Glald  179 (619)
T 3s94_A          124 --------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-I---NSEIYWPNGLTLD  179 (619)
T ss_dssp             --------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E---CSSCSSEEEEEEE
T ss_pred             --------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE-E---eCCCCCCcEEEEE
Confidence                                001124567888864 444544 2245677667664322111 0   1123456778888


Q ss_pred             CCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545          360 QDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       360 ~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      ++...++++-.  ..+..+++........+.+.......|++..+ ..++|-...+.|..-+..++.....+
T Consensus       180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          180 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             TTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             ccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            87777776643  45666666433222222222233456777665 44555555677888888777644333

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=94.54  E-value=2.2  Score=37.37  Aligned_cols=73  Identities=14%  Similarity=0.188  Sum_probs=50.1

Q ss_pred             eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545          147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (441)
Q Consensus       147 ~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~  223 (441)
                      .+..+++.+.  ++.+.++...++.|...|+. ++.++.+. +-......|++.+++. ++++.-.++.+.++++...
T Consensus        28 ~lSGla~~~~--~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           28 NISSLTWSAQ--SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             CEEEEEEETT--TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECTT
T ss_pred             CcceeEEeCC--CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCCC
Confidence            3555666664  34567777778899999998 87777653 2225678899988875 4455445678888887643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.41  E-value=1.4  Score=42.75  Aligned_cols=156  Identities=10%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             eeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE-------eeCCCC
Q 013545           46 INSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-------YPVDTG  117 (441)
Q Consensus        46 V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-------~~~~~~  117 (441)
                      -..|+|+|. +++++++-...+.|++.|.+++...             .+... ..+.......+++       .+ +++
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-------------~l~~~-~~~~~~~p~~ia~~~~~~~~d~-~G~  205 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-------------SPLNI-NTIPTNRIRSIAFNKKIEGYAD-EAE  205 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-------------EEECC-TTSSCSBEEEEEECCCBTTTBC-TTC
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-------------EEEcc-CccccCCCcEEEEeecccccCC-CCC
Confidence            468899873 4555555555567888888754321             00000 0111223555666       55 677


Q ss_pred             EEEEEeCCC-------cEEEEECCC-Ce--------EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC---
Q 013545          118 LFVTGSYDH-------YVKVWDTNC-TR--------VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA---  178 (441)
Q Consensus       118 ~l~sgs~D~-------~i~iWd~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~---  178 (441)
                      .|+.+.+.+       .|-+.+... +.        .+..+.   ....+++++.  ...++++-..++.|..+|++   
T Consensus       206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~--~g~LYvtd~~~g~V~r~d~~~~~  280 (496)
T 3kya_A          206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPI--NGELYFNSYEKGQVFRLDLVDYF  280 (496)
T ss_dssp             EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTT--TCCEEEEETTTTEEEEECHHHHH
T ss_pred             EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC---CceEEEEcCC--CCeEEEEECCCCEEEEEeccccc
Confidence            565555543       255555332 12        122221   2233445543  34566666778889999997   


Q ss_pred             ----CCce-----------eee-ec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          179 ----SGAI-----------SQT-LS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       179 ----~~~~-----------~~~-l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                          ++..           ... +. +.......++|+|+++.++++=+....|+.+|..
T Consensus       281 ~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          281 KTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                5553           111 11 2234457999999998666666667888886653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.30  E-value=1.2  Score=48.60  Aligned_cols=102  Identities=15%  Similarity=0.224  Sum_probs=64.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCC----
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH----  189 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h----  189 (441)
                      ..+++|--+ .+++.|+|+.+...+..+.++..+.-=.|.  ..  ..|+-.+ +..|.-|++.. ..+.+.+.-|    
T Consensus        76 ~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~--~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~  149 (1630)
T 1xi4_A           76 ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA  149 (1630)
T ss_pred             CcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEec--CC--CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcc
Confidence            344554433 679999999998888888876664322222  11  2333332 45799999974 3455555444    


Q ss_pred             CCCeEEEEEecCCCcEEEEee------cCCcEEEEEcCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGG------CDGAIRFWDIRR  222 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s------~Dg~I~iWD~~~  222 (441)
                      ...|..-..+++.+|+++.|=      -.|.+.+|.+..
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence            456777778888898776653      346777777653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.10  E-value=1.6  Score=40.12  Aligned_cols=111  Identities=10%  Similarity=0.126  Sum_probs=73.0

Q ss_pred             CCC-EEEEEeCCCcEEEEECC-------CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-----CCc
Q 013545          115 DTG-LFVTGSYDHYVKVWDTN-------CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-----SGA  181 (441)
Q Consensus       115 ~~~-~l~sgs~D~~i~iWd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-----~~~  181 (441)
                      .+. +++....++.+..|++.       +.+.+.++.+.+.+-.+...+.   ...|..+-.+.-|..++.+     +++
T Consensus       141 ~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~---~g~Lyv~eEd~GIw~~da~p~~~~~~~  217 (355)
T 3amr_A          141 TGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDE---YGRLYIAEEDEAIWKFSAEPDGGSNGT  217 (355)
T ss_dssp             TCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETT---TTEEEEEETTTEEEEEECSTTSCSCCE
T ss_pred             CCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCC---CCeEEEecccceEEEEeCCcCCCCCce
Confidence            344 57777788999999882       3456788888877666665543   2356777777777777754     234


Q ss_pred             eeeeec-CCC-CCeEEEEE--ecCCC-cEEEEeecCCcEEEEEcC-CCceeeE
Q 013545          182 ISQTLS-GHR-DGIMTVEW--STSSE-WILVTGGCDGAIRFWDIR-RAGCFRV  228 (441)
Q Consensus       182 ~~~~l~-~h~-~~v~~v~f--sp~~~-~~l~s~s~Dg~I~iWD~~-~~~~~~~  228 (441)
                      .+..+. +|. ..+..+++  .++++ ++|+|+-.+++..+||.. +.+.+..
T Consensus       218 ~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          218 VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             EEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            444432 332 46888887  45555 677777678899999986 4443333

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.00  E-value=3.2  Score=36.99  Aligned_cols=104  Identities=17%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             CCCEEEEeecC-----CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCCc-
Q 013545          315 DGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSGK-  382 (441)
Q Consensus       315 dg~~l~sgs~D-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~~-  382 (441)
                      +++.++.|+.+     ..+.+||+.+.+-..  ...  +........+...++.+++.++.      ..+.+||+.+.+ 
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~--~~~--~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN--VTP--MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEE--ECC--CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEe--CCC--CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            56666666654     458889988754221  111  11111111222234555555432      357888886643 


Q ss_pred             -eEeeecccccceEEEEEcCCCCeEEEeecC-----CcEEEeCCCCCC
Q 013545          383 -TCLTFRGHYEYVNCCCFSSQDQELYTGGND-----RQILVWCPSRHI  424 (441)
Q Consensus       383 -~~~~l~gh~~~v~~v~fspd~~~l~s~s~D-----~~i~vW~~~~~~  424 (441)
                       .+..+.........+.  -+++.++.||.+     ..|.++|+.+..
T Consensus       235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          235 TTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             EECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             2222221111112222  367787888766     357788887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.75  E-value=4.7  Score=38.13  Aligned_cols=103  Identities=15%  Similarity=0.152  Sum_probs=64.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-------
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-------  182 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-------  182 (441)
                      ++..++.+ .++.||.-++.....-+.++.+     +.+..+.+++.+   .+||..+ +..|.|..+..+..       
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG---~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG---DLLCLFN-DNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS---SEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC---CEEEEec-CCeEEEEEecCccccCccccc
Confidence            44444444 4578888887643322233333     145567777754   4666654 57899999974320       


Q ss_pred             -----eeeec-C-----CCCCeEEEEEecCCCc--EEEEeecCCcEEEEEcCC
Q 013545          183 -----SQTLS-G-----HRDGIMTVEWSTSSEW--ILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       183 -----~~~l~-~-----h~~~v~~v~fsp~~~~--~l~s~s~Dg~I~iWD~~~  222 (441)
                           .+.+. +     ...+|..+.|+|-+..  .|+.=..|+.||+||+..
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                 11222 1     3577999999997542  456777899999999974

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=93.41  E-value=4.5  Score=36.85  Aligned_cols=161  Identities=15%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccc-cCcccceeEEEEe--eCCCCEEEE
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHE-HGHKYAISSAIWY--PVDTGLFVT  121 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~--~~~~~~l~s  121 (441)
                      .=-+++|++.++.++++.-..++|..||...+...+          + ....... ......+..+.+.  .+++.+++.
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~----------~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv   82 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN----------V-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV   82 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE----------E-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE----------E-ecCCccccCCCcceeeEEEEeccCCCCcEEEE
Confidence            344788886667777777789999999986442110          0 0000000 0011123455662  224545553


Q ss_pred             Ee-------------CCCcEEEEECC---CCeEEEEEecC----C----------eeEEEeeccCCCCccEEEEEeCC-C
Q 013545          122 GS-------------YDHYVKVWDTN---CTRVVMNFKMP----G----------KVYRTAMSPLAASHMLIAAGTED-V  170 (441)
Q Consensus       122 gs-------------~D~~i~iWd~~---~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~las~s~d-~  170 (441)
                      ..             .+..|..+|+.   +++.+....+.    +          ....++..+.  ++. -++++.. +
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~--Gna-YVt~s~~~~  159 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD--GNS-YVAFALGMP  159 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT--SCE-EEEEEESSC
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC--CCE-EEeCCCCCC
Confidence            32             26789999998   78776665542    1          2444555443  333 3344445 6


Q ss_pred             cEEEEECCCCceeeee------cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          171 QVRLCDIASGAISQTL------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       171 ~I~vwdl~~~~~~~~l------~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      .|...+..... +..+      .........++++|++..+++..+ .|.+..+|++
T Consensus       160 ~I~rV~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          160 AIARVSADGKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS  214 (334)
T ss_dssp             EEEEECTTSCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred             eEEEEeCCCCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence            66666664332 2211      112233568999999986666655 9999999986

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.31  E-value=2.8  Score=39.66  Aligned_cols=108  Identities=9%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             EccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec----cCcceEEEeeCCCcEEEEeCCCceEEEEccCCc-----
Q 013545          312 VTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ----TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK-----  382 (441)
Q Consensus       312 ~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~-----  382 (441)
                      .+.+|..|+.+ .++.||.-++....    .++.+...    ...+.++..+++|.+++..+...+.+..+-.+.     
T Consensus        28 ~~~n~t~i~~a-~~n~iR~~~i~~~~----~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           28 SSQNGTRIVFI-QDNIIRWYNVLTDS----LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EETTTTEEEEE-ETTEEEEEETTTCS----SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCC
T ss_pred             EEcCCCEEEEE-ECCEEEEEECCCCC----cceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcc
Confidence            44566666655 45788888887432    13343433    235667899999999999999999998874221     


Q ss_pred             -------eEeeecc------cccceEEEEEcCC---CCeEEEeecCCcEEEeCCCCCC
Q 013545          383 -------TCLTFRG------HYEYVNCCCFSSQ---DQELYTGGNDRQILVWCPSRHI  424 (441)
Q Consensus       383 -------~~~~l~g------h~~~v~~v~fspd---~~~l~s~s~D~~i~vW~~~~~~  424 (441)
                             .+..+.-      ...+|..+.|+|-   +..|++=-.|++||+|++....
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~  160 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ  160 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence                   0112221      2467999999996   4578888899999999998744

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.09  E-value=7.3  Score=35.95  Aligned_cols=114  Identities=11%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             eEEEEEcc--CCC--EEEEeec--CCcEEEeeCCCCCceeeeeeeEEe-ccCcceEEEeeCCCcEEEEeCC---------
Q 013545          307 VTGLKVTE--DGM--YLLSAGS--DSRIRLWDVESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCM---------  370 (441)
Q Consensus       307 v~~l~~s~--dg~--~l~sgs~--D~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------  370 (441)
                      ...+.+.+  ++.  .+++...  +.+|.+|++............... ....+..+.+.+++...+....         
T Consensus       114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~  193 (355)
T 3sre_A          114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS  193 (355)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred             eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence            34455544  343  3444333  678889887764332222222211 1234566777788876555321         


Q ss_pred             -------CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe-ecCCcEEEeCCC
Q 013545          371 -------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPS  421 (441)
Q Consensus       371 -------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~D~~i~vW~~~  421 (441)
                             ..-++|.+..++ +..+...-..-+.++||||+++|+.+ +..+.|..|++.
T Consensus       194 ~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          194 WEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             HHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             chhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence                   124566555443 33333333457999999999887755 456788888875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.04  E-value=1.5  Score=40.65  Aligned_cols=100  Identities=18%  Similarity=0.169  Sum_probs=58.2

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE---eccCcceEEEeeCC---CcEEEEeCC-------Cc
Q 013545          306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR---LQTSKPIQLATTQD---PAVVFVPCM-------TA  372 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~-------~~  372 (441)
                      ....|+|.|||+++++ ..+++|++++  .++..  .+....   .....+.-+++.++   +..+++...       ..
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~--~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLS--TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEE--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCcc--EeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            4678999999997665 4569999998  33311  111111   11345677888887   445544322       45


Q ss_pred             eEEEEccCCc-----e-Eeeec---ccccceEEEEEcCCCCeEEEee
Q 013545          373 VKAFDIWSGK-----T-CLTFR---GHYEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       373 ~~~wd~~~~~-----~-~~~l~---gh~~~v~~v~fspd~~~l~s~s  410 (441)
                      +..++...+.     . +..+.   +.......++|.|||.++++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            6666665431     1 11233   1111236899999998777754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.37  E-value=7.5  Score=34.59  Aligned_cols=98  Identities=9%  Similarity=0.042  Sum_probs=49.2

Q ss_pred             EEEEEeC--CCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCC----CcEEEEECCCCceee--eec
Q 013545          118 LFVTGSY--DHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTED----VQVRLCDIASGAISQ--TLS  187 (441)
Q Consensus       118 ~l~sgs~--D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d----~~I~vwdl~~~~~~~--~l~  187 (441)
                      +++.||.  ...+.+||..+.+-...-.++...  ......    ++.+++.|+.+    ..+.+||+.+.+-..  .+.
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            4445554  357888998877644322222111  111111    23456666544    568899998875322  222


Q ss_pred             CCCCCeEEEEEecCCCcEEEEeecC------CcEEEEEcCC
Q 013545          188 GHRDGIMTVEWSTSSEWILVTGGCD------GAIRFWDIRR  222 (441)
Q Consensus       188 ~h~~~v~~v~fsp~~~~~l~s~s~D------g~I~iWD~~~  222 (441)
                      .......++.+  +++ +++.|+.+      ..+.+||+.+
T Consensus        90 ~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           90 TPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             SCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTT
T ss_pred             ccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCC
Confidence            21222222322  343 66777755      3466677654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=90.91  E-value=9  Score=34.70  Aligned_cols=157  Identities=13%  Similarity=0.130  Sum_probs=82.6

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcE-EEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSV-AVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~  113 (441)
                      +..+..++...+..+.+.+ ++++++.+. +|.+ +-+|- .+.....          +      ...+...+..+.+.+
T Consensus       154 W~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~-gG~tW~~----------~------~~~~~~~~~~~~~~~  214 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP-GQTAWEP----------H------NRTTSRRLHNMGFTP  214 (327)
T ss_dssp             EEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECT-TCSSCEE----------E------ECCSSSCEEEEEECT
T ss_pred             CEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCC-CCCceeE----------C------CCCCCCccceeEECC
Confidence            4555566777899999986 466666654 4544 33442 1111100          0      002223455566654


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-
Q 013545          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-  187 (441)
Q Consensus       114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-  187 (441)
                       ++. +..++.++.+.+++...++.-.....+     ..+..+.+.+.   ..+++++ .++.| ++....|+.-..+. 
T Consensus       215 -~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~---~~~~~~g-~~g~i-~~S~DgG~tW~~~~~  287 (327)
T 2xbg_A          215 -DGR-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP---NEVWLAG-GAGAL-LCSQDGGQTWQQDVD  287 (327)
T ss_dssp             -TSC-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS---SCEEEEE-STTCE-EEESSTTSSCEECGG
T ss_pred             -CCC-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC---CEEEEEe-CCCeE-EEeCCCCcccEEcCc
Confidence             454 445567788777642223322222211     12455555542   3355554 46666 45555565433333 


Q ss_pred             --CCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545          188 --GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (441)
Q Consensus       188 --~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD  219 (441)
                        .+...+.++.|.+++.  ++.++.+|.|.-++
T Consensus       288 ~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          288 VKKVPSNFYKILFFSPDQ--GFILGQKGILLRYV  319 (327)
T ss_dssp             GTTSSSCCCEEEEEETTE--EEEECSTTEEEEEC
T ss_pred             cCCCCCCeEEEEEECCCc--eEEEcCCceEEEEc
Confidence              2346678899986553  45667789877665

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=90.65  E-value=15  Score=36.79  Aligned_cols=354  Identities=11%  Similarity=0.035  Sum_probs=159.9

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE-
Q 013545           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-  122 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg-  122 (441)
                      .....|++++.++++.++-...+.|.+.++.....           .++. . ...    .....+++.|.++.++.|- 
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-----------~~l~-~-~~l----~~P~~Iavdp~~g~ly~tD~  146 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-----------KVLF-W-QEL----DQPRAIALDPSSGFMYWTDW  146 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------EEEE-C-SSC----SCCCCEEEETTTTEEEEEEC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-----------EEEE-e-CCC----CCCceEEEecCCCeEEEecc
Confidence            46778999865666777777888999998864321           1111 0 111    1233456666445444443 


Q ss_pred             eCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545          123 SYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~  201 (441)
                      +....|..-++.......... .-.....+++.+..  ..+..+-...+.|...|+........+.+......++++..+
T Consensus       147 g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~--~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~  224 (619)
T 3s94_A          147 GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE--QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED  224 (619)
T ss_dssp             SSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTT--TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS
T ss_pred             CCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccC--CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC
Confidence            113445555553222211111 11123455555532  334444455678999998765443333322233356677654


Q ss_pred             CCcEEEEeecCCcEEEEEcCCCceeeEeccCC-cccc-------CCCCc-ccccccccCccCCcCCCCC---CcccCCCC
Q 013545          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ-SQLG-------RRPPL-LKRKSLSAGQNSSVKPRAP---QKRSANGN  269 (441)
Q Consensus       202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~-~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~  269 (441)
                        .++++-...+.|...|..+++....+.... .+.+       ..+.. ..+....+.. .+.....+   ...-.+..
T Consensus       225 --~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~C-s~lCl~~~~~~~~~C~C~~  301 (619)
T 3s94_A          225 --ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGC-SHLCLMSPVKPFYQCACPT  301 (619)
T ss_dssp             --EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGC-SSEEEECSSTTSEEEECCT
T ss_pred             --EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcc-cceEECCCCCCCceEeCCc
Confidence              567776667889999987765444332211 0000       00000 0000000000 00000000   00000111


Q ss_pred             CccccCcccc---------c-CC-CCccc-ccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCC
Q 013545          270 GVRQSSVGRI---------P-AK-GSVRQ-RLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       270 ~~~~~~~~~~---------~-~~-~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~  336 (441)
                      +....++++.         . +. ..+.. .+.................+.+|+|.+. +..+++-...++|+.+++...
T Consensus       302 g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~  381 (619)
T 3s94_A          302 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS  381 (619)
T ss_dssp             TCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             hheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Confidence            1111111110         0 00 00000 0000000000000011234678999984 555666667889999998764


Q ss_pred             CceeeeeeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEEcCCCCe-EEEe-ecC
Q 013545          337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTG-GND  412 (441)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~-s~D  412 (441)
                      .....    .......+.-+++.+.+..+++..  ...+.+.++........+...-.....+++.|...+ ++|- +..
T Consensus       382 ~~~~v----~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~  457 (619)
T 3s94_A          382 GSQFV----VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI  457 (619)
T ss_dssp             SCEEE----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS
T ss_pred             ccEEE----EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC
Confidence            32111    111123566678877656555543  356777777543322222333456799999997444 4453 223


Q ss_pred             CcEEEeCCCCC
Q 013545          413 RQILVWCPSRH  423 (441)
Q Consensus       413 ~~i~vW~~~~~  423 (441)
                      ..|...+++..
T Consensus       458 ~~I~r~~~dG~  468 (619)
T 3s94_A          458 PKIERAALDGS  468 (619)
T ss_dssp             CEEEEEETTSC
T ss_pred             CEEEEEccCCC
Confidence            45655555543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.05  E-value=12  Score=33.21  Aligned_cols=105  Identities=13%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CCCEEEEeecC-------CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCC
Q 013545          315 DGMYLLSAGSD-------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSG  381 (441)
Q Consensus       315 dg~~l~sgs~D-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~  381 (441)
                      +++.++.|+.+       ..+.+||+.+.+-..  ...  +........+...++.+.+.++.      ..+.+||+.+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY--IAE--MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEE--ECC--CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE--CCC--CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            45555555543       358889988754221  111  11111111222234555555432      35788888664


Q ss_pred             c--eEeeecccccceEEEEEcCCCCeEEEeecCC-----cEEEeCCCCCCC
Q 013545          382 K--TCLTFRGHYEYVNCCCFSSQDQELYTGGNDR-----QILVWCPSRHIS  425 (441)
Q Consensus       382 ~--~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~-----~i~vW~~~~~~~  425 (441)
                      +  .+..+......-..+.  .+++.++.||.++     .+.++|+.+..-
T Consensus       231 ~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          231 AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            3  2222211111111222  3677888887664     488888887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.60  E-value=13  Score=33.19  Aligned_cols=104  Identities=13%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             CCCEEEEeec-C-----CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCCc
Q 013545          315 DGMYLLSAGS-D-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSGK  382 (441)
Q Consensus       315 dg~~l~sgs~-D-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~~  382 (441)
                      +++.++.|+. +     ..+.+||+.+.+-..  ...  +........+...++.+.+.++.      ..+.+||+.+.+
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE--LAP--MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEE--CCC--CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEE--CCC--CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            4556666665 2     468888988754221  111  11111111222334555554432      246778876542


Q ss_pred             --eEeeecccccceEEEEEcCCCCeEEEeecCC--------------cEEEeCCCCCC
Q 013545          383 --TCLTFRGHYEYVNCCCFSSQDQELYTGGNDR--------------QILVWCPSRHI  424 (441)
Q Consensus       383 --~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~--------------~i~vW~~~~~~  424 (441)
                        .+..+......-..+.  -+++.++.||.++              .|.++|+.+..
T Consensus       224 W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          224 WAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence              2222211111112222  2667777777642              36778887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=88.37  E-value=15  Score=33.76  Aligned_cols=108  Identities=6%  Similarity=0.059  Sum_probs=67.7

Q ss_pred             CeEEEEEccCCCEEEEee-----------------cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe
Q 013545          306 AVTGLKVTEDGMYLLSAG-----------------SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP  368 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs-----------------~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (441)
                      ..+++++.++|.+.++..                 ..+.|..+|..  +..     ........+.-+++++|+..++++
T Consensus       166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~-----~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR-----VVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE-----EEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE-----EeecCCcccCcceECCCCCEEEEE
Confidence            467888888888777754                 12455555553  211     111122456678999999888776


Q ss_pred             CC--CceEEEEccC-Cce--EeeecccccceEEEEEcC-CCCeEEEeecCC-cEEEeCCC
Q 013545          369 CM--TAVKAFDIWS-GKT--CLTFRGHYEYVNCCCFSS-QDQELYTGGNDR-QILVWCPS  421 (441)
Q Consensus       369 ~~--~~~~~wd~~~-~~~--~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~-~i~vW~~~  421 (441)
                      ..  ..+..|++.. +..  ...+ ...+....+++.+ +|.+.+++..++ .|..|++.
T Consensus       239 dt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          239 ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             eCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            44  5678888753 332  1233 2245678899999 598888776553 56666665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.18  E-value=3.7  Score=37.91  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC---CcEEEEe-CC--------Cce
Q 013545          306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD---PAVVFVP-CM--------TAV  373 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~--------~~~  373 (441)
                      ....|+|.|||+++++ ..+++|+++|. .++.....+.........+.-+++.++   ...+++. ..        ..+
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4678999999986665 55699999973 333111111100011234667888887   4444443 21        345


Q ss_pred             EEEEccCC--c-----e-Eeeec---ccccceEEEEEcCCCCeEEEee
Q 013545          374 KAFDIWSG--K-----T-CLTFR---GHYEYVNCCCFSSQDQELYTGG  410 (441)
Q Consensus       374 ~~wd~~~~--~-----~-~~~l~---gh~~~v~~v~fspd~~~l~s~s  410 (441)
                      ..|+....  .     . +..+.   .|.  ...++|.|||.++++.+
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECC
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEEC
Confidence            55665443  1     1 11122   232  46799999998888754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.83  E-value=7  Score=37.48  Aligned_cols=104  Identities=15%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee-eeeeEEe---ccCcceEEEeeCC---CcEEEEeCC--------
Q 013545          306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETVRL---QTSKPIQLATTQD---PAVVFVPCM--------  370 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~--------  370 (441)
                      ..++|+|.|+|+++++-...++|++++...++.... .+.....   ......-+++.|+   ...+++...        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            467999999999888765556799888665542211 1110000   1233446788874   444444321        


Q ss_pred             ------CceEEEEccCC--c-----eEe-eec---ccccceEEEEEcCCCCeEEEeec
Q 013545          371 ------TAVKAFDIWSG--K-----TCL-TFR---GHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       371 ------~~~~~wd~~~~--~-----~~~-~l~---gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                            ..+..++...+  +     .+. .+.   .|  ....|+|.|||.++++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEECC
Confidence                  23444444322  1     111 122   23  3689999999998887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.77  E-value=7  Score=35.96  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee-eeeeE-EeccCcceEEEeeCC---CcEEEEe----CCCceEE
Q 013545          305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETV-RLQTSKPIQLATTQD---PAVVFVP----CMTAVKA  375 (441)
Q Consensus       305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~  375 (441)
                      ...+.|+|.|||..+++--..++|++++...++.... .+..+ ......+.-+++.|+   ...+++.    ....+-.
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3478999999999888776689999998765543211 00000 011344566788875   2333331    2234444


Q ss_pred             EEccCCc----------e-Eeeec---ccccceEEEEEcCCCCeEEEeec
Q 013545          376 FDIWSGK----------T-CLTFR---GHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       376 wd~~~~~----------~-~~~l~---gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                      |.+..+.          . +..+.   .|.  -..|+|.|||.++++.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBC
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECC
Confidence            5544311          1 11121   232  467999999998888653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.62  E-value=23  Score=33.85  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=20.8

Q ss_pred             CCCeEEEEEecCCCcEEEEeecC-CcEEEEEcC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~  221 (441)
                      ....++++|.|+++ ++++ ... +.|++++..
T Consensus        26 l~~P~~~a~~pdG~-l~V~-e~~gg~I~~~~~~   56 (454)
T 1cru_A           26 LNKPHALLWGPDNQ-IWLT-ERATGKILRVNPE   56 (454)
T ss_dssp             CSSEEEEEECTTSC-EEEE-ETTTCEEEEECTT
T ss_pred             CCCceEEEEcCCCc-EEEE-EcCCCEEEEEECC
Confidence            34568999999997 5665 444 467777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.92  E-value=18  Score=31.91  Aligned_cols=104  Identities=16%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC-----CcEEEEECCCCceee
Q 013545          115 DTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGAISQ  184 (441)
Q Consensus       115 ~~~~l~sgs~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-----~~I~vwdl~~~~~~~  184 (441)
                      ++.+++.||.+     ..+.++|+.+.+-...-.++...........  ++.+++.|+.+     ..+.+||+++.+-..
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            56677777765     4588899887765433222221111111111  23456666543     468999998875322


Q ss_pred             --eecCCCCCeEEEEEecCCCcEEEEeecC-----CcEEEEEcCCC
Q 013545          185 --TLSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRRA  223 (441)
Q Consensus       185 --~l~~h~~~v~~v~fsp~~~~~l~s~s~D-----g~I~iWD~~~~  223 (441)
                        .+........++.+  +++ +++.|+.+     ..|.+||+++.
T Consensus       237 ~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          237 VTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCC
Confidence              22211222223333  444 67777765     35778887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=85.87  E-value=21  Score=32.70  Aligned_cols=29  Identities=21%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~  220 (441)
                      ...+.++|.|++++++++ ...|.|++++.
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeC
Confidence            456899999998744554 56788888874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=85.83  E-value=20  Score=32.36  Aligned_cols=111  Identities=15%  Similarity=0.076  Sum_probs=58.6

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-CcceEEEeeCCCcEEEEeCCCceEEEEccCCceE
Q 013545          306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTC  384 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~  384 (441)
                      .+..+.+++++..++ .+.++.+++.+...++ ....+....+.. .....+++.+++.++++...+.+ .+....|+.-
T Consensus       206 ~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW  282 (327)
T 2xbg_A          206 RLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE-NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTW  282 (327)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEETTEEE-EECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSC
T ss_pred             ccceeEECCCCCEEE-EeCCceEEEecCCCCC-eeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCccc
Confidence            467788999887665 4567777776422111 000000000001 11234455566666555544434 3333334433


Q ss_pred             eeec---ccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          385 LTFR---GHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       385 ~~l~---gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ..+.   .+...+.+++|.++++ ++.++.+|+|..++.
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          283 QQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             EEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            3333   2345688999986554 666778998877765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=85.56  E-value=22  Score=32.57  Aligned_cols=99  Identities=13%  Similarity=0.138  Sum_probs=52.8

Q ss_pred             eEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEE--EEEec----CCeeEEEeeccCCCC-ccEEEEEeCC-----CcEEE
Q 013545          107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV--MNFKM----PGKVYRTAMSPLAAS-HMLIAAGTED-----VQVRL  174 (441)
Q Consensus       107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~--~~~~~----~~~~~~~~~~~~~~~-~~~las~s~d-----~~I~v  174 (441)
                      ..+++.+ ++.++++ ..++.|++++  ++...  ..+..    .+....++++++-.. ..+.++-..+     +.|..
T Consensus        34 ~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           34 WALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             eEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            3566665 6765554 5679999998  44432  22211    234567788875222 2233333322     56888


Q ss_pred             EECCCCce------eeeec---CCCCCeEEEEEecCCCcEEEEee
Q 013545          175 CDIASGAI------SQTLS---GHRDGIMTVEWSTSSEWILVTGG  210 (441)
Q Consensus       175 wdl~~~~~------~~~l~---~h~~~v~~v~fsp~~~~~l~s~s  210 (441)
                      +++..+..      +..+.   +.......++|.|++. ++++-+
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  153 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG  153 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence            88765421      11232   1112235889999985 556543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.26  E-value=22  Score=32.52  Aligned_cols=37  Identities=14%  Similarity=0.119  Sum_probs=26.1

Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~  222 (441)
                      .+.......+.++|.|++. ++++--..|.|++++...
T Consensus        26 ~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~   62 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKT   62 (347)
T ss_dssp             EEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTT
T ss_pred             EeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCC
Confidence            3444455679999999997 666654478898887543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=84.34  E-value=22  Score=31.57  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=50.8

Q ss_pred             CCCEEEEeecC-----CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCCce
Q 013545          315 DGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSGKT  383 (441)
Q Consensus       315 dg~~l~sgs~D-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~~~  383 (441)
                      ++..++.|+.+     ..+.+||+.+.+-..  ...  +........+...++.+.+.++.      ..+.+||+.+.+=
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRM--ITA--MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEE--CCC--CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEee--CCC--CCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            56666666654     458888887654221  111  11111111122224555555432      3578888866432


Q ss_pred             --EeeecccccceEEEEEcCCCCeEEEeecC-----CcEEEeCCCCCC
Q 013545          384 --CLTFRGHYEYVNCCCFSSQDQELYTGGND-----RQILVWCPSRHI  424 (441)
Q Consensus       384 --~~~l~gh~~~v~~v~fspd~~~l~s~s~D-----~~i~vW~~~~~~  424 (441)
                        +..+......-..+.  -+++.++-||.+     ..+.++|+.+..
T Consensus       244 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          244 TFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence              222211111112222  267788888765     347788887665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=84.32  E-value=13  Score=32.93  Aligned_cols=102  Identities=20%  Similarity=0.316  Sum_probs=53.2

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCC-----CcEEEEECCCC
Q 013545          115 DTGLFVTGSYD-------HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTED-----VQVRLCDIASG  180 (441)
Q Consensus       115 ~~~~l~sgs~D-------~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d-----~~I~vwdl~~~  180 (441)
                      ++.+++.||.+       ..+.+||+.+.+-...-.++...  ......    ++.+++.|+.+     ..+.+||+++.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL----NNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE----CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            45666776653       35888999877644332222211  111111    23456666543     46899999887


Q ss_pred             ceee--eecCCCCCeEEEEEecCCCcEEEEeecCC-----cEEEEEcCCC
Q 013545          181 AISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRRA  223 (441)
Q Consensus       181 ~~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-----~I~iWD~~~~  223 (441)
                      +-..  .+........++.+  +++ +++.|+.++     .|.+||+.+.
T Consensus       231 ~W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          231 AWRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CEeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCC
Confidence            5322  22211111122222  444 677777653     4788887754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.31  E-value=8  Score=33.05  Aligned_cols=112  Identities=9%  Similarity=-0.057  Sum_probs=60.1

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee-eeeeeEEecc---CcceEEEeeCCCcEEEEeCCCceEEEEccC-
Q 013545          306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL-VNFETVRLQT---SKPIQLATTQDPAVVFVPCMTAVKAFDIWS-  380 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-  380 (441)
                      .+..++|+|+|.+.+.  .++.+.-.+..+..... ....+ .+..   ..=..+.+.+++.+.++ ..+.+.-++.-+ 
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t-~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK-KIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE-EEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc-EecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            4679999999987776  67777776665422110 00000 1100   00134566677776666 344444343311 


Q ss_pred             Cce------EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          381 GKT------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       381 ~~~------~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      +..      .+.-.+-=+.+..|.|.|+|...+..  |+.+.-+.+++.
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~  164 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVS  164 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSS
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCC
Confidence            111      01111112468999999999776655  777655666533

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=82.05  E-value=27  Score=31.04  Aligned_cols=105  Identities=16%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             cCCCEEEEeec------CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCC
Q 013545          314 EDGMYLLSAGS------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSG  381 (441)
Q Consensus       314 ~dg~~l~sgs~------D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~  381 (441)
                      .+++.++.|+.      -..+.+||+.+.+-..  ...  +........+...++.+.+.++.      ..+.+||+.+.
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD--LAP--MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE--ECC--CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE--CCC--CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            35666666654      2358899988754221  111  11111111222234555554432      24667887654


Q ss_pred             c--eEeeecccccceEEEEEcCCCCeEEEeecC--------------CcEEEeCCCCCC
Q 013545          382 K--TCLTFRGHYEYVNCCCFSSQDQELYTGGND--------------RQILVWCPSRHI  424 (441)
Q Consensus       382 ~--~~~~l~gh~~~v~~v~fspd~~~l~s~s~D--------------~~i~vW~~~~~~  424 (441)
                      +  .+..+......-..+  ..+++.++.||.+              ..+.++|+.+..
T Consensus       233 ~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          233 KWEVMTEFPQERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             CEEECCCCSSCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             eEEECCCCCCcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            3  222222111111222  2356777777754              246677776544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=81.15  E-value=33  Score=31.39  Aligned_cols=28  Identities=14%  Similarity=0.052  Sum_probs=21.1

Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD  219 (441)
                      -...+.++|.|+++ ++++ ..+|.|+++|
T Consensus        28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d   55 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS   55 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEE-ETTTEEEEEC
T ss_pred             CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe
Confidence            34568999999986 5554 5568898886

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=80.39  E-value=7.9  Score=35.44  Aligned_cols=112  Identities=7%  Similarity=0.047  Sum_probs=69.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEE-eCCCcEEEEECCCCceeeeecC----C
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAG-TEDVQVRLCDIASGAISQTLSG----H  189 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~-s~d~~I~vwdl~~~~~~~~l~~----h  189 (441)
                      ++++.++.|+.|.-.|..+|+.+-+++..  .+.....-.....+...++.. +.||.+..+|.++|.....+.-    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999998887754  222211101111122344443 6899999999998854433221    1


Q ss_pred             CCCeEE---EEE------ecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545          190 RDGIMT---VEW------STSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (441)
Q Consensus       190 ~~~v~~---v~f------sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~  230 (441)
                      ..++..   ...      +.+ . .+.+|+.+|.+.--|+++|+.+-.+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~-g-~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVED-E-KVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEEECC----------CC-E-EEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             ccccccCCCceeecccccccC-C-EEEEEecCCEEEEEECCCCcEEEEEe
Confidence            122211   000      122 2 46789999999999999998766554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=80.18  E-value=12  Score=34.43  Aligned_cols=104  Identities=15%  Similarity=0.182  Sum_probs=54.9

Q ss_pred             cCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCce-eeeeeeEE-eccCcceEEEeeCC---CcEEEEeC---------
Q 013545          305 GAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNT-LVNFETVR-LQTSKPIQLATTQD---PAVVFVPC---------  369 (441)
Q Consensus       305 ~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~---------  369 (441)
                      .....|+|.|+|+ .++ +...++|++++....... ........ .....+.-+++.|+   ...+++..         
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            3467899999999 665 456789999985421100 00010000 01234456788875   34444431         


Q ss_pred             CCceEEEEccCC--c--eEe----eec-----ccccceEEEEEcCCCCeEEEeec
Q 013545          370 MTAVKAFDIWSG--K--TCL----TFR-----GHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       370 ~~~~~~wd~~~~--~--~~~----~l~-----gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                      ...+..+++...  .  ...    .+.     .|.  -..++|.|||.++++.+.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECC
Confidence            123444555332  1  111    121     132  367999999977777544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	441
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (202), Expect = 4e-18
 Identities = 47/377 (12%), Positives = 107/377 (28%), Gaps = 76/377 (20%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H+  +  +         ++S + D+++ V+D +                     ++   G
Sbjct: 16  HRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDF-----------------ERTLKG 57

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H  ++    +      L    +              +         V   ++ P   +  
Sbjct: 58  HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP---NGD 114

Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
            I + + D  +++ ++ +G   +T +GHR+ +  V  +     I  +   D  +R W + 
Sbjct: 115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI-ASCSNDQTVRVWVVA 173

Query: 222 RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281
              C   L + +            + +S    SS    +    S      +        +
Sbjct: 174 TKECKAELREHRHV---------VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 341
           +    +               H   V G+     G ++LS   D  +R+WD ++      
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK----- 279

Query: 342 NFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401
                     + ++                              T   H  +V    F  
Sbjct: 280 ----------RCMK------------------------------TLNAHEHFVTSLDFHK 299

Query: 402 QDQELYTGGNDRQILVW 418
               + TG  D+ + VW
Sbjct: 300 TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 39/162 (24%)

Query: 301 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR----------------------- 337
           + H   VT +        ++SA  D+ I++WD E+G                        
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 338 ----------------NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG 381
                                        +            +V       +K +++ +G
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 382 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423
               TF GH E+V     +     + +  ND+ + VW  +  
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 32/184 (17%)

Query: 57  RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116
           +Y+ +G+ D +V V+D +                    + +   GHK ++ S ++   D 
Sbjct: 218 KYIAAGSLDRAVRVWDSETG----------FLVERLDSENESGTGHKDSVYSVVFTR-DG 266

Query: 117 GLFVTGSYDHYVKVWDT-------------NCTRVVMNFKMPGKVYRTAMSPLAASHMLI 163
              V+GS D  VK+W+              + T  V        V   A +    +   I
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ---NDEYI 323

Query: 164 AAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW-----ILVTGGCDGAIRFW 218
            +G++D  V   D  SG     L GHR+ +++V  +  S       +  TG  D   R W
Sbjct: 324 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

Query: 219 DIRR 222
             ++
Sbjct: 384 KYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 7e-15
 Identities = 65/384 (16%), Positives = 116/384 (30%), Gaps = 68/384 (17%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT-DYEGGGHIAKHRSVFVVDKQHEH 100
           H   +  ++    +  YL +G  + +  VY V   +         A ++    ++     
Sbjct: 61  HTSVVCCVKFS-NDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
                I S  + P D     TG+ D  +++WD    ++VM  +   +   +       S 
Sbjct: 119 SSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF--PSG 175

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
             + +G+ D  VR+ D+ +G  S T     DG+ TV  S      +  G  D A+R WD 
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280
                   LD                +       SV      +   +G+  R   +  + 
Sbjct: 235 ETGFLVERLDSENESG----------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284

Query: 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340
              +      P   + +     H   V  +  T++  Y+LS   D  +  WD +SG    
Sbjct: 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---- 340

Query: 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC-- 398
                       P+                                 +GH   V      
Sbjct: 341 -----------NPLL------------------------------MLQGHRNSVISVAVA 359

Query: 399 ----FSSQDQELYTGGNDRQILVW 418
                  +     TG  D +  +W
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 23/243 (9%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
                H   +  V++S   E++    GC+   + + +        L  S      + P  
Sbjct: 56  HKSLDHTSVVCCVKFSNDGEYLAT--GCNKTTQVYRVSDGSLVARL--SDDSAANKDPEN 111

Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303
              S S   +  +              V  S  G+  A G+  + +    + ++      
Sbjct: 112 LNTSSSPSSDLYI------------RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA 363
            G    +   +         S S  R   +   R    +           + ++      
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 364 VVFVPCMTAVKAFDIWSGKTCLT-------FRGHYEYVNCCCFSSQDQELYTGGNDRQIL 416
           +       AV+ +D  +G              GH + V    F+   Q + +G  DR + 
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 417 VWC 419
           +W 
Sbjct: 280 LWN 282

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 1e-15
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
           GH+  I++  ++P +   F TGS D   +++D    + +M +     +        + S 
Sbjct: 224 GHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
            L+ AG +D    + D      +  L+GH + +  +  +      + TG  D  ++ W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.0 bits (154), Expect = 6e-12
 Identities = 52/319 (16%), Positives = 87/319 (27%), Gaps = 60/319 (18%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSV-------------------AVYDVQRATDYEGG 82
           H   I ++    T+ R L+S + D  +                    V     A      
Sbjct: 54  HLAKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 83  GHIAKHRSVFVVD-KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMN 141
                     + + K  E   + +   A      +               DT C    + 
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 142 FKMPGKVYRTAMSPLAASHM-----LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196
                  +      + +  +     L  +G  D   +L D+  G   QT +GH   I  +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256
            +  +      TG  D   R +D+R               G                   
Sbjct: 233 CFFPNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGI------------------ 273

Query: 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRA---TAHYGAVTGLKVT 313
                         V  S  GR+   G      +       DRA     H   V+ L VT
Sbjct: 274 ------------TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

Query: 314 EDGMYLLSAGSDSRIRLWD 332
           +DGM + +   DS +++W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 29/290 (10%), Positives = 79/290 (27%), Gaps = 23/290 (7%)

Query: 146 GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI 205
            K+Y            L+ + ++D ++ + D  +      +      +MT  ++ S  ++
Sbjct: 56  AKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265
              G  +     ++++       + +  +         +    +    SS          
Sbjct: 113 ACGGLDN-ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT----------------AHYGAVTG 309
             G      +                  +S    A+                 H   +  
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231

Query: 310 LKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC 369
           +    +G    +   D+  RL+D+ + +       +          ++ ++   ++    
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 370 MT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
                  +D           GH   V+C   +     + TG  D  + +W
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 42/254 (16%), Positives = 68/254 (26%), Gaps = 24/254 (9%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
           +TL GH   I  + W T S   LV+   DG +  WD         +    S +       
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107

Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303
               ++ G   ++      K       V +   G        R      +++S    T  
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167

Query: 304 Y----------------GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
                            G V  L +  D    +S   D+  +LWDV  G       +T  
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR----QTFT 223

Query: 348 LQTSKPIQLATTQDPAVVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ 404
              S    +    +              +            +       +    FS   +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 405 ELYTGGNDRQILVW 418
            L  G +D    VW
Sbjct: 284 LLLAGYDDFNCNVW 297

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423
            K +D+  G    TF GH   +N  CF        TG +D    ++     
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 30/318 (9%), Positives = 73/318 (22%), Gaps = 20/318 (6%)

Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174
                +  +Y + + V D     V  +  MP K           +            +  
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 175 CDIASGAI------SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
            D+ +         S         + +   S   + +  T      +    + +     V
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR 288
              +     +               ++         +           G+      +R  
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV--AGPDIYKMDVKTGKYTVALPLRNW 184

Query: 289 LHPGMLSSQDR--------ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340
              G  +                    T  +  +D     +A         D+++G+   
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--- 241

Query: 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400
            + +     T        +          +  +  +D+   K  +          C  F 
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK-LIKAANLDHTYYCVAFD 300

Query: 401 SQDQELYTGGNDRQILVW 418
            +  +LY GG    + V+
Sbjct: 301 KKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 31/326 (9%), Positives = 79/326 (24%), Gaps = 19/326 (5%)

Query: 16  NSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQR 75
            ++ N +    +++  +  YK  V P K    +  +        +       +   D+  
Sbjct: 14  TNYPNNLHVVDVASDTV--YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 71

Query: 76  ATDY----EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW 131
             +              RS++      +    YA  +    P              ++V+
Sbjct: 72  CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN----PTQRLNDHYVVKPPRLEVF 127

Query: 132 DTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191
            T         +      +  +   A    L  AG     +   D+ +G  +  L    +
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP---DIYKMDVKTGKYTVALPLR-N 183

Query: 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251
                  +    +                         D + + L      +  K+    
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT---- 239

Query: 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK 311
              +              G+R             R   +        +A         + 
Sbjct: 240 -GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVA 298

Query: 312 VTEDGMYLLSAGSDSRIRLWDVESGR 337
             + G  L   G+ + + +++ ++  
Sbjct: 299 FDKKGDKLYLGGTFNDLAVFNPDTLE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 13/119 (10%)

Query: 309 GLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQLATTQDPAVVFV 367
           G  +     Y++     + + + DV S        ++  +     P       D    +V
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVY----KSCVMPDKFGPGTAMMAPDNRTAYV 56

Query: 368 PCMT--AVKAFDIWSGK------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
                  +   D+ + K                 +     S   +E+Y   N  Q L  
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 5e-12
 Identities = 55/313 (17%), Positives = 110/313 (35%), Gaps = 51/313 (16%)

Query: 40  SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--------------------DY 79
           S     +  LQ D   ++ ++SG  D+++ ++D                           
Sbjct: 12  SETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 80  EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV 139
             G   +  R   V   +  +   +   + +    + G+ VT S D  + VWD      +
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128

Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
              ++    +R A++ +      I + + D  +++ + ++    +TL+GH+     +   
Sbjct: 129 TLRRVL-VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---RGIACL 184

Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
              + ++V+G  D  IR WDI    C RV  +   +L R      ++ +S   +  +K  
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRV-LEGHEELVRCIRFDNKRIVSGAYDGKIK-- 241

Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
                      V        P   +    L             H G V  L+   D   +
Sbjct: 242 -----------VWDLVAALDPRAPAGTLCLR--------TLVEHSGRVFRLQF--DEFQI 280

Query: 320 LSAGSDSRIRLWD 332
           +S+  D  I +WD
Sbjct: 281 VSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 44/274 (16%), Positives = 84/274 (30%), Gaps = 13/274 (4%)

Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS-------SEWILVT 208
           L      I +G  D  +++ D  +    + L+GH   ++ +++             + V 
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80

Query: 209 GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268
               G +    I        L  +   +                 + +  R         
Sbjct: 81  DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140

Query: 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 328
             V       I +    R        + +   T +        +      ++S  SD+ I
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 200

Query: 329 RLWDVESG---RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL 385
           RLWD+E G   R    + E VR       ++ +      + V  + A       +G  CL
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 386 -TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
            T   H   V    F   + ++ +  +D  IL+W
Sbjct: 261 RTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 40/245 (16%), Positives = 71/245 (28%), Gaps = 20/245 (8%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD----------QSQ 233
              S    G+  +++       +V+G  D  I+ WD     C R+L             +
Sbjct: 9   HCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM 293
             +         +         +        +          +       S+        
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 294 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353
                R            V  D  Y++SA  D  I++W+  +       F        + 
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----FVRTLNGHKRG 180

Query: 354 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413
           I     +D  VV       ++ +DI  G       GH E V C  F   ++ + +G  D 
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 238

Query: 414 QILVW 418
           +I VW
Sbjct: 239 KIKVW 243

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 34  NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV 93
                +   +G    ++    + + ++SGA D  + V+D+  A D          R++  
Sbjct: 206 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-- 263

Query: 94  VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD 132
                   H   +    +   D    V+ S+D  + +WD
Sbjct: 264 ------VEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (155), Expect = 6e-12
 Identities = 42/369 (11%), Positives = 90/369 (24%), Gaps = 39/369 (10%)

Query: 57  RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116
             +    ++  V +Y+        G   +  H             H   ++   W P D+
Sbjct: 20  TQIAICPNNHEVHIYEK------SGNKWVQVHEL---------KEHNGQVTGVDWAP-DS 63

Query: 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176
              VT   D    VW            +            A +    A G+    + +C 
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 177 IASGAISQTLSGHRDGIM---TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ 233
                        +  I           +  +L  G CD   R +           ++  
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV----EERP 179

Query: 234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM 293
           +       +   + +    +S          +        S    +              
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV-------CLADADK 232

Query: 294 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353
             +     +    +  +    +   L++AG D    L+  +S    L    +   +   P
Sbjct: 233 KMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKL----SFGGRLDVP 287

Query: 354 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ----ELYTG 409
            Q +     A      +    + +  +         H   V+     S  +    +  T 
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347

Query: 410 GNDRQILVW 418
           G D  + +W
Sbjct: 348 GMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 34/324 (10%), Positives = 89/324 (27%), Gaps = 21/324 (6%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G +  +     +   +++  +D +  V+ ++  T       +  +R+   V       
Sbjct: 50  HNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108

Query: 102 HKYAI----SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLA 157
                      +I Y      +    +                N  +           + 
Sbjct: 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
           ++++               +  G +    S     +  V +S +   +         +  
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-STVCL 227

Query: 218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277
            D  +      L      L     + +   ++AG +           +   +   +  V 
Sbjct: 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVP 287

Query: 278 RIPAKGSVRQRLHPGMLSSQDRA-----------TAHYGAVTGLKVTEDG----MYLLSA 322
           +  ++  +  R     L  +  +           + H  +V+ + V   G        + 
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347

Query: 323 GSDSRIRLWDVESGRNTLVNFETV 346
           G D  + +WDV S  + L + + V
Sbjct: 348 GMDGGMSIWDVRSLESALKDLKIV 371

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 34/274 (12%), Positives = 69/274 (25%), Gaps = 40/274 (14%)

Query: 162 LIAAGTEDVQVRLCDIASGAISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
            IA    + +V + + +     Q   L  H   +  V+W+  S   +VT G D     W 
Sbjct: 21  QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYVWT 79

Query: 220 IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279
           ++       L   +                      V+    +K+ A G+G R  S+   
Sbjct: 80  LKGRTWKPTLVILRIN---------------RAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339
             +       H                V  L    + + L +   D + R++        
Sbjct: 125 EQENDWWVCKHIKK--------PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176

Query: 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD------------IWSGKTCLTF 387
                T         +L      +  +V  +                   +      +  
Sbjct: 177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236

Query: 388 RGHYEYVN--CCCFSSQDQELYTGGNDRQILVWC 419
                            +  L   G+D   +++ 
Sbjct: 237 ATLASETLPLLAVTFITESSLVAAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 10/123 (8%), Positives = 27/123 (21%), Gaps = 43/123 (34%)

Query: 301 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ 360
           +     ++     +D   +    ++  + +++    +   V+                  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH------------------ 45

Query: 361 DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420
                                      + H   V    ++     + T G DR   VW  
Sbjct: 46  -------------------------ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80

Query: 421 SRH 423
              
Sbjct: 81  KGR 83

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 16/146 (10%), Positives = 38/146 (26%), Gaps = 11/146 (7%)

Query: 301 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ 360
             H G VTG+    D   +++ G+D    +W ++              + ++ ++     
Sbjct: 48  KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR----W 103

Query: 361 DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEY-------VNCCCFSSQDQELYTGGNDR 413
            P        +  +   I   +    +             V    +      L  G  D 
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163

Query: 414 QILVWCPSRHISDGVDAGPMQDQDNW 439
           +  ++       +   A         
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMP 189

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 7e-11
 Identities = 43/410 (10%), Positives = 105/410 (25%), Gaps = 66/410 (16%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+        + +S + D  + V+D +   +         H        +    
Sbjct: 13  HDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-----HKSGLH 64

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN-----------CTRVVMNFKMPGKVYR 150
           H   + +      +  L  T S+   +  +                 ++ +       + 
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 151 TAMSP--LAASHMLIAAGTEDVQVRLCDI-ASGAISQTLSGHRDGIMTVEWST------- 200
                         + A        +         S +L+ +    + ++ +        
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 201 --------SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252
                   S   ++ TG  +G ++  ++         +   S +     +          
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-------SV 237

Query: 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV 312
             S +         + +    +       +      +      +     AH   V  L  
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 313 TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT----SKPIQLATTQDPAVVFVP 368
            + G  L SAG D ++R WDV++           R+ T       I++       +    
Sbjct: 298 NDSGETLCSAGWDGKLRFWDVKTKE---------RITTLNMHCDDIEIEED---ILAVDE 345

Query: 369 CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
              ++    ++  K                 +  ++ L     DR I  +
Sbjct: 346 HGDSLAEPGVFDVKFLKKG------WRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 8e-08
 Identities = 43/343 (12%), Positives = 94/343 (27%), Gaps = 63/343 (18%)

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
            H   I S           V+ S D Y+KVWD                            
Sbjct: 12  AHDADIFSVSACN---SFTVSCSGDGYLKVWDNK-------------------------- 42

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
                   D +       S  + ++   H D +  +E       ++ T    G + F+ I
Sbjct: 43  ------LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI 96

Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280
            R    + +   +  L      +K+ S  A +  +   R    R    +    + + +  
Sbjct: 97  TREDETKKVIFEKLDLLDSD--MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154

Query: 281 AKGSVRQRL------HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334
                   L         +  + +         T + ++E G  + +  ++  +++ ++ 
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 213

Query: 335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW--------------- 379
           + R          +  +     +    P    +       +F                  
Sbjct: 214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 273

Query: 380 ----SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
               S +  L    H  +V    F+   + L + G D ++  W
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 30/257 (11%), Positives = 63/257 (24%), Gaps = 32/257 (12%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
                H   I +V    S     V+   DG ++ WD +        D+S S    +  L 
Sbjct: 8   NAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303
               L A +  + +       S +G+ +    + R      V       + S   + +  
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGD-LLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA 363
                          L++        +W      +   +                     
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-------------------- 163

Query: 364 VVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423
                  T   +  +    T  +     ++      S     + TG N+  + +   S  
Sbjct: 164 -------TLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTL 215

Query: 424 ISDGVDAGPMQDQDNWS 440
                        +N +
Sbjct: 216 RPLYNFESQHSMINNSN 232

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 34/221 (15%), Positives = 65/221 (29%), Gaps = 13/221 (5%)

Query: 20  NRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY 79
           N +  +   TL+L    E          S  VD++E   + +G ++ +V + ++      
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATS--VDISERGLIATGFNNGTVQISELSTLRPL 218

Query: 80  EGGGHIAKHRSVF-----VVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134
                     +       V           A  S  +  +       G     + V   +
Sbjct: 219 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 278

Query: 135 CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194
               +  F     V   + +    S   + +   D ++R  D+ +     TL+ H D I 
Sbjct: 279 SQASLGEFAHSSWVMSLSFND---SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335

Query: 195 TVEWS---TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQS 232
             E           L   G           R+G    L++S
Sbjct: 336 IEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 376

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 10/107 (9%), Positives = 27/107 (25%), Gaps = 12/107 (11%)

Query: 294 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353
           +++ +   AH   +  +       + +S   D  +++WD +   N     ++      K 
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 354 IQLATTQDPAVVFVPCMTA----------VKAFDIWSGKTCLTFRGH 390
                    A+                  +  + I            
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE 108

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.2 bits (144), Expect = 1e-10
 Identities = 23/309 (7%), Positives = 67/309 (21%), Gaps = 13/309 (4%)

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR-TAMSPLAASHMLIAAGTEDVQVRLCD 176
             +  +    + V DT    V     +                 +  A   +   +   D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 177 IASGAISQTLSGHRDGIMT-----VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231
           + +G     +                 S   + + +              +     + D 
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 232 SQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 291
                 +     ++ ++ A      K     +     +    + V   P +    +    
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182

Query: 292 --GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 349
              +       ++   A       +D          + +   D+E+G   +         
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR----I 238

Query: 350 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 409
                                  +++FD+    +                S+    ++ G
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLG 297

Query: 410 GNDRQILVW 418
           G    +  +
Sbjct: 298 GALGDLAAY 306

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 35/305 (11%), Positives = 80/305 (26%), Gaps = 29/305 (9%)

Query: 37  EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK 96
           +I    K  I+ +++    +  LL  + D S+ VY                      VD 
Sbjct: 5   QIEQAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAK--------------NVDL 49

Query: 97  QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN----CTRVVMNFKMPGKVYRTA 152
                +K+ +    +          G+    +   D         +  N    G      
Sbjct: 50  LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK 109

Query: 153 MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212
                          E +  R       A+    S +      +    ++   L+ G  +
Sbjct: 110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169

Query: 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272
             ++++ +          +      +                  +       S +G  V 
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRD---------VALLPKEQEGYACSSIDGR-VA 219

Query: 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332
                      +  +R          + T     V  ++ +    +L +AGSD  I  W+
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279

Query: 333 VESGR 337
           +++ +
Sbjct: 280 LQTRK 284

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 10/178 (5%)

Query: 20  NRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY 79
           ++V+  RL   +  N     S  K  I  + +   E+      + D  VAV       D 
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

Query: 80  EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV 139
                    R   +  K     +     ++I +        T   D  +  W+    + +
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPV---NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286

Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197
            NF    +     ++    S  ++   T D   +     + AI QT+  +   I  + 
Sbjct: 287 KNFAKFNEDSVVKIAC---SDNILCLATSDDTFKT----NAAIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 44/326 (13%), Positives = 90/326 (27%), Gaps = 56/326 (17%)

Query: 97  QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD----TNCTRVVMNFKMPGKVYRTA 152
           Q E   K  IS     P    L +  S+D  + V+          ++ + +    +    
Sbjct: 5   QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 153 MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212
                 + + I  GT   ++   D+      Q L+ +   +         +  L+    D
Sbjct: 64  FID--NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272
           G I   D R  G   +  ++ +                  N+ VK +     + +   + 
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLN----------------SNNTKVKNKIFTMDTNSSRLIV 165

Query: 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332
             +  ++            G     + +   Y       + ++      +  D R+ +  
Sbjct: 166 GMNNSQVQWFRLPLCEDDNGT---IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

Query: 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE 392
            +   +                                 + K F     +  L       
Sbjct: 223 FDDQGDDY------------------------------NSSKRFAFRCHRLNLKDTNLAY 252

Query: 393 YVNCCCFSSQDQELYTGGNDRQILVW 418
            VN   FS + + LYT G+D  I  W
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCW 278

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 10/122 (8%), Positives = 23/122 (18%), Gaps = 42/122 (34%)

Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 361
           A    ++ +K+      LL    D  + ++  +                           
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------- 46

Query: 362 PAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421
                                  L    +   + CC F          G  +  ++    
Sbjct: 47  --------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86

Query: 422 RH 423
             
Sbjct: 87  IG 88

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 34/319 (10%), Positives = 79/319 (24%), Gaps = 21/319 (6%)

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAAS 159
           GH  ++ + + +  +    +TG+ D  ++V+D+   + ++      G V+    +     
Sbjct: 10  GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH---G 64

Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
            +L++  T+                    +            +   +VTG  D  +  W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 220 IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279
           + +        +                L               R    +    S  G I
Sbjct: 125 LPKESSVPDHGEEH-----------DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173

Query: 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339
              GS    L    ++           ++G                      D       
Sbjct: 174 VVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 229

Query: 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399
           L N E +         +   +      V            +      F  H+  ++    
Sbjct: 230 LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 289

Query: 400 SSQDQELYTGGNDRQILVW 418
                 +   G++ Q  ++
Sbjct: 290 FYVSDNILVSGSENQFNIY 308

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 50/407 (12%), Positives = 112/407 (27%), Gaps = 97/407 (23%)

Query: 42  HKGSINS-LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100
           H  S+ + LQ +   + Y+++GA D  + VYD              K             
Sbjct: 11  HMTSVITCLQFE---DNYVITGADDKMIRVYDSIN----------KKFLLQL-------S 50

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
           GH   + +  +     G+ V+GS D  V+VWD         F+      R        + 
Sbjct: 51  GHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDG--------------------IMTVEWST 200
             I  G+ D  + +  +   +         D                     + +V   +
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

Query: 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260
               I+V+G  D  +  WD+ +  C  +L     ++       +RK   +    +     
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228

Query: 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHP---------GMLSSQDRATAHYGAVTGLK 311
             +       ++  +      + S +  +                  + + H+  ++ + 
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 288

Query: 312 VTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT 371
                  +L +GS+++  ++++ SG+                                  
Sbjct: 289 TFYVSDNILVSGSENQFNIYNLRSGKLVHA------------------------------ 318

Query: 372 AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
                               + +    F      +     D Q  + 
Sbjct: 319 --------------NILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 18/133 (13%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 89  RSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV 148
           R   + + +  +  +   +      +     V+ + D  ++ WD N      ++      
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285

Query: 149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSSEWILV 207
             T       S  ++ +G+E+ Q  + ++ SG  +   +    D I +V +    + ++ 
Sbjct: 286 AITTFYV---SDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTLVA 339

Query: 208 TGGCDGAIRFWDI 220
               DG      +
Sbjct: 340 AVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230
           TL GH   ++T        + ++TG  D  IR +D         L 
Sbjct: 7   TLRGHMTSVITC-LQFEDNY-VITGADDKMIRVYDSINKKFLLQLS 50

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV 170
               D    V+GS D  ++VWD      +         +++  S +     ++ +G  D 
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNADS 237

Query: 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230
            V++ DI +G   QTL G       V     ++  ++T   DG ++ WD++     R L 
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 231 QSQS 234
             +S
Sbjct: 298 TLES 301

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 54/339 (15%), Positives = 106/339 (31%), Gaps = 35/339 (10%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAA 158
            GH   + + + +       V+GS D+ +KVW     + +       G V+ + M     
Sbjct: 13  KGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 70

Query: 159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
                    +               + +        TV      E  +V+G  D  +R W
Sbjct: 71  ISGSTDRTLKVWNAETG--------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA-------NGNGV 271
           DI    C  VL    + + R      R+ +S   +  VK   P+  +             
Sbjct: 123 DIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 181

Query: 272 RQSSVGRIPAKGSVRQRLH---PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 328
                G     GS+   +        +     T H    +G+++ ++   L+S  +DS +
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTV 239

Query: 329 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR 388
           ++WD++      +       +    +         V+       VK +D+ +G+      
Sbjct: 240 KIWDIK--TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 389 -----GHYEYVNCCCFSSQDQELYTGGND----RQILVW 418
                G    V     S+       G  +     ++LV 
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 48/340 (14%), Positives = 95/340 (27%), Gaps = 60/340 (17%)

Query: 42  HKGSINS-LQVDLTEERYLLSGASDSSVAVYDVQ---------------RATDYEGGGHI 85
           H   + + LQ        ++SG+ D+++ V+                   ++       I
Sbjct: 15  HDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71

Query: 86  AKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV-----TGSYDHYVKVWDTNCTRVVM 140
           +      +     E G            V           +GS D  ++VWD    + + 
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131

Query: 141 NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST 200
                    R            + +G  D  V++ D  +     TL GH      V    
Sbjct: 132 VLMGHVAAVRCVQYD----GRRVVSGAYDFMVKVWDPETETCLHTLQGHT---NRVYSLQ 184

Query: 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ---SQLGRRPPLLKRKSLSAGQNSSVK 257
                +V+G  D +IR WD+    C   L   Q   S +  +  +L    +S   +S+VK
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL----VSGNADSTVK 240

Query: 258 ----------PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD--------R 299
                                               S    +    L + +         
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 300 ATAHYGAVTGLKVTEDGMYLLSAGSD----SRIRLWDVES 335
           +    G V  ++ +   +       +    +++ + D + 
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 14/174 (8%), Positives = 43/174 (24%), Gaps = 11/174 (6%)

Query: 57  RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116
           + L   +  S     D                   FV+       +   +          
Sbjct: 191 KNLYYLSYRSLDPSPDRVV-----LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176
              +   Y       + +     M   +   +   ++              E   +   D
Sbjct: 246 EYDLNDMYKRSSP-INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230
           + +      ++  ++ +  +  S   +  ++    DG I  + + +    R ++
Sbjct: 305 VKTR----KVTEVKNNLTDLRLSADRKT-VMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 20/226 (8%), Positives = 51/226 (22%), Gaps = 23/226 (10%)

Query: 111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV 170
           +          G     + V+D    ++          Y  A          +   +   
Sbjct: 144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA---DSKNLYYLSYRS 200

Query: 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230
                D      S  +      I  +  S +   ++       A  +           ++
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260

Query: 231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 290
                     PL     + +                                   +  L 
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHG-------------------EFAAYYQGAPEKGVLL 301

Query: 291 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336
              + ++ + T     +T L+++ D   ++    D +I  + +E  
Sbjct: 302 KYDVKTR-KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 34/378 (8%), Positives = 75/378 (19%), Gaps = 76/378 (20%)

Query: 41  PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100
           P    I  ++    + +      +     +      T   G     +     V     + 
Sbjct: 40  PEPLRIRYVRR-GGDTKVAFIHGTREGDFLGIYDYRT---GKAEKFEENLGNVFAMGVDR 95

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
             K+A+ +   + + T    TG      +  +   T   ++       Y   +       
Sbjct: 96  NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL------K 149

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
                G     + + D+    I    + +         +      L            D 
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDR 207

Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280
                   +      +                  S  P     RS               
Sbjct: 208 VVLNFSFEVVSKPFVI-------------PLIPGSPNPTKLVPRSMTSEAGEYDLNDM-- 252

Query: 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340
            K S    + PG         +     +     E   Y   A     +  +DV++ + T 
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT- 311

Query: 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400
                                                                +     S
Sbjct: 312 ------------------------------------------------EVKNNLTDLRLS 323

Query: 401 SQDQELYTGGNDRQILVW 418
           +  + +    +D +I  +
Sbjct: 324 ADRKTVMVRKDDGKIYTF 341

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 3/127 (2%)

Query: 97  QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL 156
           +  H     +    + P      +T   D  +  +D      +   +   +  +  +  L
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 157 AASHM-LIAAGTEDVQVRLCDIASGAISQTLSGHRD--GIMTVEWSTSSEWILVTGGCDG 213
           +       A    D  +R+ D+ +    Q  +  +   G   V    +    +++   DG
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 214 AIRFWDI 220
            + F+++
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 32/282 (11%), Positives = 64/282 (22%), Gaps = 38/282 (13%)

Query: 90  SVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--- 146
            +       +      +S   + P    +        +V+  D   ++V    +  G   
Sbjct: 7   EIIPPQPSTQRNFTTHLS---YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 147 -KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--------SGHRDGIMTVE 197
             V     SP       + +G E  +V +        S ++              I  + 
Sbjct: 64  SVVTTVKFSP-IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

Query: 198 WSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256
           W        +V  G D    F           +     ++        R   S       
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA---------- 306
                Q      +   ++   +      V      G       +                
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242

Query: 307 -----------VTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337
                              D     + G+D+ IR+WDV + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 35/325 (10%), Positives = 76/325 (23%), Gaps = 56/325 (17%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT------RVVMNFKMPGKVYRTAM 153
            GH   I++    P      ++GSYD  +  W ++         +V       + Y +  
Sbjct: 10  SGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS 64

Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG 213
                    I       Q ++    +   +  L+   D ++   ++      +       
Sbjct: 65  WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124

Query: 214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273
           A+       A      +  Q        +            S    +P +       V  
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333
             +        V+        S  +  +         +   +   + +   D+ I ++ V
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244

Query: 334 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEY 393
           +                                               K       H + 
Sbjct: 245 KRP--------------------------------------------MKIIKALNAHKDG 260

Query: 394 VNCCCFSSQDQELYTGGNDRQILVW 418
           VN   + +    L + G D  I  W
Sbjct: 261 VNNLLWET-PSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 131 WDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH 189
                 R      +  K      +       L+A G+ D  + +  +     I + L+ H
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257

Query: 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
           +DG+  + W T S   LV+ G D  I+ W++
Sbjct: 258 KDGVNNLLWETPS--TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 30/310 (9%), Positives = 81/310 (26%), Gaps = 53/310 (17%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ----------RATDYEGGGHIAKHRSV 91
           H   I +L V+      L+SG+ D  +  +              + D       +     
Sbjct: 12  HNKGITALTVN-----PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD 66

Query: 92  FVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--- 148
             +       H++     +    + G     + D  + +  +    ++ + ++       
Sbjct: 67  DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 149 -----YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203
                Y         +  +      +V   L        S       +  +         
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263
            +      +     W  R +    +  +   +      + +    +   ++++       
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF------ 240

Query: 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG 323
                       +  +     + + L+           AH   V  L        L+S+G
Sbjct: 241 ------------IYSVKRPMKIIKALN-----------AHKDGVNNLLWETPS-TLVSSG 276

Query: 324 SDSRIRLWDV 333
           +D+ I+ W+V
Sbjct: 277 ADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
           +T+SGH  GI  +  +      L++G  DG I  W   
Sbjct: 7   KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS 39

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           G+I Q   GH   I  +  S   +  L +   +G I  WDI      RV     +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHA 55

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 3e-05
 Identities = 33/331 (9%), Positives = 73/331 (22%), Gaps = 56/331 (16%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS 159
           +GH  AI++      D     +   + ++  WD +       F        T +   +  
Sbjct: 9   YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 160 HMLIAAGTEDV------------QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILV 207
            +   +  + +               + +  S             I              
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 208 TGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN 267
               +  I +     A        +      +  + K    S  +  ++   A     A 
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR 327
            N            K       +   L+  +  T H   V  +  + D + L +   D+ 
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 328 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF 387
           + +W++                                              S    +  
Sbjct: 248 VIVWNMNKP-------------------------------------------SDHPIIIK 264

Query: 388 RGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
             H            +  + + G D  I  W
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 5e-05
 Identities = 34/295 (11%), Positives = 78/295 (26%), Gaps = 11/295 (3%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ--RATDYEGGGHIAKHRSVFVVDKQHE 99
           H  +I +L     + + L S  ++  +  +D+    +       H      +    K   
Sbjct: 11  HNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS 159
               +     +     +G+    S         +    + ++      V          S
Sbjct: 70  FTVSWDDHLKVVPAGGSGV---DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           H  +             +++      + G    +   + S +S   + T      I    
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 220 IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279
               G F V      ++         +       +    +      +  N    +     
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG---- 242

Query: 280 PAKGSVRQ-RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333
               SV    ++           AH  +     +  +   ++SAG DS I+ W+V
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
              +  +D  +       GA           +++ + S   ++I VTG  D     +++
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 88  HRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK 147
              V   DK   H H+  + S  +       FV+   D+ +  W T     +   K    
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308

Query: 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
           V    +S        I  G+ D +  + ++
Sbjct: 309 VLSCDISV---DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 37/337 (10%), Positives = 79/337 (23%), Gaps = 65/337 (19%)

Query: 98  HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN------CTRVVMNFKMPGKVYRT 151
           +   H   + +       T    TG     VKVWD +          +        +   
Sbjct: 46  NTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC 103

Query: 152 AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC 211
            + P     +++      + +      +  I   L+        +  S  S+        
Sbjct: 104 KLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162

Query: 212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271
                +    +    +    +             K  + G +++V+    ++        
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222

Query: 272 RQSSVGRI----------PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS 321
             S +  +              S    +       + +   H   V  LK    G + +S
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS 282

Query: 322 AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG 381
            G D+ +  W    G                                             
Sbjct: 283 TGKDNLLNAWRTPYGA-------------------------------------------- 298

Query: 382 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
              +        V  C  S  D+ + TG  D++  V+
Sbjct: 299 --SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 26/302 (8%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   + ++ +     R++ +G     V V+D+                +   V +     
Sbjct: 50  HGEVVCAVTIS-NPTRHVYTG-GKGCVKVWDIS------------HPGNKSPVSQLDCLN 95

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
               I S    P D    + G     + +WD       +  ++           ++    
Sbjct: 96  RDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154

Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
           +  +   D  + + D+ +  + +   GH DG   ++ S      L TGG D  +R WD+R
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLR 213

Query: 222 RAGCFRVLDQSQSQLG--------RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273
                +  D +                  ++  ++     +           +    ++ 
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273

Query: 274 SSVGRIPAKGSV--RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
           +  G+                   +    +    +V    ++ D  Y+++   D +  ++
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 332 DV 333
           +V
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 14/137 (10%), Positives = 30/137 (21%), Gaps = 41/137 (29%)

Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
           H   V  + ++    ++ + G    +++WD+    N                        
Sbjct: 50  HGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGN------------------------ 84

Query: 363 AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422
                            S  + L       Y+  C        L  GG    + +W  + 
Sbjct: 85  ----------------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128

Query: 423 HISDGVDAGPMQDQDNW 439
                           +
Sbjct: 129 PTPRIKAELTSSAPACY 145

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 8/119 (6%)

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
             VT      + + D +   +         V+ + +S    S   +     D +V + D+
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA---SGRYLFVIGRDGKVNMIDL 90

Query: 178 ASGAIS-----QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231
                +     +  S  R    +       ++ +            D       ++   
Sbjct: 91  WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 129 KVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188
                     + N    G V+    SP       IA+ + D  +++ ++A+  + +T+  
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSP---DGTKIASASADKTIKIWNVATLKVEKTIPV 278

Query: 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
                        ++  LV+   +G I F + 
Sbjct: 279 GTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 10/92 (10%), Positives = 21/92 (22%)

Query: 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 408
                + L  T     +     T+V    + S      +  H         S       +
Sbjct: 16  ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 409 GGNDRQILVWCPSRHISDGVDAGPMQDQDNWS 440
           G     + +W  ++         P+       
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF 226
           V    + S   ++  + H       + S  S +   +G   G +R WD  +    
Sbjct: 40  VYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHI 93

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 30/315 (9%), Positives = 73/315 (23%), Gaps = 25/315 (7%)

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
             VT      + + D +  ++V        V+ + MS    S   +     D ++ + D+
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA---SGRYLLVIGRDARIDMIDL 90

Query: 178 ASGAISQTL-----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQS 232
            +   ++          R    +        + +            D       +++   
Sbjct: 91  WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150

Query: 233 QSQLGRR--PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 290
              +  +   P  +  ++ A           ++         +               L 
Sbjct: 151 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210

Query: 291 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350
            G   S  R    Y         +  +        S +             NF       
Sbjct: 211 DGGWDSSHR----YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH---PK 263

Query: 351 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY--- 407
             P+   +      + +   T  K    ++ K     +G            +   LY   
Sbjct: 264 YGPVWSTSHLGDGSISL-IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 322

Query: 408 ----TGGNDRQILVW 418
                    + + V+
Sbjct: 323 TFNPDARISQSVAVF 337

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 5/147 (3%)

Query: 57  RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS----AIWY 112
             L+       +   D+            A   +      +     + A           
Sbjct: 207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 266

Query: 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQV 172
                 +   +   +V V D      +  F+M  ++    +S      +L A  T D  +
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ-DEKPLLYALSTGDKTL 325

Query: 173 RLCDIASGAISQTLSGHRDGIMTVEWS 199
            + D  SG   ++++    G   +  +
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 20/174 (11%), Positives = 39/174 (22%), Gaps = 26/174 (14%)

Query: 91  VFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR 150
             +   +  H     + +   Y    G  V  +Y   +   D +         +      
Sbjct: 181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240

Query: 151 TAMSPLAASHMLIAAGTED--------------------VQVRLCDIASGAISQTLSGHR 190
                         A                          V + D  +G          
Sbjct: 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH 300

Query: 191 DGIMTVEWSTSSEWIL-VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
             I ++  S   + +L      D  +   D       R ++    QLG  P ++
Sbjct: 301 -EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN----QLGHGPQVI 349

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 2/101 (1%)

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
            ++  S    + V D    +V     +        +SP      +  A      V + D 
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISP--DGTKVYVANAHSNDVSIIDT 61

Query: 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
           A+  +  T+                +  +            
Sbjct: 62  ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVID 102

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 1/124 (0%)

Query: 98  HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLA 157
           +      +       P  T ++V       + V DT    V+   K+       A++P  
Sbjct: 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG 211

Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +         V + D  +  I+  +    D    +  +   + + V       +  
Sbjct: 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSV 270

Query: 218 WDIR 221
            D  
Sbjct: 271 IDTA 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.59
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.45
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.38
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.18
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.12
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.88
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.85
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.67
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.6
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.52
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.44
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.24
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.16
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.05
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.03
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.86
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.78
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.44
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.35
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.79
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.61
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.59
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.45
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.69
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.45
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.11
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.66
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.42
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.02
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	87.37
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	84.0
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	82.31
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.14
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.6
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	81.23
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.13

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=304.49  Aligned_cols=283  Identities=18%  Similarity=0.272  Sum_probs=230.6

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      +|...|++++|+| ++++|+||+ ||+|+|||+.+.....         .+..   ....+|+..|.+++|+| ++++|+
T Consensus        49 ~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~---------~~~~---~~~~~h~~~I~~v~~s~-dg~~l~  113 (337)
T d1gxra_          49 NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKS---------PVSQ---LDCLNRDNYIRSCKLLP-DGCTLI  113 (337)
T ss_dssp             CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCS---------CSEE---EECSCTTSBEEEEEECT-TSSEEE
T ss_pred             CCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccc---------eeEE---eeecCCCCcEEEEEEcC-CCCEEE
Confidence            8999999999996 688999997 8999999997654321         0011   12347999999999987 789999


Q ss_pred             EEeCCCcEEEEECCCCeE--EEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          121 TGSYDHYVKVWDTNCTRV--VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +|+.|++|++||+.....  ...+.. ...+..+.++++   ..++++++.|+.|++||+.++++.....+|...|.+++
T Consensus       114 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~  190 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT---SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             Eeecccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc
Confidence            999999999999875543  334433 345667777764   35889999999999999999999999999999999999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      |+|++. .+++++.|+.|++||+++++.+..+                                                
T Consensus       191 ~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~------------------------------------------------  221 (337)
T d1gxra_         191 ISNDGT-KLWTGGLDNTVRSWDLREGRQLQQH------------------------------------------------  221 (337)
T ss_dssp             ECTTSS-EEEEEETTSEEEEEETTTTEEEEEE------------------------------------------------
T ss_pred             cccccc-ccccccccccccccccccceeeccc------------------------------------------------
Confidence            999987 5788999999999999876543221                                                


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                              .|.+.|++++|+|++.+|++|+.|+.+++||+.+.+..     ....+......++
T Consensus       222 ------------------------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~i~~v~  272 (337)
T d1gxra_         222 ------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-----QLHLHESCVLSLK  272 (337)
T ss_dssp             ------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-----EECCCSSCEEEEE
T ss_pred             ------------------------ccccceEEEEEcccccccceeccccccccccccccccc-----cccccccccceEE
Confidence                                    34567999999999999999999999999999876532     1223345566788


Q ss_pred             eeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          358 TTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       358 ~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      +++++..+++++. +.+++||+.+++.+..+. |.+.|.+++|+||+++|+||+.|++|+||++
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999998888765 679999999999887765 7889999999999999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-38  Score=291.01  Aligned_cols=306  Identities=17%  Similarity=0.285  Sum_probs=233.9

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      +..+.||.+.|++|+|+| ++++|||||.||+|+|||+.+++..                 ....+|...|.++.+++ +
T Consensus        10 ~~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~-----------------~~~~~h~~~V~~~~~~~-~   70 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE-----------------RTLKGHTDSVQDISFDH-S   70 (317)
T ss_dssp             SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCC-----------------EEECCCSSCEEEEEECT-T
T ss_pred             cEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEE-----------------EEEeCCCCcEEEEeeec-c
Confidence            345789999999999997 5789999999999999999876431                 12347999999999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~  194 (441)
                      +.++++++.++++.+|+.........+. ....+....+++..   ..+++++.|+.+++||+++++....+.+|...+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  147 (317)
T d1vyhc1          71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR  147 (317)
T ss_dssp             SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeccCCC---ceEEeeccCcceeEeecccceeeeEEccCCCcce
Confidence            8899999999999999988777655443 24456666677643   4788999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      +++|+|++. +|++++.|+.|++||++++.+...+......+.                                .+...
T Consensus       148 ~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~--------------------------------~~~~~  194 (317)
T d1vyhc1         148 MVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVE--------------------------------CISWA  194 (317)
T ss_dssp             EEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--------------------------------EEEEC
T ss_pred             eeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEecCCCCce--------------------------------EEEEe
Confidence            999999987 579999999999999998776665543211100                                00000


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  354 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  354 (441)
                      +.....                   ............+...+.++++++.|++|++||+.+++..    .....+.....
T Consensus       195 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~----~~~~~~~~~v~  251 (317)
T d1vyhc1         195 PESSYS-------------------SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTLVGHDNWVR  251 (317)
T ss_dssp             CSCGGG-------------------GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE----EEEECCSSCEE
T ss_pred             eccccc-------------------eeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE----EEEeCCCCCEE
Confidence            000000                   0000111223345567889999999999999999987532    23333455566


Q ss_pred             EEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      .+++++++.++++++. +.+++||+.+++++.++.+|.++|++++|+||+++|+|||.|++|+||+
T Consensus       252 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            7888999998887754 6899999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-38  Score=302.74  Aligned_cols=310  Identities=23%  Similarity=0.343  Sum_probs=228.0

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCC-CCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEG-GGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  119 (441)
                      +|.+.|+||+|+| ++++|+||+ |++|+|||+.++..... ..+................+|...|.+++|+| ++.+|
T Consensus        60 ~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l  136 (388)
T d1erja_          60 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFL  136 (388)
T ss_dssp             ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEE
T ss_pred             CCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcc
Confidence            6999999999997 678999987 89999999987653210 00000000000011122347888999999987 78999


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          120 VTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       120 ~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      ++|+.|++|++||...++.+..... ...+..+.+.+.   ...+++++.++.|++||+++.........+.. ..++.+
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~  212 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS---GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAV  212 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEE
T ss_pred             eecccccccccccccccccccccccccccccccccccc---cccccccccceeeeeeeccccccccccccccc-cccccc
Confidence            9999999999999999988777653 556777777764   34788899999999999999887776665554 455556


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  278 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (441)
                      +|....+|++++.|+.|++||++++.....+....                                             
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~---------------------------------------------  247 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN---------------------------------------------  247 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------------------------------------
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeecccc---------------------------------------------
Confidence            55444468999999999999998776544432100                                             


Q ss_pred             ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee--------eeeeEEecc
Q 013545          279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV--------NFETVRLQT  350 (441)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~--------~~~~~~~~~  350 (441)
                                         ....+|.++|++++|+|++.+|++|+.|++|++||+.+.+....        .......+.
T Consensus       248 -------------------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (388)
T d1erja_         248 -------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK  308 (388)
T ss_dssp             ----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred             -------------------ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeeccccc
Confidence                               01235788999999999999999999999999999986543211        011112234


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEE------cCCCCeEEEeecCCcEEEeCCC
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCF------SSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~f------spd~~~l~s~s~D~~i~vW~~~  421 (441)
                      .....+++++++.++++++. +.+++||+.+++++.++.+|.+.|.++++      +||+++|||||.|++|+||++.
T Consensus       309 ~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            45667889999998888765 68999999999999999999999999974      6799999999999999999863

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-37  Score=286.97  Aligned_cols=288  Identities=15%  Similarity=0.316  Sum_probs=228.5

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ++++.||.+.|++|+|+| ++++||||+.||+|+|||+.++...                 ....+|...|.++.|+| +
T Consensus        48 ~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~-----------------~~~~~~~~~v~~v~~~~-~  108 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKV-----------------HAIPLRSSWVMTCAYAP-S  108 (340)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEE-----------------EEEECSCSCEEEEEECT-T
T ss_pred             eEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeE-----------------EEEecccccEEeeEeec-c
Confidence            567889999999999997 5789999999999999999865421                 11237889999999987 7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeE----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~  191 (441)
                      +.++++|+.|+++++|+......    ...+.............   ....+.....+.....++..+.........+..
T Consensus       109 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (340)
T d1tbga_         109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE---ETTEEEEEETTTEEEEEETTTTEEEEEEECCSS
T ss_pred             ceeeeeecccceeecccccccccccccceecccccccccccccc---cccccccccccccccccccccccccccccccce
Confidence            88999999999999999765432    22222222222222221   123567778889999999988887777888889


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      .+....+.+.+. ++++++.|+.|++||++++++...+                                          
T Consensus       186 ~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~------------------------------------------  222 (340)
T d1tbga_         186 DVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTF------------------------------------------  222 (340)
T ss_dssp             CEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred             eEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEE------------------------------------------
Confidence            999999999876 5789999999999999876544332                                          


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  351 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~  351 (441)
                                                   .+|.++|++|+|+|++.+|++|+.|++|++||+........ + .......
T Consensus       223 -----------------------------~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~-~-~~~~~~~  271 (340)
T d1tbga_         223 -----------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-Y-SHDNIIC  271 (340)
T ss_dssp             -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-E-CCTTCCS
T ss_pred             -----------------------------eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccc-c-ccccccC
Confidence                                         24677899999999999999999999999999987643211 1 1111223


Q ss_pred             cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      ....+++++++.++++++. +.+++||+.+++.+.++.+|.++|++|+|+||+++|+|||.|++|+|||
T Consensus       272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            3557888999998888765 6899999999999999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.6e-36  Score=278.00  Aligned_cols=286  Identities=18%  Similarity=0.170  Sum_probs=223.9

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .+.+.+..|+++|+ ++.|+.++ ++.|.+||+.+....                 ....+|+..|.++.|+| ++++||
T Consensus        15 ~~r~~~~~~a~~~~-g~~l~~~~-~~~v~i~~~~~~~~~-----------------~~~~~H~~~v~~~~~sp-~g~~la   74 (311)
T d1nr0a1          15 TARGTAVVLGNTPA-GDKIQYCN-GTSVYTVPVGSLTDT-----------------EIYTEHSHQTTVAKTSP-SGYYCA   74 (311)
T ss_dssp             CCTTCCCCCEECTT-SSEEEEEE-TTEEEEEETTCSSCC-----------------EEECCCSSCEEEEEECT-TSSEEE
T ss_pred             CCCCCeEEEEEcCC-CCEEEEEe-CCEEEEEECCCCcee-----------------EEEcCCCCCEEEEEEeC-CCCeEe
Confidence            34567778899974 66777774 567999999765421                 12348999999999987 799999


Q ss_pred             EEeCCCcEEEEECCCCeEE--EEEe-cCCeeEEEeeccCCCCccEEEEEeC--CCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          121 TGSYDHYVKVWDTNCTRVV--MNFK-MPGKVYRTAMSPLAASHMLIAAGTE--DVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~las~s~--d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      +|+.|++|++||+.++...  ..+. +.+.+.++.|++++   .+|++++.  +..+++|++++++....+.+|...|.+
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~---~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES---KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS---CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             ccccCceEeeeeeeccccccccccccccCccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999887644  3333 35678889998854   36666664  456999999999999999999999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      ++|+|+++++|++|+.|+.|++||++++++...+                                              
T Consensus       152 v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~----------------------------------------------  185 (311)
T d1nr0a1         152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF----------------------------------------------  185 (311)
T ss_dssp             EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE----------------------------------------------
T ss_pred             ccccccceeeeccccccccccccccccccccccc----------------------------------------------
Confidence            9999999888899999999999999875433221                                              


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE----EeccC
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV----RLQTS  351 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~----~~~~~  351 (441)
                                               ..|..+|++++|+|++++|++++.|+.|++||+.++.... .+...    ..+..
T Consensus       186 -------------------------~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~~~h~~  239 (311)
T d1nr0a1         186 -------------------------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG-VFEDDSLKNVAHSG  239 (311)
T ss_dssp             -------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-ECBCTTSSSCSSSS
T ss_pred             -------------------------ccccccccccccCccccccccccccccccccccccccccc-cccccccccccccc
Confidence                                     2466789999999999999999999999999998765321 11110    01223


Q ss_pred             cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccccc-ceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-YVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~-~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      ....+++++++.++++++. +.+++||+.+++++.++..|.. ....+.+.+++.+|++++.||.|++||++
T Consensus       240 ~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            4567889999999888765 6799999999999999987754 23444555666789999999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-35  Score=278.66  Aligned_cols=302  Identities=16%  Similarity=0.188  Sum_probs=219.7

Q ss_pred             CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (441)
Q Consensus        43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg  122 (441)
                      ..+|+|++|+| ++++||+|+.||.|+|||+.+++..          .+     ....+|.++|.++.|+| ++++|+||
T Consensus         7 ~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~----------~~-----~~l~gH~~~V~~l~fsp-~~~~l~s~   69 (371)
T d1k8kc_           7 VEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWV----------QV-----HELKEHNGQVTGVDWAP-DSNRIVTC   69 (371)
T ss_dssp             SSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEE----------EE-----EEEECCSSCEEEEEEET-TTTEEEEE
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEE----------EE-----EEecCCCCCEEEEEECC-CCCEEEEE
Confidence            47899999997 6789999999999999998654310          11     12358999999999987 78899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce----eeeecCCCCCeEE
Q 013545          123 SYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI----SQTLSGHRDGIMT  195 (441)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~----~~~l~~h~~~v~~  195 (441)
                      +.|++|++||+.++........   ...+.++.++|++   ..|++++.|+.|++|+++....    .....+|...|.+
T Consensus        70 s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~---~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS---SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             ECCCeEEEEeeccccccccccccccccccccccccccc---ccceeecccCcceeeeeeccccccccccccccccccccc
Confidence            9999999999988776555443   4568888888854   4789999999999999877653    2345689999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      ++|+|+++ +|++|+.|++|++||+...........                           .....            
T Consensus       147 v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~---------------------------~~~~~------------  186 (371)
T d1k8kc_         147 LDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAP---------------------------TPWGS------------  186 (371)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCC---------------------------BTTBS------------
T ss_pred             cccccccc-ceeccccCcEEEEEeeccCcccccccc---------------------------ccccc------------
Confidence            99999987 579999999999999864321000000                           00000            


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  355 (441)
                        .          ...+  .......+|.+.|.+++|+|++++|++++.|++|++||+.+++..    .....+......
T Consensus       187 --~----------~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~s  248 (371)
T d1k8kc_         187 --K----------MPFG--ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV----ATLASETLPLLA  248 (371)
T ss_dssp             --C----------CCTT--CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE----EEEECSSCCEEE
T ss_pred             --c----------ccce--eeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce----eeeeccccccee
Confidence              0          0000  000112467888999999999999999999999999999887532    233334445567


Q ss_pred             EEeeCCCcEEEEeCCCceEEEEccC--CceEe---------------------------------------eecccccce
Q 013545          356 LATTQDPAVVFVPCMTAVKAFDIWS--GKTCL---------------------------------------TFRGHYEYV  394 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~wd~~~--~~~~~---------------------------------------~l~gh~~~v  394 (441)
                      +++++++.+++++....+++|....  ++...                                       ....|.+.|
T Consensus       249 ~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I  328 (371)
T d1k8kc_         249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV  328 (371)
T ss_dssp             EEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred             eeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCE
Confidence            8899999888877666666654322  11100                                       012489999


Q ss_pred             EEEEEcCCCC----eEEEeecCCcEEEeCCCC
Q 013545          395 NCCCFSSQDQ----ELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       395 ~~v~fspd~~----~l~s~s~D~~i~vW~~~~  422 (441)
                      +++++.|++.    .|+|+|.|+.|+||++.+
T Consensus       329 ~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         329 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             EEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             EEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            9999988653    488999999999999753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-34  Score=265.22  Aligned_cols=287  Identities=14%  Similarity=0.212  Sum_probs=209.7

Q ss_pred             ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ..+++.||.+.|++|+|+| ++++|+||+.||+|++||++++....                ....+|...|.++.++| 
T Consensus         4 ~~~~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~----------------~~~~~h~~~v~~v~~~~-   65 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNR----------------VFPDVHATMITGIKTTS-   65 (299)
T ss_dssp             EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE----------------CSSCSCSSCEEEEEECT-
T ss_pred             cceEcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEE----------------EEcCCCCCcEEEEEeec-
Confidence            3577899999999999997 57899999999999999998764210                11247899999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeE----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                      ++ .+++++.|+++++|+......    .....+...+..+.+++++   .+++++ .++.+++|+...  .....  ..
T Consensus        66 ~g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~~~~~-~~~~i~~~~~~~--~~~~~--~~  136 (299)
T d1nr0a2          66 KG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG---DIAVAA-CYKHIAIYSHGK--LTEVP--IS  136 (299)
T ss_dssp             TS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS---SCEEEE-ESSEEEEEETTE--EEEEE--CS
T ss_pred             cc-eeecccceeeEEEeccCCcccccccccccccccccccccccccc---cccccc-cccccccccccc--ccccc--cc
Confidence            55 467788999999999754321    1222344566777777754   244444 467899999543  33333  33


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      ..+.+++|+|+++ +|++|+.|+.|++||++++.....                                          
T Consensus       137 ~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~------------------------------------------  173 (299)
T d1nr0a2         137 YNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEV------------------------------------------  173 (299)
T ss_dssp             SCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEE------------------------------------------
T ss_pred             ccccccccccccc-cccccccccccccccccccccccc------------------------------------------
Confidence            4578999999987 578999999999999876432211                                          


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                  ....|..+|++++|+|++.+|++++.|++|++||+.++.... .......+.
T Consensus       174 ----------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~h~  224 (299)
T d1nr0a2         174 ----------------------------KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA-HTNSWTFHT  224 (299)
T ss_dssp             ----------------------------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES-CCCCCCCCS
T ss_pred             ----------------------------cccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence                                        013567789999999999999999999999999998765321 111222234


Q ss_pred             CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceE--eeecccc-cceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545          351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTC--LTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS  421 (441)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~--~~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW~~~  421 (441)
                      .....+++++++.++++++. +.+++||+.++...  ....+|. ..|.++. ++++++|+|||.|++||+|+++
T Consensus       225 ~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred             cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence            45567889999999888765 78999999876543  3333444 5566665 5667899999999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-34  Score=267.18  Aligned_cols=282  Identities=20%  Similarity=0.303  Sum_probs=209.2

Q ss_pred             eeeecCCCCce-eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           36 KEIVSPHKGSI-NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        36 ~~~~~~H~~~V-~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      +..+.||.+.| +|++|+   +++||||+.||+|+|||+.+++..                 ....+|+++|.+++|++ 
T Consensus         5 ~~tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~-----------------~~l~~H~~~V~~l~~s~-   63 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFL-----------------LQLSGHDGGVWALKYAH-   63 (355)
T ss_dssp             EEEEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTTEEE-----------------EEEECCSSCEEEEEEET-
T ss_pred             cEEECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCcEE-----------------EEEECCCCCEEEEEEcC-
Confidence            34578998875 677764   569999999999999999865421                 12348999999999975 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCee---EEEeeccC-----------------------------------
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV---YRTAMSPL-----------------------------------  156 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~-----------------------------------  156 (441)
                       +++|+||+.|++|++|+................   ......+.                                   
T Consensus        64 -~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  142 (355)
T d1nexb2          64 -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  142 (355)
T ss_dssp             -TTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE
T ss_pred             -CCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecc
Confidence             459999999999999999877654433221110   00000000                                   


Q ss_pred             -------------------------CCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeec
Q 013545          157 -------------------------AASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC  211 (441)
Q Consensus       157 -------------------------~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~  211 (441)
                                               .....+++.+..|+.|++||+.+++.+..+.++...+.++.|+|+++ .+++++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  221 (355)
T d1nexb2         143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASM  221 (355)
T ss_dssp             EESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEET
T ss_pred             ceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce-eeecccc
Confidence                                     00123566677777788888888777777888889999999999987 4789999


Q ss_pred             CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545          212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP  291 (441)
Q Consensus       212 Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (441)
                      |++|++||++++.+...+                                                              
T Consensus       222 d~~i~i~d~~~~~~~~~~--------------------------------------------------------------  239 (355)
T d1nexb2         222 DTTIRIWDLENGELMYTL--------------------------------------------------------------  239 (355)
T ss_dssp             TSCEEEEETTTCCEEEEE--------------------------------------------------------------
T ss_pred             cceEEeeecccccccccc--------------------------------------------------------------
Confidence            999999999876443322                                                              


Q ss_pred             CcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce-EEEeeCCCcEEEEeCC
Q 013545          292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI-QLATTQDPAVVFVPCM  370 (441)
Q Consensus       292 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  370 (441)
                               .+|...|.++++++  ++|++|+.|++|++||+.+.....      ..+..... ...+.+++.+++++..
T Consensus       240 ---------~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~g~d  302 (355)
T d1nexb2         240 ---------QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF------SYHHTNLSAITTFYVSDNILVSGSE  302 (355)
T ss_dssp             ---------CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE------EEECTTCCCCCEEEECSSEEEEEET
T ss_pred             ---------cccccccccccccc--ceeeeeecccccccccccccceec------ccccCCceEEEEEcCCCCEEEEEeC
Confidence                     35677888888864  699999999999999998765322      12222222 2345677888887777


Q ss_pred             CceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          371 TAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       371 ~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      +.+++||+.+++++. .+.+|.++|++|+|+|+ ..+++++.||+++||.+
T Consensus       303 ~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            899999999999885 67899999999999997 57888999999877754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=256.70  Aligned_cols=286  Identities=19%  Similarity=0.321  Sum_probs=203.1

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      ..++.||.+.|.+ ++++ ++++|||||.||+|+|||+.+++..                 ....+|+..|.++.+.+  
T Consensus         9 ~~~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~-----------------~~~~~h~~~V~~v~~~~--   67 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCL-----------------RTLVGHTGGVWSSQMRD--   67 (342)
T ss_dssp             CEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEE-----------------EECCCCSSCEEEEEEET--
T ss_pred             CEEECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEE-----------------EEEeCCCCCEEEEEeCC--
Confidence            4678899998864 2443 3679999999999999999876421                 22458999999998864  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEe----------------------------ecc-------CCCC
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTA----------------------------MSP-------LAAS  159 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~----------------------------~~~-------~~~~  159 (441)
                       ++|+||+.|+++++|+............... +....                            +..       ....
T Consensus        68 -~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
T d2ovrb2          68 -NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD  146 (342)
T ss_dssp             -TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC
T ss_pred             -CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc
Confidence             4999999999999999876654433221110 00000                            000       0011


Q ss_pred             ccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC
Q 013545          160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR  239 (441)
Q Consensus       160 ~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~  239 (441)
                      ...++.++.|+.|++||+..++.+..+.+|...+....+  ++. .+++++.||+|++||++.++++..+          
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d~~~~~~~~~~----------  213 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTL----------  213 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEE----------
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCC-EEEEEeCCCeEEEeecccceeeeEe----------
Confidence            235677788888999998888888888888877776655  444 4688889999999988765443221          


Q ss_pred             CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545          240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  319 (441)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  319 (441)
                                                                                   .+|...+.+++++  +.+|
T Consensus       214 -------------------------------------------------------------~~~~~~v~~~~~~--~~~l  230 (342)
T d2ovrb2         214 -------------------------------------------------------------TGHQSLTSGMELK--DNIL  230 (342)
T ss_dssp             -------------------------------------------------------------CCCCSCEEEEEEE--TTEE
T ss_pred             -------------------------------------------------------------cccccceeEEecC--CCEE
Confidence                                                                         2455667777665  4699


Q ss_pred             EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee-----cccccc
Q 013545          320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-----RGHYEY  393 (441)
Q Consensus       320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l-----~gh~~~  393 (441)
                      ++|+.|++|++||+...+.... +..  .........++.+++..+++++. +.+++||+.+++.+.++     .+|.+.
T Consensus       231 ~s~s~d~~i~iwd~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~  307 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKTGQCLQT-LQG--PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV  307 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEE-ECS--TTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred             EEEcCCCEEEEEeccccccccc-ccc--cceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCC
Confidence            9999999999999987653211 111  01112223344556677777654 68999999999988876     378889


Q ss_pred             eEEEEEcCCCCeEEEeecCCc----EEEeCCCC
Q 013545          394 VNCCCFSSQDQELYTGGNDRQ----ILVWCPSR  422 (441)
Q Consensus       394 v~~v~fspd~~~l~s~s~D~~----i~vW~~~~  422 (441)
                      |++++|+|++.+|++|+.||+    |++||.+.
T Consensus       308 v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999999999997    99999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-32  Score=255.41  Aligned_cols=258  Identities=17%  Similarity=0.233  Sum_probs=198.9

Q ss_pred             cceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545           34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (441)
Q Consensus        34 ~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~  113 (441)
                      ....++.+|.+.|++++|+| ++++||||+.||+|+|||+.+....            +.   ....+|..+|.++.|++
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~------------~~---~~~~~~~~~v~~v~~s~  112 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHI------------LK---TTIPVFSGPVKDISWDS  112 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCC------------EE---EEEECSSSCEEEEEECT
T ss_pred             ceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccc------------cc---cccccccCccccccccc
Confidence            34567789999999999997 5889999999999999999765421            00   11247889999999987


Q ss_pred             CCCCEEEEEeC--CCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545          114 VDTGLFVTGSY--DHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (441)
Q Consensus       114 ~~~~~l~sgs~--D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~  190 (441)
                       ++.+|++++.  |..+++|+..+++...++.. .+.+.++.++|..  ..+|++|+.|+.|++||+++++....+.+|.
T Consensus       113 -d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~--~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~  189 (311)
T d1nr0a1         113 -ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR--PFRIISGSDDNTVAIFEGPPFKFKSTFGEHT  189 (311)
T ss_dssp             -TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS--SCEEEEEETTSCEEEEETTTBEEEEEECCCS
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccc--eeeeccccccccccccccccccccccccccc
Confidence             7889998886  56699999998887766553 4568888888754  3578899999999999999999999999999


Q ss_pred             CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG  270 (441)
Q Consensus       191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (441)
                      ..|.++.|+|+++ ++++++.|+.|++||++.+.....++..                                      
T Consensus       190 ~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~--------------------------------------  230 (311)
T d1nr0a1         190 KFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDD--------------------------------------  230 (311)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCT--------------------------------------
T ss_pred             ccccccccCcccc-cccccccccccccccccccccccccccc--------------------------------------
Confidence            9999999999987 5789999999999999876544333210                                      


Q ss_pred             ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545          271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  350 (441)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~  350 (441)
                                                .....+|.++|++|+|+|++++|++|+.|++|+|||+++++..    ..+....
T Consensus       231 --------------------------~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~----~~l~~~~  280 (311)
T d1nr0a1         231 --------------------------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE----KTIPVGT  280 (311)
T ss_dssp             --------------------------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECCS
T ss_pred             --------------------------ccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEE----EEEECCC
Confidence                                      0012468889999999999999999999999999999987532    2222222


Q ss_pred             C-cceEEEeeCCCcEEEEe-CCCceEEEEcc
Q 013545          351 S-KPIQLATTQDPAVVFVP-CMTAVKAFDIW  379 (441)
Q Consensus       351 ~-~~~~~~~~~~~~~~~~~-~~~~~~~wd~~  379 (441)
                      . ....+.+.+++..++++ ..+.+++||++
T Consensus       281 ~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         281 RIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            1 12233444555556555 45789999963

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=264.98  Aligned_cols=281  Identities=14%  Similarity=0.153  Sum_probs=187.0

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccce------eEEE
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI------SSAI  110 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V------~~~~  110 (441)
                      .+..+|.+.|+++++++   ++|+|||.|++|+|||..+......      .......     ..|+..+      ..+.
T Consensus         8 ~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~   73 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSH-----FVHKSGLHHVDVLQAIE   73 (393)
T ss_dssp             EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEE-----ECCTTCEEEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcc------cceeEee-----eeccCCceEeeeEeeec
Confidence            34579999999999862   5899999999999999865442110      0001100     1222222      1122


Q ss_pred             EeeCCCCEEEEEeCCCcEEEEECCCCeE---EE--EEec------CCeeEEEeeccCC--CCccEEEEEeCCCcEEEEEC
Q 013545          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRV---VM--NFKM------PGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus       111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~---~~--~~~~------~~~~~~~~~~~~~--~~~~~las~s~d~~I~vwdl  177 (441)
                      ..+.+..++++++.|++|++|++.....   ..  ....      ......+.+.+..  ....++++++.|+.|++|++
T Consensus        74 ~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~  153 (393)
T d1sq9a_          74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  153 (393)
T ss_dssp             TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             cCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEe
Confidence            1222234788999999999998653321   11  1111      1234444554432  22457888999999999998


Q ss_pred             CCCc------------------eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC
Q 013545          178 ASGA------------------ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR  239 (441)
Q Consensus       178 ~~~~------------------~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~  239 (441)
                      ....                  .......+...+.+++|+|++  +|++|+.||+|++||+++++++..++..       
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~-------  224 (393)
T d1sq9a_         154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQ-------  224 (393)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECC-------
T ss_pred             ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccc-------
Confidence            5321                  011223456678999999986  5799999999999999987665544221       


Q ss_pred             CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545          240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  319 (441)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  319 (441)
                                                                                ....+|..+|++|+|+|||++|
T Consensus       225 ----------------------------------------------------------~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         225 ----------------------------------------------------------HSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             ----------------------------------------------------------C---CCCCCEEEEEECSSTTEE
T ss_pred             ----------------------------------------------------------cccccccceEEEccccccccee
Confidence                                                                      0134688899999999999999


Q ss_pred             EEeecCCc---EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEE
Q 013545          320 LSAGSDSR---IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNC  396 (441)
Q Consensus       320 ~sgs~D~~---i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~  396 (441)
                      ++|+.|++   |++||+.+++...    .+....                            ........+.||.+.|++
T Consensus       247 ~sgs~D~t~~~i~lwd~~~g~~~~----~l~~~~----------------------------~~~~~~~~~~gH~~~V~~  294 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEFGERIG----SLSVPT----------------------------HSSQASLGEFAHSSWVMS  294 (393)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEE----EECBC------------------------------------CCBSBSSCEEE
T ss_pred             eeecCCCCcceeeecccccceeee----eecccc----------------------------ccccceeeeecccCceee
Confidence            99999985   8999999876321    110000                            011233566899999999


Q ss_pred             EEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545          397 CCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       397 v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~  430 (441)
                      |+|+||+++|+|||.|++|||||+.++....+..
T Consensus       295 l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            9999999999999999999999999887555443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-31  Score=238.27  Aligned_cols=270  Identities=22%  Similarity=0.367  Sum_probs=201.7

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +..|...|+|++|+   +++|||||.||+|+|||+.+++..                 ....+|+..|.++.+   ++.+
T Consensus        11 ~~~~~~~V~c~~~d---~~~l~sgs~Dg~i~vWd~~~~~~~-----------------~~l~~H~~~V~~v~~---~~~~   67 (293)
T d1p22a2          11 RSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECK-----------------RILTGHTGSVLCLQY---DERV   67 (293)
T ss_dssp             CCSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEE-----------------EEECCCSSCEEEEEC---CSSE
T ss_pred             cCCCCCCEEEEEEc---CCEEEEEeCCCeEEEEECCCCcEE-----------------EEEecCCCCEeeeec---ccce
Confidence            45788999998773   679999999999999999765421                 123589999998876   5679


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce---eeeecCCCCCeEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSGHRDGIMT  195 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~---~~~l~~h~~~v~~  195 (441)
                      |+||+.|++|++|++..+............... ...   ....++++..++.+.+||+.+...   ...+..|...|.+
T Consensus        68 l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  143 (293)
T d1p22a2          68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH-LRF---NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  143 (293)
T ss_dssp             EEEEETTSCEEEEESSSCCEEEEECCCCSCEEE-EEC---CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             eeccccccccccccccccccccccccccccccc-ccc---cccceeecccccceeEeecccccccccccccccccccccc
Confidence            999999999999999988877665544332222 222   123678888999999999987653   4456789999999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      +.+.+.   .+++++.|+.|++||+++++++..+                                              
T Consensus       144 ~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~----------------------------------------------  174 (293)
T d1p22a2         144 VDFDDK---YIVSASGDRTIKVWNTSTCEFVRTL----------------------------------------------  174 (293)
T ss_dssp             EEEETT---EEEEEETTSEEEEEETTTCCEEEEE----------------------------------------------
T ss_pred             ceeccc---ccccccCCCceeeecCCCCcEEEEE----------------------------------------------
Confidence            888764   4678999999999999876544332                                              


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  355 (441)
                                               .+|...+..+.+  ++.++++++.|++|++||+.+.+...    .  ........
T Consensus       175 -------------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~----~--~~~~~~~v  221 (293)
T d1p22a2         175 -------------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR----V--LEGHEELV  221 (293)
T ss_dssp             -------------------------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE----E--ECCCSSCE
T ss_pred             -------------------------cccccccccccC--CCCeEEEecCCCEEEEEecccceeee----e--ecccceee
Confidence                                     123344665555  46789999999999999998865321    1  11122223


Q ss_pred             EEeeCCCcEEEEeCC-CceEEEEccC---------CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545          356 LATTQDPAVVFVPCM-TAVKAFDIWS---------GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  419 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~wd~~~---------~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~  419 (441)
                      ....+++..+++++. +.+++||+.+         ...+.++.+|.++|++|+|+  +++|+|||.|++|+|||
T Consensus       222 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            345667777776654 7899999743         34678899999999999984  67899999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-32  Score=251.69  Aligned_cols=286  Identities=15%  Similarity=0.155  Sum_probs=204.0

Q ss_pred             CceeEEEccCCCCcEEEEeeCCCc-EEEEECCCCcccCCCCceeccceeEEeecccccCc-ccceeEEEEeeC-CCCEEE
Q 013545           44 GSINSLQVDLTEERYLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH-KYAISSAIWYPV-DTGLFV  120 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~~~-~~~~l~  120 (441)
                      +.+++|+|+|. ++.|+.++.+.. |+.||.......          .+     ....+| ...|+++.|+|. ++.+|+
T Consensus        18 ~~~t~l~~~~~-~~~la~~~~~~~~i~~~~~~~~~~~----------~~-----~~~~gh~~~~v~~v~fsP~~~g~~la   81 (325)
T d1pgua1          18 NFTTHLSYDPT-TNAIAYPCGKSAFVRCLDDGDSKVP----------PV-----VQFTGHGSSVVTTVKFSPIKGSQYLC   81 (325)
T ss_dssp             TCCCCCEEETT-TTEEEEEETTEEEEEECCSSCCSSC----------SE-----EEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred             CCeEEEEECCC-CCEEEEEeCCCEEEEEEeCCCCCcc----------ce-----EEEeCCCCCCEEEEEEeeCCCCCEEE
Confidence            46789999975 667877766543 667765433211          01     112366 467999999874 678999


Q ss_pred             EEeCCCcEEEEECCCCeEEE--------EE-ecCCeeEEEeeccCCCCccEEEEE--eCCCcEEEEECCCCceeeeecCC
Q 013545          121 TGSYDHYVKVWDTNCTRVVM--------NF-KMPGKVYRTAMSPLAASHMLIAAG--TEDVQVRLCDIASGAISQTLSGH  189 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~las~--s~d~~I~vwdl~~~~~~~~l~~h  189 (441)
                      ||+.|++|+|||+..+....        .+ .+.+++..+.+++++.   .++++  +.++.+++|+.++++++..+.+|
T Consensus        82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h  158 (325)
T d1pgua1          82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR---RLCVVGEGRDNFGVFISWDSGNSLGEVSGH  158 (325)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS---EEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred             EEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC---ccceeeccccceEEEEeecccccceeeeec
Confidence            99999999999986543211        11 1346688888887543   44443  34778999999999999999999


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ...|.+++|+|+++.++++++.|+.|++||++..+....+.                                       
T Consensus       159 ~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~---------------------------------------  199 (325)
T d1pgua1         159 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---------------------------------------  199 (325)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---------------------------------------
T ss_pred             ccccccccccccccceEEEeecccccccccccccccceecc---------------------------------------
Confidence            99999999999998878899999999999987643222110                                       


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  348 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~  348 (441)
                                                   ....|...|++++|+|+ +.+|++++.|++|++||+++++..    ..+..
T Consensus       200 -----------------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~  246 (325)
T d1pgua1         200 -----------------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL----KYIED  246 (325)
T ss_dssp             -----------------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE----EECCB
T ss_pred             -----------------------------cccCCCCccEEeeeccccceeccccccccceeeeeecccccc----ccccc
Confidence                                         01246678999999997 688999999999999999887632    12222


Q ss_pred             ccCcce--EEE-eeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc--eEEEEEcCC-CCeEEEeecCCcEEEeCC
Q 013545          349 QTSKPI--QLA-TTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSSQ-DQELYTGGNDRQILVWCP  420 (441)
Q Consensus       349 ~~~~~~--~~~-~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~--v~~v~fspd-~~~l~s~s~D~~i~vW~~  420 (441)
                      +.....  ..+ ..+++.++++++. +.+++||+.+++++.++..|...  +..++|.+. +.+|+|||.|++|++|++
T Consensus       247 ~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            222221  122 2267777777654 78999999999999887766654  444455443 358999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-31  Score=244.69  Aligned_cols=269  Identities=17%  Similarity=0.167  Sum_probs=194.6

Q ss_pred             eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      .+++.||.+.|++|+|+|     |+|||.||+|++||+.++.                      .+|+..|.++.+.+  
T Consensus         6 i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~----------------------~~h~~~V~~~~~~~--   56 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH----------------------QDHSNLIVSLDNSK--   56 (287)
T ss_dssp             EEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE----------------------CCCCSCEEEEECCS--
T ss_pred             eEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC----------------------CCCCCCEEEEEecC--
Confidence            456789999999999985     9999999999999986421                      36888999888764  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~  195 (441)
                      +..++|++.|++|++|++...      .+...+..+.+.+.   ..+++ ...+..+.+|+..+++.+..+..+. .  .
T Consensus        57 ~~~~~s~s~D~~v~~w~~~~~------~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~--~  123 (287)
T d1pgua2          57 AQEYSSISWDDTLKVNGITKH------EFGSQPKVASANND---GFTAV-LTNDDDLLILQSFTGDIIKSVRLNS-P--G  123 (287)
T ss_dssp             TTCCEEEETTTEEEETTEEEE------ECSSCEEEEEECSS---SEEEE-EETTSEEEEEETTTCCEEEEEECSS-C--E
T ss_pred             CCeEEEEeecccccccccccc------ccccceeeeeeccC---CceEE-Eeecccceeeeccceeeeeeccccc-e--e
Confidence            457899999999999986432      23334444555543   23444 4556789999999998887776443 3  3


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      .+++|+++.+++++..++.|++|++........+                                              
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~----------------------------------------------  157 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL----------------------------------------------  157 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC----------------------------------------------
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeee----------------------------------------------
Confidence            4567777755444444468999998643211100                                              


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  355 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  355 (441)
                                              ...|.+++++|+|+|++.+|++|+.|+.|++||+.+++....   ....+......
T Consensus       158 ------------------------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~~h~~~v~~  210 (287)
T d1pgua2         158 ------------------------KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFRTSKINA  210 (287)
T ss_dssp             ------------------------SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCCSSCEEE
T ss_pred             ------------------------eeccCCceeEEEeccCccccccccccccccceeecccccccc---cccccccccce
Confidence                                    112456799999999999999999999999999987653211   11112233344


Q ss_pred             EEeeC----------CCcEEEEeCC-CceEEEEccC-CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545          356 LATTQ----------DPAVVFVPCM-TAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  420 (441)
Q Consensus       356 ~~~~~----------~~~~~~~~~~-~~~~~wd~~~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~  420 (441)
                      ++++|          ++.++++++. ..+++||+.+ ++.+..+.+|.+.|++++|+|++ .|+|+|.|++||+|++
T Consensus       211 ~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            44443          4556666654 6899999976 56778889999999999999986 6899999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-30  Score=238.29  Aligned_cols=252  Identities=20%  Similarity=0.348  Sum_probs=204.6

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      +.||+++|.+++|+| ++++|||||.|++|+|||+.+++++..+.. .+.+..+.+++..   .+++++..++.+.+|+.
T Consensus        13 L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG---KLLASCSADMTIKLWDF   88 (317)
T ss_dssp             EECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS---SEEEEEETTSCCCEEET
T ss_pred             EcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccc---ccccccccccccccccc
Confidence            468999999999987 788999999999999999999998888774 5668888888753   57889999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ...+....+.+|...+.++.|+|+++. +++++.|+.+++||++++.....+                            
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~----------------------------  139 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF----------------------------  139 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE----------------------------
T ss_pred             cccccccccccccccceeeeccCCCce-EEeeccCcceeEeecccceeeeEE----------------------------
Confidence            999988889999999999999999884 789999999999999876543322                            


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                 .+|...+.+++|+|++.+|++++.|+.|++|++.+++
T Consensus       140 -------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~  176 (317)
T d1vyhc1         140 -------------------------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE  176 (317)
T ss_dssp             -------------------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             -------------------------------------------ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce
Confidence                                                       2456678999999999999999999999999998765


Q ss_pred             ceeeeeeeEEeccCcceEEEe--------------------eCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEE
Q 013545          338 NTLVNFETVRLQTSKPIQLAT--------------------TQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNC  396 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~  396 (441)
                      ....    ..........+.+                    ...+..+++++ .+.+++|++.+++++.++.+|..+|.+
T Consensus       177 ~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~  252 (317)
T d1vyhc1         177 CKAE----LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  252 (317)
T ss_dssp             EEEE----ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             eeEE----EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence            3211    1111111122222                    22334444443 468999999999999999999999999


Q ss_pred             EEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545          397 CCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       397 v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~  430 (441)
                      ++|+|++++|++|+.|++|++|++.+++......
T Consensus       253 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  286 (317)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Confidence            9999999999999999999999999887655443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-30  Score=242.32  Aligned_cols=243  Identities=20%  Similarity=0.277  Sum_probs=198.1

Q ss_pred             CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE---EEEE---ecCCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV---VMNF---KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus       101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~las~s~d~~I~v  174 (441)
                      +|...|.+++|++ ++.+||||+ |++|+|||+.++..   +...   .+.+.+.+++++|++   .+|++|+.|+.|++
T Consensus        49 ~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg---~~l~s~~~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS---SEEEEEESSSEEEE
T ss_pred             CCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC---CEEEEeeccccccc
Confidence            6999999999987 789999987 89999999876432   2222   234668899999864   47899999999999


Q ss_pred             EECCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          175 CDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       175 wdl~~~--~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      ||+...  +....+.+|...+.++.|+|++. ++++++.|+.|++||++++++...                        
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~------------------------  178 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQ------------------------  178 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE------------------------
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc------------------------
Confidence            998754  45677889999999999999987 578999999999999987543321                        


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  332 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd  332 (441)
                                                                     ..+|...|++++|++++.++++++.|++|++||
T Consensus       179 -----------------------------------------------~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d  211 (337)
T d1gxra_         179 -----------------------------------------------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             -----------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             -----------------------------------------------ccccccccccccccccccccccccccccccccc
Confidence                                                           124667899999999999999999999999999


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  411 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~  411 (441)
                      +++++..    ... .....+..+++.+++..+++++. +.+++||+.+++.. ...+|...|++++|+|++++|+||+.
T Consensus       212 ~~~~~~~----~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         212 LREGRQL----QQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             TTTTEEE----EEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccceee----ccc-ccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeC
Confidence            9887532    111 12345567888999988887655 68999999888765 55789999999999999999999999


Q ss_pred             CCcEEEeCCCCCCCC
Q 013545          412 DRQILVWCPSRHISD  426 (441)
Q Consensus       412 D~~i~vW~~~~~~~~  426 (441)
                      |++|++|+..++...
T Consensus       286 Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         286 DNLLNAWRTPYGASI  300 (337)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCCEE
Confidence            999999999877643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-29  Score=241.77  Aligned_cols=280  Identities=22%  Similarity=0.362  Sum_probs=210.9

Q ss_pred             EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE
Q 013545           59 LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV  138 (441)
Q Consensus        59 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~  138 (441)
                      .+.+..++...+|+......+.             .......+|++.|++++|+| ||.+||||+ |++|+|||+.+++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~   95 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREID-------------VELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSL   95 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEE-------------EEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCE
T ss_pred             ccccCCCCcEEEeCCCCCccee-------------eeeEeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccce
Confidence            5678889999999975443211             01111236999999999987 789999986 89999999999887


Q ss_pred             EEEEec-------------------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545          139 VMNFKM-------------------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       139 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs  199 (441)
                      +..+..                   ...+.++++++++   .+|++|+.|+.|++||..+++.+..+.+|...|.++.|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~---~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~  172 (388)
T d1erja_          96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG---KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF  172 (388)
T ss_dssp             EEEECC-----------------CCCCBEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EeeecccccccccccccccccccCCCCCEEEEEECCCC---Ccceecccccccccccccccccccccccccccccccccc
Confidence            766532                   2336778888753   589999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      +++. .+++++.++.|++||+++..+....                                                  
T Consensus       173 ~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------------------  201 (388)
T d1erja_         173 PSGD-KLVSGSGDRTVRIWDLRTGQCSLTL--------------------------------------------------  201 (388)
T ss_dssp             TTSS-EEEEEETTSEEEEEETTTTEEEEEE--------------------------------------------------
T ss_pred             cccc-cccccccceeeeeeecccccccccc--------------------------------------------------
Confidence            9987 5689999999999998865332211                                                  


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEc-cCCCEEEEeecCCcEEEeeCCCCCceeeeee---eEEeccCcceE
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGSDSRIRLWDVESGRNTLVNFE---TVRLQTSKPIQ  355 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~  355 (441)
                                            .+......+.++ +++.+|++|+.|+.|++||+.++........   ....+......
T Consensus       202 ----------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~  259 (388)
T d1erja_         202 ----------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  259 (388)
T ss_dssp             ----------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             ----------------------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEE
Confidence                                  111223344454 5789999999999999999998764221100   01112344567


Q ss_pred             EEeeCCCcEEEEeCC-CceEEEEccCCc------------eEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545          356 LATTQDPAVVFVPCM-TAVKAFDIWSGK------------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~------------~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~  422 (441)
                      +++++++..+++++. +.+++||+.++.            .......|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus       260 l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~  339 (388)
T d1erja_         260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  339 (388)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            889999998887755 789999986543            3456678999999999999999999999999999999998


Q ss_pred             CCCCCcc
Q 013545          423 HISDGVD  429 (441)
Q Consensus       423 ~~~~~~~  429 (441)
                      ++.....
T Consensus       340 ~~~~~~l  346 (388)
T d1erja_         340 GNPLLML  346 (388)
T ss_dssp             CCEEEEE
T ss_pred             CcEEEEE
Confidence            8765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=9e-30  Score=242.42  Aligned_cols=247  Identities=12%  Similarity=0.098  Sum_probs=192.2

Q ss_pred             ccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE--EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV--VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (441)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~  179 (441)
                      ..+|+|++|+| ++.+||+|+.|+.|+|||+.+++.  +..++ +.+.+.++.|+|+.   .+|++|+.|+.|++||+++
T Consensus         7 ~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~---~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS---NRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT---TEEEEEETTSCEEEEEEET
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC---CEEEEEECCCeEEEEeecc
Confidence            35799999987 889999999999999999987764  34443 45779999999854   4899999999999999988


Q ss_pred             Cce--eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          180 GAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       180 ~~~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      +..  ...+.+|...|.++.|+|+++ .|++++.|++|++|++..........                           
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~---------------------------  134 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCK---------------------------  134 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEE---------------------------
T ss_pred             cccccccccccccccccccccccccc-cceeecccCcceeeeeeccccccccc---------------------------
Confidence            764  345678999999999999987 57899999999999986532111100                           


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                              .....|.+.|.+++|+|++++|++|+.|++|++||+....
T Consensus       135 ----------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~  174 (371)
T d1k8kc_         135 ----------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE  174 (371)
T ss_dssp             ----------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred             ----------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccCc
Confidence                                                    0012466789999999999999999999999999987543


Q ss_pred             cee--------------eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCC
Q 013545          338 NTL--------------VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       338 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd  402 (441)
                      ...              ........+......+++++++..+++++. +.+++||+.+++.+.++.+|..+|.+|+|+||
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d  254 (371)
T d1k8kc_         175 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE  254 (371)
T ss_dssp             TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET
T ss_pred             cccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCC
Confidence            110              001111122334567889999998887765 68999999999999999999999999999999


Q ss_pred             CCeEEEeecCCcEEEeCCCC
Q 013545          403 DQELYTGGNDRQILVWCPSR  422 (441)
Q Consensus       403 ~~~l~s~s~D~~i~vW~~~~  422 (441)
                      +++|++|+ |+.+++|....
T Consensus       255 ~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         255 SSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             TEEEEEET-TSSCEEEEEET
T ss_pred             CCEEEEEc-CCceEEEEeeC
Confidence            98887655 77777776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=7.5e-29  Score=228.03  Aligned_cols=245  Identities=13%  Similarity=0.190  Sum_probs=189.9

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw  175 (441)
                      ...||+.+|.+++|+| ++.+||||+.|++|++||+++++.+..+.  +.+.+.++.+++++   . +++++.|+.+++|
T Consensus         7 ~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g---~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           7 VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG---D-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS---C-EEEEETTTEEEEE
T ss_pred             EcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc---e-eecccceeeEEEe
Confidence            4569999999999987 78999999999999999999998877664  34568888888854   2 4566779999999


Q ss_pred             ECCCCce---eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          176 DIASGAI---SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       176 dl~~~~~---~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      ++.....   ......|...+.+++|+|+++. ++ ++.++.+++|+....  ...                        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-~~-~~~~~~i~~~~~~~~--~~~------------------------  133 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDI-AV-AACYKHIAIYSHGKL--TEV------------------------  133 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSC-EE-EEESSEEEEEETTEE--EEE------------------------
T ss_pred             ccCCcccccccccccccccccccccccccccc-cc-ccccccccccccccc--ccc------------------------
Confidence            9876432   2234467888999999999874 34 456789999985421  000                        


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  332 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd  332 (441)
                                                                       .....+.+++|+|++++|++|+.|+.|++||
T Consensus       134 -------------------------------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2         134 -------------------------------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             -------------------------------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             -------------------------------------------------ccccccccccccccccccccccccccccccc
Confidence                                                             0112367899999999999999999999999


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceE---eeecccccceEEEEEcCCCCeEEE
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTC---LTFRGHYEYVNCCCFSSQDQELYT  408 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~---~~l~gh~~~v~~v~fspd~~~l~s  408 (441)
                      +++++...  . ....+...+..+++++++..+++++. +.+++||+.++...   ..+.+|..+|.+++|+|++++|++
T Consensus       165 ~~~~~~~~--~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         165 LSGASVSE--V-KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             EETTEEEE--E-EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccc--c-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEE
Confidence            98764221  1 11223455667888999988887655 68999999887654   467889999999999999999999


Q ss_pred             eecCCcEEEeCCCCCCCCC
Q 013545          409 GGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       409 ~s~D~~i~vW~~~~~~~~~  427 (441)
                      |+.|++|++|++.++....
T Consensus       242 gs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         242 GSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             EETTSCEEEEETTCTTSCC
T ss_pred             EcCCCEEEEEECCCCCcce
Confidence            9999999999998765443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.2e-29  Score=229.81  Aligned_cols=298  Identities=10%  Similarity=0.044  Sum_probs=205.8

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ++..+|.+.|++|+|+| ++++|||||.||+|+|||+.+....          ..+    ....+|..+|.+++|++.++
T Consensus         5 ~~~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~----------~~~----~~~~~h~~~V~~v~f~~~~~   69 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN----------VDL----LQSLRYKHPLLCCNFIDNTD   69 (342)
T ss_dssp             ECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE----------EEE----EEEEECSSCEEEEEEEESSS
T ss_pred             EcCCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcc----------eEE----EEecCCCCCEEEEEEeCCCC
Confidence            45679999999999997 5789999999999999998754321          001    11226899999999998767


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCC-ee-EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee----eecCC-
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ----TLSGH-  189 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~----~l~~h-  189 (441)
                      .+|+||+.|++|++|++............. .. ......+   +...+++++.++.+++||++++....    ....+ 
T Consensus        70 ~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~  146 (342)
T d1yfqa_          70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY---GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE---TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             CEEEEcccccceeeeeccccccccccccccccccccccccc---ccccccccccccccceeeccccccceeeeccccccc
Confidence            789999999999999998777655444322 11 2222222   23578889999999999987654322    22222 


Q ss_pred             -CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          190 -RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       190 -~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                       ........+.+.+. .+++++.|+.|++||++..........                                     
T Consensus       147 ~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~-------------------------------------  188 (342)
T d1yfqa_         147 TKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIE-------------------------------------  188 (342)
T ss_dssp             SSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEE-------------------------------------
T ss_pred             ccceeeeeeeeccCC-ceeeecCCCcEEEEecccCcccceeee-------------------------------------
Confidence             22334566677766 578999999999999875422110000                                     


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE-EccCCCEEEEeecCCcEEEeeCCCCCcee-----ee
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK-VTEDGMYLLSAGSDSRIRLWDVESGRNTL-----VN  342 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~sgs~D~~i~~wd~~~~~~~~-----~~  342 (441)
                                                     ...+...+.+.. +.+++..+++++.|+++.+|++.......     ..
T Consensus       189 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~  237 (342)
T d1yfqa_         189 -------------------------------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             -------------------------------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             -------------------------------ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence                                           001112233444 45567899999999999999987542211     00


Q ss_pred             eeeEE------eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcE
Q 013545          343 FETVR------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI  415 (441)
Q Consensus       343 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i  415 (441)
                      +....      .+......++++|++.++++++. +.+++||+.+++.+.++..|. .+..++|+|++++|++|+.|.++
T Consensus       238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~  316 (342)
T d1yfqa_         238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF  316 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHH
T ss_pred             eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcE
Confidence            10000      11122346889999998888765 689999999999999887543 45678899999999999999999


Q ss_pred             EEeCCCC
Q 013545          416 LVWCPSR  422 (441)
Q Consensus       416 ~vW~~~~  422 (441)
                      ++|....
T Consensus       317 ~~~~~~~  323 (342)
T d1yfqa_         317 KTNAAID  323 (342)
T ss_dssp             HHCSSSC
T ss_pred             EEeeeeC
Confidence            9997643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9e-28  Score=224.29  Aligned_cols=257  Identities=16%  Similarity=0.186  Sum_probs=180.9

Q ss_pred             eecCCC-CceeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           38 IVSPHK-GSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        38 ~~~~H~-~~V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      .+.+|. ..|++++|+|. ++++|+||+.||+|+|||+.......         ............|.++|.++.|++ +
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~---------~~~~~~~~~~~~~~~~v~~v~~s~-~  126 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---------SVEVNVKSEFQVLAGPISDISWDF-E  126 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---------EEEEEEEEEEECCSSCEEEEEECT-T
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee---------eeecccccccccccCcEEEEEECC-C
Confidence            456775 68999999974 56899999999999999986544321         000001112346888999999986 6


Q ss_pred             CCEEEEEeC--CCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee---ecCC
Q 013545          116 TGLFVTGSY--DHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LSGH  189 (441)
Q Consensus       116 ~~~l~sgs~--D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~---l~~h  189 (441)
                      +.++++++.  |+.+++|+..+++.+..+. +...+.++.+++..  ..++++++.|+.|++||+++.+....   ..+|
T Consensus       127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  204 (325)
T d1pgua1         127 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR--PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ  204 (325)
T ss_dssp             SSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS--SCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred             CCccceeeccccceEEEEeecccccceeeeecccccccccccccc--cceEEEeecccccccccccccccceecccccCC
Confidence            788877654  7789999999998887776 35668888888754  34678899999999999988876544   4567


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ...|.+++|+|++..+|++++.|+.|++||++++.++..++....                                   
T Consensus       205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-----------------------------------  249 (325)
T d1pgua1         205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-----------------------------------  249 (325)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-----------------------------------
T ss_pred             CCccEEeeeccccceeccccccccceeeeeecccccccccccccc-----------------------------------
Confidence            888999999998655789999999999999988766554421100                                   


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  349 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~  349 (441)
                                                      .+.+.+.++++ |||++|++++.|++|+|||+++++..    .....+
T Consensus       250 --------------------------------~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~----~~~~~~  292 (325)
T d1pgua1         250 --------------------------------PVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCV----QKWTLD  292 (325)
T ss_dssp             --------------------------------CCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEE----EEEECC
T ss_pred             --------------------------------ccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEE----EEEEec
Confidence                                            11223444444 68999999999999999999987532    122222


Q ss_pred             cC--cceEEEeeCC-CcEEEEeC-CCceEEEEc
Q 013545          350 TS--KPIQLATTQD-PAVVFVPC-MTAVKAFDI  378 (441)
Q Consensus       350 ~~--~~~~~~~~~~-~~~~~~~~-~~~~~~wd~  378 (441)
                      ..  ....+++.+. ...+++++ .+.+++||+
T Consensus       293 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            21  1223333322 23455544 578999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.5e-26  Score=217.49  Aligned_cols=282  Identities=10%  Similarity=0.035  Sum_probs=202.4

Q ss_pred             eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC
Q 013545           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D  125 (441)
                      ++.-.|||.+|+++|+++. |.|.+||+.++...                   ..+|...|.++.|+| |+++|++++.|
T Consensus         5 ~~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~-------------------~~~~~~~v~~~~~sp-Dg~~l~~~~~~   63 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVL-------------------KVPEPLRIRYVRRGG-DTKVAFIHGTR   63 (360)
T ss_dssp             GGEEEEEECGGGCEEEEET-TEEEEECTTSSBEE-------------------ECSCCSCEEEEEECS-SSEEEEEEEET
T ss_pred             hhcccccCCCCCEEEEEEC-CeEEEEECCCCcEE-------------------EccCCCCEEEEEECC-CCCEEEEEEcC
Confidence            3456799867888888864 79999999755321                   126888999999987 78888877665


Q ss_pred             C--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545          126 H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       126 ~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~  203 (441)
                      .  .|++||+.+++......+.+.+..+.++|++   .+|++++.++.+++|++++++....+..|...+.+++|+|+++
T Consensus        64 ~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  140 (360)
T d1k32a3          64 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR  140 (360)
T ss_dssp             TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred             CCCEEEEEECCCCcEEEeeCCCceEEeeeecccc---cccceeccccccccccccccceeeeeecccccccchhhcccee
Confidence            3  7999999998877666677788899999865   4889999999999999999999899999999999999999998


Q ss_pred             cEEEEe---------ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545          204 WILVTG---------GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS  274 (441)
Q Consensus       204 ~~l~s~---------s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (441)
                      +++++.         ..++.+++||+.++.....                                              
T Consensus       141 ~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~----------------------------------------------  174 (360)
T d1k32a3         141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA----------------------------------------------  174 (360)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC----------------------------------------------
T ss_pred             eeeeeccccccceeeccccceeeeccccCceeee----------------------------------------------
Confidence            653332         2345688898875432211                                              


Q ss_pred             CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee---eeeeEEec--
Q 013545          275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV---NFETVRLQ--  349 (441)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~---~~~~~~~~--  349 (441)
                                                ..|...+..++|+|||++|++++.|+.+++||.........   ......+.  
T Consensus       175 --------------------------~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  228 (360)
T d1k32a3         175 --------------------------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG  228 (360)
T ss_dssp             --------------------------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred             --------------------------cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccC
Confidence                                      12334567889999999999999999999998754321100   00000000  


Q ss_pred             ----------------------------------cCcceEEEeeCCCcEEEEeC--------------CCceEEEEccCC
Q 013545          350 ----------------------------------TSKPIQLATTQDPAVVFVPC--------------MTAVKAFDIWSG  381 (441)
Q Consensus       350 ----------------------------------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~wd~~~~  381 (441)
                                                        ......+...+++...+...              ...+++||+.++
T Consensus       229 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  308 (360)
T d1k32a3         229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR  308 (360)
T ss_dssp             CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred             ccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC
Confidence                                              00011122222222222111              125889999887


Q ss_pred             ceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545          382 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       382 ~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~  427 (441)
                      +.    ..|.+.|.+++|||||++|++++.|++|++|++.++....
T Consensus       309 ~~----~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         309 KV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             CE----EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             eE----EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            54    3455669999999999999999999999999998877554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.9e-27  Score=223.26  Aligned_cols=266  Identities=16%  Similarity=0.181  Sum_probs=172.3

Q ss_pred             CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC----CCCEEEEEeCCCcEEEE
Q 013545           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV----DTGLFVTGSYDHYVKVW  131 (441)
Q Consensus        56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~~l~sgs~D~~i~iW  131 (441)
                      ..++++++.||+|++|++........   +...    .........+...+..+.+.+.    .+.++++++.|+++++|
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw  151 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKK---VIFE----KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW  151 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCC---EEEE----EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceee---eecc----ccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEE
Confidence            45788999999999999764432110   0000    0000111235555666666442    24689999999999999


Q ss_pred             ECCCCe-------------E-E-EEEe----cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee------ee
Q 013545          132 DTNCTR-------------V-V-MNFK----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ------TL  186 (441)
Q Consensus       132 d~~~~~-------------~-~-~~~~----~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~------~l  186 (441)
                      |+....             . + ....    ....+.++++++++    +||+|+.|+.|++||+++++++.      .+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l  227 (393)
T d1sq9a_         152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG----LIATGFNNGTVQISELSTLRPLYNFESQHSM  227 (393)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred             EeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC----EEEEEeCCCcEEEEeeccccccccccccccc
Confidence            964210             0 0 1111    12335667777643    78999999999999999988654      34


Q ss_pred             cCCCCCeEEEEEecCCCcEEEEeecCCc---EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          187 SGHRDGIMTVEWSTSSEWILVTGGCDGA---IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~---I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      .+|...|.+++|+|+++ +|++|+.|++   |++||++++.+...+.......                           
T Consensus       228 ~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~---------------------------  279 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS---------------------------  279 (393)
T ss_dssp             -CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC-------------------------------
T ss_pred             ccccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccc---------------------------
Confidence            67999999999999998 5799999975   9999999887776653211000                           


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~  343 (441)
                                                     .......+|.+.|++|+|+||+++|+|||.|++|++||+.+++..    
T Consensus       280 -------------------------------~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~----  324 (393)
T d1sq9a_         280 -------------------------------QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI----  324 (393)
T ss_dssp             -----------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE----
T ss_pred             -------------------------------cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE----
Confidence                                           001123579999999999999999999999999999999987532    


Q ss_pred             eeEEeccCcc----eEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCC----------CCeEEEe
Q 013545          344 ETVRLQTSKP----IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ----------DQELYTG  409 (441)
Q Consensus       344 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd----------~~~l~s~  409 (441)
                      ..+..+.+..    ..+++.+++..++.                        ..++++.|.++          ++.|+++
T Consensus       325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T d1sq9a_         325 TTLNMHCDDIEIEEDILAVDEHGDSLAE------------------------PGVFDVKFLKKGWRSGMGADLNESLCCV  380 (393)
T ss_dssp             EEEECCGGGCSSGGGCCCBCTTSCBCSS------------------------CCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred             EEECCcCCcccCCccEEEECCCCCEEEE------------------------cccceEEECccCceeccccCCCCEEEEE
Confidence            2222222211    12445555543221                        12344444332          3458899


Q ss_pred             ecCCcEEEeC
Q 013545          410 GNDRQILVWC  419 (441)
Q Consensus       410 s~D~~i~vW~  419 (441)
                      +.|+.||+|.
T Consensus       381 ~~d~~ir~~~  390 (393)
T d1sq9a_         381 CLDRSIRWFR  390 (393)
T ss_dssp             ETTTEEEEEE
T ss_pred             EcCCeEEEEe
Confidence            9999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-26  Score=215.19  Aligned_cols=258  Identities=15%  Similarity=0.111  Sum_probs=177.1

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR----VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~v  174 (441)
                      ..+|++.|+++.|+| ++++|||||.|++|||||+..+.    +...+.+.+.+.+++|++..  ..+|++|+.|+.|++
T Consensus         7 ~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~--~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT--DLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--SEEEEEEETTSCEEE
T ss_pred             CCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC--CCEEEEcccccceee
Confidence            358999999999997 78899999999999999986543    23444577889999998753  458999999999999


Q ss_pred             EECCCCceeeeecCCCCCeE-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545          175 CDIASGAISQTLSGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN  253 (441)
Q Consensus       175 wdl~~~~~~~~l~~h~~~v~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (441)
                      |++..+........+...+. ...+.++.. .+++++.|+++++||++.+...........                   
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~-------------------  143 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLN-------------------  143 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESC-------------------
T ss_pred             eecccccccccccccccccccccccccccc-cccccccccccceeeccccccceeeecccc-------------------
Confidence            99998877766665554444 444455544 678999999999999875422111100000                   


Q ss_pred             CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545          254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~  333 (441)
                                                                    ...+........+.+++..+++++.|+.|++||+
T Consensus       144 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  177 (342)
T d1yfqa_         144 ----------------------------------------------SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL  177 (342)
T ss_dssp             ----------------------------------------------SSSSSSCCCEEEEEECSSEEEEEESTTEEEEEES
T ss_pred             ----------------------------------------------cccccceeeeeeeeccCCceeeecCCCcEEEEec
Confidence                                                          0000112334567788999999999999999999


Q ss_pred             CCCCceeeeeeeEEeccCcceEEEe-eCCCcEEEEe-CCCceEEEEccCCce---------------EeeecccccceEE
Q 013545          334 ESGRNTLVNFETVRLQTSKPIQLAT-TQDPAVVFVP-CMTAVKAFDIWSGKT---------------CLTFRGHYEYVNC  396 (441)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~wd~~~~~~---------------~~~l~gh~~~v~~  396 (441)
                      ...+........ ............ ..++..++++ ..+.+.+|+......               .....+|...|++
T Consensus       178 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (342)
T d1yfqa_         178 PLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS  256 (342)
T ss_dssp             SCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred             ccCcccceeeee-cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccccee
Confidence            876532211111 111112222222 2344444444 346788887644211               1123577788999


Q ss_pred             EEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          397 CCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       397 v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      |+|+|++++|||||.||+|++||+.+++..
T Consensus       257 l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             EEecCCccEEEEECCCCEEEEEECCCCcEE
Confidence            999999999999999999999999887643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.5e-25  Score=209.10  Aligned_cols=264  Identities=18%  Similarity=0.293  Sum_probs=185.9

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      +++||...|.++.. + ++++||||+.|++|++||+.+++++.++.. .+.+.++++++.    .+|++|+.|+.|++|+
T Consensus         7 tL~GH~~~vitc~~-~-~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~----~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           7 TLRGHMTSVITCLQ-F-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG----GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEECCSSSCEEEEE-E-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT----TEEEEEETTCCEEEEE
T ss_pred             EECCcCCCcEEEEE-E-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC----CEEEEEeccccccccc
Confidence            34689988744322 2 578999999999999999999999988874 677999998863    3789999999999999


Q ss_pred             CCCCceeeeecCCC--CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          177 IASGAISQTLSGHR--DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       177 l~~~~~~~~l~~h~--~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                      +...+.......+.  .......+.++++ .+++++.|++|++||++...............                  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~------------------  141 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP------------------  141 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCC------------------
T ss_pred             ccccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceec------------------
Confidence            99988766554433  3345566777766 57899999999999998754332211000000                  


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                       .              ....+               ............|...+.  .+.+++.+++++..|+.|++||+.
T Consensus       142 -~--------------~~~~~---------------~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~  189 (355)
T d1nexb2         142 -L--------------VFHTP---------------EENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVA  189 (355)
T ss_dssp             -E--------------EESCT---------------TTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETT
T ss_pred             -c--------------ceecc---------------ccccceeeeeeecccccc--ccccccceeeeecccceeeeeecc
Confidence             0              00000               000000001123444443  466788999999999999999998


Q ss_pred             CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545          335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      +++..    ..............+++++..++.++. +.+++||+.++..+..+.+|...|.+++|++  ++|++|+.|+
T Consensus       190 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg  263 (355)
T d1nexb2         190 QMKCL----YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADG  263 (355)
T ss_dssp             TTEEE----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTS
T ss_pred             cccce----eeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccc
Confidence            76532    122223344556778888887777654 6899999999999999999999999999875  6899999999


Q ss_pred             cEEEeCCCCCC
Q 013545          414 QILVWCPSRHI  424 (441)
Q Consensus       414 ~i~vW~~~~~~  424 (441)
                      +|++||+.+..
T Consensus       264 ~i~iwd~~~~~  274 (355)
T d1nexb2         264 SIRGWDANDYS  274 (355)
T ss_dssp             EEEEEETTTCC
T ss_pred             ccccccccccc
Confidence            99999998654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=5.3e-25  Score=204.61  Aligned_cols=253  Identities=23%  Similarity=0.339  Sum_probs=200.9

Q ss_pred             cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus        98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      +++||+++|.+++|+| ++.+||||+.|++|+|||+.+++.+..+.. .+.+.++.++|..   .++++|+.|+.+++|+
T Consensus        50 tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---NYVACGGLDNICSIYN  125 (340)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS---SEEEEEETTCCEEEEE
T ss_pred             EECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc---eeeeeecccceeeccc
Confidence            4569999999999987 789999999999999999999999888875 5678889998854   5899999999999999


Q ss_pred             CCCCc----eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545          177 IASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ  252 (441)
Q Consensus       177 l~~~~----~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (441)
                      .....    ....+.+|..........++.  .++....|...+.|+.........                        
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------------------  179 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTT------------------------  179 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTTEEEEE------------------------
T ss_pred             ccccccccccceeccccccccccccccccc--cccccccccccccccccccccccc------------------------
Confidence            87653    345677888887777776654  467788899999998764321110                        


Q ss_pred             cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545          253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  332 (441)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd  332 (441)
                                                                     ...+...+....+.+.+.++++|+.|++|++||
T Consensus       180 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d  212 (340)
T d1tbga_         180 -----------------------------------------------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             -----------------------------------------------EECCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             -----------------------------------------------ccccceeEeeeccccccceeEEeecCceEEEEE
Confidence                                                           112345578889999999999999999999999


Q ss_pred             CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee--cccccceEEEEEcCCCCeEEEe
Q 013545          333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF--RGHYEYVNCCCFSSQDQELYTG  409 (441)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l--~gh~~~v~~v~fspd~~~l~s~  409 (441)
                      +.+++..    .....+...+..++++|++..+++++. +.+++|++...+....+  ..|...|.+++|+|++++|++|
T Consensus       213 ~~~~~~~----~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g  288 (340)
T d1tbga_         213 VREGMCR----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG  288 (340)
T ss_dssp             TTTTEEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEE
T ss_pred             CCCCcEE----EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEE
Confidence            9886532    222334455667889999998888755 68999999988877654  5667789999999999999999


Q ss_pred             ecCCcEEEeCCCCCCCCCccCC
Q 013545          410 GNDRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       410 s~D~~i~vW~~~~~~~~~~~~~  431 (441)
                      +.|++|++||+.++.......|
T Consensus       289 ~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         289 YDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC
T ss_pred             ECCCEEEEEECCCCcEEEEEcC
Confidence            9999999999988776555443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-23  Score=194.01  Aligned_cols=277  Identities=22%  Similarity=0.334  Sum_probs=183.8

Q ss_pred             ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus        99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      ++||++.|.++ +.+ ++++|||||.|++|+|||+.+++++.++.. .+.+.++.+++     .+|++|+.|+.+++|+.
T Consensus        12 l~GH~~~V~s~-~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~-----~~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          12 LKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-----NIIISGSTDRTLKVWNA   84 (342)
T ss_dssp             EECSTTSCEEE-EEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET-----TEEEEEETTSCEEEEET
T ss_pred             ECCcCCceEEE-EEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC-----Cccccceeccccccccc
Confidence            45899998653 333 688999999999999999999999887764 46688888765     37999999999999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      ...........+...+....+.+.   .++.+..|+++.+||.+++.....+.........       ....        
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--------  146 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC-------VQYD--------  146 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE-------EEEC--------
T ss_pred             ccccceecccccceeEeeeecccc---cccccccceeEEEeecccccceeeeeccccccee-------eccc--------
Confidence            988877777777777777766553   4578899999999999987665544321110000       0000        


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                               .........++.+...       ............+|...+.  .+++++.+|++|+.|++|++||+..++
T Consensus       147 ---------~~~~~~~~~d~~i~~~-------d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~  208 (342)
T d2ovrb2         147 ---------GRRVVSGAYDFMVKVW-------DPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGN  208 (342)
T ss_dssp             ---------SSCEEEEETTSCEEEE-------EGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred             ---------cceeeeecCCCeEEEe-------ecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEeecccce
Confidence                     0000000000000000       0000000111234554444  456688999999999999999998876


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc---cccceEEEEEcCCCCeEEEeecCC
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g---h~~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      ...    ....+...  ..++.+++.++++++. +.+++||+...+....+.+   |...+.++.|+  +.++++|+.|+
T Consensus       209 ~~~----~~~~~~~~--v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg  280 (342)
T d2ovrb2         209 CIH----TLTGHQSL--TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG  280 (342)
T ss_dssp             EEE----EECCCCSC--EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             eee----Eecccccc--eeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCC
Confidence            321    11112222  2344455667777654 6899999999887777665   55567777665  46999999999


Q ss_pred             cEEEeCCCCCCCC
Q 013545          414 QILVWCPSRHISD  426 (441)
Q Consensus       414 ~i~vW~~~~~~~~  426 (441)
                      +|++|++.+++..
T Consensus       281 ~i~iwd~~tg~~i  293 (342)
T d2ovrb2         281 TVKLWDLKTGEFI  293 (342)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             EEEEEECCCCCEE
Confidence            9999999987654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.5e-22  Score=184.97  Aligned_cols=269  Identities=14%  Similarity=0.133  Sum_probs=200.5

Q ss_pred             EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCcEEEEECCCCe
Q 013545           59 LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNCTR  137 (441)
Q Consensus        59 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~i~iWd~~~~~  137 (441)
                      .++++.|++|.|||+++++...          .+        .....+..++++| |+++| ++++.+++|++||+.+++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~----------~i--------~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~   65 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTA----------TI--------PVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNN   65 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEE----------EE--------ECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEECCCCEEEEEECCCCeEEE----------EE--------ECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCc
Confidence            4688899999999998775311          00        0112345677776 77766 677789999999999999


Q ss_pred             EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEE
Q 013545          138 VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF  217 (441)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~i  217 (441)
                      .+..+........+.++++.  ..+++++..+..+.+|+..+++....+..+ ..+.++.|+|+++.+++++..++.+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          66 VIATVPAGSSPQGVAVSPDG--KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEEEEECSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeecccccccccccccc--ccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceee
Confidence            99888877667777777753  456777778889999999999888887655 456889999999987788888999999


Q ss_pred             EEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccc
Q 013545          218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQ  297 (441)
Q Consensus       218 WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (441)
                      |+..+......+.                                                                   
T Consensus       143 ~~~~~~~~~~~~~-------------------------------------------------------------------  155 (301)
T d1l0qa2         143 INTVTKAVINTVS-------------------------------------------------------------------  155 (301)
T ss_dssp             EETTTTEEEEEEE-------------------------------------------------------------------
T ss_pred             eeccccceeeecc-------------------------------------------------------------------
Confidence            9988764433221                                                                   


Q ss_pred             ccceeeccCeEEEEEccCCCEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----Cc
Q 013545          298 DRATAHYGAVTGLKVTEDGMYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TA  372 (441)
Q Consensus       298 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  372 (441)
                           +...+..++++|++.++++++.+ +.+.+|+....+..     ........+...++.+++..+++.+.    ..
T Consensus       156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~  225 (301)
T d1l0qa2         156 -----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (301)
T ss_dssp             -----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             -----cCCCceEEEeeccccceeeecccccccccccccceeee-----ecccccCCcceeeccccccccccccccceeee
Confidence                 12336778999999988877766 55666766654321     11112344566788899888766532    46


Q ss_pred             eEEEEccCCceEeeecccccceEEEEEcCCCCeE-EEeecCCcEEEeCCCCCCCCC
Q 013545          373 VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILVWCPSRHISDG  427 (441)
Q Consensus       373 ~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l-~s~s~D~~i~vW~~~~~~~~~  427 (441)
                      +.+||..+++...++..+ ..+.+++|||||++| ++++.|++|++||+.+++...
T Consensus       226 v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         226 VSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            999999999998888765 457999999999987 688889999999999887543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=4.4e-24  Score=206.88  Aligned_cols=334  Identities=10%  Similarity=-0.010  Sum_probs=214.0

Q ss_pred             ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (441)
Q Consensus        39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  118 (441)
                      +..| ..+..++||| +|++|++++.|++|++||+.++....          +..+  ....+|.+.+.+..++| ||++
T Consensus        58 ~~~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~----------~~~i--~~~~~~~~~~~s~~~Sp-DG~~  122 (432)
T d1qksa2          58 LDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTT----------VAEI--KIGSEARSIETSKMEGW-EDKY  122 (432)
T ss_dssp             EECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCE----------EEEE--ECCSEEEEEEECCSTTC-TTTE
T ss_pred             EeCC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceE----------EEEE--ecCCCCCCeEEecccCC-CCCE
Confidence            3344 4699999997 68999999999999999998764210          0001  12234555555555554 7887


Q ss_pred             E-EEEeCCCcEEEEECCCCeEEEEEecC------------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545          119 F-VTGSYDHYVKVWDTNCTRVVMNFKMP------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (441)
Q Consensus       119 l-~sgs~D~~i~iWd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~  185 (441)
                      | ++++.|++|++||..+++++..+...            +....+.+++++  ..++++...++.|.+||..+++....
T Consensus       123 l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~~~~vs~~~~~~i~~~d~~~~~~~~~  200 (432)
T d1qksa2         123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR--PEFIVNVKETGKILLVDYTDLNNLKT  200 (432)
T ss_dssp             EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC--CEEEEEEccCCeEEEEEccCCCcceE
Confidence            5 78899999999999999988766532            233445566643  35667778889999999998876543


Q ss_pred             ec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545          186 LS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR  264 (441)
Q Consensus       186 l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (441)
                      .. .+...+..++|+|+++++++++..++.|.++|.++.+....+...........  .....                .
T Consensus       201 ~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~--~~~~~----------------~  262 (432)
T d1qksa2         201 TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANFV----------------H  262 (432)
T ss_dssp             EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEEE----------------E
T ss_pred             EEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCc--cccee----------------c
Confidence            33 34566789999999998777777778999999988776655543221100000  00000                0


Q ss_pred             cCCCCCccccCcc--cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545          265 SANGNGVRQSSVG--RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       265 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                      ...+........+  .+...+           ........|...|....++|++..+++++.|.+.++|+..+.....  
T Consensus       263 ~~~g~~~~~~~lg~~~v~~~~-----------~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~--  329 (432)
T d1qksa2         263 PTFGPVWATSHMGDDSVALIG-----------TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA--  329 (432)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEE-----------CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH--
T ss_pred             CCCCceecccccCCceEEecc-----------cccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCC--
Confidence            0000000000000  000000           0001123456678899999999999999999999999876543210  


Q ss_pred             eeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee-----cCCcEE
Q 013545          343 FETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-----NDRQIL  416 (441)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s-----~D~~i~  416 (441)
                              .....++ .+|+..++++.. ..+++|++.++.   .+..|.+.|..++|||||++|+...     .|+.|+
T Consensus       330 --------~~~~sv~-vpDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~  397 (432)
T d1qksa2         330 --------EISGSVA-VFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALV  397 (432)
T ss_dssp             --------HHHTCEE-EEEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEE
T ss_pred             --------CeeeEEE-EEechhhcccccCCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEE
Confidence                    0011122 266666666544 689999986553   3346778899999999999885432     468899


Q ss_pred             EeCCCCCCCCCccCCc
Q 013545          417 VWCPSRHISDGVDAGP  432 (441)
Q Consensus       417 vW~~~~~~~~~~~~~~  432 (441)
                      |||..+.++..++.|+
T Consensus       398 i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         398 VVDDKTLELKHVIKDE  413 (432)
T ss_dssp             EEETTTTEEEEEECCT
T ss_pred             EEECCCceEEeEecCC
Confidence            9999999876666554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.3e-22  Score=180.84  Aligned_cols=235  Identities=21%  Similarity=0.351  Sum_probs=171.8

Q ss_pred             cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      .+|..+|.|+.+   ++++|||||.|++|+|||+.+++++..++. .+.+.++.+.     ..+|++|+.|+.|++|++.
T Consensus        12 ~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~-----~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          12 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-----SSEEEEEETTSCEEEEESS
T ss_pred             CCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc-----cceeecccccccccccccc
Confidence            368888988654   688999999999999999999999988874 5667766552     3489999999999999999


Q ss_pred             CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      .+........+......  +.+... .++++..++.+++||+.........                             
T Consensus        84 ~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  131 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLR-----------------------------  131 (293)
T ss_dssp             SCCEEEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEE-----------------------------
T ss_pred             ccccccccccccccccc--cccccc-ceeecccccceeEeecccccccccc-----------------------------
Confidence            99877766655554443  333434 4688999999999998754221110                             


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  338 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~  338 (441)
                                                             .....|...+..+.+.  ...+++++.|++|++||+.+++.
T Consensus       132 ---------------------------------------~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~  170 (293)
T d1p22a2         132 ---------------------------------------RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEF  170 (293)
T ss_dssp             ---------------------------------------EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCE
T ss_pred             ---------------------------------------ccccccccccccceec--ccccccccCCCceeeecCCCCcE
Confidence                                                   0012355667666665  45788999999999999998763


Q ss_pred             eeeeeeeEEeccCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEE
Q 013545          339 TLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV  417 (441)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~v  417 (441)
                      ..    .........  ....+++..++++ ..+.+++||+.+.+.+..+.+|...+.+  +++++.+|++|+.|++|++
T Consensus       171 ~~----~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~i  242 (293)
T d1p22a2         171 VR----TLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKV  242 (293)
T ss_dssp             EE----EEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEE
T ss_pred             EE----EEccccccc--ccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEE
Confidence            21    112122222  2233345555555 4478999999999999999999998875  5678899999999999999


Q ss_pred             eCCCCC
Q 013545          418 WCPSRH  423 (441)
Q Consensus       418 W~~~~~  423 (441)
                      |++.+.
T Consensus       243 wd~~~~  248 (293)
T d1p22a2         243 WDLVAA  248 (293)
T ss_dssp             EEHHHH
T ss_pred             EECCCC
Confidence            987543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=7.9e-22  Score=179.49  Aligned_cols=234  Identities=13%  Similarity=0.126  Sum_probs=165.1

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      ...+|...|.++++++ + ..++|++.|++|++|++.....                        ...+.++.+.+ ++ 
T Consensus        41 ~~~~h~~~V~~~~~~~-~-~~~~s~s~D~~v~~w~~~~~~~------------------------~~~~~~~~~~~-~~-   92 (287)
T d1pgua2          41 MHQDHSNLIVSLDNSK-A-QEYSSISWDDTLKVNGITKHEF------------------------GSQPKVASANN-DG-   92 (287)
T ss_dssp             EECCCCSCEEEEECCS-T-TCCEEEETTTEEEETTEEEEEC------------------------SSCEEEEEECS-SS-
T ss_pred             CCCCCCCCEEEEEecC-C-CeEEEEeecccccccccccccc------------------------ccceeeeeecc-CC-
Confidence            4568999999999974 3 4689999999999999753211                        11233344443 44 


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC-CcEEEEECCCCceeeeec-CCCCCeEE
Q 013545          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-VQVRLCDIASGAISQTLS-GHRDGIMT  195 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-~~I~vwdl~~~~~~~~l~-~h~~~v~~  195 (441)
                      .++..+.++.+.+|+..++..+..+.......  .+++..   ..+++++.+ +.|++|++...+....+. .|...+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~  167 (287)
T d1pgua2          93 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQ---NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY  167 (287)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCEE--EEEECS---SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred             ceEEEeecccceeeeccceeeeeeccccceee--eeeccC---cceeeeccccceeeeeeccccceeeeeeeccCCceeE
Confidence            44445667789999999999888887665544  334432   245555555 579999998766555443 58889999


Q ss_pred             EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  275 (441)
Q Consensus       196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (441)
                      ++|+|+++ +|++|+.||.|++||+.++.....                                               
T Consensus       168 ~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~-----------------------------------------------  199 (287)
T d1pgua2         168 ISISPSET-YIAAGDVMGKILLYDLQSREVKTS-----------------------------------------------  199 (287)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTTTEEEEC-----------------------------------------------
T ss_pred             EEeccCcc-ccccccccccccceeecccccccc-----------------------------------------------
Confidence            99999998 478999999999999876432110                                               


Q ss_pred             cccccCCCCcccccCCCcccccccceeeccCeEEEEEccC----------CCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545          276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED----------GMYLLSAGSDSRIRLWDVESGRNTLVNFET  345 (441)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d----------g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~  345 (441)
                                             ...+|..+|.+++|+|+          +.+|+||+.|++|++||+.+.....   ..
T Consensus       200 -----------------------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~---~~  253 (287)
T d1pgua2         200 -----------------------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII---KA  253 (287)
T ss_dssp             -----------------------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE---EE
T ss_pred             -----------------------cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEE---EE
Confidence                                   12356777888888764          5689999999999999998744222   22


Q ss_pred             EEeccCcceEEEeeCCCcEEEEeCCCceEEEEc
Q 013545          346 VRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDI  378 (441)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~  378 (441)
                      ...+......+++.+++.++..+....+++|++
T Consensus       254 ~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             eCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            223345566778888876555556679999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=5.1e-22  Score=191.94  Aligned_cols=315  Identities=13%  Similarity=0.104  Sum_probs=198.1

Q ss_pred             eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (441)
Q Consensus        38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  117 (441)
                      .+..| ..+..++||| +|++|++++.|++|++||+.+++..          .+..  -....+|...+.++.++| ||+
T Consensus        57 ~l~~g-~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~----------~~~~--i~~~~~~~~~~~s~~~sp-DG~  121 (426)
T d1hzua2          57 VIDTG-YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPT----------KVAE--IKIGIEARSVESSKFKGY-EDR  121 (426)
T ss_dssp             EEECC-SSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCE----------EEEE--EECCSEEEEEEECCSTTC-TTT
T ss_pred             EEeCC-CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCcee----------EEEE--EeCCCCCcceEEeeeecC-CCC
Confidence            34445 4699999997 6889999999999999999876531          0111  122335666666666666 787


Q ss_pred             EE-EEEeCCCcEEEEECCCCeEEEEEecCC------------eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-
Q 013545          118 LF-VTGSYDHYVKVWDTNCTRVVMNFKMPG------------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-  183 (441)
Q Consensus       118 ~l-~sgs~D~~i~iWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~-  183 (441)
                      ++ +++..|+++++||..++.++......+            ....+..+++.  ..++.+....+.+.+++..++... 
T Consensus       122 ~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~--~~~~~~~~~~~~i~~~~~~~~~~~~  199 (426)
T d1hzua2         122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH--PEFIVNVKETGKVLLVNYKDIDNLT  199 (426)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEECSSSSSCE
T ss_pred             EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCC--CEEEEecCCCCeEEEEEecccccee
Confidence            76 556689999999999998876655332            11222223221  223333333445555555554432 


Q ss_pred             eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      ....++...+..+.|+|++++++++...+..+.+||..+++.............                          
T Consensus       200 ~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  253 (426)
T d1hzua2         200 VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP--------------------------  253 (426)
T ss_dssp             EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC--------------------------
T ss_pred             eEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccc--------------------------
Confidence            234467788899999999998777777888999999988766554432110000                          


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~  343 (441)
                                                  .  ........|.+.+....+++++...+.++.+..+++|+..       ..
T Consensus       254 ----------------------------~--~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~-------~~  296 (426)
T d1hzua2         254 ----------------------------G--RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK-------KV  296 (426)
T ss_dssp             ----------------------------S--CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS-------EE
T ss_pred             ----------------------------c--ceeeeecCCCCceEEeccCCCceEEEeeccccccccccce-------Ee
Confidence                                        0  0000011223344444455555444444444433333221       12


Q ss_pred             eeEEeccCcceEEEeeCCCcEEEEeCC--------CceEEEEccCCceEeee---------cccccceEEEEEcCCCCeE
Q 013545          344 ETVRLQTSKPIQLATTQDPAVVFVPCM--------TAVKAFDIWSGKTCLTF---------RGHYEYVNCCCFSSQDQEL  406 (441)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~wd~~~~~~~~~l---------~gh~~~v~~v~fspd~~~l  406 (441)
                      ..+..+...+..++++|++..+++...        .++++||+.+++...++         ..|.+.|..++|||||+++
T Consensus       297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred             EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence            233344556677889999998886431        47999999998866543         3556679999999999976


Q ss_pred             -EEe----ecCCcEEEeCCCCCCCCCccCCc
Q 013545          407 -YTG----GNDRQILVWCPSRHISDGVDAGP  432 (441)
Q Consensus       407 -~s~----s~D~~i~vW~~~~~~~~~~~~~~  432 (441)
                       +|+    +.|++|+|||..+.+...++.|+
T Consensus       377 ~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         377 WFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             EEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence             343    46888999999999876666554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.5e-21  Score=188.58  Aligned_cols=287  Identities=9%  Similarity=0.048  Sum_probs=188.3

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR  137 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~  137 (441)
                      ++++.+.||+|+|||+.+++...            .     ...| ..+..++|+| ||+++++++.|++|++||+.+++
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~------------~-----l~~g-~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVK------------V-----IDTG-YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEE------------E-----EECC-SSEEEEEECT-TSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEE------------E-----EeCC-CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCc
Confidence            56999999999999998775321            0     1123 2477788876 89999999999999999999887


Q ss_pred             EEE--EEecCCe----eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeec
Q 013545          138 VVM--NFKMPGK----VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC  211 (441)
Q Consensus       138 ~~~--~~~~~~~----~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~  211 (441)
                      ...  .+.....    +.+..++|++  ..+++++..++.+++||.+++.++..+.+|...+....|.+++....+..+.
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~spDG--~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  172 (426)
T d1hzua2          95 PTKVAEIKIGIEARSVESSKFKGYED--RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  172 (426)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTT--TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             eeEEEEEeCCCCCcceEEeeeecCCC--CEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC
Confidence            543  3333222    2333444543  3456677789999999999999999999998888888888887766677788


Q ss_pred             CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545          212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP  291 (441)
Q Consensus       212 Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (441)
                      |+...+|.......+..+......                                                        
T Consensus       173 d~~~~~~~~~~~~~i~~~~~~~~~--------------------------------------------------------  196 (426)
T d1hzua2         173 EHPEFIVNVKETGKVLLVNYKDID--------------------------------------------------------  196 (426)
T ss_dssp             SSSEEEEEETTTTEEEEEECSSSS--------------------------------------------------------
T ss_pred             CCCEEEEecCCCCeEEEEEecccc--------------------------------------------------------
Confidence            888777765532221111100000                                                        


Q ss_pred             CcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeEEe-ccCcceEEEeeCCCcEEE-Ee
Q 013545          292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVF-VP  368 (441)
Q Consensus       292 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~  368 (441)
                         ........+...+..+.|+|+++++.++. .+..+.+|+..+++.... ...... ........ ..+....+. ..
T Consensus       197 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~  271 (426)
T d1hzua2         197 ---NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL-VDVGKTPHPGRGANF-VHPKYGPVWSTS  271 (426)
T ss_dssp             ---SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEE-EECSSCCCCSCCEEE-EETTTEEEEEEE
T ss_pred             ---ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEE-eccCCcccccceeee-ecCCCCceEEec
Confidence               00001123445688999999999877665 556788999987653211 111000 00111111 111111111 11


Q ss_pred             --CCCceEEEEc-------cCCceEeeecccccceEEEEEcCCCCeEE-------EeecCCcEEEeCCCCCCCC
Q 013545          369 --CMTAVKAFDI-------WSGKTCLTFRGHYEYVNCCCFSSQDQELY-------TGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       369 --~~~~~~~wd~-------~~~~~~~~l~gh~~~v~~v~fspd~~~l~-------s~s~D~~i~vW~~~~~~~~  426 (441)
                        ....+.+|+.       +.++...++.+|...+..++||||+++|+       +++.|++|+|||+.++...
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~  345 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  345 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcC
Confidence              1234555553       44678889999999999999999999999       5778999999999887654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=2.4e-20  Score=172.67  Aligned_cols=296  Identities=11%  Similarity=0.079  Sum_probs=192.8

Q ss_pred             cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCcEEEEECCC
Q 013545           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC  135 (441)
Q Consensus        57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~i~iWd~~~  135 (441)
                      +|+++++.|++|+|||+++++...          .+.     ...+...+..++++| |++++ ++++.|++|.+||+.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~----------~i~-----~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDK----------VIT-----IADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEE----------EEE-----CTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEE----------EEE-----CCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCC
Confidence            589999999999999998765310          010     112333456677876 78776 5778899999999999


Q ss_pred             CeEEEEEecCCe------eEEEeeccCCCCccEEEEEe------------CCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          136 TRVVMNFKMPGK------VYRTAMSPLAASHMLIAAGT------------EDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       136 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~las~s------------~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      ++.+..+.....      ...+.++++..   .++++.            .+..+.+||..+++....+..+ ..+.+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~  141 (337)
T d1pbyb_          66 GETLGRIDLSTPEERVKSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLA  141 (337)
T ss_dssp             CCEEEEEECCBTTEEEECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEE
T ss_pred             CcEEEEEecCCCcccccceeeEEEcCCCc---EEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEE
Confidence            999887765432      22455666532   333332            4678999999999988887754 5578999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  277 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (441)
                      |+|+++++ ++++  +.+.+||+.+++....+........                                 ....+.+
T Consensus       142 ~s~dg~~l-~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~  185 (337)
T d1pbyb_         142 WARDGSKL-YGLG--RDLHVMDPEAGTLVEDKPIQSWEAE---------------------------------TYAQPDV  185 (337)
T ss_dssp             ECTTSSCE-EEES--SSEEEEETTTTEEEEEECSTTTTTT---------------------------------TBCCCBC
T ss_pred             EcCCCCEE-EEEc--CCcceeeeecCcEEEEeecCCcccc---------------------------------ceecCCc
Confidence            99999864 5554  5688999988766554432111000                                 0000000


Q ss_pred             cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                      ...         ...      ....+...+.......+...+..++.++.+.+|++.++......+   ..........+
T Consensus       186 ~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  247 (337)
T d1pbyb_         186 LAV---------WNQ------HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV---RIMDVFYFSTA  247 (337)
T ss_dssp             CCC---------CCC------CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE---EECSSCEEEEE
T ss_pred             cee---------ecc------ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe---cCCCcceEEEE
Confidence            000         000      000011112223334445555566677789999998876432211   12233445566


Q ss_pred             eeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545          358 TTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                      +.+++..++.. ...+++||+.+++.+..+. +...+.+++|||||++|++++.|++|+|||..+.+..+.
T Consensus       248 ~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         248 VNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             ECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             ecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            77777776544 5789999999999988875 567789999999999999999999999999998775443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=1.9e-20  Score=173.91  Aligned_cols=307  Identities=13%  Similarity=0.078  Sum_probs=194.4

Q ss_pred             EEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCc
Q 013545           49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHY  127 (441)
Q Consensus        49 l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~  127 (441)
                      ++|++ +++||++++.|++|.+||+.+++...            ..    ...|...+.++.++| |+.++ ++++.++.
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~------------t~----~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~   63 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYK------------SC----VMPDKFGPGTAMMAP-DNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEE------------EE----ECSSCCSSCEEEECT-TSSEEEEEETTTTE
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEE------------EE----EcCCCCCcceEEECC-CCCEEEEEECCCCc
Confidence            46774 68899999999999999998765310            00    013444566788886 77776 66778999


Q ss_pred             EEEEECCCCeEEEEEecCCe-------eEEEeeccCCCCccEEEEE------------eCCCcEEEEECCCCceeeeecC
Q 013545          128 VKVWDTNCTRVVMNFKMPGK-------VYRTAMSPLAASHMLIAAG------------TEDVQVRLCDIASGAISQTLSG  188 (441)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~las~------------s~d~~I~vwdl~~~~~~~~l~~  188 (441)
                      |.+||+.+++.+..+.....       ...+.+++++.   .++++            ..+..+.+||..+++....+..
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~---~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  140 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  140 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecCCC---EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe
Confidence            99999999998877765321       23456666542   33333            2467899999998877665543


Q ss_pred             C--CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          189 H--RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       189 h--~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      +  ...+..+.+++++. ++++   ++.+.+||+.++.....+.......                              
T Consensus       141 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  186 (346)
T d1jmxb_         141 FPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNR------------------------------  186 (346)
T ss_dssp             EECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCC------------------------------
T ss_pred             eeccCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCcc------------------------------
Confidence            3  34456677777765 4443   3569999998877666553211100                              


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  346 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~  346 (441)
                         ....++.+.........             ............+.+....++++..+..+.+||+.++.....   ..
T Consensus       187 ---~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  247 (346)
T d1jmxb_         187 ---KGYSAPDVLYFWPHQSP-------------RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ---EF  247 (346)
T ss_dssp             ---TTBCCCBCCCCCCCCCT-------------TCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE---EE
T ss_pred             ---ceEEeccccEEEEEecC-------------CCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEE---Ee
Confidence               00011111000000000             000000112223445566777888889999999998763221   12


Q ss_pred             EeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          347 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ............++++..++......+.+||..+++.+..+. +...+.+++|||||++|++++.|++|++||+.+.+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         248 ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             ecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            222334455667777777666666789999999999888775 4456999999999999999999999999999988765


Q ss_pred             CccC
Q 013545          427 GVDA  430 (441)
Q Consensus       427 ~~~~  430 (441)
                      +.+.
T Consensus       327 ~~i~  330 (346)
T d1jmxb_         327 KNIK  330 (346)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=3.2e-21  Score=180.47  Aligned_cols=300  Identities=11%  Similarity=0.011  Sum_probs=190.6

Q ss_pred             eeecCCCCceeEEEccCCCCcEEEEeeCCC--cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           37 EIVSPHKGSINSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      .+..+|...|.+++|+| ++++|++++.|.  .|++||+.++...                  ...+|...|.++.|+| 
T Consensus        36 ~~~~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~------------------~~~~~~~~v~~~~~sp-   95 (360)
T d1k32a3          36 VLKVPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAE------------------KFEENLGNVFAMGVDR-   95 (360)
T ss_dssp             EEECSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEE------------------ECCCCCCSEEEEEECT-
T ss_pred             EEEccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEE------------------EeeCCCceEEeeeecc-
Confidence            34458999999999997 577888776654  6999999865421                  1236888899999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEE----------eCCCcEEEEECCCCcee
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAG----------TEDVQVRLCDIASGAIS  183 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~----------s~d~~I~vwdl~~~~~~  183 (441)
                      ++.+|++++.|+.+++|++.+++....+.. ...+..+.+++++.   +|+.+          ..++.+++||+++++..
T Consensus        96 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~  172 (360)
T d1k32a3          96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  172 (360)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             cccccceeccccccccccccccceeeeeecccccccchhhcccee---eeeeeccccccceeeccccceeeeccccCcee
Confidence            899999999999999999999988776654 34566788888643   45533          33456999999988764


Q ss_pred             eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                      . +..|...+..+.|+|+++. |++++.|+.+++||........  .......        .........          
T Consensus       173 ~-~~~~~~~~~~~~~spdg~~-l~~~s~~~~~~~~d~~~~~~~~--~~~~~~~--------~~~~~~~~~----------  230 (360)
T d1k32a3         173 A-ATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVLNFSF--EVVSKPF--------VIPLIPGSP----------  230 (360)
T ss_dssp             E-CSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSSSCEEC--CSCBEEE--------EEESSTTCC----------
T ss_pred             e-ecccccccccccccCCCCE-EEEEeCCCceEcccccccceee--ccccceE--------EEecccCcc----------
Confidence            4 4456778899999999985 6889999999999976532210  0000000        000000000          


Q ss_pred             ccCCCCCccccCcccccCCCCcc-----cccC--CCcccccccceeeccCeEEEEEccC---CCEEEEeecCCcEEEeeC
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVR-----QRLH--PGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIRLWDV  333 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~D~~i~~wd~  333 (441)
                           .....++.+.........     ....  +...........+.+.+..+.+.+.   +.++++++.++.|++||+
T Consensus       231 -----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  305 (360)
T d1k32a3         231 -----NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV  305 (360)
T ss_dssp             -----CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred             -----ccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEEC
Confidence                 000001111000000000     0000  0000000112233344444454444   446788999999999999


Q ss_pred             CCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce
Q 013545          334 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV  394 (441)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v  394 (441)
                      .+++...  +      ......++++||+..++++.. +.+++||+.+++...++..+..|+
T Consensus       306 ~~~~~~~--~------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         306 KTRKVTE--V------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             TTCCEEE--E------EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             CCCeEEE--e------cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence            9875321  1      122456889999998888754 789999999998888887776664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=2.4e-18  Score=166.08  Aligned_cols=148  Identities=14%  Similarity=0.041  Sum_probs=107.9

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR  137 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~  137 (441)
                      ++++.+.||+|.|||.++++...            .     ...| ..+..++|+| ||+++++++.|++|++||+.+++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~------------~-----~~~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKT------------V-----LDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEE------------E-----EECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEE------------E-----EeCC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCC
Confidence            46999999999999998775321            0     1122 2477788887 89999999999999999998776


Q ss_pred             E--EEEEecCCeeEEEeeccC-C-CCccEEEEEeCCCcEEEEECCCCceeeeecCC-----------CCCeEEEEEecCC
Q 013545          138 V--VMNFKMPGKVYRTAMSPL-A-ASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-----------RDGIMTVEWSTSS  202 (441)
Q Consensus       138 ~--~~~~~~~~~~~~~~~~~~-~-~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h-----------~~~v~~v~fsp~~  202 (441)
                      .  +..++.......+.+++. . .+..++++++.++.|++||.++++++..+.+|           .....++.++|++
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  174 (432)
T d1qksa2          95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  174 (432)
T ss_dssp             CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence            3  344444333334433331 1 23346688889999999999999988776554           3445678899998


Q ss_pred             CcEEEEeecCCcEEEEEcCCCc
Q 013545          203 EWILVTGGCDGAIRFWDIRRAG  224 (441)
Q Consensus       203 ~~~l~s~s~Dg~I~iWD~~~~~  224 (441)
                      +.++++...++.|.+||....+
T Consensus       175 ~~~~vs~~~~~~i~~~d~~~~~  196 (432)
T d1qksa2         175 PEFIVNVKETGKILLVDYTDLN  196 (432)
T ss_dssp             SEEEEEETTTTEEEEEETTCSS
T ss_pred             CEEEEEEccCCeEEEEEccCCC
Confidence            8777888888999999976543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=3.9e-17  Score=153.69  Aligned_cols=298  Identities=12%  Similarity=0.042  Sum_probs=189.7

Q ss_pred             cCCCCceeEEEccCCCCcEEEEe-----eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545           40 SPHKGSINSLQVDLTEERYLLSG-----ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        40 ~~H~~~V~~l~~s~~~~~~l~s~-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ..|.+++.+++++|+ ++.++..     +.++.+.+||..+++...            .+     .++.  ...++|+| 
T Consensus        17 ~~~~~p~~~~a~spd-g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~------------~~-----~~~~--~~~~a~Sp-   75 (373)
T d2madh_          17 GAADGPTNDEAPGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILG------------HV-----NGGF--LPNPVAAH-   75 (373)
T ss_pred             ccCCCCccccccCCC-CCEEEEEcccccCCCceEEEEECCCCCEEE------------EE-----eCCC--CccEEEcC-
Confidence            368899999999975 5555432     344678899988765321            00     1122  12467776 


Q ss_pred             CCCEEEEEe----------CCCcEEEEECCCCeEEEEEecCCee--------EEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545          115 DTGLFVTGS----------YDHYVKVWDTNCTRVVMNFKMPGKV--------YRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (441)
Q Consensus       115 ~~~~l~sgs----------~D~~i~iWd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~las~s~d~~I~vwd  176 (441)
                      ||.+|++++          .|+.|++||+.+++++..+..+...        ..+.++++.. ..+++....++.+.+|+
T Consensus        76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~  154 (373)
T d2madh_          76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC-cEEEEEEcCCCceEEee
Confidence            888888765          4678999999999988776654321        2344555432 22334445567788888


Q ss_pred             CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      ..+.+...    +.....++.|+|+++.++++.+.|+++.+||...+...........                      
T Consensus       155 ~~~~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~----------------------  208 (373)
T d2madh_         155 QGGSSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML----------------------  208 (373)
T ss_pred             ccCCeEEE----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc----------------------
Confidence            87766543    3344678999999998889999999999999876554332211000                      


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  336 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~  336 (441)
                                                                 ...+......+.+++++.++ ..+.++++.+|+..+.
T Consensus       209 -------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         209 -------------------------------------------TAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAA  244 (373)
T ss_pred             -------------------------------------------ccCccceeeeEEECCCceEE-EecCCceEEEEEcCCC
Confidence                                                       00011113345566666444 4567888888887765


Q ss_pred             Cceeeee--------eeEEeccCcceEEEeeCCCcEEEEe-----------CCCceEEEEccCCceEeeecccccceEEE
Q 013545          337 RNTLVNF--------ETVRLQTSKPIQLATTQDPAVVFVP-----------CMTAVKAFDIWSGKTCLTFRGHYEYVNCC  397 (441)
Q Consensus       337 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~wd~~~~~~~~~l~gh~~~v~~v  397 (441)
                      .......        .............++.+++..++..           ....+.+||..+++.+..+. +...+.++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~  323 (373)
T d2madh_         245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAI  323 (373)
T ss_pred             eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEE
Confidence            4211100        0001111222334555555544432           22468999999999888876 56678999


Q ss_pred             EEcCCCCe--EEEeecCCcEEEeCCCCCCCCCccC
Q 013545          398 CFSSQDQE--LYTGGNDRQILVWCPSRHISDGVDA  430 (441)
Q Consensus       398 ~fspd~~~--l~s~s~D~~i~vW~~~~~~~~~~~~  430 (441)
                      +|||||+.  +++++.|++|+|||..+++..+.+.
T Consensus       324 a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            99999984  4689999999999999999766554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=9.5e-18  Score=154.93  Aligned_cols=286  Identities=10%  Similarity=0.144  Sum_probs=181.6

Q ss_pred             EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE-EEeCCCcEEEEECCCC
Q 013545           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV-TGSYDHYVKVWDTNCT  136 (441)
Q Consensus        58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~-sgs~D~~i~iWd~~~~  136 (441)
                      .+++++.|++|++||+.....+.         .+.      ...|.+.|..++++| ||++|+ ++..|++|++|++...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~---------~~~------~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALT---------LTQ------VVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEE---------EEE------EEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeE---------EEE------EEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCC
Confidence            46889999999999986432210         000      114667788899987 788875 5556899999998755


Q ss_pred             eE----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee--eecCCCCCeEEEEEecCCCcEEEEee
Q 013545          137 RV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ--TLSGHRDGIMTVEWSTSSEWILVTGG  210 (441)
Q Consensus       137 ~~----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s  210 (441)
                      ..    ............+++++++.  .+++++..++.|.+|+........  ....+...+.++.|+|+++++++...
T Consensus        70 ~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          70 DGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             TCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             CCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc
Confidence            32    22233344456678888643  344444457789999988775433  34467778899999999987665555


Q ss_pred             cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccC
Q 013545          211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH  290 (441)
Q Consensus       211 ~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (441)
                      .+..|.+|+..............                                                         
T Consensus       148 ~~~~i~~~~~~~~~~~~~~~~~~---------------------------------------------------------  170 (333)
T d1ri6a_         148 KQDRICLFTVSDDGHLVAQDPAE---------------------------------------------------------  170 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEE---------------------------------------------------------
T ss_pred             ccceeeEEEeccCCcceeeecee---------------------------------------------------------
Confidence            66789999976532111100000                                                         


Q ss_pred             CCcccccccceeeccCeEEEEEccCCCEEEEe-ecCCcEEEeeCCCCCceeeeeeeEEe------ccCcceEEEeeCCCc
Q 013545          291 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA-GSDSRIRLWDVESGRNTLVNFETVRL------QTSKPIQLATTQDPA  363 (441)
Q Consensus       291 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  363 (441)
                              ...........++|++++.++... ...+...+|+................      ....+...++++++.
T Consensus       171 --------~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         171 --------VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             --------EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             --------eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence                    000112335678999999887654 45667888887654332221111111      112344567889988


Q ss_pred             EEEEeCC--CceEEEEccCCceEeeecc---cccceEEEEEcCCCCeEEEe-ecCCcEEEe--CCCCCCCC
Q 013545          364 VVFVPCM--TAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYTG-GNDRQILVW--CPSRHISD  426 (441)
Q Consensus       364 ~~~~~~~--~~~~~wd~~~~~~~~~l~g---h~~~v~~v~fspd~~~l~s~-s~D~~i~vW--~~~~~~~~  426 (441)
                      .++....  ..+.+|++........+.+   +...+.+++|||||++|+++ +.+++|+||  |..++++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            7776543  5789999876554433333   34567899999999997765 456899999  55666553

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=6.8e-17  Score=146.69  Aligned_cols=227  Identities=14%  Similarity=0.154  Sum_probs=173.4

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f  198 (441)
                      +++++.|++|.+||+++++.+.+++..+....++++|++.  .++++++.++.|++||+++++.+..+..|. .+..+.|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~--~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~   81 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGT--KVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV   81 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS--EEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCC--EEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccc
Confidence            4677899999999999999999999887788889998643  455777889999999999999999888775 4689999


Q ss_pred             ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  278 (441)
Q Consensus       199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (441)
                      ++++..+++++..++.+++||..++.+...+                                                 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  112 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-------------------------------------------------  112 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEE-------------------------------------------------
T ss_pred             ccccccccccccccceeeecccccceeeeec-------------------------------------------------
Confidence            9999888888888999999998876543322                                                 


Q ss_pred             ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545          279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  357 (441)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (441)
                                             .+...+..++|+|++..++ ++..++.+.+|+..+.+...    . ......+..++
T Consensus       113 -----------------------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~  164 (301)
T d1l0qa2         113 -----------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----T-VSVGRSPKGIA  164 (301)
T ss_dssp             -----------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----E-EECCSSEEEEE
T ss_pred             -----------------------cccccceEEEeecCCCeeeeeeccccceeeeeccccceee----e-cccCCCceEEE
Confidence                                   1223467789999998764 56678899999998765321    1 11234566778


Q ss_pred             eeCCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec---CCcEEEeCCCCCCCC
Q 013545          358 TTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN---DRQILVWCPSRHISD  426 (441)
Q Consensus       358 ~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~---D~~i~vW~~~~~~~~  426 (441)
                      +.+++..+++++.  ....+|+....+....+..+ ..+..++|+++++.++.++.   +++|++||+.+++..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             eeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            8898888777654  35667777666666666555 44678999999998875543   468999999987643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=6e-17  Score=151.07  Aligned_cols=288  Identities=11%  Similarity=0.081  Sum_probs=177.0

Q ss_pred             EccCCCCcEEEEe-----eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE--
Q 013545           50 QVDLTEERYLLSG-----ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG--  122 (441)
Q Consensus        50 ~~s~~~~~~l~s~-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg--  122 (441)
                      +.+| +++.++..     +.+.+|.+||..+++..      .   .   +       +.+.+..++|+| |+++|+.+  
T Consensus         8 a~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~------~---~---~-------~~g~~~~~a~Sp-Dg~~l~v~~~   66 (355)
T d2bbkh_           8 APAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVI------G---M---I-------DGGFLPNPVVAD-DGSFIAHAST   66 (355)
T ss_dssp             CCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEE------E---E---E-------EECSSCEEEECT-TSSCEEEEEE
T ss_pred             eeCC-CCCEEEEEecccCCCcCeEEEEECCCCcEE------E---E---E-------ECCCCCceEEcC-CCCEEEEEeC
Confidence            4565 45555443     45678999999876531      0   0   0       111223567776 78777653  


Q ss_pred             --------eCCCcEEEEECCCCeEEEEEecCC--------eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee
Q 013545          123 --------SYDHYVKVWDTNCTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (441)
Q Consensus       123 --------s~D~~i~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l  186 (441)
                              +.|+.|++||+.+++.+..+..+.        ....+.+++++. ..+++..+.+..+.+|+..+++.+..+
T Consensus        67 ~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d2bbkh_          67 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRML  145 (355)
T ss_dssp             EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC-eeEEecCCCCceeeeeecCCCcEeeEE
Confidence                    458899999999999887765421        122345666542 223344456778999999999988877


Q ss_pred             cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                      ..+....   .+ +.++..+++.+.|++..++..........+.....                                
T Consensus       146 ~~~~~~~---~~-~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~--------------------------------  189 (355)
T d2bbkh_         146 DVPDCYH---IF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF--------------------------------  189 (355)
T ss_dssp             ECCSEEE---EE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC--------------------------------
T ss_pred             ecCCcce---Ee-ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc--------------------------------
Confidence            6543221   11 11122344556676666665543221111110000                                


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  346 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~  346 (441)
                                                       ...+...+....+++++..++.++.++++++|++..++.........
T Consensus       190 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  236 (355)
T d2bbkh_         190 ---------------------------------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA  236 (355)
T ss_dssp             ---------------------------------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES
T ss_pred             ---------------------------------cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC
Confidence                                             00111223344677888889999999999999998765322111100


Q ss_pred             --------EeccCcceEEEeeCCCcEEEEeCC-----------CceEEEEccCCceEeeecccccceEEEEEcCCCCe--
Q 013545          347 --------RLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE--  405 (441)
Q Consensus       347 --------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~--  405 (441)
                              .........+++++++..+++...           ..+.+||..+++.+.++..+ ..+.+++|||||+.  
T Consensus       237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l  315 (355)
T d2bbkh_         237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLL  315 (355)
T ss_dssp             SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEE
T ss_pred             cccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEE
Confidence                    011223345778888887766421           26899999999998887644 55899999999983  


Q ss_pred             EEEeecCCcEEEeCCCCCCCCCcc
Q 013545          406 LYTGGNDRQILVWCPSRHISDGVD  429 (441)
Q Consensus       406 l~s~s~D~~i~vW~~~~~~~~~~~  429 (441)
                      +++++.|++|+|||..+++..+.+
T Consensus       316 ~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         316 YALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCEEEEEECCCCCEEEEE
Confidence            567788999999999999865433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=6.2e-15  Score=135.51  Aligned_cols=274  Identities=10%  Similarity=0.002  Sum_probs=164.9

Q ss_pred             CCCceeEEEccCCCCcEE-EEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           42 HKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        42 H~~~V~~l~~s~~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      +...+.+++|+| +++++ ++++.|+.|.+||+.+++...            .........+...+..++++| ++++++
T Consensus        32 ~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~------------~~~~~~~~~~~~~~~~v~~s~-dg~~l~   97 (337)
T d1pbyb_          32 AGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLG------------RIDLSTPEERVKSLFGAALSP-DGKTLA   97 (337)
T ss_dssp             CTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEE------------EEECCBTTEEEECTTCEEECT-TSSEEE
T ss_pred             CCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEE------------EEecCCCcccccceeeEEEcC-CCcEEE
Confidence            446788999997 57765 788899999999998775321            000011112223344566765 777777


Q ss_pred             EEe------------CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545          121 TGS------------YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (441)
Q Consensus       121 sgs------------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~  188 (441)
                      +++            .+..+.+||..++..+..+.....+..+.+++++.   .+++++  +.+.+||..+++....+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~--~~~~~~d~~~~~~~~~~~~  172 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS---KLYGLG--RDLHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS---CEEEES--SSEEEEETTTTEEEEEECS
T ss_pred             EeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCC---EEEEEc--CCcceeeeecCcEEEEeec
Confidence            665            46789999999999988888777777778887643   455554  5688999999988777765


Q ss_pred             CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG  268 (441)
Q Consensus       189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (441)
                      +... ....+.|++..+...+...+.+..++.....     .....        ..                        
T Consensus       173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------~~------------------------  214 (337)
T d1pbyb_         173 QSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARK-----DIDPA--------DP------------------------  214 (337)
T ss_dssp             TTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT-----TSCTT--------SG------------------------
T ss_pred             CCcc-ccceecCCcceeeccccccceeeeeeeeeee-----cccee--------ee------------------------
Confidence            4332 2233445544322223333333333321000     00000        00                        


Q ss_pred             CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545          269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  348 (441)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~  348 (441)
                          ......+.     ......+.. .......+...+..++++|++.+++++  ++.|++||+.+++...    ... 
T Consensus       215 ----~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~----~~~-  277 (337)
T d1pbyb_         215 ----TAYRTGLL-----TMDLETGEM-AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK----RVP-  277 (337)
T ss_dssp             ----GGEEEEEE-----EEETTTCCE-EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE----EEE-
T ss_pred             ----cccCccEE-----EEEcCCCcE-EEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEE----EEc-
Confidence                00000000     000000000 000122345567888999999998765  5889999999876321    111 


Q ss_pred             ccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc
Q 013545          349 QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG  389 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g  389 (441)
                      ....+..+++++|+..+++++. +.+++||..+++.+.++.-
T Consensus       278 ~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            2445678999999999888755 6799999999998887653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=8.1e-14  Score=128.36  Aligned_cols=233  Identities=13%  Similarity=0.075  Sum_probs=149.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC--
Q 013545          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--  189 (441)
Q Consensus       114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h--  189 (441)
                      .++++|++++.|++|.+||+++++++.+++.+  .....+.++|++.  .+++++..++.|.+||+.+++.+..+...  
T Consensus         6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~--~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~   83 (346)
T d1jmxb_           6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR--TAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   83 (346)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCC--EEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence            47889999999999999999999999888764  3456788888643  45677778999999999999887766432  


Q ss_pred             ----CCCeEEEEEecCCCcEEEEee-----------cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545          190 ----RDGIMTVEWSTSSEWILVTGG-----------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS  254 (441)
Q Consensus       190 ----~~~v~~v~fsp~~~~~l~s~s-----------~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (441)
                          ...+..++|+|++++++++..           .++.+.+||..++.....+.                        
T Consensus        84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------------------  139 (346)
T d1jmxb_          84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR------------------------  139 (346)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE------------------------
T ss_pred             ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE------------------------
Confidence                234568999999987554432           35566666654432110000                        


Q ss_pred             CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545          255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  334 (441)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~  334 (441)
                                                                   .......+..+.+++++..++++   ..+.+|++.
T Consensus       140 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  171 (346)
T d1jmxb_         140 ---------------------------------------------TFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVK  171 (346)
T ss_dssp             ---------------------------------------------EEECCSSCCCEEECTTSCEEEES---SSEEEECTT
T ss_pred             ---------------------------------------------eeeccCceEEEEecCCCEEEEeC---CcceEEEcc
Confidence                                                         00011234456677777766643   458888887


Q ss_pred             CCCceeeeeeeEEeccCcceEEEeeCCCcEEE--------------------------Ee-CCCceEEEEccCCceEe-e
Q 013545          335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVF--------------------------VP-CMTAVKAFDIWSGKTCL-T  386 (441)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~-~~~~~~~wd~~~~~~~~-~  386 (441)
                      +++....    ... ...+....+++++..++                          .. ....+.+|+..++.... .
T Consensus       172 ~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (346)
T d1jmxb_         172 TGKYTVA----LPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE  246 (346)
T ss_dssp             TCCEEEE----ECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred             CCCEEEE----Eec-CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEE
Confidence            7653211    100 01111111111111110                          00 11257788888877554 5


Q ss_pred             ecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          387 FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       387 l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      +..|...+.++.++|++.+++.++. +.|++||+.+++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~  285 (346)
T d1jmxb_         247 FADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLI  285 (346)
T ss_dssp             EEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEE
T ss_pred             eecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEE
Confidence            6778889999999999999987764 57999999888744

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3.8e-13  Score=123.36  Aligned_cols=235  Identities=14%  Similarity=0.217  Sum_probs=154.0

Q ss_pred             EEEEEeCCCcEEEEECCCC---eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec---CCCC
Q 013545          118 LFVTGSYDHYVKVWDTNCT---RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---GHRD  191 (441)
Q Consensus       118 ~l~sgs~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~---~h~~  191 (441)
                      .+++++.|++|++|++...   +.+..+..++.+..++++|++.  .+++++..|+.|++|++........+.   .+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~--~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR--YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS--EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC--EEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            4678889999999998654   3455667788889999999753  455666778999999998765433332   3445


Q ss_pred             CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV  271 (441)
Q Consensus       192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (441)
                      .+..++|+|+++++++++..+++|++|+...........                                         
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~-----------------------------------------  122 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD-----------------------------------------  122 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE-----------------------------------------
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceeccc-----------------------------------------
Confidence            677899999999766555568899999876432211110                                         


Q ss_pred             cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCcEEEeeCCCCCceeeeeee-EEe-
Q 013545          272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVNFET-VRL-  348 (441)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~~wd~~~~~~~~~~~~~-~~~-  348 (441)
                                                  ...+...+.++.|+||++++++++. +..|.+|+............. ... 
T Consensus       123 ----------------------------~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  174 (333)
T d1ri6a_         123 ----------------------------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV  174 (333)
T ss_dssp             ----------------------------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             ----------------------------ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeee
Confidence                                        0122344667899999998877764 456999998775433221111 111 


Q ss_pred             ccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCc----eEeee------cccccceEEEEEcCCCCeEEE-eecCCcE
Q 013545          349 QTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGK----TCLTF------RGHYEYVNCCCFSSQDQELYT-GGNDRQI  415 (441)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~----~~~~l------~gh~~~v~~v~fspd~~~l~s-~s~D~~i  415 (441)
                      ....+..+++.+++..++....  ....+++.....    ....+      .........++++||+++++. +..++++
T Consensus       175 ~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~  254 (333)
T d1ri6a_         175 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI  254 (333)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeE
Confidence            1234556788888887766543  456677653321    11111      122345678999999998765 4557789


Q ss_pred             EEeCCCCC
Q 013545          416 LVWCPSRH  423 (441)
Q Consensus       416 ~vW~~~~~  423 (441)
                      ++|++...
T Consensus       255 ~~~~~~~~  262 (333)
T d1ri6a_         255 TVFSVSED  262 (333)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEcCC
Confidence            99977543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=8.5e-14  Score=130.60  Aligned_cols=293  Identities=11%  Similarity=0.044  Sum_probs=174.2

Q ss_pred             CCCCceeEEEccCCCCcE---EEEeeCCCcEE--EEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545           41 PHKGSINSLQVDLTEERY---LLSGASDSSVA--VYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~---l~s~s~Dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  115 (441)
                      .+.+....++..++ ++.   .++...+++.+  +||..+++...          .  +     .++...  .+.++| |
T Consensus        17 ~~~g~~~~~a~~~~-~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~----------~--~-----~~~~~~--~~a~sp-D   75 (368)
T d1mdah_          17 ASDGSSCDHGPGAI-SRRSHITLPAYFAGTTENWVSCAGCGVTLG----------H--S-----LGAFLS--LAVAGH-S   75 (368)
T ss_dssp             CCCCCCBCCCCCCC-TTEEEEEECTTTCSSEEEEEEETTTTEEEE----------E--E-----EECTTC--EEEECT-T
T ss_pred             ccCCCccccccCCC-CcceeEEeeccCCCcceEEEEeCCCCcEEE----------E--E-----eCCCCC--cceECC-C
Confidence            45566666667654 442   33456667655  45776654210          0  0     111111  355665 7


Q ss_pred             CCEEEEEe----------CCCcEEEEECCCCeEEEEEecCC--------eeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545          116 TGLFVTGS----------YDHYVKVWDTNCTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (441)
Q Consensus       116 ~~~l~sgs----------~D~~i~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl  177 (441)
                      +..++..+          .|++|++||..+++++..+..+.        ....+.+++++.  .++++...++.+.+||+
T Consensus        76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk--~l~va~~~~~~v~~~d~  153 (368)
T d1mdah_          76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSV  153 (368)
T ss_dssp             SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEE
T ss_pred             CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC--EEEEEeCCCCeEEEEEC
Confidence            77776543          47889999999999888776431        123467787653  34444456799999999


Q ss_pred             CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      .+++....+..+....    +.|.++..++..+.||++.+|++..............                       
T Consensus       154 ~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~-----------------------  206 (368)
T d1mdah_         154 PGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC-----------------------  206 (368)
T ss_dssp             TTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS-----------------------
T ss_pred             CCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc-----------------------
Confidence            9999888877655432    2334444677888999999998765321111000000                       


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                ...+...+..+.+.+++..+.+.  ++.++++++....
T Consensus       207 ------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~  242 (368)
T d1mdah_         207 ------------------------------------------TGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAG  242 (368)
T ss_dssp             ------------------------------------------CTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSC
T ss_pred             ------------------------------------------ccccccceeecccccCcEEEEec--CCCEEEEeecCCc
Confidence                                                      00011122234555555544433  3445555544332


Q ss_pred             ceeeeee--------eEEeccCcceEEEeeCCCcEEEEeCC----------CceEEEEccCCceEeeecccccceEEEEE
Q 013545          338 NTLVNFE--------TVRLQTSKPIQLATTQDPAVVFVPCM----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCF  399 (441)
Q Consensus       338 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~wd~~~~~~~~~l~gh~~~v~~v~f  399 (441)
                      .......        ...........+++++++..+++...          ..+.+||..+++.+.++.. ...+..++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~  321 (368)
T d1mdah_         243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIA  321 (368)
T ss_dssp             CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEE
T ss_pred             eEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEE
Confidence            2111000        00011223345677888887766421          2588999999999888774 467899999


Q ss_pred             cCCCCe--EEEeecCCcEEEeCCCCCCCCCc
Q 013545          400 SSQDQE--LYTGGNDRQILVWCPSRHISDGV  428 (441)
Q Consensus       400 spd~~~--l~s~s~D~~i~vW~~~~~~~~~~  428 (441)
                      ||||+.  +++++.|++|++||..+++..+.
T Consensus       322 spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         322 AQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             CCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            999974  45778899999999999885443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=3.2e-12  Score=118.29  Aligned_cols=278  Identities=12%  Similarity=0.006  Sum_probs=160.1

Q ss_pred             CceeEEEccCCCCcEEEE----------eeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545           44 GSINSLQVDLTEERYLLS----------GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (441)
Q Consensus        44 ~~V~~l~~s~~~~~~l~s----------~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~  113 (441)
                      +.+..++||| ++++|+.          ++.|+.|++||+.+++...         . +................+.+++
T Consensus        47 g~~~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~---------~-~~~~~~~~~~~~~~~~~~~~s~  115 (355)
T d2bbkh_          47 GFLPNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA---------D-IELPDAPRFLVGTYPWMTSLTP  115 (355)
T ss_dssp             CSSCEEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE---------E-EEETTCCCCCBSCCGGGEEECT
T ss_pred             CCCCceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEE---------E-EecCCcceeecCCCCceEEEec
Confidence            4455799997 5666654          3458999999998765311         0 1111111111122233456665


Q ss_pred             CCCCEEEEE--eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-----
Q 013545          114 VDTGLFVTG--SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-----  186 (441)
Q Consensus       114 ~~~~~l~sg--s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-----  186 (441)
                       ++.+++.+  +.+..+.+||..+++.+..+..+.......   ..  .....+.+.|+...++..........+     
T Consensus       116 -dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~  189 (355)
T d2bbkh_         116 -DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP---TA--PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF  189 (355)
T ss_dssp             -TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE---EE--TTEEEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred             -CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEee---cC--CcceEEEcCCCCEEEEEecCCCeEEEEecccc
Confidence             77776655  456789999999999888777654332211   11  112233345555555554433222111     


Q ss_pred             -cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          187 -SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       187 -~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                       ..+...+....+.+++.. ++.++.++.+.+|++..+.... +.....                               
T Consensus       190 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-------------------------------  236 (355)
T d2bbkh_         190 HPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKF-LPAVEA-------------------------------  236 (355)
T ss_dssp             SCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCEE-CCCEES-------------------------------
T ss_pred             cceecceeeeccccCCCCe-EEEecCCCeEEEEecCCCcEEE-EeccCC-------------------------------
Confidence             133444556677777664 6778899999999987653211 100000                               


Q ss_pred             CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC----------CcEEEeeCCC
Q 013545          266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD----------SRIRLWDVES  335 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----------~~i~~wd~~~  335 (441)
                                        .......         ..........+++++++..++..+.+          .+|.+||+.+
T Consensus       237 ------------------~~~~~~~---------~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t  289 (355)
T d2bbkh_         237 ------------------LTEAERA---------DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  289 (355)
T ss_dssp             ------------------SCHHHHH---------TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             ------------------cccceEe---------eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence                              0000000         00011223457889999887765544          3699999998


Q ss_pred             CCceeeeeeeEEeccCcceEEEeeCCCcE-EEEe-C-CCceEEEEccCCceEeeecccccceEEEEEcCCC
Q 013545          336 GRNTLVNFETVRLQTSKPIQLATTQDPAV-VFVP-C-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD  403 (441)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~  403 (441)
                      ++... .+   . ....+..+++++|++. +++. . ...+.+||+.+++.+.++.++...-.++.+.++|
T Consensus       290 ~~~~~-~~---~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         290 GERLA-KF---E-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             CCEEE-EE---E-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CcEEE-Ee---c-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            76421 11   1 1233557889999974 4433 3 3689999999999999998887666666666543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.45  E-value=2.8e-10  Score=105.83  Aligned_cols=283  Identities=12%  Similarity=-0.025  Sum_probs=164.7

Q ss_pred             eeEEEccCCCCcEEEEee----------CCCcEEEEECCCCcccCCCCceeccc-eeEEeecccccCcccceeEEEEeeC
Q 013545           46 INSLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHR-SVFVVDKQHEHGHKYAISSAIWYPV  114 (441)
Q Consensus        46 V~~l~~s~~~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~~~  114 (441)
                      ...++|+| ++++|+.++          .++.|++||..+++....   +.... .....     ..+   ...+.+++ 
T Consensus        68 ~~~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~-----~~~---~~~~~~s~-  134 (373)
T d2madh_          68 LPNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDV-----GPY---SWMNANTP-  134 (373)
T ss_pred             CccEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEE---EecCCcceeEe-----ccC---CCcEEEEe-
Confidence            34789997 577887764          468899999987653210   00000 00000     001   12345555 


Q ss_pred             CCCEEEEE--eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC---
Q 013545          115 DTGLFVTG--SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH---  189 (441)
Q Consensus       115 ~~~~l~sg--s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h---  189 (441)
                      ++..++..  ..+..+.+|+....+.......   .....+++++  ..++++.+.|+.+.+|+..+++.......+   
T Consensus       135 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~g--~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~  209 (373)
T d2madh_         135 NNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS---PTCYHIHPGA--PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT  209 (373)
T ss_pred             CCCcEEEEEEcCCCceEEeeccCCeEEEEecc---ceeEEEecCC--CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc
Confidence            55554433  4467899999988776655443   3345566654  346778889999999999998876654332   


Q ss_pred             ---CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545          190 ---RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA  266 (441)
Q Consensus       190 ---~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (441)
                         ......+.+.+++.  ++..+.++++.+|+............... ..              ..             
T Consensus       210 ~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~--------------~~-------------  259 (373)
T d2madh_         210 AAQNLLTQPAQANKSGR--IVWPVYSGKILQADISAAGATNKAPIDAL-SG--------------GR-------------  259 (373)
T ss_pred             cCccceeeeEEECCCce--EEEecCCceEEEEEcCCCeEEEEEeeccc-cC--------------cE-------------
Confidence               22234455666543  45677899999999876532211100000 00              00             


Q ss_pred             CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545          267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  346 (441)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~  346 (441)
                                        ......+..   ......+.+.-....+.+++..+++...++++.+||..+++...    .+
T Consensus       260 ------------------~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~----~~  314 (373)
T d2madh_         260 ------------------KADTWRPGG---WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS----QI  314 (373)
T ss_pred             ------------------EeeeeccCc---ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE----Ee
Confidence                              000000000   00000111111122344555667778888999999999876421    11


Q ss_pred             EeccCcceEEEeeCCCcEE-E-EeCC-CceEEEEccCCceEeeecccccceEEEEEcCC
Q 013545          347 RLQTSKPIQLATTQDPAVV-F-VPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ  402 (441)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd  402 (441)
                       .....+..+++++|++.+ + +.+. ..+++||+.+++.+.++.+|......|++-++
T Consensus       315 -~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         315 -SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             -cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence             123456678999999854 3 3333 58999999999999999998888888877654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.39  E-value=1.6e-11  Score=118.65  Aligned_cols=152  Identities=11%  Similarity=0.145  Sum_probs=106.6

Q ss_pred             EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC---
Q 013545           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY---  124 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~---  124 (441)
                      .+.|.+ +++++.  ..|+.|.+||+.+++..            .+++......|...|.+..|+| |+++||.++.   
T Consensus        21 ~~~W~~-d~~~~~--~~~~~~~~~~~~t~~~~------------~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~   84 (470)
T d2bgra1          21 SLRWIS-DHEYLY--KQENNILVFNAEYGNSS------------VFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVK   84 (470)
T ss_dssp             CCEECS-SSEEEE--ESSSCEEEEETTTCCEE------------EEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEE
T ss_pred             CCEeCC-CCEEEE--EcCCcEEEEECCCCCEE------------EEEchhhhhhccCccceeEECC-CCCEEEEEECCcc
Confidence            467874 566665  35889999999877531            2234455667888899999987 8999988754   


Q ss_pred             ------CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC---------
Q 013545          125 ------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH---------  189 (441)
Q Consensus       125 ------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h---------  189 (441)
                            ++.+.+||+++++.......++.+....|+|++.   .+|.. .++.+.+|++.+++..+....+         
T Consensus        85 ~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~---~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~  160 (470)
T d2bgra1          85 QWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI  160 (470)
T ss_dssp             CSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred             eeeeccCceEEEEECCCCcccccccCCccccccccccCcc---eeeEe-ecccceEEECCCCceeeeeeccCCCcccccc
Confidence                  5678899999988654334556678888999764   45554 4678999999998765543222         


Q ss_pred             ---------CCCeEEEEEecCCCcEEEEeecC-CcEEEEEc
Q 013545          190 ---------RDGIMTVEWSTSSEWILVTGGCD-GAIRFWDI  220 (441)
Q Consensus       190 ---------~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~  220 (441)
                               .+....+.|||||+++ +....| ..++.|++
T Consensus       161 ~d~~~~~~~~~~~~~~~wSPDGk~i-a~~~~d~~~v~~~~~  200 (470)
T d2bgra1         161 TDWVYEEEVFSAYSALWWSPNGTFL-AYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTSSEE-EEEEEECTTCCEEEE
T ss_pred             cceeeeeeecCCccccEECCCCCcc-ceeEecCCcCceEEE
Confidence                     2334568899999964 555554 44776654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.38  E-value=6.4e-12  Score=118.40  Aligned_cols=317  Identities=10%  Similarity=0.000  Sum_probs=166.0

Q ss_pred             EEEeeCCCcEEEEECCCCcccCCCCceec-----------cceeEEee--cccccCcccceeEEEEeeCCCCEE-EEEeC
Q 013545           59 LLSGASDSSVAVYDVQRATDYEGGGHIAK-----------HRSVFVVD--KQHEHGHKYAISSAIWYPVDTGLF-VTGSY  124 (441)
Q Consensus        59 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~  124 (441)
                      ++||+.+|+|++||+.+++.+........           .+.++...  ......|.-........+ ||.+| ++...
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA   92 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence            68999999999999976653221100000           00000000  000112332232222333 67776 45567


Q ss_pred             CCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCC-----------------cEEEEECCCCceeee
Q 013545          125 DHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDV-----------------QVRLCDIASGAISQT  185 (441)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~-----------------~I~vwdl~~~~~~~~  185 (441)
                      +.+|.+||+.++++...+..  ......+.+++++... +++..+.+.                 .+..+|.++.+....
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~-YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTN-YVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCC-EEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEE-EEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            89999999999998776654  3456778888876533 344333321                 235588888777666


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS  265 (441)
Q Consensus       186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (441)
                      +.-. .....++|+|++++.++++.....+..+|..+.+....+.....     + ....  .                .
T Consensus       172 I~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~-----p-~~~~--~----------------~  226 (441)
T d1qnia2         172 VIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV-----E-RIAA--A----------------V  226 (441)
T ss_dssp             EEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH-----H-HHHH--H----------------H
T ss_pred             EecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc-----c-ceEE--E----------------e
Confidence            5532 35688999999998766654444444444333322111100000     0 0000  0                0


Q ss_pred             CCCCCccccCccccc----CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCcee
Q 013545          266 ANGNGVRQSSVGRIP----AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       266 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~~~  340 (441)
                      ++|........+...    ....+...           .... .....+.++|||+++ +++..+++|.+||+++.+..+
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~-----------IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~  294 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRY-----------IPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF  294 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEE-----------ECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEE-----------EeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHh
Confidence            000000000000000    00000000           0111 224568999999986 678899999999987532100


Q ss_pred             -------eeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccC------C----ceEeee-----cccccceEEE
Q 013545          341 -------VNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWS------G----KTCLTF-----RGHYEYVNCC  397 (441)
Q Consensus       341 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~------~----~~~~~l-----~gh~~~v~~v  397 (441)
                             ..+.......-.+....+.+++....+.. ...+..|++..      +    .....+     .||...+.+.
T Consensus       295 ~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~  374 (441)
T d1qnia2         295 EDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTE  374 (441)
T ss_dssp             TTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT
T ss_pred             hccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccccc
Confidence                   00111111112344556777765443332 36889999631      1    122222     6999999999


Q ss_pred             EEcCCCCeEEEe---ecCCc
Q 013545          398 CFSSQDQELYTG---GNDRQ  414 (441)
Q Consensus       398 ~fspd~~~l~s~---s~D~~  414 (441)
                      +|+|||+||+|+   |.|+-
T Consensus       375 t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         375 SRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             STTCCCCEEEEEESCCGGGS
T ss_pred             ccCCCCcEEEecCccccccC
Confidence            999999999999   66643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.18  E-value=5.9e-11  Score=111.75  Aligned_cols=235  Identities=11%  Similarity=-0.009  Sum_probs=141.1

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCC------------------------------e-eEEEeeccCCCCccEEEEEe
Q 013545          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPG------------------------------K-VYRTAMSPLAASHMLIAAGT  167 (441)
Q Consensus       119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~------------------------------~-~~~~~~~~~~~~~~~las~s  167 (441)
                      |+|++.+|+|++||+.+++.+..+..-.                              + ...+..+++  +..++++..
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD--Gr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD--GKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE--EEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCC--CCEEEEEcC
Confidence            6799999999999999999888764310                              0 111112233  234556777


Q ss_pred             CCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEE------EEcCCC-ceeeEeccCCccccCC
Q 013545          168 EDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRF------WDIRRA-GCFRVLDQSQSQLGRR  239 (441)
Q Consensus       168 ~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~i------WD~~~~-~~~~~~~~~~~~~~~~  239 (441)
                      .++.|.++|+++.+..+.+. .+...+..++|+|+++...+.+..+..+.+      |+.... ..+..++...      
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t------  165 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET------  165 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT------
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc------
Confidence            88999999999999877664 456778999999998865555554444433      110000 0000000000      


Q ss_pred             CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545          240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  319 (441)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  319 (441)
                                                                 ..+..+           . .-.+.+..++|+|||+++
T Consensus       166 -------------------------------------------~~v~~q-----------I-~v~~~p~~v~~spdGk~a  190 (441)
T d1qnia2         166 -------------------------------------------MDVAWQ-----------V-IVDGNLDNTDADYTGKYA  190 (441)
T ss_dssp             -------------------------------------------CSEEEE-----------E-EESSCCCCEEECSSSSEE
T ss_pred             -------------------------------------------ceeeEE-----------E-ecCCCccceEECCCCCEE
Confidence                                                       000000           0 011235678999999998


Q ss_pred             EEeecCC-cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEE
Q 013545          320 LSAGSDS-RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC  398 (441)
Q Consensus       320 ~sgs~D~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~  398 (441)
                      .+++.+. .+..++..+.+..- ....    .+.+....+.++++.+..+..+.+.+++....+.+..+..+.. ...++
T Consensus       191 ~vt~~nse~~~~id~~t~~~~d-~i~v----~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~  264 (441)
T d1qnia2         191 TSTCYNSERAVDLAGTMRNDRD-WVVV----FNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLN  264 (441)
T ss_dssp             EEEESCTTCCSSHHHHTCSSBC-EEEE----EEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEE
T ss_pred             EEEecCCCceEEEeccCcceEE-EEEe----CCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCce
Confidence            8877664 34444443332211 0111    1122233455677766554445555665666667777777665 57899


Q ss_pred             EcCCCCeEE-EeecCCcEEEeCCCC
Q 013545          399 FSSQDQELY-TGGNDRQILVWCPSR  422 (441)
Q Consensus       399 fspd~~~l~-s~s~D~~i~vW~~~~  422 (441)
                      +||||++++ ++..|++|.|||+.+
T Consensus       265 vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         265 TSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             ECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             ECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            999999865 678899999999763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=4e-09  Score=98.00  Aligned_cols=262  Identities=8%  Similarity=-0.052  Sum_probs=150.7

Q ss_pred             eEEEccCCCCcEEEEe----------eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545           47 NSLQVDLTEERYLLSG----------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (441)
Q Consensus        47 ~~l~~s~~~~~~l~s~----------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  116 (441)
                      ..++|+| ++++|+..          +.|++|++||..+++...          .+................+.+++ |+
T Consensus        68 ~~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~----------~i~~p~~~~~~~g~~p~~~a~Sp-DG  135 (368)
T d1mdah_          68 SLAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA----------DIELPDAPRFSVGPRVHIIGNCA-SS  135 (368)
T ss_dssp             CEEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE----------EEEETTSCSCCBSCCTTSEEECT-TS
T ss_pred             CcceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcEee----------eecCCccceecccCCccceEECC-CC
Confidence            4588987 57777654          458899999998765311          00000000000111122356665 78


Q ss_pred             CEEEEEe-CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee------eecCC
Q 013545          117 GLFVTGS-YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ------TLSGH  189 (441)
Q Consensus       117 ~~l~sgs-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~------~l~~h  189 (441)
                      ++++.+. .++++.+||+.+++.+..+..++..   .+.+..  ...+++.+.|+.+.++++.......      .+..+
T Consensus       136 k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~--~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---HIHPGA--AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---CCEEEE--TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---eEccCC--CceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence            8887665 5799999999999998877765432   122222  2356667889999999987654322      23345


Q ss_pred             CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN  269 (441)
Q Consensus       190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (441)
                      ...+..+.+.+++. .+.  ...+.+.++++..+........ ..                                   
T Consensus       211 ~~~~~~~~~~~~g~-~~~--~~~~~v~~~~~~~~~~~~~~~~-~~-----------------------------------  251 (368)
T d1mdah_         211 NCSSQAAQANYPGM-LVW--AVASSILQGDIPAAGATMKAAI-DG-----------------------------------  251 (368)
T ss_dssp             CBCSCCEEETTTTE-EEE--CBSSCCEEEECCSSCCEEECCC-CS-----------------------------------
T ss_pred             ccceeecccccCcE-EEE--ecCCCEEEEeecCCceEEEeec-cc-----------------------------------
Confidence            55566778888764 333  3456788888764322111000 00                                   


Q ss_pred             CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---------CcEEEeeCCCCCcee
Q 013545          270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---------SRIRLWDVESGRNTL  340 (441)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---------~~i~~wd~~~~~~~~  340 (441)
                                    .......         .....+....++++|++..+.....+         .+|.+||..+++...
T Consensus       252 --------------~~~~~~~---------~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~  308 (368)
T d1mdah_         252 --------------NESGRKA---------DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             --------------SCTHHHH---------TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             --------------ccceeee---------eeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence                          0000000         00011112346788887765443222         359999999886421


Q ss_pred             eeeeeEEeccCcceEEEeeCCCc-EEEEe--CCCceEEEEccCCceEeeeccccc
Q 013545          341 VNFETVRLQTSKPIQLATTQDPA-VVFVP--CMTAVKAFDIWSGKTCLTFRGHYE  392 (441)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~  392 (441)
                       .+.   . ...+..+++++|++ ++++.  ....+++||..+++.+.++.....
T Consensus       309 -~~~---~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~  358 (368)
T d1mdah_         309 -PIS---N-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             -CCE---E-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             -Eec---C-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC
Confidence             111   1 12345688999986 44443  236899999999999998876544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=3.3e-09  Score=102.09  Aligned_cols=113  Identities=6%  Similarity=-0.045  Sum_probs=82.5

Q ss_pred             eccCeEEEEEccCCCEEEEeec---------CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCce
Q 013545          303 HYGAVTGLKVTEDGMYLLSAGS---------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAV  373 (441)
Q Consensus       303 h~~~v~~l~~s~dg~~l~sgs~---------D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (441)
                      |...|.++.|||||++|+.++.         ++.+.+||+.+++..     .+...........++|||..++......+
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-----~l~~~~~~~~~~~~SPDG~~ia~~~~~~l  134 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-----TEERIPNNTQWVTWSPVGHKLAYVWNNDI  134 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-----CSSCCCTTEEEEEECSSTTCEEEEETTEE
T ss_pred             ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-----ccccCCccccccccccCcceeeEeecccc
Confidence            4556889999999999998754         567889999987531     11223344567889999999988888899


Q ss_pred             EEEEccCCceEeeeccc------------------ccceEEEEEcCCCCeEEEeecCCc-EEEeCC
Q 013545          374 KAFDIWSGKTCLTFRGH------------------YEYVNCCCFSSQDQELYTGGNDRQ-ILVWCP  420 (441)
Q Consensus       374 ~~wd~~~~~~~~~l~gh------------------~~~v~~v~fspd~~~l~s~s~D~~-i~vW~~  420 (441)
                      .+|+..+++.......+                  .+....+.|||||++|+....|.+ ++.|.+
T Consensus       135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            99999888766543222                  223466889999999999877654 555543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.85  E-value=7.3e-07  Score=82.34  Aligned_cols=119  Identities=11%  Similarity=0.064  Sum_probs=74.7

Q ss_pred             CeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCceee-eeeeEEecc--------------CcceEEEeeCCCcEEEEeC
Q 013545          306 AVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLV-NFETVRLQT--------------SKPIQLATTQDPAVVFVPC  369 (441)
Q Consensus       306 ~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~  369 (441)
                      ..+.++|+|+++++ ++.-.+++|.+|++...+.... .........              ..+..+.++|+++.+++..
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            36789999999976 5566789999999977543221 111111100              1133577899999998864


Q ss_pred             CC-------ceEEEEccCCceEe-e-----ecccccceEEEEEcC-CCCeEEEe-ecCCcEEEeCCCCCC
Q 013545          370 MT-------AVKAFDIWSGKTCL-T-----FRGHYEYVNCCCFSS-QDQELYTG-GNDRQILVWCPSRHI  424 (441)
Q Consensus       370 ~~-------~~~~wd~~~~~~~~-~-----l~gh~~~v~~v~fsp-d~~~l~s~-s~D~~i~vW~~~~~~  424 (441)
                      ..       .+-.|++.....+. .     .....+...+++|+| +|++|+.+ ..+++|.+|+.+...
T Consensus       274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            31       26666664422221 1     112234567899998 89987655 667899999876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=7.3e-06  Score=72.31  Aligned_cols=241  Identities=12%  Similarity=0.183  Sum_probs=147.9

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-------eEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-------VYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~las~s~d~~I~vwdl~  178 (441)
                      ...+++.+ +++++++-...+.|++||.. +..+..+...+.       ...+.+... ....+++..+.++.|.+++. 
T Consensus        25 P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          25 PSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             EEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEECT-
T ss_pred             ccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccc-ccccceeccCCccccccccc-
Confidence            34566765 68888887788999999965 666666642211       122222221 22234444455667888876 


Q ss_pred             CCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545          179 SGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK  257 (441)
Q Consensus       179 ~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (441)
                      .++....+. ........+++.+++. ++++....+.+.++|.. ++.+..+.                           
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g---------------------------  151 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFG---------------------------  151 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEE---------------------------
T ss_pred             cccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-Cceeeccc---------------------------
Confidence            455555543 3455677888888876 45554555556666532 11111110                           


Q ss_pred             CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545          258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  337 (441)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~  337 (441)
                                                                ...+......+++.+++..+++....++|++||.... 
T Consensus       152 ------------------------------------------~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-  188 (279)
T d1q7fa_         152 ------------------------------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-  188 (279)
T ss_dssp             ------------------------------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-
T ss_pred             ------------------------------------------ccccccccceeeeccceeEEeeeccccceeeeecCCc-
Confidence                                                      0012234677899999999999999999999997642 


Q ss_pred             ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC--ceEEEEccCCceEeeecccc--cceEEEEEcCCCCeEEEeecCC
Q 013545          338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT--AVKAFDIWSGKTCLTFRGHY--EYVNCCCFSSQDQELYTGGNDR  413 (441)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~wd~~~~~~~~~l~gh~--~~v~~v~fspd~~~l~s~s~D~  413 (441)
                      . +..+.. ......|..+++.+++.++++....  .+.+|+. +|+.+.++....  .....|++.|||..++ ++.+.
T Consensus       189 ~-~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~  264 (279)
T d1q7fa_         189 Y-LRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDY  264 (279)
T ss_dssp             E-EEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTT
T ss_pred             e-eeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCC
Confidence            1 111110 0122346677888999877665432  4777774 688777765433  3578999999997655 45788


Q ss_pred             cEEEeCCCCCCCC
Q 013545          414 QILVWCPSRHISD  426 (441)
Q Consensus       414 ~i~vW~~~~~~~~  426 (441)
                      .|++|....-...
T Consensus       265 ~v~~fr~~~~~~~  277 (279)
T d1q7fa_         265 RLYIYRYVQLAPV  277 (279)
T ss_dssp             EEEEEECSCCCCT
T ss_pred             eEEEEEeeeecCC
Confidence            9999987765443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.60  E-value=8.7e-05  Score=65.92  Aligned_cols=236  Identities=14%  Similarity=0.075  Sum_probs=142.1

Q ss_pred             eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-ee
Q 013545          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQ  184 (441)
Q Consensus       106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~  184 (441)
                      +..+++.+ ||.++++...+++|..||.. +.........+....+++.+++   .++++...++.+..++...... ..
T Consensus        30 ~e~iAv~p-dG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG---~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          30 LENLASAP-DGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNG---DLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             EEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTS---CEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             cCCEEECC-CCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCC---CeEEEecCCceEEEEEeccccccee
Confidence            44567766 78999999999999999865 4444445667778888888754   3677777788888888755432 11


Q ss_pred             ee--cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          185 TL--SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       185 ~l--~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      .+  .........+.+.+++. ++++-+.++.+..+|...+.....+.......                          
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------------------  157 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR--------------------------  157 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSC--------------------------
T ss_pred             eccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccce--------------------------
Confidence            11  12345578899999986 56777778888888876543211110000000                          


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  342 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~  342 (441)
                                                         ............+.++. +..+++.+..++|..+++........ 
T Consensus       158 -----------------------------------~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~-  200 (302)
T d2p4oa1         158 -----------------------------------SNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGE-  200 (302)
T ss_dssp             -----------------------------------SSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCC-
T ss_pred             -----------------------------------eeccCcccccccccccC-CceeeecCCCCeEEeccccccccccc-
Confidence                                               00000112345666654 34566778888999888875432111 


Q ss_pred             eeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCc-eEeeecccccceEEEEE---cCCCCeEEEeec
Q 013545          343 FETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGK-TCLTFRGHYEYVNCCCF---SSQDQELYTGGN  411 (441)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~-~~~~l~gh~~~v~~v~f---spd~~~l~s~s~  411 (441)
                      . ........+--+++.+++.+.++.. ...+..++..... .+......-...++++|   +||++.|+.++.
T Consensus       201 ~-~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         201 P-EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             C-EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             c-ccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            1 1111233445678889998665543 3567777654322 23333434456899999   788888875443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=1.6e-05  Score=69.20  Aligned_cols=153  Identities=14%  Similarity=0.053  Sum_probs=84.3

Q ss_pred             eEEEccCCCCc-EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC
Q 013545           47 NSLQVDLTEER-YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (441)
Q Consensus        47 ~~l~~s~~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D  125 (441)
                      ..|++++ +++ +++..+..+.|..++.......             .....   +. .....+++.+ ++.++++....
T Consensus        17 ~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~-------------~~~~~---~~-~~p~gvav~~-~g~i~v~d~~~   77 (260)
T d1rwia_          17 SGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-------------VLPFN---GL-YQPQGLAVDG-AGTVYVTDFNN   77 (260)
T ss_dssp             EEEEECT-TCCEEEEECSSSCEEEEEC----CEE-------------ECCCC---SC-CSCCCEEECT-TCCEEEEETTT
T ss_pred             CEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEE-------------EeccC---Cc-cCceEEEEcC-CCCEEEeeeee
Confidence            5889986 465 4555667777777765432110             00000   00 1122355554 67788877777


Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI  205 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~  205 (441)
                      +.+++++-.+...+.....-.....+++.+..   .+.++-..+..+..++............-.....++++.|++. +
T Consensus        78 ~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~  153 (260)
T d1rwia_          78 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG---AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V  153 (260)
T ss_dssp             EEEEECTTCSCCEECCCCSCCSEEEEEECTTC---CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-E
T ss_pred             ceeeeeeeccceeeeeeeeeeecccccccccc---eeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-E
Confidence            77777765555443222222234555555532   3455445556677777655443222222234457899999886 6


Q ss_pred             EEEeecCCcEEEEEcCC
Q 013545          206 LVTGGCDGAIRFWDIRR  222 (441)
Q Consensus       206 l~s~s~Dg~I~iWD~~~  222 (441)
                      +++...++.|..+|...
T Consensus       154 ~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             EEEEGGGTEEEEECTTT
T ss_pred             eeecccccccccccccc
Confidence            77777778888888653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.44  E-value=0.00025  Score=63.28  Aligned_cols=115  Identities=10%  Similarity=0.164  Sum_probs=76.4

Q ss_pred             CeEEEEEccCCC-----EEEEeecCCcEEEeeCCCCCceeeeeeeE-Ee---ccCcceEEEeeCCCcEEEEe-CCCceEE
Q 013545          306 AVTGLKVTEDGM-----YLLSAGSDSRIRLWDVESGRNTLVNFETV-RL---QTSKPIQLATTQDPAVVFVP-CMTAVKA  375 (441)
Q Consensus       306 ~v~~l~~s~dg~-----~l~sgs~D~~i~~wd~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~  375 (441)
                      ..+.++|+|++.     ++++-+..++|..||+..... ....... .+   ....+--+++..++.+.++. ....|.+
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE-EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccc-cceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            356889999874     566778889999998764321 1111110 11   11224456777888865543 4567999


Q ss_pred             EEccCCceEeeecccccceEEEEEcCCCCe-EEEeecCCcEEEeCCC
Q 013545          376 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPS  421 (441)
Q Consensus       376 wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~  421 (441)
                      ||...++....+..+.....+|+|.||++. ++|.+.++.|...+++
T Consensus       252 ~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            998888777777776678899999999975 4676777777665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.41  E-value=2.5e-05  Score=69.63  Aligned_cols=199  Identities=11%  Similarity=0.065  Sum_probs=121.6

Q ss_pred             eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-ee
Q 013545          148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CF  226 (441)
Q Consensus       148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~  226 (441)
                      +..+++.+++   .++++...++.|..+|....  ...+......+.+++|.|+++ ++++...++.+..|+..... ..
T Consensus        30 ~e~iAv~pdG---~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          30 LENLASAPDG---TIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             EEEEEECTTS---CEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCE
T ss_pred             cCCEEECCCC---CEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccce
Confidence            4456777754   47778888898988886543  334445667889999999997 67777778888888754311 00


Q ss_pred             eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC
Q 013545          227 RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA  306 (441)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  306 (441)
                      ..+.                                                                     .......
T Consensus       104 ~~~~---------------------------------------------------------------------~~~~~~~  114 (302)
T d2p4oa1         104 ETLL---------------------------------------------------------------------TLPDAIF  114 (302)
T ss_dssp             EEEE---------------------------------------------------------------------ECTTCSC
T ss_pred             eecc---------------------------------------------------------------------ccCCccc
Confidence            0000                                                                     0001234


Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE---Ee-c--cCcceEEEeeCCCcEEEEeCC--CceEEEEc
Q 013545          307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV---RL-Q--TSKPIQLATTQDPAVVFVPCM--TAVKAFDI  378 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~  378 (441)
                      .+.+++.++|+++++.+.++.+..+|...+..........   .. .  ...+.-+..  ++..++....  ..+..+++
T Consensus       115 ~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~  192 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPV  192 (302)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEB
T ss_pred             cceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeecCCCCeEEeccc
Confidence            6789999999999999999999999887654221110000   00 0  011122222  3344444433  45555665


Q ss_pred             cCCceEee--ecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          379 WSGKTCLT--FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       379 ~~~~~~~~--l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      ........  ...+......++|.+||+++++...++.|..++++..
T Consensus       193 ~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         193 DSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             CTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             cccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            44322211  1122344678999999998888888999999998754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=0.0001  Score=63.85  Aligned_cols=224  Identities=12%  Similarity=0.091  Sum_probs=121.5

Q ss_pred             cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe-CC--CcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT-ED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (441)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s-~d--~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~  203 (441)
                      .|.|-|...............+....++|++.   .||-.. .+  ..+.+.+..++.. ..+..+........|+|+++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk---~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSS---EEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCC---EEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCC
Confidence            45555665444444445566677888999864   344332 22  2466667766654 34556778888999999999


Q ss_pred             cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG  283 (441)
Q Consensus       204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (441)
                      .++.....++...++..........                                                       
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  120 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIR-------------------------------------------------------  120 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEE-------------------------------------------------------
T ss_pred             eeeEeeecCCccceeecccccccce-------------------------------------------------------
Confidence            7655444444444433221000000                                                       


Q ss_pred             CcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCc--EEEeeCCCCCceeeeeeeEEeccCcceEEEeeC
Q 013545          284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSR--IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ  360 (441)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (441)
                                     .............+++++..+ ++...++.  |.+.++........     ...........+++
T Consensus       121 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~sp  180 (269)
T d2hqsa1         121 ---------------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-----TWEGSQNQDADVSS  180 (269)
T ss_dssp             ---------------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-----CCSSSEEEEEEECT
T ss_pred             ---------------eeeeccccccccccccccccceecccccCCceEeeeecccccceee-----eccccccccccccc
Confidence                           000011112234466666543 33444444  44555555432111     11122233457788


Q ss_pred             CCcEEEEeCC--CceEE--EEccCCceEeeecccccceEEEEEcCCCCeEEEeec---CCcEEEeCCCCCCCCCccCC
Q 013545          361 DPAVVFVPCM--TAVKA--FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN---DRQILVWCPSRHISDGVDAG  431 (441)
Q Consensus       361 ~~~~~~~~~~--~~~~~--wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~---D~~i~vW~~~~~~~~~~~~~  431 (441)
                      ++..++....  +...+  .+...+..  .+..+........|||||++|+-.+.   ...|.+++++++....+...
T Consensus       181 dg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~  256 (269)
T d2hqsa1         181 DGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT  256 (269)
T ss_dssp             TSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred             ccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC
Confidence            8887766432  33344  44444433  33445566788899999999874333   34688999988776555554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.24  E-value=0.0016  Score=59.05  Aligned_cols=181  Identities=9%  Similarity=0.063  Sum_probs=99.7

Q ss_pred             eeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Ccee--eee--cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAIS--QTL--SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       147 ~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~--~~l--~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      ++..+.++|++.  .++++......|.+|+... +...  ..+  .........+.|+|+++++.++.-.+++|.+||+.
T Consensus       146 h~h~v~~sPdG~--~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTET--YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCC--EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            466788888643  3444444456788887654 3322  111  23346788999999999877888789999999987


Q ss_pred             CCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccce
Q 013545          222 RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT  301 (441)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (441)
                      ..+............            .        ..                                ..........
T Consensus       224 ~~~~~~~~~~~~~~~------------~--------~~--------------------------------~~~~~~~~~~  251 (365)
T d1jofa_         224 PATHMPVYTHHSFPL------------I--------PP--------------------------------GIPDRDPETG  251 (365)
T ss_dssp             TTTCCEEEEEEEEES------------S--------CT--------------------------------TCCCBCTTTS
T ss_pred             CCCceEEEEeeeecc------------c--------cc--------------------------------cccccccccc
Confidence            543221111000000            0        00                                0000000001


Q ss_pred             eeccCeEEEEEccCCCEEEEeec-CC-----cEEEeeCCCCCceeeeeeeEE--eccCcceEEEeeC-CCcEEEEeCC--
Q 013545          302 AHYGAVTGLKVTEDGMYLLSAGS-DS-----RIRLWDVESGRNTLVNFETVR--LQTSKPIQLATTQ-DPAVVFVPCM--  370 (441)
Q Consensus       302 ~h~~~v~~l~~s~dg~~l~sgs~-D~-----~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~--  370 (441)
                      .+......+.++|||++|.++.. +.     .|..|++..............  .....+..+++++ ++++++++..  
T Consensus       252 ~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s  331 (365)
T d1jofa_         252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE  331 (365)
T ss_dssp             SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred             cccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC
Confidence            12233567899999999876532 22     376777654321111111011  1123456678887 7888887754  


Q ss_pred             CceEEEEccCC
Q 013545          371 TAVKAFDIWSG  381 (441)
Q Consensus       371 ~~~~~wd~~~~  381 (441)
                      ..+.+|++...
T Consensus       332 ~~v~v~~~~~~  342 (365)
T d1jofa_         332 GWLEIYRWKDE  342 (365)
T ss_dssp             CEEEEEEEETT
T ss_pred             CeEEEEEEeCC
Confidence            57899987544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=0.0016  Score=55.74  Aligned_cols=217  Identities=17%  Similarity=0.163  Sum_probs=123.6

Q ss_pred             cceeEEEEeeCCCCEEEEEeCCC---cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC--C
Q 013545          104 YAISSAIWYPVDTGLFVTGSYDH---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI--A  178 (441)
Q Consensus       104 ~~V~~~~~~~~~~~~l~sgs~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl--~  178 (441)
                      ..+....|+| ||+.||-.....   .+.+.+...+.........+......+++++.  .++.....++...++..  .
T Consensus        39 ~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          39 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETT
T ss_pred             CceeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCC--eeeEeeecCCccceeecccc
Confidence            3455677887 898888654433   35556777666655555556666777887653  34444444444333333  2


Q ss_pred             CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP  258 (441)
Q Consensus       179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (441)
                      ..... .............++++++.++++...++...+|.........                               
T Consensus       116 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-------------------------------  163 (269)
T d2hqsa1         116 SGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------------------------------  163 (269)
T ss_dssp             TCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------------------------------
T ss_pred             cccce-eeeeccccccccccccccccceecccccCCceEeeeecccccc-------------------------------
Confidence            22222 2223444445667777877766676667766666543110000                               


Q ss_pred             CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC-c--EEEeeCCC
Q 013545          259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-R--IRLWDVES  335 (441)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-~--i~~wd~~~  335 (441)
                                                  .           ....+........++|++..++..+.++ .  +.+.+...
T Consensus       164 ----------------------------~-----------~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~  204 (269)
T d2hqsa1         164 ----------------------------Q-----------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  204 (269)
T ss_dssp             ----------------------------E-----------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             ----------------------------e-----------eeecccccccccccccccceeEEEeecCCceeeeEeeccc
Confidence                                        0           0001123345668999999988766554 3  44445544


Q ss_pred             CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545          336 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  401 (441)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp  401 (441)
                      +....      ...........++|||+.++....    ..+.++++..+. ...+....+.+...+|||
T Consensus       205 ~~~~~------~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         205 GGVQV------LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CCEEE------CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             ccceE------eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence            33211      112233455679999998765432    357788886554 455666777888999998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.05  E-value=0.0035  Score=55.47  Aligned_cols=67  Identities=19%  Similarity=0.349  Sum_probs=46.4

Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEE
Q 013545          307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD  377 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd  377 (441)
                      .-.|++.++|+..++....++|.+||..+++...    .+......+..+++.+++..+++.....-++|.
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~----~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM----RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE----EEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEE----EEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            4478999999998988888999999988765321    222333456678888888777665444334443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=0.00036  Score=60.29  Aligned_cols=117  Identities=15%  Similarity=0.093  Sum_probs=79.0

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceE
Q 013545          306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTC  384 (441)
Q Consensus       306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~  384 (441)
                      ...+|++.++++.+++-..+..+..++...........    .....+..+++.+++.+.++... ..+..++.......
T Consensus        99 ~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~  174 (260)
T d1rwia_          99 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF----TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  174 (260)
T ss_dssp             SEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC----CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             ecccccccccceeEeeccccccccccccccceeeeeee----cccCCcceeeecCCCCEeeeccccccccccccccceee
Confidence            36789999999988887777778888776543211100    11234556777788876555433 45777776654444


Q ss_pred             eeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545          385 LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  426 (441)
Q Consensus       385 ~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~  426 (441)
                      ............|++.++|..+++....+.|..+++......
T Consensus       175 ~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~  216 (260)
T d1rwia_         175 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST  216 (260)
T ss_dssp             ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE
T ss_pred             eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE
Confidence            433455566799999999998888887888888888766544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.95  E-value=0.0051  Score=53.82  Aligned_cols=218  Identities=11%  Similarity=0.066  Sum_probs=126.3

Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec--
Q 013545          110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--  187 (441)
Q Consensus       110 ~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~--  187 (441)
                      .|.+.++.+..+=-..++|..||..+++. ..+.++..+..+.+..+   ..+++ ++.+ -+.++|.++++......  
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~d---g~l~v-a~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISD---SKQLI-ASDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEET---TEEEE-EETT-EEEEEETTTCCEEEEECSS
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecC---CCEEE-EEeC-ccEEeecccceeeEEeeee
Confidence            45544555555544668899999988875 35666666666665543   23444 3444 59999999997543222  


Q ss_pred             CC--CCCeEEEEEecCCCcEEEEeecC----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545          188 GH--RDGIMTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP  261 (441)
Q Consensus       188 ~h--~~~v~~v~fsp~~~~~l~s~s~D----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (441)
                      ..  ...+..+.+.|+|. +.++...+    +.-.+|.+..++...                                  
T Consensus        98 ~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~~----------------------------------  142 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTK----------------------------------  142 (295)
T ss_dssp             TTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEE----------------------------------
T ss_pred             cCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCcEEE----------------------------------
Confidence            11  22467788888886 33332211    122233322211100                                  


Q ss_pred             CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCcee
Q 013545          262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTL  340 (441)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~  340 (441)
                                                            ........+.++|+++++. +++-+..+.|..+++.......
T Consensus       143 --------------------------------------~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~  184 (295)
T d2ghsa1         143 --------------------------------------LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP  184 (295)
T ss_dssp             --------------------------------------EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB
T ss_pred             --------------------------------------EeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccc
Confidence                                                  0011233567899999985 4566778889998875322111


Q ss_pred             ----eeeeeEEeccCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEc-CCCCeEE
Q 013545          341 ----VNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQELY  407 (441)
Q Consensus       341 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs-pd~~~l~  407 (441)
                          ..+.........+--+++..++.+.++. ..+.|..||. +|+.+..+.--...+++++|- ||.+.|+
T Consensus       185 ~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         185 TGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             SSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             ccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence                0111101112335556777788766543 4567888885 688888776655679999996 6766655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.86  E-value=0.0078  Score=53.23  Aligned_cols=228  Identities=11%  Similarity=0.067  Sum_probs=127.4

Q ss_pred             EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeC----CCcEEEEECCCCce
Q 013545          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTE----DVQVRLCDIASGAI  182 (441)
Q Consensus       108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~----d~~I~vwdl~~~~~  182 (441)
                      .++|.+ ++++.++-...++|..||..++.....+ ...+....+++.+++   .++++...    .+.+...+..+...
T Consensus        44 G~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG---~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          44 GLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             eCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC---CEEEEecCCCccceeEEEEcCCCcee
Confidence            455654 6777788778899999998876654433 234445666776643   34444332    23355555555544


Q ss_pred             eeeecCC--CCCeEEEEEecCCCcEEEEeecCC----cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545          183 SQTLSGH--RDGIMTVEWSTSSEWILVTGGCDG----AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV  256 (441)
Q Consensus       183 ~~~l~~h--~~~v~~v~fsp~~~~~l~s~s~Dg----~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (441)
                      .......  ......+.+.|+|. +.++.....    .-.+|-+.                                   
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~-----------------------------------  163 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVS-----------------------------------  163 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEEC-----------------------------------
T ss_pred             eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEe-----------------------------------
Confidence            3333221  23356788888886 444421100    00011000                                   


Q ss_pred             CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCC
Q 013545          257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVES  335 (441)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~  335 (441)
                                        +.+.      ...           .........+.|+|+||++.| ++-+..++|+.|++..
T Consensus       164 ------------------~dg~------~~~-----------~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         164 ------------------PDFR------TVT-----------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             ------------------TTSC------CEE-----------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ------------------cccc------eeE-----------EEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence                              0000      000           001112346789999999854 6778889999999875


Q ss_pred             CCceeeeeee-EEe---ccCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeec------ccccceEEEEEcCCCC
Q 013545          336 GRNTLVNFET-VRL---QTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFR------GHYEYVNCCCFSSQDQ  404 (441)
Q Consensus       336 ~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~------gh~~~v~~v~fspd~~  404 (441)
                      .-........ ...   ....|--+++..++.+.++. ....|.+|+. +|+.+.++.      ++...+.|++|.|++.
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN  287 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             CCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence            3221111111 111   11234557788888866554 4478899995 688777653      4455689999999887


Q ss_pred             eEEEeec
Q 013545          405 ELYTGGN  411 (441)
Q Consensus       405 ~l~s~s~  411 (441)
                      .++....
T Consensus       288 ~~~~t~~  294 (319)
T d2dg1a1         288 QLIICSN  294 (319)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcC
Confidence            7765544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.78  E-value=0.0066  Score=53.69  Aligned_cols=112  Identities=14%  Similarity=0.172  Sum_probs=69.1

Q ss_pred             eEEEEEccCCCEEEEeecC------CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc
Q 013545          307 VTGLKVTEDGMYLLSAGSD------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI  378 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs~D------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~  378 (441)
                      .+.+++.++|.+.++....      +.+..++.......     ........+.-+++++++..++++..  ..+..|++
T Consensus       132 ~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~-----~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~  206 (319)
T d2dg1a1         132 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIAL  206 (319)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CcceeEEeccceeecccccccccCcceeEEEecccceeE-----EEeeccceeeeeeeccccceEEEecccCCceEEEEE
Confidence            5678899999877764322      23555554433211     11112234556889999987766543  56777776


Q ss_pred             cC-CceEee-------ecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545          379 WS-GKTCLT-------FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  423 (441)
Q Consensus       379 ~~-~~~~~~-------l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~  423 (441)
                      .. +.....       ..........+++.++|+..++....+.|.++++...
T Consensus       207 ~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~  259 (319)
T d2dg1a1         207 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY  259 (319)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             cCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc
Confidence            43 222111       1111223578999999998888888999999998643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.75  E-value=0.01  Score=51.18  Aligned_cols=244  Identities=11%  Similarity=0.195  Sum_probs=137.7

Q ss_pred             ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE-Ee
Q 013545           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT-GS  123 (441)
Q Consensus        45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s-gs  123 (441)
                      .=..|++++ +++.+++-.....|++||.+. ...      ..    + .......+....-..+.+....+..++. .+
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G-~~~------~~----~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   90 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKEG-RFK------FQ----F-GECGKRDSQLLYPNRVAVVRNSGDIIVTERS   90 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTTS-CEE------EE----E-CCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred             CccEEEEcC-CCCEEEEECCCCEEEEEeCCC-CEE------EE----e-cccCCCcccccccccccccccccccceeccC
Confidence            457899986 577888877888999999652 110      00    0 0000001111112223333323334443 34


Q ss_pred             CCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee--cCCCCCeEEEEEe
Q 013545          124 YDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--SGHRDGIMTVEWS  199 (441)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l--~~h~~~v~~v~fs  199 (441)
                      .++.|..++. .+.....+...  .....+++.+.   ..++++....+.+.+++.. ++.+..+  ..+......+++.
T Consensus        91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~---G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d  165 (279)
T d1q7fa_          91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNK---GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVN  165 (279)
T ss_dssp             GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTT---SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEEC
T ss_pred             Cccccccccc-cccceeecCCCcccccceeccccC---CcEEEEeeccceeeEeccC-Cceeecccccccccccceeeec
Confidence            4567777775 45555555332  22334444432   2355555556678888764 4555544  3466777889999


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      +++. ++++....+.|++||.. ++.+..+..                                                
T Consensus       166 ~~g~-i~v~d~~~~~V~~~d~~-G~~~~~~g~------------------------------------------------  195 (279)
T d1q7fa_         166 DKQE-IFISDNRAHCVKVFNYE-GQYLRQIGG------------------------------------------------  195 (279)
T ss_dssp             SSSE-EEEEEGGGTEEEEEETT-CCEEEEESC------------------------------------------------
T ss_pred             ccee-EEeeeccccceeeeecC-Cceeeeecc------------------------------------------------
Confidence            8875 67777788899999864 222211100                                                


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  358 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (441)
                                           .++.....+|++.++|+.+++-+. +++|.+++.. ++.. ..+.. ......+..+++
T Consensus       196 ---------------------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~-~~~~~-~~~~~~p~~vav  251 (279)
T d1q7fa_         196 ---------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI-SALES-KVKHAQCFDVAL  251 (279)
T ss_dssp             ---------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE-EEEEE-SSCCSCEEEEEE
T ss_pred             ---------------------cccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEE-EEEeC-CCCCCCEeEEEE
Confidence                                 011123568999999998887654 5579999854 3321 11111 112234667888


Q ss_pred             eCCCcEEEEeCCCceEEEEccC
Q 013545          359 TQDPAVVFVPCMTAVKAFDIWS  380 (441)
Q Consensus       359 ~~~~~~~~~~~~~~~~~wd~~~  380 (441)
                      .+++.++++.....+++|..-.
T Consensus       252 ~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         252 MDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             ETTTEEEEEETTTEEEEEECSC
T ss_pred             eCCCcEEEEeCCCeEEEEEeee
Confidence            9998876665556788887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.44  E-value=0.026  Score=47.91  Aligned_cols=90  Identities=10%  Similarity=0.033  Sum_probs=55.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC-----CcEEEEECCCCceeeeec---
Q 013545          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGAISQTLS---  187 (441)
Q Consensus       116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-----~~I~vwdl~~~~~~~~l~---  187 (441)
                      |+++|-.+. +.|-+.|+.+++.......++......|+|++.  .+..+...+     ..|.++++.+++..+...   
T Consensus        12 G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~--~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~   88 (281)
T d1k32a2          12 GDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSG   88 (281)
T ss_dssp             TTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCE
T ss_pred             CCEEEEEeC-CcEEEEECCCCCEEEEecCCCcccCEEECCCCC--EEEEEEeeCCCCCceEEEEEEecCCceEEeeecCC
Confidence            667665543 356667998888654444556677788999764  233333222     248888888887543221   


Q ss_pred             ---CCCCCeEEEEEecCCCcEEEE
Q 013545          188 ---GHRDGIMTVEWSTSSEWILVT  208 (441)
Q Consensus       188 ---~h~~~v~~v~fsp~~~~~l~s  208 (441)
                         ..........|+|+++.++.+
T Consensus        89 ~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          89 KSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEETTEECSEEEEECTTCCEEEEE
T ss_pred             CccCccccccccccCCCCCEEEEE
Confidence               122345678899999865443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.018  Score=53.76  Aligned_cols=150  Identities=11%  Similarity=0.125  Sum_probs=85.0

Q ss_pred             EccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe------
Q 013545           50 QVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS------  123 (441)
Q Consensus        50 ~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs------  123 (441)
                      .|.+ ++.++. -..||.|.+||+.++...            .++.....  ....+....++| |+.+++-..      
T Consensus        23 ~W~~-~~~~~~-~~~~g~i~~~~~~~~~~~------------~l~~~~~~--~~~~~~~~~~Sp-D~~~vl~~~~~~~~~   85 (465)
T d1xfda1          23 KWIS-DTEFIY-REQKGTVRLWNVETNTST------------VLIEGKKI--ESLRAIRYEISP-DREYALFSYNVEPIY   85 (465)
T ss_dssp             CBSS-SSCBCC-CCSSSCEEEBCGGGCCCE------------EEECTTTT--TTTTCSEEEECT-TSSEEEEEESCCCCS
T ss_pred             EEeC-CCcEEE-EeCCCcEEEEECCCCCEE------------EEEcCccc--cccccceeEECC-CCCeEEEEEccccee
Confidence            5664 455554 456789999999766431            11122211  122344555665 787776553      


Q ss_pred             ---CCCcEEEEECCCCeEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCe---
Q 013545          124 ---YDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGI---  193 (441)
Q Consensus       124 ---~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v---  193 (441)
                         ..+.+.++|+.++........   .+.+....++|++.   .+|-.. ++.|.+.+..++..++... +-...|   
T Consensus        86 r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~---~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG  161 (465)
T d1xfda1          86 QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ---QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNG  161 (465)
T ss_dssp             SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT---CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred             EeeccccEEEEEccCCceeeccCccCCccccceeeeccCCc---eEEEEe-cceEEEEecCCCceEEEecccCcceeecc
Confidence               356788899988775432222   12233456777654   344333 6789999988776554332 222211   


Q ss_pred             --------------EEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545          194 --------------MTVEWSTSSEWILVTGGCDGAIRFWDI  220 (441)
Q Consensus       194 --------------~~v~fsp~~~~~l~s~s~Dg~I~iWD~  220 (441)
                                    .++-|||||++++..--.+..|..+.+
T Consensus       162 ~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             ccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence                          467799999976544334455555544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0019  Score=60.75  Aligned_cols=112  Identities=8%  Similarity=0.005  Sum_probs=68.0

Q ss_pred             eEEEEEccCCCEEEEee---------cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEE
Q 013545          307 VTGLKVTEDGMYLLSAG---------SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD  377 (441)
Q Consensus       307 v~~l~~s~dg~~l~sgs---------~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd  377 (441)
                      +....||||+++|+-..         ..+.+.++|+.++....  +..............++|||..++......+.+.+
T Consensus        63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~  140 (465)
T d1xfda1          63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--LDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCA  140 (465)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--CCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEES
T ss_pred             cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--ccCccCCccccceeeeccCCceEEEEecceEEEEe
Confidence            34567999999887653         34678889998876321  11101111122235688999988777777777777


Q ss_pred             ccCCceEee-ecccccce-----------------EEEEEcCCCCeEEEeecC-CcEEEeCC
Q 013545          378 IWSGKTCLT-FRGHYEYV-----------------NCCCFSSQDQELYTGGND-RQILVWCP  420 (441)
Q Consensus       378 ~~~~~~~~~-l~gh~~~v-----------------~~v~fspd~~~l~s~s~D-~~i~vW~~  420 (441)
                      ..++..... ..|-.+.|                 ..+-|||||++||....| ..|..+.+
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence            665544332 22221111                 467799999999976544 44555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.61  E-value=0.18  Score=43.38  Aligned_cols=227  Identities=10%  Similarity=0.089  Sum_probs=125.8

Q ss_pred             EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCc
Q 013545           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY  127 (441)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~  127 (441)
                      +-.|++.++.+..+=-..+.|.-||.+++..           .++.        ....+.+++..+ ++.+++ ++.+ -
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-----------~~~~--------~~~~~~~i~~~~-dg~l~v-a~~~-g   79 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------LPFMGSALAKIS-DSKQLI-ASDD-G   79 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------CSSCEEEEEEEE-TTEEEE-EETT-E
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-----------EEEE--------CCCCcEEEEEec-CCCEEE-EEeC-c
Confidence            4456655565555555668888888876532           1111        112345566554 565555 4555 5


Q ss_pred             EEEEECCCCeEEEEEecCC-----eeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545          128 VKVWDTNCTRVVMNFKMPG-----KVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (441)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs  199 (441)
                      |.++|..+++.........     ......+.+.  +..++.+...   .+.-.+|.+..++....+.+ -.....+.|+
T Consensus        80 l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~--G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s  156 (295)
T d2ghsa1          80 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFS  156 (295)
T ss_dssp             EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEEC
T ss_pred             cEEeecccceeeEEeeeecCCCcccceeeEECCC--CCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeec
Confidence            8899999887654333211     2344444443  3333333211   22446677767765444433 3345789999


Q ss_pred             cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  279 (441)
Q Consensus       200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (441)
                      |+++.++++-+..+.|..|++........         ...                                       
T Consensus       157 ~d~~~l~~~dt~~~~I~~~~~d~~~~~~~---------~~~---------------------------------------  188 (295)
T d2ghsa1         157 PDGTTGYFVDTKVNRLMRVPLDARTGLPT---------GKA---------------------------------------  188 (295)
T ss_dssp             TTSCEEEEEETTTCEEEEEEBCTTTCCBS---------SCC---------------------------------------
T ss_pred             CCCceEEEeecccceeeEeeecccccccc---------cce---------------------------------------
Confidence            99987777877788888888642110000         000                                       


Q ss_pred             cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545          280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT  359 (441)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (441)
                            ....         ...+..+..-.+++..+|.+.++.-..+.|..||.. ++.    ...+.+....+..+++.
T Consensus       189 ------~~~~---------~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~----~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         189 ------EVFI---------DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH----IARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             ------EEEE---------ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE----EEEEECSCSBEEEEEEE
T ss_pred             ------EEEe---------ccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcE----eeEecCCCCceEEEEEe
Confidence                  0000         000112235678999999988888788899999975 432    22333333445566664


Q ss_pred             -CCCcEEEE
Q 013545          360 -QDPAVVFV  367 (441)
Q Consensus       360 -~~~~~~~~  367 (441)
                       ++...+++
T Consensus       249 G~d~~~Lyv  257 (295)
T d2ghsa1         249 GPDASRLLV  257 (295)
T ss_dssp             STTSCEEEE
T ss_pred             CCCCCEEEE
Confidence             55555554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.59  E-value=0.16  Score=42.65  Aligned_cols=44  Identities=11%  Similarity=0.045  Sum_probs=33.5

Q ss_pred             CCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC
Q 013545          169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG  213 (441)
Q Consensus       169 d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg  213 (441)
                      ++.|.+.|+.+++. +.|..+.+.+....|||||++++.+...++
T Consensus        20 ~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~   63 (281)
T d1k32a2          20 CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGS   63 (281)
T ss_dssp             TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEEST
T ss_pred             CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCC
Confidence            46799999998875 456667788899999999998765554433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.45  E-value=0.15  Score=45.88  Aligned_cols=93  Identities=10%  Similarity=0.104  Sum_probs=56.4

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCC------------------CcEE
Q 013545          115 DTGLFV-TGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTED------------------VQVR  173 (441)
Q Consensus       115 ~~~~l~-sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d------------------~~I~  173 (441)
                      ||.+++ .-..+.+|-+-|+.+.++......+  .....+......... +++.++.+                  +.+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~-YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeE-EEEccCccccccCCCCccccchhhcceEEE
Confidence            455555 4457889999999999876544432  333433433333333 44443331                  2256


Q ss_pred             EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEe
Q 013545          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG  209 (441)
Q Consensus       174 vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~  209 (441)
                      +.|.++.+....+.- ......++++|+|++.++++
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEE
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEe
Confidence            788888876654432 23456789999999877665

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.69  E-value=0.62  Score=41.03  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=37.8

Q ss_pred             CCCEEEEEeCC-CcEEEEECCCCeEEEEEecCCe--eEEEeeccCCCCccEEEEEeCC------CcEEEEECCCCc
Q 013545          115 DTGLFVTGSYD-HYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTED------VQVRLCDIASGA  181 (441)
Q Consensus       115 ~~~~l~sgs~D-~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~las~s~d------~~I~vwdl~~~~  181 (441)
                      ++.+++.|+.+ .++.+||..+..-...-.++..  ....+...+   ..+++.|+.+      ..+.+||+.+..
T Consensus        86 ~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d---G~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          86 NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD---GRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT---SCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecC---CceeeeccccccccccceeeeecCCCCc
Confidence            78888888765 6899999987765432222211  112222222   2355555432      368999998764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.45  E-value=0.1  Score=47.07  Aligned_cols=35  Identities=6%  Similarity=0.204  Sum_probs=26.7

Q ss_pred             EEEEe---cCCCcEEEEeecCCcEEEEEcCCCceeeEe
Q 013545          195 TVEWS---TSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (441)
Q Consensus       195 ~v~fs---p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~  229 (441)
                      .++|.   +||+++|+.-..++.|-+=|++..++...+
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi  126 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL  126 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEE
Confidence            44554   378899988888899999999887775544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.11  E-value=1.4  Score=37.25  Aligned_cols=229  Identities=13%  Similarity=0.204  Sum_probs=127.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCC---
Q 013545          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHR---  190 (441)
Q Consensus       115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~---  190 (441)
                      ..+.+|--+ -.+++++|+++.+.+..+.++..+.--.|..    ...|+-.+ +..|+-|+++.. .+.+.+.-|.   
T Consensus        73 ~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis----~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          73 ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS----LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS----SSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             CCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC----CCEEEEEc-CCceEEEcccCCCCchhhhhhccccc
Confidence            455665544 4589999999999999999887653222222    22344333 457999999543 4555555443   


Q ss_pred             -CCeEEEEEecCCCcEEEEee------cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545          191 -DGIMTVEWSTSSEWILVTGG------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK  263 (441)
Q Consensus       191 -~~v~~v~fsp~~~~~l~s~s------~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (441)
                       ..|..-..+++.+|++++|=      -.|.+++|..+.. .-+.++.+...++.                         
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~-------------------------  200 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ-------------------------  200 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEE-------------------------
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEE-------------------------
Confidence             45777778888898766652      2356778876542 12222221111100                         


Q ss_pred             ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545          264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  343 (441)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~  343 (441)
                                     +        ++ ++        ..+...+  ++|...      +...+++++.++.+.......+
T Consensus       201 ---------------~--------~~-~g--------~~~~~~l--f~fa~r------~~~~~kLhIiEig~~~~g~~~f  240 (327)
T d1utca2         201 ---------------F--------KM-EG--------NAEESTL--FCFAVR------GQAGGKLHIIEVGTPPTGNQPF  240 (327)
T ss_dssp             ---------------E--------CC-TT--------CSSCEEE--EEEEEE------ETTEEEEEEEECSCCCTTCCCC
T ss_pred             ---------------E--------Ec-CC--------CCCCceE--EEEEEC------CCCCcEEEEEEcCCCccCCCCC
Confidence                           0        00 00        0111223  233322      2233688888887632111111


Q ss_pred             --eeEE--e----ccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545          344 --ETVR--L----QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  414 (441)
Q Consensus       344 --~~~~--~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~  414 (441)
                        ....  +    ..+-|+.+..++.-..++..+- +-+.++|+.++.++..-+=-.+.|..-+-..+..-++....+|.
T Consensus       241 ~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~Gq  320 (327)
T d1utca2         241 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ  320 (327)
T ss_dssp             CCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSE
T ss_pred             cceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCe
Confidence              1111  1    2345778888888888777655 78999999999887654433455555554544444554445554


Q ss_pred             E
Q 013545          415 I  415 (441)
Q Consensus       415 i  415 (441)
                      |
T Consensus       321 V  321 (327)
T d1utca2         321 V  321 (327)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.66  E-value=1.6  Score=36.30  Aligned_cols=162  Identities=9%  Similarity=-0.005  Sum_probs=91.4

Q ss_pred             CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (441)
Q Consensus        41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~  120 (441)
                      .+...+.+|+|++.+++...+-..++.|+..++.....           ..+ +.     .-...+..+++....+.+..
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-----------~~v-~~-----~~~~~p~~iAvD~~~~~lY~   95 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----------TTI-IR-----QDLGSPEGIALDHLGRTIFW   95 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----------EEE-EC-----TTCCCEEEEEEETTTTEEEE
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-----------EEE-EE-----eccccccEEEEeccCCeEEE
Confidence            34456788999876666666667778888877754321           111 10     01123455666544444445


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeC--CCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545          121 TGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTE--DVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (441)
Q Consensus       121 sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~--d~~I~vwdl~~~~~~~~l~~h~~~v~~v~  197 (441)
                      +-...+.|.+.++........+.. ......+++.|.  ...++.+-..  ...|..-++............-....+++
T Consensus        96 ~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~--~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~gla  173 (263)
T d1npea_          96 TDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT  173 (263)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEE
T ss_pred             eccCCCEEEEEecCCceEEEEecccccCCcEEEEecc--cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEE
Confidence            666678899998875543322222 133556666654  2334333222  22355556654443333333345668999


Q ss_pred             EecCCCcEEEEeecCCcEEEEEcC
Q 013545          198 WSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       198 fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      +.+.++.+.++-...+.|..-|+.
T Consensus       174 iD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         174 FDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeecCcEEEEEeCCCCEEEEEECC
Confidence            988877666665566778777765

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.54  E-value=1.7  Score=36.16  Aligned_cols=219  Identities=11%  Similarity=0.034  Sum_probs=118.8

Q ss_pred             ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee
Q 013545          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (441)
Q Consensus       105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~  183 (441)
                      .+..+.+...++.++.+-..++.|+..++............ +....+++...  +..+..+-...+.|.+.++......
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~--~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc--CCeEEEeccCCCEEEEEecCCceEE
Confidence            45566676544545555566778888887655443333221 34455555432  3345455556778999999765543


Q ss_pred             eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ  262 (441)
Q Consensus       184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (441)
                      ..+......+..+++.|....++.+-...+..+||-....+ ....+                                 
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i---------------------------------  161 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL---------------------------------  161 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE---------------------------------
T ss_pred             EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee---------------------------------
Confidence            33344456788999999877666664333344455332100 00000                                 


Q ss_pred             cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCceee
Q 013545          263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLV  341 (441)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~~~~  341 (441)
                                                           .........+|++.+.+..| .+-...++|...|+......  
T Consensus       162 -------------------------------------~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~--  202 (263)
T d1npea_         162 -------------------------------------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--  202 (263)
T ss_dssp             -------------------------------------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE--
T ss_pred             -------------------------------------eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE--
Confidence                                                 00001235788998776655 55556778888888754321  


Q ss_pred             eeeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeec-ccccceEEEEEcCC
Q 013545          342 NFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFR-GHYEYVNCCCFSSQ  402 (441)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~-gh~~~v~~v~fspd  402 (441)
                         .+......|..+++.  +..++..  ....+...|..+++....+. ........+++.++
T Consensus       203 ---~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         203 ---KVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             ---EEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             ---EEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence               111122334555554  3455554  33567777888787665543 22233445555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.42  E-value=2.2  Score=37.14  Aligned_cols=106  Identities=14%  Similarity=0.168  Sum_probs=59.3

Q ss_pred             eCCCCEEEEEeCCC-----------cEEEEECCCCeEEE--EEecCCe--eEEEeeccCCCCccEEEEEeCC-CcEEEEE
Q 013545          113 PVDTGLFVTGSYDH-----------YVKVWDTNCTRVVM--NFKMPGK--VYRTAMSPLAASHMLIAAGTED-VQVRLCD  176 (441)
Q Consensus       113 ~~~~~~l~sgs~D~-----------~i~iWd~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~las~s~d-~~I~vwd  176 (441)
                      +.++++++-|+.+.           .+.+||+.+++-..  .......  .....+.++   ..+++.|+.+ ..+.+||
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~---g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN---GQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT---SCEEEECSSSTTCEEEEE
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC---CcEEEeecCCCcceeEec
Confidence            44677888777531           36789998876422  1121111  112233332   3466666544 5899999


Q ss_pred             CCCCceee--eecCCCCCeEEEEEecCCCcEEEEeecC------CcEEEEEcCCC
Q 013545          177 IASGAISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCD------GAIRFWDIRRA  223 (441)
Q Consensus       177 l~~~~~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~D------g~I~iWD~~~~  223 (441)
                      ..+..-..  .+..... -.+++..++++ +++.|+.+      ..+.+||+.+.
T Consensus       105 ~~~~~w~~~~~~~~~r~-~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARG-YQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GGGTEEEECCCCSSCCS-SCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             CccCccccccccccccc-ccceeeecCCc-eeeeccccccccccceeeeecCCCC
Confidence            98875432  1211111 23556677877 56666642      36888988764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.02  E-value=7.4  Score=36.07  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=36.2

Q ss_pred             ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545          372 AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  425 (441)
Q Consensus       372 ~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~  425 (441)
                      .+..||+.+|+.+-.+. +..+...=.++..+.+++.|+.|+.++-+|..+++.
T Consensus       439 ~l~A~D~~tGk~~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         439 ALLAWDPVKQKAAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEeCCCCeEeeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence            36678888888765443 122222223444677888899999999999998874

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.37  E-value=11  Score=34.86  Aligned_cols=71  Identities=11%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCe--eEEEeeccCCCCccEEEEEe-----CCCcEEEEECCCCceeeeec
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~las~s-----~d~~I~vwdl~~~~~~~~l~  187 (441)
                      ..++.++.|+.+.--|.++++.+........  ...+...|.-..+.+++..+     .++.|+-+|++||+.+..+.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            4677788899988889999998776654211  11111111111222333222     26789999999999887543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=9.9  Score=31.16  Aligned_cols=176  Identities=13%  Similarity=0.106  Sum_probs=97.2

Q ss_pred             eecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEE
Q 013545           30 LQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSA  109 (441)
Q Consensus        30 ~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  109 (441)
                      +..++...+.+ ....+.+|+|++..+....+=..++.|+--++......       ........      .....+..+
T Consensus        17 l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~-------~~~~~~~~------~~~~~p~gl   82 (266)
T d1ijqa1          17 LDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-------SSYDTVIS------RDIQAPDGL   82 (266)
T ss_dssp             TTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------CEEEEC------SSCSCCCEE
T ss_pred             CCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC-------cceEEEEe------CCCCCcceE
Confidence            33344444443 44567789998765655566566677766665422110       00001110      111223345


Q ss_pred             EEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEE-eCCCcEEEEECCCCceeeeec
Q 013545          110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAG-TEDVQVRLCDIASGAISQTLS  187 (441)
Q Consensus       110 ~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~-s~d~~I~vwdl~~~~~~~~l~  187 (441)
                      ++-...+.+..+-...++|.+.++........... ......+++.+.  ...+..+. +..+.|...++..........
T Consensus        83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~--~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV--HGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT--TTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc--cCeEEEeccCCCcceeEeccCCCceecccc
Confidence            66544555666667778899999876554333332 234556666653  22333332 334567777776554443344


Q ss_pred             CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (441)
Q Consensus       188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~  221 (441)
                      ..-....++++.+.++.+.++-+..+.|...|+.
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d  194 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence            4446678999998877777766667778777764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.31  E-value=1.8  Score=40.68  Aligned_cols=80  Identities=9%  Similarity=-0.045  Sum_probs=50.1

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC-CCCeEEEEEecCCCc
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-RDGIMTVEWSTSSEW  204 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h-~~~v~~v~fsp~~~~  204 (441)
                      +.|.-+|+.+++.+-+.........-.+..   ...++..|+.|+.++.+|.++|+.+..++-. .....-+.|..+|+.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T---agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT---KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEe---cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            568888999998887666543322111111   1236667899999999999999998776521 222223555667764


Q ss_pred             EEEE
Q 013545          205 ILVT  208 (441)
Q Consensus       205 ~l~s  208 (441)
                      .++.
T Consensus       521 Yi~v  524 (571)
T d2ad6a1         521 YIGS  524 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.14  E-value=19  Score=33.14  Aligned_cols=26  Identities=15%  Similarity=0.378  Sum_probs=22.2

Q ss_pred             cCCCEEEEeecCCcEEEeeCCCCCce
Q 013545          314 EDGMYLLSAGSDSRIRLWDVESGRNT  339 (441)
Q Consensus       314 ~dg~~l~sgs~D~~i~~wd~~~~~~~  339 (441)
                      -.|..|.+|+.|++++.+|.++++..
T Consensus       486 tagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         486 TAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EcCCEEEEECCCCeEEEEECCCCcEe
Confidence            35678888999999999999999853

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=81.60  E-value=2.6  Score=39.44  Aligned_cols=79  Identities=11%  Similarity=0.139  Sum_probs=50.3

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC-eEEEEEecCCCc
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG-IMTVEWSTSSEW  204 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~-v~~v~fsp~~~~  204 (441)
                      +.|.-||+.+++.+-+.........-.+..   ...++..|+.|+.++.+|.++|+.+..++-.... -.-+.|.-+|+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T---agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST---AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE---CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            578889999999988777654432212221   1236667899999999999999998776532111 111344456654


Q ss_pred             EEE
Q 013545          205 ILV  207 (441)
Q Consensus       205 ~l~  207 (441)
                      .++
T Consensus       515 yv~  517 (560)
T d1kv9a2         515 YVA  517 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            333

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.23  E-value=2  Score=40.48  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=49.7

Q ss_pred             CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC-CeEEEEEecCCCc
Q 013545          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-GIMTVEWSTSSEW  204 (441)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~-~v~~v~fsp~~~~  204 (441)
                      +.|.-+|+.+++.+-+...+.+...-.++.   ...++.+|+.|+.++.+|.+||+.+..++-... .-.-+.|..+|+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lst---agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLAT---AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEE---cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            678889999999887776554432211221   223666799999999999999999987752211 1112456667753

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.13  E-value=21  Score=33.03  Aligned_cols=69  Identities=12%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCe--eEEEeeccCCCCccEEEEEeC------CCcEEEEECCCCceeeee
Q 013545          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGAISQTL  186 (441)
Q Consensus       117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~las~s~------d~~I~vwdl~~~~~~~~l  186 (441)
                      .+++.++.|+.|.--|.++++.+..+.....  ...+...|.-..+ .+..+..      .+.|+-+|++||+.+..+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECC-eEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            4688888999999999999999877753211  0111111111112 3334432      488999999999988764