Citrus Sinensis ID: 013553

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MRVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAKAEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFGDSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVLTYARKVRDIR
Secondary Structure (PSIPRED)
ccccccccccccEEEEccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHccccccccccccEEEccccccccccccccccccccEEEccccccHHHHHHHHHHHccccccHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEHHHcccccEcHHcccHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccHHHccccccHHHHHHHHcHHHHHHccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEEEEccccccccccccccccEEEEccccccHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHccccccccccEccccHHHHEEEEEcccccEEcc
Coil and Loop (DISEMBL)
MRVEREMASNNLVVKVKRETIAACmtcpicntllrdaTTISECLHTFCRKCIydkisdeeieccpvcnidlgcvpleklrpdhtlqDVRAKifplkrrkvkapeavpsvtlpvrrkersLSSLVvsaprvsaqttMTRRRSNAAARKAAALrgsnlstdkppkkeedsvednedgasspeTLNKLSqnvkpmqssssaqpsqpisskekdndaeqcegksdlwkpLNFLVEVASRTRslksnslgseakaepttitdneaqvhktknkedkcksksgnknnnpdpttsetinpkRLRRIRRKTAaafgdsnispqAVLDAAGakyerrngpiwFSLVAsedqrgslplpqisssylrikdrnipvSFIQKYLMMkldlpseseveikcmgqpviptlqlyNLVDLWLQtastsdrvpamigsSAKDFVMVLTYARKVRDIR
Flexible Loop (DISEMBL)
mrveremasnnlvvkvKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAkifplkrrkvkapeavpsvtlpvrrkerslsslvvsaprvsaqttmtrrrsNAAARKAAalrgsnlstdkppkkeedsvednedgasspETLNKLSQNVKPMqssssaqpsqpisskekdNDAEQcegksdlwkplNFLVEVASRtrslksnslgseakaepttitdneaqvhktknkedkcksksgnknnnpdpttsetinpkrlRRIRRKTaaafgdsnispqAVLDAAGAKYERRNGPIWFSLVasedqrgslplpqisssylrikdrnIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVLTYARKVRDIR
Low Complexity Region (SEG)
MRVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQTTMTrrrsnaaarkaaalrGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKpmqssssaqpsqpissKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAKAEPTTITDNEAQVHKTKNKEDkcksksgnknnnPDPTTSETINPKRLRRIRRKTAAAFGDSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVLTYARKVRDIR
Disordered region (IsUnstruct)
**********NLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK*****************************************************************************************************************************LWKPLNFLVEV************************************************************************************VLDAAGAKYERRNGPIWFSLVAS********LPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVLTYARK*****
Disordered Region (DISOPRED)
******************ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL****************************************************************************************************************************************************************************************************************************************RNGPIWF*****************SSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVE**CMGQPVIPTLQLYNLVDLWLQ*****************DFVMVLTYARK*****
Disordered Region (DISEMBL)
********SNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPV*****************************************************************PETLNKLS*******************************GKSDLWKPLNFLVEVASRT*****************TITDNE******************************TINPKRLRRIRRKTAAAFGDSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVLTYARKVRDIR
Disordered Region (DISPRO)
*********NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKV**********************************************************************************************************************KSDLWKPLNFLVEVASR******************************************************************************************ERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVLTYARKVRD**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAKAEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFGDSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVLTYARKVRDIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
Q94AY3	420	E3 ubiquitin protein liga	yes	no	0.934	0.980	0.592	1e-131
Q9M9Y4	421	E3 ubiquitin protein liga	no	no	0.936	0.980	0.582	1e-129
Q9LS86	480	Probable E3 ubiquitin pro	no	no	0.185	0.170	0.536	5e-22
Q07G17	242	Polycomb group RING finge	yes	no	0.183	0.334	0.440	9e-11
Q4QR06	259	Polycomb group RING finge	N/A	no	0.188	0.320	0.406	2e-10
Q28H21	259	Polycomb group RING finge	no	no	0.188	0.320	0.406	2e-10
Q8BTQ0	241	Polycomb group RING finge	yes	no	0.183	0.336	0.428	3e-10
Q3KNV8	242	Polycomb group RING finge	yes	no	0.183	0.334	0.428	4e-10
Q2KJ29	242	Polycomb group RING finge	yes	no	0.183	0.334	0.428	4e-10
Q7ZYZ7	261	Polycomb group RING finge	yes	no	0.179	0.302	0.390	1e-09

>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/429 (59%), Positives = 313/429 (72%), Gaps = 17/429 (3%)

Query: 10  NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
            ++V KVKRET+ ACMTCP+C+ LLRDATTISECLHTFCRKCIY+KI+++EIE CPVC+I
Sbjct: 3   GDMVAKVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDI 62

Query: 70  DLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPR 129
           DLG  PLEKLRPDH LQD+RAK+FPLKR+K +APE V S++LP +RKERS+SSLVVS PR
Sbjct: 63  DLGGTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPR 122

Query: 130 VSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNV 189
           VSAQ   T +R+ AA RK   +RGS   T +  KKEE+  +D+ + ASSPETL K +QN 
Sbjct: 123 VSAQAGTTGKRTKAATRK--DVRGSGSFTKRTVKKEEEFGDDHVESASSPETLKKFTQN- 179

Query: 190 KPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAK 249
              + SS A P+Q +S++   +  E  + K  LWKPLNFLV+VA+ T+         + K
Sbjct: 180 --KRQSSYANPNQSLSNRRNKDVDEPWDSKLHLWKPLNFLVDVANGTK---------DPK 228

Query: 250 AEPTTITDNEAQVHKTKNKEDKCKSKSGNK-NNNPDPTTSETINPKRLRRIRRKTAAAFG 308
           +E    + N+ Q  KTK K+ K K K   + +NN DPTTSET   KR RR RRK ++ FG
Sbjct: 229 SELGNASHNDVQGSKTKTKDHKRKCKLEEEISNNGDPTTSETATLKRTRRTRRKRSSTFG 288

Query: 309 DSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFI 368
           DS I    +  AA  K ERRNG +WFSLVAS +Q G   LPQI ++YLRI+D NIPVSFI
Sbjct: 289 DSRIP--LLPGAASLKQERRNGHVWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFI 346

Query: 369 QKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFV 428
           QKYLM KLDL SE EVEI CMG+PVIPTLQL++LVDLWL+T S   RV A IGSSAK+FV
Sbjct: 347 QKYLMRKLDLKSEDEVEITCMGEPVIPTLQLHSLVDLWLETTSKHQRVAASIGSSAKEFV 406

Query: 429 MVLTYARKV 437
           MVL Y+RK+
Sbjct: 407 MVLVYSRKL 415

E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress. Mediates ubiquitination and subsequent proteasomal degradation of the drought-induced transcriptional activator DREB2A. Functionally redundant with DRIP1.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1 PE=1 SV=2

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/429 (58%), Positives = 312/429 (72%), Gaps = 16/429 (3%)

Query: 12  LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
           +++KVK+ET+ AC++C IC+ +LRDATTISECLHTFCRKCIY+KI+++EIE CPVCNIDL
Sbjct: 1   MMIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDL 60

Query: 72  GCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVS 131
           G  PLEKLRPDH LQD+RAKIF LKRRKVKAP  V   +LP +RKERS+SSLVVS P VS
Sbjct: 61  GSTPLEKLRPDHNLQDLRAKIFALKRRKVKAPGIV---SLPGKRKERSISSLVVSTPMVS 117

Query: 132 AQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKP 191
           AQ   TRRR+ A  RK   LR  +L+ ++  KKEE S ++  +  SSP+TLNK +QN + 
Sbjct: 118 AQAGTTRRRTKAPTRKE--LRNGSLA-ERTVKKEESSGDELLESTSSPDTLNKFTQNKR- 173

Query: 192 MQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSN-SLGSEAKA 250
            QS  S + S  IS+KE  +  E  + K D WKPLNFLVEVA+ T+ LKS+ S GS +K+
Sbjct: 174 -QSKKSCKES--ISNKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKS 229

Query: 251 EPTTITDNEAQ-VHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRK-TAAAFG 308
           E   ++ N+ Q        + +   +  +K+NN DPTTSET+ PKR+R  +RK +A   G
Sbjct: 230 EHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLG 289

Query: 309 DSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFI 368
           DS   PQ   D + AK ERRNGP+WFSLVAS DQ G   LPQI +++LRI+D N  VSFI
Sbjct: 290 DSRNLPQP--DESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFI 347

Query: 369 QKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFV 428
           QKYLM KLDL SE+E+EIKCMG+ VIPTL LYNLVDLWLQ +S   R  A++GSSAKDF 
Sbjct: 348 QKYLMRKLDLESENEIEIKCMGEAVIPTLTLYNLVDLWLQKSSNHQRFAALVGSSAKDFT 407

Query: 429 MVLTYARKV 437
           MVL YARK+
Sbjct: 408 MVLVYARKL 416

E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress. Mediates ubiquitination and subsequent proteasomal degradation of the drought-induced transcriptional activator DREB2A. Functionally redundant with DRIP2.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana GN=At3g23060 PE=2 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 58/82 (70%)

Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          ++ KV  + +  C+ CPIC    +DATTISECLHTFCR CI +K  +E +  CPVCN++L
Sbjct: 1  MLTKVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNL 60

Query: 72 GCVPLEKLRPDHTLQDVRAKIF 93
          G  PLEKLR D T QD++ KI+
Sbjct: 61 GVFPLEKLRSDCTWQDLKLKIY 82

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis GN=pcgf3 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          L  K+K   I A +TC +CN  L DATT++ECLHTFCR C+   +  EE   CP C I +
Sbjct: 2  LTRKIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59

Query: 72 G-CVPLEKLRPDHTLQDVRAKIFP 94
              PL+ +  D T+QD+  K+ P
Sbjct: 60 HQSHPLQYIGHDRTMQDIVYKLVP 83

Component of Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes.

Xenopus tropicalis (taxid: 8364)

>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 10  NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
           N  VVKVK + +   + C +C     DATTI+ECLHTFC+ CI   +   +   CP+CNI
Sbjct: 28  NEEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKY--CPLCNI 85

Query: 70  DLG-CVPLEKLRPDHTLQDVRAKIFP 94
            +    PL  L+ D  +QD+  K+ P
Sbjct: 86  KIHETQPLLNLKLDRVMQDIVYKLVP 111

Component of Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes.

Xenopus laevis (taxid: 8355)

>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 10  NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
           N  VVKVK + +   + C +C     DATTI+ECLHTFC+ CI   +   +   CP+CNI
Sbjct: 28  NEEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKY--CPLCNI 85

Query: 70  DLG-CVPLEKLRPDHTLQDVRAKIFP 94
            +    PL  L+ D  +QD+  K+ P
Sbjct: 86  KIHETQPLLNLKLDRVMQDIVYKLVP 111

Component of Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes.

Xenopus tropicalis (taxid: 8364)

>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          L  K+K   I A +TC +C+  L DATT++ECLHTFCR C+   +  EE   CP C I +
Sbjct: 2  LTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59

Query: 72 G-CVPLEKLRPDHTLQDVRAKIFP 94
              PL+ +  D T+QD+  K+ P
Sbjct: 60 HQSHPLQYIGHDRTMQDIVYKLVP 83

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Mus musculus (taxid: 10090)

>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          L  K+K   I A +TC +C+  L DATT++ECLHTFCR C+   +  EE   CP C I +
Sbjct: 2  LTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59

Query: 72 G-CVPLEKLRPDHTLQDVRAKIFP 94
              PL+ +  D T+QD+  K+ P
Sbjct: 60 HQSHPLQYIGHDRTMQDIVYKLVP 83

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Homo sapiens (taxid: 9606)

>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          L  K+K   I A +TC +C+  L DATT++ECLHTFCR C+   +  EE   CP C I +
Sbjct: 2  LTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59

Query: 72 G-CVPLEKLRPDHTLQDVRAKIFP 94
              PL+ +  D T+QD+  K+ P
Sbjct: 60 HQSHPLQYIGHDRTMQDIVYKLVP 83

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Bos taurus (taxid: 9913)

>sp|Q7ZYZ7|PCGF1_DANRE Polycomb group RING finger protein 1 OS=Danio rerio GN=pcgf1 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 14  VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG- 72
           VK+K + +   + C +C     DATTI+ECLHTFC+ CI   +   +   CP+CNI +  
Sbjct: 32  VKIKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKY--CPMCNIKIHE 89

Query: 73  CVPLEKLRPDHTLQDVRAKIFP 94
             PL  L+ D  +QD+  K+ P
Sbjct: 90  TQPLLNLKLDRVMQDIVYKLVP 111

Component of Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
225437241	430	PREDICTED: E3 ubiquitin protein ligase D	0.968	0.993	0.700	1e-164
356503576	445	PREDICTED: E3 ubiquitin protein ligase D	0.972	0.964	0.663	1e-156
356570616	428	PREDICTED: E3 ubiquitin protein ligase D	0.965	0.995	0.665	1e-154
224082740	436	predicted protein [Populus trichocarpa]	0.959	0.970	0.673	1e-143
255559945	520	ring finger protein, putative [Ricinus c	0.941	0.798	0.669	1e-143
224066301	436	predicted protein [Populus trichocarpa]	0.961	0.972	0.634	1e-139
449530319	430	PREDICTED: E3 ubiquitin protein ligase D	0.959	0.983	0.622	1e-136
449455272	430	PREDICTED: E3 ubiquitin protein ligase D	0.959	0.983	0.622	1e-136
225453016	449	PREDICTED: E3 ubiquitin protein ligase D	0.945	0.928	0.579	1e-133
296087924	425	unnamed protein product [Vitis vinifera]	0.934	0.969	0.595	1e-133

>gi|225437241|ref|XP_002275598.1| PREDICTED: E3 ubiquitin protein ligase DRIP2 [Vitis vinifera] gi|297735508|emb|CBI17948.3| unnamed protein product [Vitis vinifera]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 302/431 (70%), Positives = 349/431 (80%), Gaps = 4/431 (0%)

Query: 10  NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
           +N VVKV+RETIAACMTCP+CN LLRDATTISECLHTFCRKCIY+KISDEE+ECCP+CN 
Sbjct: 2   SNQVVKVRRETIAACMTCPLCNKLLRDATTISECLHTFCRKCIYNKISDEELECCPICNT 61

Query: 70  DLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPR 129
           DLGCVPLEKLRPDH LQDVRAKIFP KRRKVKAPE V  VTLPV+RKERSLSSLVVS PR
Sbjct: 62  DLGCVPLEKLRPDHNLQDVRAKIFPFKRRKVKAPEVVLPVTLPVKRKERSLSSLVVSTPR 121

Query: 130 VSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNV 189
           VS QTTMT RR+ + ARKA ALRGS  S +K  KKEEDSV +    +SSPETLNK +QN+
Sbjct: 122 VSTQTTMTGRRTKSVARKATALRGSGFSIEKLIKKEEDSVGERPASSSSPETLNKFTQNI 181

Query: 190 KPMQSSSSAQPS-QPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEA 248
           +  Q+S SA+PS     +KE +N AE  EGK DLWKPLN LVEVA+RT+SLK NS GS  
Sbjct: 182 R--QNSPSAEPSIHSTPNKETENGAESWEGKFDLWKPLNCLVEVANRTKSLKFNSQGSAV 239

Query: 249 KAEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFG 308
           K+EP  + D E+QV KTK KE   KSK  ++  +  P ++E++ PK+L R+RR+ AAAFG
Sbjct: 240 KSEPMHVPDGESQVRKTKVKEHGRKSKVQDEKISTTPVSAESVKPKKLCRVRRRRAAAFG 299

Query: 309 DSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFI 368
           +  ISPQAVL+A    ++RR G IWFSLVASEDQ G   LPQISS++LRIKD N+PVSFI
Sbjct: 300 ELGISPQAVLNAVN-NHKRRTGSIWFSLVASEDQEGDASLPQISSNFLRIKDVNVPVSFI 358

Query: 369 QKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFV 428
           QKYLM KLDL SE+EVEIKCMGQPV+PTLQL+NLVDLWLQTASTS RVPA IGSS K+FV
Sbjct: 359 QKYLMRKLDLTSETEVEIKCMGQPVLPTLQLHNLVDLWLQTASTSQRVPASIGSSGKEFV 418

Query: 429 MVLTYARKVRD 439
           MVL YAR++ D
Sbjct: 419 MVLAYARRLLD 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503576|ref|XP_003520583.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/434 (66%), Positives = 340/434 (78%), Gaps = 5/434 (1%)

Query: 5   REMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECC 64
           R  + +N VVKV+R TI ACMTCP+CN L R+ATTISECLHTFCRKCIYDKI+DEEIECC
Sbjct: 13  RRSSMSNQVVKVRRNTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEEIECC 72

Query: 65  PVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLV 124
           P+CNIDLGCVPLEKLRPDH+LQDVRAK+FPLK RKVKAPE V SV LP RRKERSLSSLV
Sbjct: 73  PICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLV 132

Query: 125 VSAPRVSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNK 184
           VS PRVS Q  MT RR+    RKA+ LR ++ S +KP KKEED +ED  D +SSP+T  K
Sbjct: 133 VSTPRVSTQAAMTGRRTK-PTRKASGLRSTSFSIEKPIKKEEDLLEDRPDSSSSPDTSYK 191

Query: 185 LSQNVKPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSL 244
            +QN    QS S  + SQ I +K  +N AE  + K DLWKPLNFLVEVASR++S KSN++
Sbjct: 192 FAQNSG--QSISPCEGSQSIPNKGSENGAEPWDAKLDLWKPLNFLVEVASRSKSFKSNNV 249

Query: 245 -GSEAKAEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKT 303
            GS+AK E   + ++++QV KTKNKE+K K+K  ++ ++P P +S+T  P +LRRIR+K 
Sbjct: 250 QGSDAKLETNQVNESDSQVQKTKNKENKRKAKIEDEKSSPYPVSSDTAKPNKLRRIRKKK 309

Query: 304 AAAFGDSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNI 363
             A G+S ISPQAVLD+A  +   R GPIWFSLVASE+Q G  PLPQI +SYLRIKD +I
Sbjct: 310 ETASGESGISPQAVLDSASNRLS-RTGPIWFSLVASENQEGDAPLPQIPASYLRIKDGSI 368

Query: 364 PVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSS 423
            VSFIQKYLM KLDL SE+EVEIKCMGQPV+PTLQLYNLV+LWL  AST  R+PA IGSS
Sbjct: 369 SVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLQLYNLVELWLDMASTPQRIPATIGSS 428

Query: 424 AKDFVMVLTYARKV 437
           AKDFVMVL Y RKV
Sbjct: 429 AKDFVMVLAYGRKV 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570616|ref|XP_003553481.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/430 (66%), Positives = 340/430 (79%), Gaps = 4/430 (0%)

Query: 10  NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
           +N VVKV+R+TIAACMTCP+C  L R+ATTISECLHTFCRKCIYDKI+DEEIECCP+CNI
Sbjct: 2   SNQVVKVRRDTIAACMTCPLCGKLFREATTISECLHTFCRKCIYDKITDEEIECCPICNI 61

Query: 70  DLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPR 129
           DLGCVPLEKLRPDH+LQDVRAK+FPLK RKVKAPE V SV LP RRKERSLSSLVVS PR
Sbjct: 62  DLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPR 121

Query: 130 VSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNV 189
           VS Q TMT RR+    RKA+ LR ++ S +KP KKEE  +ED  D +SSP+T +K + N 
Sbjct: 122 VSTQATMTGRRTK-PTRKASGLRSTSFSIEKPIKKEEYLLEDRPDSSSSPDTSHKFAHNS 180

Query: 190 KPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAK 249
              QS S  + SQ I +K  +N AE  + K DLWKPLN LVEVASR++S KSN LGS+AK
Sbjct: 181 G--QSMSPCEGSQSIPNKGSENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSNILGSDAK 238

Query: 250 AEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFGD 309
            E   + ++++QV K KNKE+K K+K  ++ ++P P +S+T  P +LRRIR+K   A G+
Sbjct: 239 LETNQVNESDSQVLKIKNKENKRKAKIEDEKSSPYPVSSDTAKPNKLRRIRKKKEPASGE 298

Query: 310 SNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQ 369
           S ISPQAVLD+A  +   R GPIWFSLVASE+Q G  PLPQI +SYLRIKD ++PVSFIQ
Sbjct: 299 SGISPQAVLDSASNRLS-RTGPIWFSLVASENQEGDDPLPQIPASYLRIKDGSVPVSFIQ 357

Query: 370 KYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVM 429
           KYLM KLDL SE+EVEIKC+GQPV+PTLQLYNLV+LWL TA TS R+PA IGSSAKDFVM
Sbjct: 358 KYLMKKLDLTSETEVEIKCVGQPVLPTLQLYNLVELWLDTAPTSQRIPATIGSSAKDFVM 417

Query: 430 VLTYARKVRD 439
           VL YAR+V D
Sbjct: 418 VLAYARRVPD 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082740|ref|XP_002306821.1| predicted protein [Populus trichocarpa] gi|222856270|gb|EEE93817.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 287/426 (67%), Positives = 332/426 (77%), Gaps = 3/426 (0%)

Query: 13  VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
           VVKV+RETI ACMTCP+CN LLRDATTISECLHTFCRKCIY +ISDE ++ CP+CNI+LG
Sbjct: 10  VVKVRRETIEACMTCPLCNKLLRDATTISECLHTFCRKCIYQRISDEGLDSCPICNINLG 69

Query: 73  CVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPV-RRKERSLSSLVVSAPRVS 131
           C+PLEKLRPDH LQDVR+KIFP KRRKV+APE V SVTLPV RRKERSLSSLVVS P+VS
Sbjct: 70  CIPLEKLRPDHNLQDVRSKIFPYKRRKVEAPEVVESVTLPVIRRKERSLSSLVVSTPKVS 129

Query: 132 AQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKP 191
            QTT T RR+    RKAAALRGS  S +KP KKE D  ED+ + +SSPET  K +QN + 
Sbjct: 130 TQTTTTGRRTKPFPRKAAALRGSGFSIEKPIKKEHDRAEDSPESSSSPETPKKFNQNTR- 188

Query: 192 MQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAKAE 251
            Q+SSSA+PSQP    E +N AE  +GKSDLW+PLNFLVEVA+RT+S KS    ++AK E
Sbjct: 189 -QNSSSAEPSQPAPDDEAENGAEPRDGKSDLWQPLNFLVEVANRTKSFKSIPQVNDAKLE 247

Query: 252 PTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFGDSN 311
              + +NE QVHKTK KE+K KSK  ++ NN D  +  T+ PKRLRRIRRK AA    S 
Sbjct: 248 SRPVRENEPQVHKTKFKENKDKSKVKDEKNNIDNVSEGTVEPKRLRRIRRKKAAFNDVSG 307

Query: 312 ISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKY 371
           IS  AVL  A AK ERR+GP+WFSL+ASE+Q G  PLPQI SSYLR+KD N+PVSFIQKY
Sbjct: 308 ISSPAVLHTAAAKQERRSGPVWFSLLASEEQEGDAPLPQIPSSYLRLKDGNVPVSFIQKY 367

Query: 372 LMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVL 431
           L+ KLDL SE EVEI+CMG+PVIPTL L NLVD WLQ A   ++VP   GSSAKDFVMVL
Sbjct: 368 LVKKLDLTSEVEVEIRCMGRPVIPTLLLCNLVDQWLQAAPKPEQVPVSAGSSAKDFVMVL 427

Query: 432 TYARKV 437
            YARKV
Sbjct: 428 AYARKV 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559945|ref|XP_002520991.1| ring finger protein, putative [Ricinus communis] gi|223539828|gb|EEF41408.1| ring finger protein, putative [Ricinus communis]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/421 (66%), Positives = 329/421 (78%), Gaps = 6/421 (1%)

Query: 11  NLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70
           N VVKVKR+TIAACMTCP+C+ LL+DATTISECLHTFCRKCIY KISDE +ECCP+CNID
Sbjct: 3   NQVVKVKRDTIAACMTCPLCDMLLKDATTISECLHTFCRKCIYKKISDEGVECCPICNID 62

Query: 71  LGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRV 130
           LGCVPLEKLRPDH LQDVRAKIFP KRRKV+APE   SV LPVRRKERSLSSLVV+AP+V
Sbjct: 63  LGCVPLEKLRPDHNLQDVRAKIFPFKRRKVEAPEVTSSVILPVRRKERSLSSLVVNAPKV 122

Query: 131 SAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVK 190
           SAQTT T RR+    RKA ALR SN   +K  KKE+D  ED+ + +SSPET+NK +QN K
Sbjct: 123 SAQTTTTGRRTRPVLRKATALRISNFPIEKRIKKEDDPAEDHLENSSSPETVNKFNQNTK 182

Query: 191 PMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAKA 250
             Q+SSSA+ S    + E +N AE  +GKSDLW+PLN LVEVA+R++S KS  + S+AK 
Sbjct: 183 --QNSSSAEASLFAPNNEAENGAESWDGKSDLWQPLNCLVEVANRSKSFKSIQV-SDAKQ 239

Query: 251 EPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFGDS 310
           E T   +NE QV KTK KE+K K +  ++ NN D T S+   PKRLRRIRRK AA FGDS
Sbjct: 240 EATQGHENEPQVRKTKFKEEKLKVE--DEKNNID-TPSDAAGPKRLRRIRRKKAANFGDS 296

Query: 311 NISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQK 370
            IS QAVL+AA   +E+R GP+WFSLVASEDQ G  PLPQI ++YLRIKD N+PVSFIQK
Sbjct: 297 GISSQAVLNAASVNHEKRAGPVWFSLVASEDQEGDAPLPQIPANYLRIKDGNLPVSFIQK 356

Query: 371 YLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMV 430
           YL  KLDL SE+EVEIKCMGQPV+PTL LYNL+D W+QTASTS+RV   IGS  +  V  
Sbjct: 357 YLKKKLDLASEAEVEIKCMGQPVVPTLLLYNLIDQWVQTASTSERVTTSIGSRKRSNVSF 416

Query: 431 L 431
           L
Sbjct: 417 L 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066301|ref|XP_002302072.1| predicted protein [Populus trichocarpa] gi|222843798|gb|EEE81345.1| predicted protein [Populus trichocarpa]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/429 (63%), Positives = 326/429 (75%), Gaps = 5/429 (1%)

Query: 10  NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
           ++ VVKV+RETIAACMTC +CN LLRDATTISECLHTFCRKCIY +IS+E ++ CP+CNI
Sbjct: 9   HHQVVKVRRETIAACMTCLLCNKLLRDATTISECLHTFCRKCIYRRISNEGLDSCPICNI 68

Query: 70  DLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPV-RRKERSLSSLVVSAP 128
           +LGCVPLEKLRPDH LQDVR+KIFP K+RKV+APE   SV LPV RRKERSLSSLVV  P
Sbjct: 69  NLGCVPLEKLRPDHNLQDVRSKIFPYKKRKVEAPEVAESVALPVTRRKERSLSSLVVCTP 128

Query: 129 RVSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQN 188
           +VS  TT T RR+    RKAAALRG+N S +KP  KE   VED+ + +SSPETL K +QN
Sbjct: 129 KVSTHTTTTGRRTKPFPRKAAALRGTNFSIEKPNNKEHVPVEDSPESSSSPETLKKPNQN 188

Query: 189 VKPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEA 248
           +K  Q+S   +PSQP    E +N  E  +GKSDLW+PLNFLVEVA+RT+S KS+   ++A
Sbjct: 189 IK--QNSPCTEPSQP-DPDEAENGTEPRDGKSDLWQPLNFLVEVANRTKSFKSSPQLNDA 245

Query: 249 KAEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFG 308
           K+E   + DNE +  +TK K +K KSK  ++ NN D  +   + PKRLRRIR+K A    
Sbjct: 246 KSESRPVHDNEPRALRTKFKGNKDKSKVKDEKNNIDNVSEGPVEPKRLRRIRQKRAVFNN 305

Query: 309 DSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFI 368
            S IS  AVLD A AK ERR+G +WFSL+ASE Q G  PLPQI SSYLR+KD N+PVSFI
Sbjct: 306 ISGISSPAVLDTAAAKQERRSGTVWFSLLASE-QEGEAPLPQIPSSYLRLKDGNVPVSFI 364

Query: 369 QKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFV 428
           QKYLM KLDL SE+EVEI+CMG+PVIPTL LYNLVD WLQT   +++VP   G SAKD+V
Sbjct: 365 QKYLMKKLDLASEAEVEIRCMGRPVIPTLLLYNLVDQWLQTVPKTEQVPVTAGFSAKDYV 424

Query: 429 MVLTYARKV 437
           MVL YARKV
Sbjct: 425 MVLAYARKV 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530319|ref|XP_004172143.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis sativus]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/427 (62%), Positives = 327/427 (76%), Gaps = 4/427 (0%)

Query: 11  NLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70
           N VVKVKRE IAAC+TCP+CN LL++ATTISECLHTFCRKCI DKISDEEIE CPVCNID
Sbjct: 3   NRVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCISDKISDEEIENCPVCNID 62

Query: 71  LGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRV 130
           LGC PLEKLRPDH L+D+RAKIFP KRRKVK PE  P V  PVRRKERSLSSLVV++PRV
Sbjct: 63  LGCAPLEKLRPDHNLEDLRAKIFPSKRRKVKTPEVAPVVLPPVRRKERSLSSLVVNSPRV 122

Query: 131 SAQTTMTRRRSNAAARKAAA-LRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNV 189
           S+  T T RR+ AAA + A+ LR   +S++K  KKE+DSV+D  + +SS ET +K +QN 
Sbjct: 123 SSHATTTGRRTAAAAARIASILRTPRVSSEKRVKKEDDSVDDRSESSSSFETSDKFNQNK 182

Query: 190 KPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAK 249
           +    SS  + + P+ SKE +N     E   D+WKPLN LVEVA+R++  KSNS G E K
Sbjct: 183 R--TDSSPTKSTIPLRSKETENGVNSVERNLDIWKPLNCLVEVANRSKCSKSNSQGFETK 240

Query: 250 AEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFGD 309
            E      +EAQ  K++N+E K K K  N     DP + ET  PK+LRR+R+K  + +GD
Sbjct: 241 VEAAEANGSEAQARKSRNREGKRKQKRENGKTRADPVSPETEKPKKLRRVRQKRESFYGD 300

Query: 310 SNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQ 369
           S+++PQ VLDA+ A++E + GPIW SL+AS DQ G + LPQI + YLRIKDRN+PVSF+Q
Sbjct: 301 SSLTPQVVLDASSARHEIKAGPIWLSLIAS-DQEGDVSLPQIPAKYLRIKDRNLPVSFVQ 359

Query: 370 KYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVM 429
           KYLM KLDLPSESEVE+KCMG PV+PTL L++LVDLWLQTASTS+++PA IGSSA+DF+M
Sbjct: 360 KYLMRKLDLPSESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSEKIPASIGSSAEDFIM 419

Query: 430 VLTYARK 436
           VL YARK
Sbjct: 420 VLYYARK 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455272|ref|XP_004145377.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis sativus] gi|449474218|ref|XP_004154108.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Cucumis sativus]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/427 (62%), Positives = 327/427 (76%), Gaps = 4/427 (0%)

Query: 11  NLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70
           N VVKVKRE IAAC+TCP+CN LL++ATTISECLHTFCRKCI DKISDEEIE CPVCNID
Sbjct: 3   NRVVKVKREAIAACITCPLCNKLLKEATTISECLHTFCRKCISDKISDEEIENCPVCNID 62

Query: 71  LGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRV 130
           LGC PLEKLRPDH L+D+RAKIFP KRRKVK PE  P V  PVRRKERSLSSLVV++PRV
Sbjct: 63  LGCAPLEKLRPDHNLEDLRAKIFPSKRRKVKTPEVAPVVLPPVRRKERSLSSLVVNSPRV 122

Query: 131 SAQTTMTRRRSNAAARKAAA-LRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNV 189
           S+  T T RR+ AAA + A+ LR   +S++K  KKE+DSV+D  + +SS ET +K +QN 
Sbjct: 123 SSHATTTGRRTAAAAARIASILRTPRVSSEKRVKKEDDSVDDRSESSSSFETSDKFNQNK 182

Query: 190 KPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAK 249
           +    SS  + + P+ SKE +N     E   D+WKPLN LVEVA+R++  KSNS G E K
Sbjct: 183 R--TDSSPTKSTIPLRSKETENGVNSVERNLDIWKPLNCLVEVANRSKCSKSNSQGFETK 240

Query: 250 AEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAFGD 309
            E      +EAQ  K++N+E K K K  N     DP + ET  PK+LRR+R+K  + +GD
Sbjct: 241 VEAAEANGSEAQASKSRNREGKRKQKRENGKTRADPVSPETEKPKKLRRVRQKRESFYGD 300

Query: 310 SNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQ 369
           S+++PQ VLDA+ A++E + GPIW SL+AS DQ G + LPQI + YLRIKDRN+PVSF+Q
Sbjct: 301 SSLTPQVVLDASSARHEIKAGPIWLSLIAS-DQEGDVSLPQIPAKYLRIKDRNLPVSFVQ 359

Query: 370 KYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVM 429
           KYLM KLDLPSESEVE+KCMG PV+PTL L++LVDLWLQTASTS+++PA IGSSA+DF+M
Sbjct: 360 KYLMRKLDLPSESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSEKIPASIGSSAEDFIM 419

Query: 430 VLTYARK 436
           VL YARK
Sbjct: 420 VLYYARK 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453016|ref|XP_002264002.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Vitis vinifera]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/447 (57%), Positives = 317/447 (70%), Gaps = 30/447 (6%)

Query: 13  VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
           VVKV+RETIAACMTCP+CN LL++ATTIS CLHTFCRKCIY+K+SDEE++CCPVCNIDLG
Sbjct: 5   VVKVRRETIAACMTCPLCNKLLKEATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLG 64

Query: 73  CVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSA 132
           CVP++KLRPDH LQD+RAKIFP KRRK   PE +P + LPV+RKERSLSSLVVS PRVS 
Sbjct: 65  CVPVDKLRPDHNLQDIRAKIFPFKRRKTSVPEVMPPIPLPVKRKERSLSSLVVSTPRVSM 124

Query: 133 QTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKPM 192
           QT +T RR+ A ARK+ ALRGS+ S  +P KKEEDSVED  + +SSPE+ NK++Q  K  
Sbjct: 125 QTGLTGRRTKAVARKSTALRGSSFSIVEPIKKEEDSVEDCPESSSSPESRNKVAQTKKQN 184

Query: 193 QSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLG------- 245
            S S A   Q   +K+ +NDA+  +GK DLW PLN LVE A+RT+S K NS G       
Sbjct: 185 SSISEASKDQK-PNKDTENDADPWDGKVDLWTPLNCLVEAANRTKSSKFNSQGTSLAKSE 243

Query: 246 -------------SEAKAEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNN----PDPTTS 288
                        ++AKAEP    D E  + KTK KE   K K  +  N     P P   
Sbjct: 244 PFNAPDSEVYMPKTKAKAEPLNAADGEVCIPKTKIKEHGHKIKVQDDKNGAALLPGP--- 300

Query: 289 ETINPKRLRRIRRKTAAAFGDSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPL 348
             +  +R+R + RK  +A G+     Q VL AAGAK  RRN PIWFSLVASE+Q G+ PL
Sbjct: 301 --VKRRRMRAVGRKRISASGEMCTPAQVVLSAAGAKRGRRNCPIWFSLVASENQGGNGPL 358

Query: 349 PQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQ 408
            +I + YLR+KD N+PVSFIQKYL+ KLDL +E+EVEI+C G+ V+PTLQL  LV+LWL+
Sbjct: 359 SKIPAYYLRVKDGNLPVSFIQKYLVKKLDLTNEAEVEIRCQGEAVVPTLQLQKLVELWLR 418

Query: 409 TASTSDRVPAMIGSSAKDFVMVLTYAR 435
           TASTS RV   +G+SAK+FVMVLTY R
Sbjct: 419 TASTSKRVATSVGTSAKEFVMVLTYTR 445

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087924|emb|CBI35207.3| unnamed protein product [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/428 (59%), Positives = 315/428 (73%), Gaps = 16/428 (3%)

Query: 13  VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
           VVKV+RETIAACMTCP+CN LL++ATTIS CLHTFCRKCIY+K+SDEE++CCPVCNIDLG
Sbjct: 5   VVKVRRETIAACMTCPLCNKLLKEATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLG 64

Query: 73  CVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSA 132
           CVP++KLRPDH LQD+RAKIFP KRRK   PE +P + LPV+RKERSLSSLVVS PRVS 
Sbjct: 65  CVPVDKLRPDHNLQDIRAKIFPFKRRKTSVPEVMPPIPLPVKRKERSLSSLVVSTPRVSM 124

Query: 133 QTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKPM 192
           QT +T RR+ A ARK+ ALRGS+ S  +P KKEEDSVED  + +SSPE+ NK++Q  K  
Sbjct: 125 QTGLTGRRTKAVARKSTALRGSSFSIVEPIKKEEDSVEDCPESSSSPESRNKVAQTKKQN 184

Query: 193 QSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLG-SEAKAE 251
            S S A   Q   +K+ +NDA+  +GK DLW PLN LVE A+RT+S K NS G S AK+E
Sbjct: 185 SSISEASKDQK-PNKDTENDADPWDGKVDLWTPLNCLVEAANRTKSSKFNSQGTSLAKSE 243

Query: 252 PTTITDNEAQV----HKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRKTAAAF 307
           P    D+E ++    HK K ++DK          N        +  +R+R + RK  +A 
Sbjct: 244 PFNAPDSETKIKEHGHKIKVQDDK----------NGAALLPGPVKRRRMRAVGRKRISAS 293

Query: 308 GDSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSF 367
           G+     Q VL AAGAK  RRN PIWFSLVASE+Q G+ PL +I + YLR+KD N+PVSF
Sbjct: 294 GEMCTPAQVVLSAAGAKRGRRNCPIWFSLVASENQGGNGPLSKIPAYYLRVKDGNLPVSF 353

Query: 368 IQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDF 427
           IQKYL+ KLDL +E+EVEI+C G+ V+PTLQL  LV+LWL+TASTS RV   +G+SAK+F
Sbjct: 354 IQKYLVKKLDLTNEAEVEIRCQGEAVVPTLQLQKLVELWLRTASTSKRVATSVGTSAKEF 413

Query: 428 VMVLTYAR 435
           VMVLTY R
Sbjct: 414 VMVLTYTR 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2064392	420	DRIP2 "DREB2A-interacting prot	0.931	0.978	0.565	1.2e-115
TAIR|locus:2033103	421	DRIP1 "DREB2A-interacting prot	0.936	0.980	0.557	2.5e-113
TAIR|locus:2094608	480	AT3G23060 [Arabidopsis thalian	0.274	0.252	0.455	2.2e-55
UNIPROTKB|F1NLA3	245	PCGF3 "Uncharacterized protein	0.199	0.359	0.423	2.4e-14
ZFIN|ZDB-GENE-080723-33	234	pcgf5a "polycomb group ring fi	0.179	0.337	0.414	2.4e-14
UNIPROTKB|Q07G17	242	pcgf3 "Polycomb group RING fin	0.183	0.334	0.440	2.5e-14
ZFIN|ZDB-GENE-060512-34	232	pcgf5b "polycomb group ring fi	0.176	0.336	0.419	5.7e-14
UNIPROTKB|J9P2L6	229	PCGF5 "Uncharacterized protein	0.170	0.327	0.405	3.2e-13
RGD|1307403	200	Bmi1 "Bmi1 polycomb ring finge	0.192	0.425	0.359	3.8e-13
MGI|MGI:1916837	241	Pcgf3 "polycomb group ring fin	0.183	0.336	0.428	5.4e-13

TAIR|locus:2064392 DRIP2 "DREB2A-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
 Identities = 242/428 (56%), Positives = 291/428 (67%)

Query:    11 NLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70
             ++V KVKRET+ ACMTCP+C+ LLRDATTISECLHTFCRKCIY+KI+++EIE CPVC+ID
Sbjct:     4 DMVAKVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDID 63

Query:    71 LGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRV 130
             LG  PLEKLRPDH LQD+RAK+FPLKR+K +APE V S++LP +RKERS+SSLVVS PRV
Sbjct:    64 LGGTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPRV 123

Query:   131 SAQTTMTXXXXXXXXXXXXXXXGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVK 190
             SAQ   T               GS   T +  KKEE+  +D+ + ASSPETL K +QN +
Sbjct:   124 SAQAGTTGKRTKAATRKDVRGSGS--FTKRTVKKEEEFGDDHVESASSPETLKKFTQNKR 181

Query:   191 XXXXXXXXXXXXXXXXKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAKA 250
                             K+ D   E  + K  LWKPLNFLV+VA+ T+  KS  LG+ +  
Sbjct:   182 QSSYANPNQSLSNRRNKDVD---EPWDSKLHLWKPLNFLVDVANGTKDPKSE-LGNASH- 236

Query:   251 EPTTITDNEAQVHKTKNKEDXXX-XXXXXXXXXPDPTTSETINPKRLRRIRRKTAAAFGD 309
                    N+ Q  KTK K+               DPTTSET   KR RR RRK ++ FGD
Sbjct:   237 -------NDVQGSKTKTKDHKRKCKLEEEISNNGDPTTSETATLKRTRRTRRKRSSTFGD 289

Query:   310 SNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQ 369
             S I P  +  AA  K ERRNG +WFSLVAS +Q G   LPQI ++YLRI+D NIPVSFIQ
Sbjct:   290 SRI-P-LLPGAASLKQERRNGHVWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQ 347

Query:   370 KYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVM 429
             KYLM KLDL SE EVEI CMG+PVIPTLQL++LVDLWL+T S   RV A IGSSAK+FVM
Sbjct:   348 KYLMRKLDLKSEDEVEITCMGEPVIPTLQLHSLVDLWLETTSKHQRVAASIGSSAKEFVM 407

Query:   430 VLTYARKV 437
             VL Y+RK+
Sbjct:   408 VLVYSRKL 415

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IGI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

TAIR|locus:2033103 DRIP1 "DREB2A-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 239/429 (55%), Positives = 291/429 (67%)

Query:    12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
             +++KVK+ET+ AC++C IC+ +LRDATTISECLHTFCRKCIY+KI+++EIE CPVCNIDL
Sbjct:     1 MMIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDL 60

Query:    72 GCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVS 131
             G  PLEKLRPDH LQD+RAKIF LKRRKVKAP  V   +LP +RKERS+SSLVVS P VS
Sbjct:    61 GSTPLEKLRPDHNLQDLRAKIFALKRRKVKAPGIV---SLPGKRKERSISSLVVSTPMVS 117

Query:   132 AQTTMTXXXXXXXXXXXXXXXGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKX 191
             AQ   T               GS    ++  KKEE S ++  +  SSP+TLNK +QN + 
Sbjct:   118 AQAG-TTRRRTKAPTRKELRNGS--LAERTVKKEESSGDELLESTSSPDTLNKFTQNKRQ 174

Query:   192 XXXXXXXXXXXXXXXKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSN-SLGSEAKA 250
                            + KD D E  + K D WKPLNFLVEVA+ T+ LKS+ S GS +K+
Sbjct:   175 SKKSCKESISNK---ENKDGD-EPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKS 229

Query:   251 EPTTITDNEAQVHKTKNKEDXXX-XXXXXXXXXPDPTTSETINPKRLRRIRRK-TAAAFG 308
             E   ++ N+ Q  KTK K                DPTTSET+ PKR+R  +RK +A   G
Sbjct:   230 EHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLG 289

Query:   309 DSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFI 368
             DS   PQ   D + AK ERRNGP+WFSLVAS DQ G   LPQI +++LRI+D N  VSFI
Sbjct:   290 DSRNLPQP--DESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFI 347

Query:   369 QKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFV 428
             QKYLM KLDL SE+E+EIKCMG+ VIPTL LYNLVDLWLQ +S   R  A++GSSAKDF 
Sbjct:   348 QKYLMRKLDLESENEIEIKCMGEAVIPTLTLYNLVDLWLQKSSNHQRFAALVGSSAKDFT 407

Query:   429 MVLTYARKV 437
             MVL YARK+
Sbjct:   408 MVLVYARKL 416

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IGI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

TAIR|locus:2094608 AT3G23060 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 2.2e-55, Sum P(3) = 2.2e-55
 Identities = 56/123 (45%), Positives = 79/123 (64%)

Query:    12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
             ++ KV  + +  C+ CPIC    +DATTISECLHTFCR CI +K  +E +  CPVCN++L
Sbjct:     1 MLTKVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNL 60

Query:    72 GCVPLEKLRPDHTLQDVRAKIFPLKRRKVK--APEAVPSVTLPVRRKERSLSSLVVSAPR 129
             G  PLEKLR D T QD++ KI+      +K   P+ V +     ++K +S +SL VS+ R
Sbjct:    61 GVFPLEKLRSDCTWQDLKLKIYRAMMESLKKAGPKTVAASVKSSKKKRKSRTSLRVSSSR 120

Query:   130 VSA 132
             VS+
Sbjct:   121 VSS 123

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

UNIPROTKB|F1NLA3 PCGF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 39/92 (42%), Positives = 55/92 (59%)

Query:    12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
             L  K+K   I A +TC +CN  L DATT++ECLHTFCR C+   +  EE   CP C I +
Sbjct:     5 LTRKIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 62

Query:    72 G-CVPLEKLRPDHTLQDVRAKIFP-LKRRKVK 101
                 PL+ +  D T+QD+  K+ P L+  ++K
Sbjct:    63 HQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMK 94

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

ZFIN|ZDB-GENE-080723-33 pcgf5a "polycomb group ring finger 5a" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 34/82 (41%), Positives = 45/82 (54%)

Query:    25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
             +TC IC   L   T ++ECLHTFC+ CI      EE   CP C I +    PLE LR D 
Sbjct:    16 ITCSICRGYLIKPTAVTECLHTFCKSCIVQHF--EESNECPECGIQVHETNPLEMLRLDK 73

Query:    84 TLQDVRAKIFPLKRRKVKAPEA 105
             TL+++  K+ P  R K +  E+
Sbjct:    74 TLEEIIFKLVPGLREKEEHQES 95

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q07G17 pcgf3 "Polycomb group RING finger protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 175 (66.7 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 37/84 (44%), Positives = 50/84 (59%)

Query:    12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
             L  K+K   I A +TC +CN  L DATT++ECLHTFCR C+   +  EE   CP C I +
Sbjct:     2 LTRKIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59

Query:    72 G-CVPLEKLRPDHTLQDVRAKIFP 94
                 PL+ +  D T+QD+  K+ P
Sbjct:    60 HQSHPLQYIGHDRTMQDIVYKLVP 83

GO:0031519 "PcG protein complex" evidence=ISS

ZFIN|ZDB-GENE-060512-34 pcgf5b "polycomb group ring finger 5b" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:    25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
             +TC +C   L   TT++ECLHTFC+ CI     D     CP C I +    PLE LR D+
Sbjct:    16 ITCFVCKGYLIKPTTVTECLHTFCKSCIVQHFEDSND--CPKCGIQVHETNPLEMLRLDN 73

Query:    84 TLQDVRAKIFPLKRRKVKAPE 104
             TL++V  K+ P  R K +  E
Sbjct:    74 TLEEVIFKLVPGLREKEQQQE 94

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P2L6 PCGF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query:    25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
             +TC IC   L   TT++ECLHTFC+ CI     D     CP C I +    PLE LR D+
Sbjct:    16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSND--CPRCGIQVHETNPLEMLRLDN 73

Query:    84 TLQDVRAKIFP-LKRRKVK 101
             TL+++  K+ P L+ ++++
Sbjct:    74 TLEEIIFKLVPGLREQELE 92

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1307403 Bmi1 "Bmi1 polycomb ring finger oncogene" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
 Identities = 32/89 (35%), Positives = 51/89 (57%)

Query:    15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV 74
             ++K   +   + C +C     DATTI ECLH+FC+ CI   +  E  + CP+C++ +   
Sbjct:     6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63

Query:    75 -PLEKLRPDHTLQDVRAKIFP-LKRRKVK 101
              PL  +R D TLQD+  K+ P L + ++K
Sbjct:    64 RPLLNIRSDKTLQDIVYKLVPGLFKNEMK 92

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006959 "humoral immune response" evidence=ISO

GO:0007420 "brain development" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0010468 "regulation of gene expression" evidence=ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0016574 "histone ubiquitination" evidence=ISO

GO:0016604 "nuclear body" evidence=ISO

GO:0021903 "rostrocaudal neural tube patterning" evidence=ISO

GO:0030097 "hemopoiesis" evidence=ISO

GO:0030890 "positive regulation of B cell proliferation" evidence=ISO

GO:0031519 "PcG protein complex" evidence=ISO

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=ISO

GO:0035102 "PRC1 complex" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0048103 "somatic stem cell division" evidence=ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISO

GO:0048706 "embryonic skeletal system development" evidence=ISO

GO:0051443 "positive regulation of ubiquitin-protein ligase activity" evidence=ISO

GO:0071535 "RING-like zinc finger domain binding" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

MGI|MGI:1916837 Pcgf3 "polycomb group ring finger 3" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
 Identities = 36/84 (42%), Positives = 50/84 (59%)

Query:    12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
             L  K+K   I A +TC +C+  L DATT++ECLHTFCR C+   +  EE   CP C I +
Sbjct:     2 LTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59

Query:    72 G-CVPLEKLRPDHTLQDVRAKIFP 94
                 PL+ +  D T+QD+  K+ P
Sbjct:    60 HQSHPLQYIGHDRTMQDIVYKLVP 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AY3	DRIP2_ARATH	6, ., 3, ., 2, ., -	0.5920	0.9342	0.9809	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023861001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (430 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-10
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	1e-09
smart00184	40	smart00184, RING, Ring finger	2e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-08
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-04
COG5222	427	COG5222, COG5222, Uncharacterized conserved protei	0.003

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
           CPIC    R+   +  C H FCR CI DK        CP+C   +
Sbjct: 1  ECPICLEEFREPVVLLPCGHVFCRSCI-DKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67
          CPIC    +D  TI  C H FC KCI     +     CP+C
Sbjct: 1  CPICLEEPKDPVTILPCGHLFCSKCI-LSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67
          CPIC         I  C HTFCR CI  K  +     CP+C
Sbjct: 1  CPICLEEYLKDPVILPCGHTFCRSCI-RKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
           CPIC  LLRD   ++ C H FCR+CI   +  ++   CP+C 
Sbjct: 4  ECPICLDLLRDPVVLTPCGHVFCRECILRYL--KKKSKCPICR 44

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 26 TCPICNTLL--RDATTISECLHTFCRKCIYDKISDEEIECCPVC 67
           CPIC       +   +  C H F ++C+   +       CP+C
Sbjct: 2  ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWL--RSSNTCPLC 43

Length = 46

>gnl|CDD|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 25  MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHT 84
           + CP+C+ LLR+      C HTFC +CI   + D + + CP C+     V L+ L PD  
Sbjct: 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFK-CPNCSRKD--VLLDGLTPDID 331

Query: 85  LQDVRAKIFPLKRRKV 100
            +    K    +R+KV
Sbjct: 332 KKLEVEKALKKQRKKV 347

Length = 427

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
KOG2660	331	consensus Locus-specific chromosome binding protei	99.88
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.17
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	99.14
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.1
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.04
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.0
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.93
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.91
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.89
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.81
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.74
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.72
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.64
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.52
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.51
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.47
PHA02929	238	N1R/p28-like protein; Provisional	98.46
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.45
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.43
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.42
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.4
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.29
PHA02926	242	zinc finger-like protein; Provisional	98.23
PF14634	44	zf-RING_5: zinc-RING finger domain	98.21
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.15
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.99
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.98
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.97
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.94
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.92
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.79
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.62
COG5152	259	Uncharacterized conserved protein, contains RING a	97.59
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	97.45
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.34
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.31
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.11
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.04
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.98
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.92
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.52
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.48
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.31
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.26
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.89
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.58
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.26
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.14
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.12
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.12
KOG2660	331	consensus Locus-specific chromosome binding protei	94.93
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.76
COG5219	1525	Uncharacterized conserved protein, contains RING Z	94.75
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.57
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.35
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.2
PF04641	260	Rtf2: Rtf2 RING-finger	93.87
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	93.73
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	93.69
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.55
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	93.54
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	93.5
KOG4739	233	consensus Uncharacterized protein involved in syna	93.48
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.42
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	93.39
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.29
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	92.97
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	92.93
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	92.59
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	92.34
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	91.71
KOG3039	303	consensus Uncharacterized conserved protein [Funct	90.62
PF13765	49	PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2V	90.61
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	90.36
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	90.28
KOG3002	299	consensus Zn finger protein [General function pred	90.1
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	89.71
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.59
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	88.31
PHA03096	284	p28-like protein; Provisional	88.14
KOG1941	518	consensus Acetylcholine receptor-associated protei	87.88
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	87.76
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	86.44
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	85.38
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	85.09
COG5175	480	MOT2 Transcriptional repressor [Transcription]	84.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.42
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	83.1
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	82.87
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	82.74
KOG4445	368	consensus Uncharacterized conserved protein, conta	80.32

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=99.88  E-value=8.7e-24  Score=210.39  Aligned_cols=320  Identities=22%  Similarity=0.207  Sum_probs=206.2

Q ss_pred             hhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCc-CCCCCCCChHHHHHHHHH
Q 013553           14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        14 ~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~-~~~~lr~n~~L~~Lv~kl   92 (441)
                      ..+....+...++|.+|.+||.+++|+.+|+||||++||..++..  ...||.|...++.. ++..++.|..|++|+.++
T Consensus         5 ~~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen    5 RRVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hhhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            456677789999999999999999999999999999999999975  68999999998854 588999999999999999


Q ss_pred             cCCchhcccCCCCCCccccCccccCcccccceeccCCcccccccccccchHHHHHHHHhhcCCCCCCCCCCCCCCccCCC
Q 013553           93 FPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDN  172 (441)
Q Consensus        93 ~p~~~~k~~a~Ed~~~vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~ra~alr~~~~~~~~~~~ke~d~~~d~  172 (441)
                      +|...+.+..                ....+..+.++..++.+.+++                   ..+.+.++.-.+++
T Consensus        83 VPgl~erE~k----------------~~rdFy~~~~~~d~~~~~~~~-------------------~~~~~~~ek~~~t~  127 (331)
T KOG2660|consen   83 VPGLQEREMK----------------RRRDFYKSRPLVDVPAGDTPE-------------------RGHVLGEEKVPDTS  127 (331)
T ss_pred             cchHHHHHHH----------------HHHHHHHhCCCcccCCCCCcc-------------------cccccCcccCCCch
Confidence            9977633321                011111122233333343333                   12233334445556


Q ss_pred             CCCCCChhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCcccchhhHHhhhccCCCCCCCCCCcccCCC
Q 013553          173 EDGASSPETLNKLSQNVKPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAKAEP  252 (441)
Q Consensus       173 ~~~~s~p~~~~k~~~~~~~~~~~~~~e~s~~~~~~~~~~~~e~~~~k~dl~~pln~lve~a~~~k~~~s~~~~~~~~~~~  252 (441)
                      .++.+.+..--++.+++.-++...              +-.|.++...+||  .+++.-.|..|..   .++...  ..+
T Consensus       128 ~~~~s~~l~~~~~~~~r~d~~~~~--------------~~~e~~~~~k~l~--~~fvrcsa~~Tv~---hlkkfl--~~k  186 (331)
T KOG2660|consen  128 DEIASLSLEVEDFKQNRLDEQVSV--------------GLDEGKDTLKDLV--RRFLRCSAAATVN---HLKKFL--RKK  186 (331)
T ss_pred             hhhhccccchhhcccchhhhhhhc--------------CCCcccccccccc--cceEeccHHHHHH---HHHHHH--HHH
Confidence            667777777778888888222221              3345556667777  3444333322220   000000  000


Q ss_pred             CCCCCccccccccccccccccccCCCC-CCCCCCCCc--cccccchhhhhhhhhhcccCCCCCCchhhccccccccCCCC
Q 013553          253 TTITDNEAQVHKTKNKEDKCKSKSGNK-NNNPDPTTS--ETINPKRLRRIRRKTAAAFGDSNISPQAVLDAAGAKYERRN  329 (441)
Q Consensus       253 ~~~~~~~~~~~~~k~~e~~~~~k~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (441)
                      +               .| ...+.+-+ -.+ ...-.  .+++  ..+.+++.++      +.++  .+-.-..+..++ 
T Consensus       187 ~---------------~~-~~~~~~idi~~~-d~~l~~~~TLk--~i~~~~~~~~------r~~p--L~l~y~v~p~v~-  238 (331)
T KOG2660|consen  187 M---------------DN-LSNKSEIDILCE-EELLGDYYTLK--DIAYAYRWRS------RDPP--LPLRYRVKPKVS-  238 (331)
T ss_pred             h---------------cc-ccchhhheeecC-Cccccchhhhh--hhhhhhcccc------cCCc--ceeEeccccccc-
Confidence            0               00 00000000 001 11111  1122  1223333321      1211  111122122222 


Q ss_pred             CCeeEEEeccccccCCCCCCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHHHhhc
Q 013553          330 GPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQT  409 (441)
Q Consensus       330 ~~~wf~l~~~~~q~~~~~lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~w~~~  409 (441)
                         ||.|.   +|.++..|++++++|.++.+|+.|++ |++|++-++.+.++.+ ++       .|++||+-+.+.|..+
T Consensus       239 ---~~~L~---~~~~~~s~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~t~~~-~~-------~pt~~~~~~~~~~~~~  303 (331)
T KOG2660|consen  239 ---RLKLT---REAEEESLAGEFASLSVSDKANSPAA-IPATSSPEPSPSTPPR-SE-------HPTVPLPSSTLRGSYT  303 (331)
T ss_pred             ---cceee---ccccccccccchhhhhccccCCCccc-cccccccccCcCCCcc-CC-------CCcccCchhhhccccc
Confidence               99999   99999999999999999999999999 9999999999999988 66       8999999999999999


Q ss_pred             CCCCCcccccCCCCccceEEEEeeecCCCC
Q 013553          410 ASTSDRVPAMIGSSAKDFVMVLTYARKVRD  439 (441)
Q Consensus       410 ~~~~~~~~~~~~s~~~~~vm~l~y~r~~~~  439 (441)
                      .+...     .++|++.|+|++.|.++..+
T Consensus       304 ~~~~~-----~~~s~~~~~~~~~~~~~~~~  328 (331)
T KOG2660|consen  304 DAEGF-----NRKSSGHRPRKKIVSGSSKP  328 (331)
T ss_pred             ccccc-----cCcccccCCceeeecCCCCC
Confidence            76332     88899999999999998764

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.17  E-value=1.6e-11  Score=89.33  Aligned_cols=40  Identities=38%  Similarity=0.977  Sum_probs=31.6

Q ss_pred             ccccccccccceecCCCCCcchHHHHHHhhccCCC--CCCCCC
Q 013553           27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEI--ECCPVC   67 (441)
Q Consensus        27 CpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~--~~CP~C   67 (441)
                      ||||+++|.+||++ +|||+||..||..++.....  +.||.|
T Consensus         1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999 89999999999999876533  689987

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=7.3e-12  Score=126.45  Aligned_cols=96  Identities=28%  Similarity=0.563  Sum_probs=82.3

Q ss_pred             hHHHhhhchhhhhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCC
Q 013553            3 VEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPD   82 (441)
Q Consensus         3 v~~~m~~~~~~~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n   82 (441)
                      +-+...++.....+....|..++.|+||+++|+..+++..|+|.||+.||+..+.. +...||.||..+  ...+.|+.|
T Consensus        22 ~p~~~~~d~~Ei~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l--~SkrsLr~D   98 (381)
T KOG0311|consen   22 SPSSYNGDPSEIMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKL--VSKRSLRID   98 (381)
T ss_pred             ChhhhcCCchhheecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhc--cccccCCCC
Confidence            34555566666677888899999999999999999999999999999999999885 668999999987  577899999


Q ss_pred             hHHHHHHHHHcCCchhccc
Q 013553           83 HTLQDVRAKIFPLKRRKVK  101 (441)
Q Consensus        83 ~~L~~Lv~kl~p~~~~k~~  101 (441)
                      .....|+.++|+.....+.
T Consensus        99 p~fdaLis~i~~sie~~e~  117 (381)
T KOG0311|consen   99 PNFDALISKIYPSIEEYEA  117 (381)
T ss_pred             ccHHHHHHHHhccHHHHhc
Confidence            9999999999998665544

>smart00504 Ubox Modified RING finger domain

Probab=99.10  E-value=1e-10  Score=90.17  Aligned_cols=62  Identities=23%  Similarity=0.340  Sum_probs=54.0

Q ss_pred             cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHH
Q 013553           24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAK   91 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~k   91 (441)
                      ++.||||++++.+|+.+ +|||+||+.||..|+..  ...||.|+..+   ...++.+|..|++.++.
T Consensus         1 ~~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~--~~~cP~~~~~~---~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLS--HGTDPVTGQPL---THEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHH--CCCCCCCcCCC---ChhhceeCHHHHHHHHh
Confidence            47899999999999999 89999999999999975  46899999886   45678899999887764

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.04  E-value=1.7e-10  Score=119.91  Aligned_cols=75  Identities=24%  Similarity=0.558  Sum_probs=64.1

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      ..+.|+..+.|+||+++|.+|+++ +|||+||..||..++...  ..||+|+..+.   ...++.|..|.+|++.|....
T Consensus        19 ~l~~Le~~l~C~IC~d~~~~Pvit-pCgH~FCs~CI~~~l~~~--~~CP~Cr~~~~---~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        19 SLYPLDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQ--PKCPLCRAEDQ---ESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             cccccccccCCCcCchhhhCccCC-CCCCchhHHHHHHHHhCC--CCCCCCCCccc---cccCccchHHHHHHHHHHHhh
Confidence            346788899999999999999988 899999999999998753  47999999863   457899999999999996544


Q ss_pred             h
Q 013553           97 R   97 (441)
Q Consensus        97 ~   97 (441)
                      .
T Consensus        93 ~   93 (397)
T TIGR00599        93 P   93 (397)
T ss_pred             H
Confidence            4

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.00  E-value=1e-10  Score=92.34  Aligned_cols=63  Identities=27%  Similarity=0.717  Sum_probs=36.3

Q ss_pred             cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHH
Q 013553           20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVR   89 (441)
Q Consensus        20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv   89 (441)
                      .|+..+.|++|.++|++||.+..|.|.||..||...+..    .||+|+.+   +...+++.|.+|++++
T Consensus         3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~P---aw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTP---AWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B----S-SS----HHHHHHH
T ss_pred             HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCCh---HHHHHHHhhhhhhccC
Confidence            466779999999999999988899999999999776643    49999988   5678999999999875

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.93  E-value=8.2e-10  Score=89.06  Aligned_cols=68  Identities=22%  Similarity=0.308  Sum_probs=54.5

Q ss_pred             ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013553           23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL   95 (441)
Q Consensus        23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~   95 (441)
                      +.|.||||+++|.+||.+ +|||+|++.||..|+.. ....||.|+..+   ....+.+|..|++.++.|...
T Consensus         3 ~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~-~~~~~P~t~~~l---~~~~l~pn~~Lk~~I~~~~~~   70 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQ-NGGTDPFTRQPL---SESDLIPNRALKSAIEEWCAE   70 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCT-TSSB-TTT-SB----SGGGSEE-HHHHHHHHHHHHH
T ss_pred             cccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHc-CCCCCCCCCCcC---CcccceECHHHHHHHHHHHHH
Confidence            579999999999999999 79999999999999985 468999999886   355789999999999998543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.91  E-value=7.4e-10  Score=104.81  Aligned_cols=54  Identities=31%  Similarity=0.596  Sum_probs=44.5

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhcc--------------CCCCCCCCCCccC
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD--------------EEIECCPVCNIDL   71 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~--------------~~~~~CP~CR~~l   71 (441)
                      +.-++.+.+.|+||++.+.+|+.+ .|||.||..||..|+..              .....||+|+..+
T Consensus        11 ~~~~~~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I   78 (193)
T PLN03208         11 TLVDSGGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV   78 (193)
T ss_pred             eeccCCCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence            334456789999999999999999 79999999999988642              1346899999876

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.89  E-value=5.9e-10  Score=112.26  Aligned_cols=75  Identities=24%  Similarity=0.520  Sum_probs=64.0

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      .+..|...|.|-||.+||.-|+.+ +|+|+||.-||..++...  ..||.|...+   ....|+.|+.|.+|+.-|-...
T Consensus        16 slk~lD~lLRC~IC~eyf~ip~it-pCsHtfCSlCIR~~L~~~--p~CP~C~~~~---~Es~Lr~n~il~Eiv~S~~~~R   89 (442)
T KOG0287|consen   16 SLKTLDDLLRCGICFEYFNIPMIT-PCSHTFCSLCIRKFLSYK--PQCPTCCVTV---TESDLRNNRILDEIVKSLNFAR   89 (442)
T ss_pred             hhhhhHHHHHHhHHHHHhcCceec-cccchHHHHHHHHHhccC--CCCCceeccc---chhhhhhhhHHHHHHHHHHHHH
Confidence            455677889999999999999999 799999999999999754  6799999885   4567999999999999884444


Q ss_pred             h
Q 013553           97 R   97 (441)
Q Consensus        97 ~   97 (441)
                      .
T Consensus        90 ~   90 (442)
T KOG0287|consen   90 N   90 (442)
T ss_pred             H
Confidence            3

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3.3e-09  Score=99.85  Aligned_cols=72  Identities=31%  Similarity=0.680  Sum_probs=59.6

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      ..+.+.+.+.|+||+++|.+|+++ +|||+||+.||..++.  ....||.|+. ..  .  .+.+|..+.+++..+....
T Consensus         6 ~~~~~~~~~~C~iC~~~~~~p~~l-~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~--~--~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen    6 LLEVLQEELTCPICLEYFREPVLL-PCGHNFCRACLTRSWE--GPLSCPVCRP-PS--R--NLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             hhhhccccccChhhHHHhhcCccc-cccchHhHHHHHHhcC--CCcCCcccCC-ch--h--ccCccHHHHHHHHHHHhcC
Confidence            345567889999999999999777 8999999999998887  5589999996 32  1  6779999999999995443

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.74  E-value=5.6e-09  Score=74.23  Aligned_cols=39  Identities=44%  Similarity=1.077  Sum_probs=32.8

Q ss_pred             ccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCC
Q 013553           27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC   67 (441)
Q Consensus        27 CpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~C   67 (441)
                      |+||++.+.+|+.+..|||+||..||..++..  ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence            89999999999655589999999999999886  3789987

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.72  E-value=7e-09  Score=73.91  Aligned_cols=41  Identities=34%  Similarity=0.930  Sum_probs=36.7

Q ss_pred             ccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCC
Q 013553           27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC   67 (441)
Q Consensus        27 CpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~C   67 (441)
                      |+||++.+.+|+++.+|||+||..||..++...+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999999999955599999999999999986567889988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.64  E-value=1.7e-08  Score=100.27  Aligned_cols=74  Identities=23%  Similarity=0.509  Sum_probs=60.2

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCch
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKR   97 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~~   97 (441)
                      ..-|...+.|-||..+|.-|+.+ .|||+||.-||..++..+  ..||+||.+.   ...-++.+..+..+++.|-....
T Consensus        19 L~~LDs~lrC~IC~~~i~ip~~T-tCgHtFCslCIR~hL~~q--p~CP~Cr~~~---~esrlr~~s~~~ei~es~~~~r~   92 (391)
T COG5432          19 LKGLDSMLRCRICDCRISIPCET-TCGHTFCSLCIRRHLGTQ--PFCPVCREDP---CESRLRGSSGSREINESHARNRD   92 (391)
T ss_pred             hhcchhHHHhhhhhheeecceec-ccccchhHHHHHHHhcCC--CCCccccccH---HhhhcccchhHHHHHHhhhhccH
Confidence            34456679999999999999999 799999999999999754  6799999884   34457788888888888754444

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3.9e-08  Score=95.01  Aligned_cols=49  Identities=31%  Similarity=0.798  Sum_probs=43.0

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCC-CCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEE-IECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~-~~~CP~CR~~l   71 (441)
                      -.+|.|.||++.-++||.+ .|||.||..||++|+.... ...||+|+..+
T Consensus        45 ~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~V   94 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEV   94 (230)
T ss_pred             CCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence            4579999999999999999 6999999999999987543 47889999875

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.51  E-value=9e-08  Score=67.33  Aligned_cols=44  Identities=34%  Similarity=0.885  Sum_probs=38.2

Q ss_pred             cccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553           26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID   70 (441)
Q Consensus        26 tCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~   70 (441)
                      .|+||++.+.+++.+..|||.||..|+..|+.. ....||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence            599999999888888669999999999999875 45789999864

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=8.4e-08  Score=95.30  Aligned_cols=48  Identities=27%  Similarity=0.678  Sum_probs=42.4

Q ss_pred             ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+....|.||++-..+|.-+ +|||.||..||..|....  ..||+||..+
T Consensus       236 ~~a~~kC~LCLe~~~~pSaT-pCGHiFCWsCI~~w~~ek--~eCPlCR~~~  283 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSAT-PCGHIFCWSCILEWCSEK--AECPLCREKF  283 (293)
T ss_pred             CCCCCceEEEecCCCCCCcC-cCcchHHHHHHHHHHccc--cCCCcccccC
Confidence            34569999999999999999 899999999999999754  4599999875

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.46  E-value=1.1e-07  Score=93.00  Aligned_cols=48  Identities=31%  Similarity=0.685  Sum_probs=38.8

Q ss_pred             cccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+...|+||++.+.++       ..+.+|+|.||..||..|+..  ...||+||..+
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~  226 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPF  226 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEe
Confidence            4568999999987654       133479999999999999864  46899999876

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.45  E-value=7.8e-08  Score=70.59  Aligned_cols=37  Identities=30%  Similarity=0.854  Sum_probs=23.2

Q ss_pred             cccccccccc----ceecCCCCCcchHHHHHHhhccC--CCCCCC
Q 013553           27 CPICNTLLRD----ATTISECLHTFCRKCIYDKISDE--EIECCP   65 (441)
Q Consensus        27 CpIClelf~d----PvtLs~CgHtFC~~CI~~~l~~~--~~~~CP   65 (441)
                      ||||.+ |.+    |+.| .|||+||+.||..+....  ..+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 888    9999 699999999999988754  467887

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.43  E-value=1.5e-07  Score=70.23  Aligned_cols=45  Identities=31%  Similarity=0.760  Sum_probs=38.8

Q ss_pred             cccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553           24 CMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +..|.||++.+.+++.+ +|||. ||..|+..++.  ....||.||..+
T Consensus         2 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i   47 (50)
T PF13920_consen    2 DEECPICFENPRDVVLL-PCGHLCFCEECAERLLK--RKKKCPICRQPI   47 (50)
T ss_dssp             HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHH--TTSBBTTTTBB-
T ss_pred             cCCCccCCccCCceEEe-CCCChHHHHHHhHHhcc--cCCCCCcCChhh
Confidence            57899999999999988 89999 99999999987  447899999875

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.42  E-value=8.9e-08  Score=69.57  Aligned_cols=40  Identities=35%  Similarity=0.908  Sum_probs=32.8

Q ss_pred             cccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCC
Q 013553           26 TCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCN   68 (441)
Q Consensus        26 tCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR   68 (441)
                      .|+||++.|.   ..+.+ +|||.||..||..|+...  ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~~--~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKRN--NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHhC--CcCCccC
Confidence            5999999884   45555 799999999999999764  6899996

...

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.4e-07  Score=88.00  Aligned_cols=48  Identities=29%  Similarity=0.832  Sum_probs=39.6

Q ss_pred             cccccccccccccccc--ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRD--ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~d--PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      -+..+.||||++-+.+  |+.+ .|||.||..||...+...  ..||+|+..+
T Consensus       128 ~~~~~~CPiCl~~~sek~~vsT-kCGHvFC~~Cik~alk~~--~~CP~C~kkI  177 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVPVST-KCGHVFCSQCIKDALKNT--NKCPTCRKKI  177 (187)
T ss_pred             cccccCCCceecchhhcccccc-ccchhHHHHHHHHHHHhC--CCCCCccccc
Confidence            3556999999999864  5566 899999999999988754  6799999765

>smart00184 RING Ring finger

Probab=98.29  E-value=6e-07  Score=60.90  Aligned_cols=39  Identities=44%  Similarity=1.075  Sum_probs=34.3

Q ss_pred             ccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCC
Q 013553           27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC   67 (441)
Q Consensus        27 CpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~C   67 (441)
                      |+||++....++.+ +|||.||..|+..|+. .....||.|
T Consensus         1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~-~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLK-SGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEe-cCCChHHHHHHHHHHH-hCcCCCCCC
Confidence            89999999899888 8999999999999987 345679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PHA02926 zinc finger-like protein; Provisional

Probab=98.23  E-value=7.3e-07  Score=86.13  Aligned_cols=50  Identities=24%  Similarity=0.615  Sum_probs=38.7

Q ss_pred             cccccccccccccccc--------eecCCCCCcchHHHHHHhhccC----CCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDA--------TTISECLHTFCRKCIYDKISDE----EIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dP--------vtLs~CgHtFC~~CI~~~l~~~----~~~~CP~CR~~l   71 (441)
                      .++..|+||++...++        -.+.+|+|.||..||..|....    ....||+||..+
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f  229 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF  229 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence            4579999999987543        1344899999999999998642    235799999875

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.21  E-value=1.2e-06  Score=64.03  Aligned_cols=42  Identities=29%  Similarity=0.740  Sum_probs=33.0

Q ss_pred             ccccccccc--ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCc
Q 013553           26 TCPICNTLL--RDATTISECLHTFCRKCIYDKISDEEIECCPVCNI   69 (441)
Q Consensus        26 tCpIClelf--~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~   69 (441)
                      .|++|.+.+  ..+..++.|||+||..|+....  .....||+|+.
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence            489999988  3344444899999999998887  34578999983

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=8.8e-07  Score=93.82  Aligned_cols=48  Identities=29%  Similarity=0.647  Sum_probs=42.2

Q ss_pred             cccccccccccccceecCCCCCcchHHHHHHhhccC---CCCCCCCCCccCC
Q 013553           24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE---EIECCPVCNIDLG   72 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~---~~~~CP~CR~~l~   72 (441)
                      ...||||+....-|+.+ .|||.||..||..+|...   +...||+|+..++
T Consensus       186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~  236 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT  236 (513)
T ss_pred             CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence            79999999999999999 599999999998888753   3478999998874

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.99  E-value=5.7e-06  Score=83.71  Aligned_cols=48  Identities=27%  Similarity=0.620  Sum_probs=36.4

Q ss_pred             ccccccccc--ccccce--ecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           24 CMTCPICNT--LLRDAT--TISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        24 ~LtCpICle--lf~dPv--tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      +..||+|..  ++..-+  .+.+|||.||..|+...+.. +...||.|+..+.
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lr   54 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLR   54 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccc
Confidence            468999988  444332  33379999999999998864 5568999998863

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=2.8e-06  Score=83.69  Aligned_cols=48  Identities=25%  Similarity=0.614  Sum_probs=40.6

Q ss_pred             ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .++.|.||++....|..+ +|||.||..||...+.......||+||...
T Consensus       214 ~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~k~~~CplCRak~  261 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKKKYEFCPLCRAKV  261 (271)
T ss_pred             cccceeeeecccCCcccc-cccchhhHHHHHHHHHhhccccCchhhhhc
Confidence            478899999999999999 899999999998844434455699999764

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=2.2e-06  Score=94.36  Aligned_cols=56  Identities=29%  Similarity=0.734  Sum_probs=48.1

Q ss_pred             hhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCC
Q 013553           16 VKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC   73 (441)
Q Consensus        16 v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~   73 (441)
                      .....+..-++||+|..-+.+.+.+ .|||.||..|+...+.. ....||.|+..||.
T Consensus       635 EElk~yK~~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  635 EELKEYKELLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYET-RQRKCPKCNAAFGA  690 (698)
T ss_pred             HHHHHHHhceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence            4566678889999999999999999 79999999999887764 55789999999863

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.94  E-value=7.2e-06  Score=82.13  Aligned_cols=70  Identities=34%  Similarity=0.634  Sum_probs=57.1

Q ss_pred             ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCch
Q 013553           25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKR   97 (441)
Q Consensus        25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~~   97 (441)
                      |.||+|..++++|+.+..|+|+||..||...+.+ ..+.||.|...-  .-++.|.+|...+.-+++++...+
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~rkd--vlld~l~pD~dk~~EvE~~lkkq~  344 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSRKD--VLLDGLTPDIDKKLEVEKALKKQR  344 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccccc--chhhccCccHHHHHHHHHHHHHHH
Confidence            9999999999999999889999999999877764 569999997531  245678888888888888866433

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.92  E-value=6e-06  Score=64.07  Aligned_cols=45  Identities=29%  Similarity=0.575  Sum_probs=33.6

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCC
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPV   66 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~   66 (441)
                      ...+.|||.+..|.+||....|+|+|.+..|..++.......||+
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            346999999999999999778999999999999996667789998

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=6.7e-06  Score=86.02  Aligned_cols=74  Identities=26%  Similarity=0.538  Sum_probs=54.9

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcC-CCCCC-CChHHHHHHHHHcCC
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVP-LEKLR-PDHTLQDVRAKIFPL   95 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~-~~~lr-~n~~L~~Lv~kl~p~   95 (441)
                      +.+..+|.|.||...|..||++ +|||+||..||.+.+.  ....||.|+..+.... ..... .|+.+..++.+|++.
T Consensus        79 ~~~~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLD--QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             ccccchhhhhhhHhhcCCCccc-cccccccHHHHHHHhc--cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            3457789999999999999999 8999999999988665  4478999998874211 11111 255556777777543

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.79  E-value=1.6e-05  Score=64.40  Aligned_cols=41  Identities=29%  Similarity=0.724  Sum_probs=32.2

Q ss_pred             cccccccccc------------cceecCCCCCcchHHHHHHhhccCCCCCCCCCC
Q 013553           26 TCPICNTLLR------------DATTISECLHTFCRKCIYDKISDEEIECCPVCN   68 (441)
Q Consensus        26 tCpIClelf~------------dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR   68 (441)
                      .|.||++-|.            -++.+..|||.|...||..|+...  ..||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN--NTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS--SB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC--CcCCCCC
Confidence            4999999982            344555799999999999999753  5899997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=3.4e-05  Score=76.60  Aligned_cols=50  Identities=24%  Similarity=0.589  Sum_probs=43.7

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ....+||+|.+.-..|.++.+|+|.||..||.........++||.|....
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~  286 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV  286 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence            44689999999999999997799999999998877655679999999764

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.59  E-value=3.2e-05  Score=73.67  Aligned_cols=69  Identities=26%  Similarity=0.470  Sum_probs=51.5

Q ss_pred             hhhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHH
Q 013553           13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRA   90 (441)
Q Consensus        13 ~~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~   90 (441)
                      +.....|.|  -|.|-||..-|..||.+ .|||.||..|....+..  ...|-+|....    ...+.....++.|+.
T Consensus       187 v~~~~~e~I--PF~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~k--g~~C~~Cgk~t----~G~f~V~~d~~kmL~  255 (259)
T COG5152         187 VISGPGEKI--PFLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQK--GDECGVCGKAT----YGRFWVVSDLQKMLN  255 (259)
T ss_pred             cccCCCCCC--ceeehhchhhccchhhh-hcchhHHHHHHHHHhcc--CCcceecchhh----ccceeHHhhHHHHHh
Confidence            444444544  48999999999999999 89999999999888764  36799998763    334555666666554

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=97.45  E-value=0.00015  Score=74.15  Aligned_cols=93  Identities=30%  Similarity=0.468  Sum_probs=71.5

Q ss_pred             CCCCeeEEEeccccccC-----------CCCCCCCCcceeeeeC-CCchHHHHHHHHHhhc--------------CCCCh
Q 013553          328 RNGPIWFSLVASEDQRG-----------SLPLPQISSSYLRIKD-RNIPVSFIQKYLMMKL--------------DLPSE  381 (441)
Q Consensus       328 ~~~~~wf~l~~~~~q~~-----------~~~lpqi~~~y~rikd-~~~~~~~~~kyl~~kl--------------~l~~e  381 (441)
                      ...-|=|.|++-.+...           ...||.|+....|.-= +-|.|+=|.-|++.||              .+..|
T Consensus       211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~  290 (331)
T PF11816_consen  211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE  290 (331)
T ss_pred             CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence            44667899998763221           1246667777777654 4468999999999999              35678


Q ss_pred             hhHHHHhcCccccCCCcchhHHH-HHhhcCCCCCcccccCCCCccceEEEEeeecCC
Q 013553          382 SEVEIKCMGQPVIPTLQLYNLVD-LWLQTASTSDRVPAMIGSSAKDFVMVLTYARKV  437 (441)
Q Consensus       382 ~eve~~c~g~~~~~~~~l~~~~~-~w~~~~~~~~~~~~~~~s~~~~~vm~l~y~r~~  437 (441)
                      .-+||.|.||.|.|.|||.-|+- +|-+.+               |  |||+|+|+.
T Consensus       291 e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~---------------d--i~L~YR~k~  330 (331)
T PF11816_consen  291 EWLELLCNGQVLPPDMTLATVRTFIWKSSG---------------D--IVLHYRRKG  330 (331)
T ss_pred             ceEEEEeCCeEcCCcCCHHHHHHhhccCCC---------------e--EEEEEEecC
Confidence            89999999999999999999999 476543               2  789999975

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.34  E-value=0.00014  Score=76.25  Aligned_cols=69  Identities=32%  Similarity=0.736  Sum_probs=52.0

Q ss_pred             cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553           20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl   92 (441)
                      .+.+.+.|++|...+.+|+..+.|||.||..|+..|...  +..||.|+..+.  ....+.....++..+.++
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~--~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELT--QAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccc--hhhccCchHHHHHHHHhc
Confidence            377889999999999999995479999999999999986  578999987753  222333344445555544

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=9.6e-05  Score=80.25  Aligned_cols=48  Identities=25%  Similarity=0.541  Sum_probs=41.2

Q ss_pred             cccccccccccccccc-----ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRD-----ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~d-----PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ......|+||.+.+..     |..+ +|+|.||..|+..|+..  ...||.||..+
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er--~qtCP~CR~~~  340 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFER--QQTCPTCRTVL  340 (543)
T ss_pred             hhcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHH--hCcCCcchhhh
Confidence            3457899999999998     6777 89999999999999975  46899999854

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00021  Score=71.96  Aligned_cols=45  Identities=27%  Similarity=0.707  Sum_probs=39.6

Q ss_pred             ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      -.|+||+.-..-|+.+ .|+|.||.-||...+.. +...|++||.++
T Consensus         8 ~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~n-dk~~CavCR~pi   52 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNL-YCFHKFCYICIKGSYKN-DKKTCAVCRFPI   52 (324)
T ss_pred             CcceeeeccCCcCccc-cccchhhhhhhcchhhc-CCCCCceecCCC
Confidence            4699999999999888 89999999999887765 557899999875

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0004  Score=71.58  Aligned_cols=46  Identities=35%  Similarity=0.685  Sum_probs=38.3

Q ss_pred             ccccccccccc--cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           25 MTCPICNTLLR--DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        25 LtCpIClelf~--dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+|.||++-|.  +-+.+++|.|.|-..||..|+... ...||+|+.++
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di  277 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDI  277 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcC
Confidence            49999999885  555556999999999999999864 45799999764

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00038  Score=69.93  Aligned_cols=45  Identities=27%  Similarity=0.594  Sum_probs=38.9

Q ss_pred             cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      -|.|-||..+|..||.+ .|+|+||..|....+..  ...|.+|....
T Consensus       241 Pf~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk--~~~c~vC~~~t  285 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQK--GEKCYVCSQQT  285 (313)
T ss_pred             Cccccccccccccchhh-cCCceeehhhhcccccc--CCcceeccccc
Confidence            36799999999999999 79999999999887754  36799999764

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.92  E-value=0.00085  Score=56.25  Aligned_cols=48  Identities=25%  Similarity=0.540  Sum_probs=36.6

Q ss_pred             cccccccccccc------------cceecCCCCCcchHHHHHHhhccC-CCCCCCCCCccC
Q 013553           24 CMTCPICNTLLR------------DATTISECLHTFCRKCIYDKISDE-EIECCPVCNIDL   71 (441)
Q Consensus        24 ~LtCpIClelf~------------dPvtLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l   71 (441)
                      +-.|.||...|.            -|+.+-.|+|.|-..||..|+..+ ....||+||...
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w   81 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW   81 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence            456666666553            366666799999999999999864 347999999764

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.52  E-value=0.0011  Score=71.13  Aligned_cols=50  Identities=32%  Similarity=0.773  Sum_probs=41.7

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhcc---CCCCCCCCCCccCC
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD---EEIECCPVCNIDLG   72 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~---~~~~~CP~CR~~l~   72 (441)
                      .....|.+|.+.-.+++.. .|.|+||+.||.++...   ....+||.|...+.
T Consensus       534 k~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            3468899999999999999 79999999999776542   34589999998864

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.0022  Score=66.37  Aligned_cols=47  Identities=21%  Similarity=0.592  Sum_probs=38.4

Q ss_pred             cccccccccccccc-------------cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLR-------------DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~-------------dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ..+-+|.||.+-+.             .|..+ +|||.|-..|+..|+..+  -+||.||.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERq--QTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQ--QTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhc--cCCCcccCcc
Confidence            45789999998743             23678 899999999999999754  5799999774

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0019  Score=66.67  Aligned_cols=50  Identities=24%  Similarity=0.685  Sum_probs=40.0

Q ss_pred             cccccccccccccccce-------ecCCCCCcchHHHHHHhhccCC-----CCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDAT-------TISECLHTFCRKCIYDKISDEE-----IECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dPv-------tLs~CgHtFC~~CI~~~l~~~~-----~~~CP~CR~~l   71 (441)
                      ..+..|-||++...+..       ++..|.|.||..||..|-....     ...||.||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            34789999999887776       2336999999999999875433     58999999764

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.0024  Score=64.54  Aligned_cols=47  Identities=26%  Similarity=0.576  Sum_probs=37.7

Q ss_pred             cccccccccccc--cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           24 CMTCPICNTLLR--DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        24 ~LtCpIClelf~--dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ...|.||+.-|.  +-+...+|.|.|-..|+..|+.. -...||+||..+
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~i  371 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAI  371 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-hcccCCccCCCC
Confidence            478999999774  33444489999999999999974 346899999875

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.89  E-value=0.0046  Score=65.14  Aligned_cols=36  Identities=22%  Similarity=0.819  Sum_probs=32.3

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhcc
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD   58 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~   58 (441)
                      ++++.|+||..+|++|+++ +|+|+.|+.|.......
T Consensus         2 eeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~~~   37 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIIL-PCSHNLCQACARNILVQ   37 (699)
T ss_pred             cccccCceehhhccCceEe-ecccHHHHHHHHhhccc
Confidence            5789999999999999999 89999999999766554

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.58  E-value=0.0055  Score=63.99  Aligned_cols=47  Identities=26%  Similarity=0.637  Sum_probs=38.7

Q ss_pred             cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .-.|.||-+-=++-..- +|||..|..|+..|....+.-.||.||..+
T Consensus       369 FeLCKICaendKdvkIE-PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI  415 (563)
T KOG1785|consen  369 FELCKICAENDKDVKIE-PCGHLLCTSCLAAWQDSDEGQTCPFCRCEI  415 (563)
T ss_pred             HHHHHHhhccCCCcccc-cccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence            34688998876665555 899999999999998776678999999876

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.26  E-value=0.0072  Score=63.90  Aligned_cols=47  Identities=32%  Similarity=0.696  Sum_probs=38.2

Q ss_pred             cccccccccccccccccce----ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           20 TIAACMTCPICNTLLRDAT----TISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        20 ~Lee~LtCpIClelf~dPv----tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+.+.-+||||++-+-.-+    ++ .|.|+|-..|+..|+.    ..||+||...
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~-~c~Hsfh~~cl~~w~~----~scpvcR~~q  221 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTI-LCNHSFHCSCLMKWWD----SSCPVCRYCQ  221 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeee-ecccccchHHHhhccc----CcChhhhhhc
Confidence            3556789999999987665    45 6999999999999875    4699999653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.0095  Score=62.41  Aligned_cols=61  Identities=28%  Similarity=0.580  Sum_probs=44.4

Q ss_pred             ccccccccccccccce----ecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHH
Q 013553           23 ACMTCPICNTLLRDAT----TISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQ   86 (441)
Q Consensus        23 e~LtCpIClelf~dPv----tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~   86 (441)
                      ...+||||++-+.-|.    .+..|||-|-..||..|+.......||.|...   +-.+.+++...++
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k---atkr~i~~e~alR   67 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK---ATKRQIRPEYALR   67 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh---hHHHHHHHHHHHH
Confidence            3579999999876543    33379999999999999975456899999865   3445555544443

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.12  E-value=0.0065  Score=47.11  Aligned_cols=45  Identities=27%  Similarity=0.642  Sum_probs=38.0

Q ss_pred             ccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553           25 MTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        25 LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      -.|.||.+--.+.|.- -|||- .|..|-.+.++. .+-.||+||.++
T Consensus         8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi   53 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKA-LHGCCPICRAPI   53 (62)
T ss_pred             cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHc-cCCcCcchhhHH
Confidence            4699999999999888 59995 799999888774 567899999764

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.12  E-value=0.0058  Score=68.16  Aligned_cols=47  Identities=28%  Similarity=0.511  Sum_probs=36.7

Q ss_pred             cccccccccccccceecC--CCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           24 CMTCPICNTLLRDATTIS--ECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs--~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .-.||+|+.-+.+-....  .|+|.||..||..|.+..  .+||+||..|.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhh
Confidence            467899988776544332  599999999999998753  67999999875

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.93  E-value=0.022  Score=58.21  Aligned_cols=58  Identities=24%  Similarity=0.397  Sum_probs=51.7

Q ss_pred             CCCCCCCcceeeeeCCCchHHHHHHHHHhhcC-CCChhhHHHHhcCccccCCCcchhHHH
Q 013553          346 LPLPQISSSYLRIKDRNIPVSFIQKYLMMKLD-LPSESEVEIKCMGQPVIPTLQLYNLVD  404 (441)
Q Consensus       346 ~~lpqi~~~y~rikd~~~~~~~~~kyl~~kl~-l~~e~eve~~c~g~~~~~~~~l~~~~~  404 (441)
                      .-|+.|=+.|||. ++.++|..|+|||..|++ +.+=.+|+|.|.++.+.-..||..+|-
T Consensus       158 ~~~k~l~~~fvrc-sa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~  216 (331)
T KOG2660|consen  158 DTLKDLVRRFLRC-SAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAY  216 (331)
T ss_pred             ccccccccceEec-cHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhh
Confidence            3455555889998 799999999999999999 999999999999999999999888777

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=0.017  Score=60.23  Aligned_cols=46  Identities=26%  Similarity=0.601  Sum_probs=35.1

Q ss_pred             ccccccccccc-----cceecCCCCCcchHHHHHHhhccCCC-CCCCCCCccCC
Q 013553           25 MTCPICNTLLR-----DATTISECLHTFCRKCIYDKISDEEI-ECCPVCNIDLG   72 (441)
Q Consensus        25 LtCpIClelf~-----dPvtLs~CgHtFC~~CI~~~l~~~~~-~~CP~CR~~l~   72 (441)
                      ..|.||-+++-     .|+.+  |||+|-..|+..|+..... ..||.|+..++
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~--cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGT--CGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             ceeeEeccCCccccccccccc--hhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            47999977663     33333  9999999999999986544 48999996553

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.75  E-value=0.013  Score=66.75  Aligned_cols=52  Identities=21%  Similarity=0.688  Sum_probs=40.8

Q ss_pred             cccccccccccccccc-cceec-----CCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           20 TIAACMTCPICNTLLR-DATTI-----SECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        20 ~Lee~LtCpIClelf~-dPvtL-----s~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+...-.|+||..++. --.++     .-|.|-|...|++.|+...+...||+||..+
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence            4667788999998875 11111     1399999999999999988889999999764

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.57  E-value=0.017  Score=64.72  Aligned_cols=45  Identities=33%  Similarity=0.710  Sum_probs=38.8

Q ss_pred             ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +.|+||.+ ...++.+ .|+|.||..|+...+.......||.|+..+
T Consensus       455 ~~c~ic~~-~~~~~it-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFIT-RCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc-cccceee-cccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            89999999 7777777 899999999999988876666899999764

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.35  E-value=0.036  Score=55.36  Aligned_cols=67  Identities=21%  Similarity=0.486  Sum_probs=51.5

Q ss_pred             ccccccccccc------ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc--CCCcCCCCCCCChHHHHHHHHH
Q 013553           24 CMTCPICNTLL------RDATTISECLHTFCRKCIYDKISDEEIECCPVCNID--LGCVPLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        24 ~LtCpIClelf------~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~--l~~~~~~~lr~n~~L~~Lv~kl   92 (441)
                      .+.|-||.+.|      ..|..+ .|||+||..|+...... ....||.||..  +.......+..|+.+..++..+
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            36789998876      367777 69999999999988875 44567999988  3334456778888888777776

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.20  E-value=0.023  Score=62.48  Aligned_cols=44  Identities=25%  Similarity=0.646  Sum_probs=34.8

Q ss_pred             ccccccccccccccc----ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCc
Q 013553           20 TIAACMTCPICNTLL----RDATTISECLHTFCRKCIYDKISDEEIECCPVCNI   69 (441)
Q Consensus        20 ~Lee~LtCpIClelf----~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~   69 (441)
                      .+.+.+.|+||+..|    +.|+.+ .|||+.|+.|+...+..    .|| |..
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn~----scp-~~~   54 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYNA----SCP-TKR   54 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhhc----cCC-CCc
Confidence            345568999997777    589999 79999999999887763    477 543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.87  E-value=0.049  Score=54.04  Aligned_cols=49  Identities=18%  Similarity=0.437  Sum_probs=39.2

Q ss_pred             ccccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           21 IAACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        21 Lee~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      -...+.|||+...|.   .-+.|.+|||+|+..+|...-   ....||+|...+.
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccc
Confidence            356799999999884   456677899999999998763   2356999999874

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=0.035  Score=57.33  Aligned_cols=47  Identities=26%  Similarity=0.653  Sum_probs=38.4

Q ss_pred             cccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +..-.|-||+.-.++-+.+ +|.|. .|..|.....-  ....||+||..+
T Consensus       288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi  335 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRY--QTNNCPICRQPI  335 (349)
T ss_pred             cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHH--hhcCCCccccch
Confidence            3367899999999999999 89997 69999866542  346799999875

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.69  E-value=0.024  Score=56.70  Aligned_cols=48  Identities=21%  Similarity=0.520  Sum_probs=39.1

Q ss_pred             ccccccccccccccc----------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDA----------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dP----------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ++-.|.||.+-+..-          .++ .|+|.|-..||..|..-+..-+||-|+..+
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekV  280 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKV  280 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHh
Confidence            357899998876533          467 699999999999998776678999998765

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.55  E-value=0.017  Score=46.47  Aligned_cols=48  Identities=23%  Similarity=0.543  Sum_probs=22.4

Q ss_pred             cccccccccccc-c---ceecC---CCCCcchHHHHHHhhccCC---------CCCCCCCCccC
Q 013553           24 CMTCPICNTLLR-D---ATTIS---ECLHTFCRKCIYDKISDEE---------IECCPVCNIDL   71 (441)
Q Consensus        24 ~LtCpIClelf~-d---PvtLs---~CgHtFC~~CI~~~l~~~~---------~~~CP~CR~~l   71 (441)
                      ++.|+||..++. .   |...-   .|++.|-..||..|+....         .-.||.|+..+
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i   65 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI   65 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence            578999998765 2   33221   4888899999999987421         13599999875

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.54  E-value=0.032  Score=57.64  Aligned_cols=45  Identities=24%  Similarity=0.606  Sum_probs=35.1

Q ss_pred             ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +....-|-||++-..+.+.+ +|||..|  |+.-...   ...||+||..+
T Consensus       302 ~~~p~lcVVcl~e~~~~~fv-pcGh~cc--ct~cs~~---l~~CPvCR~rI  346 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFV-PCGHVCC--CTLCSKH---LPQCPVCRQRI  346 (355)
T ss_pred             cCCCCceEEecCCccceeee-cCCcEEE--chHHHhh---CCCCchhHHHH
Confidence            44567899999999999999 8999988  7754433   24599999654

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=93.50  E-value=0.062  Score=54.25  Aligned_cols=45  Identities=33%  Similarity=0.725  Sum_probs=33.3

Q ss_pred             ccccccc-ccccce---ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           26 TCPICNT-LLRDAT---TISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        26 tCpICle-lf~dPv---tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .||+|.. .+.+|-   .+-+|+|+.|.+|+...+.. +.-.||.|...+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iL   50 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVIL   50 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchh
Confidence            4899964 333332   12279999999999988874 567899999875

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.48  E-value=0.035  Score=54.61  Aligned_cols=64  Identities=20%  Similarity=0.562  Sum_probs=40.8

Q ss_pred             cccccccccc-ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCch
Q 013553           25 MTCPICNTLL-RDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKR   97 (441)
Q Consensus        25 LtCpIClelf-~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~~   97 (441)
                      ..|-.|...- .+|..|+.|+|.||..|......    ..||.|+..+.     .+..+..|-.-+..||...+
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir-----~i~l~~slp~~ik~~F~d~~   68 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIR-----IIQLNRSLPTDIKSYFADPP   68 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCc----cccccccceee-----eeecccccchhHHHHccCcH
Confidence            4566665432 67788889999999999754332    27999998753     23334444445555554433

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.42  E-value=0.058  Score=53.46  Aligned_cols=47  Identities=21%  Similarity=0.424  Sum_probs=39.7

Q ss_pred             ccccccccccccccce---ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDAT---TISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dPv---tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .-+.||+|.+.|.+.+   .|.+|||.||..|....+..+  ..||+|...+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D--~v~pv~d~pl  269 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD--MVDPVTDKPL  269 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc--ccccCCCCcC
Confidence            5799999999998765   455899999999999999754  6799999875

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=0.036  Score=56.80  Aligned_cols=46  Identities=24%  Similarity=0.571  Sum_probs=39.1

Q ss_pred             ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553           23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID   70 (441)
Q Consensus        23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~   70 (441)
                      +.-.||||+.--.+|..+.--|..||..||..+..+.  .+||+-..+
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~--~~CPVT~~p  344 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNY--GHCPVTGYP  344 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhc--CCCCccCCc
Confidence            4578999999999999986569999999999999854  579987765

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.29  E-value=0.029  Score=56.69  Aligned_cols=40  Identities=35%  Similarity=0.752  Sum_probs=33.7

Q ss_pred             cccccccccccccceecCCCCC-cchHHHHHHhhccCCCCCCCCCCcc
Q 013553           24 CMTCPICNTLLRDATTISECLH-TFCRKCIYDKISDEEIECCPVCNID   70 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgH-tFC~~CI~~~l~~~~~~~CP~CR~~   70 (441)
                      ...|.||++..++-+.| +||| .-|..|-..      ...||+||..
T Consensus       300 ~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkr------m~eCPICRqy  340 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFL-ECGHMVTCTKCGKR------MNECPICRQY  340 (350)
T ss_pred             HHHHHHHhcCCcceEEe-ecCcEEeehhhccc------cccCchHHHH
Confidence            68899999999999999 8999 469999533      3479999965

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.97  E-value=0.048  Score=58.51  Aligned_cols=48  Identities=29%  Similarity=0.613  Sum_probs=35.6

Q ss_pred             cccccccccccccc-----------------cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLR-----------------DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~-----------------dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +...-|+||..-+.                 +-+.+ +|.|.|-..|+..|+.. -...||+||..+
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~t-PC~HifH~~CL~~WMd~-ykl~CPvCR~pL  633 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLT-PCHHIFHRQCLLQWMDT-YKLICPVCRCPL  633 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhcccccc-chHHHHHHHHHHHHHhh-hcccCCccCCCC
Confidence            44577999987541                 12233 89999999999999963 346899999775

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=92.93  E-value=0.1  Score=39.28  Aligned_cols=42  Identities=21%  Similarity=0.548  Sum_probs=33.4

Q ss_pred             ccccccc--ccccceecCCCC-----CcchHHHHHHhhccCCCCCCCCCC
Q 013553           26 TCPICNT--LLRDATTISECL-----HTFCRKCIYDKISDEEIECCPVCN   68 (441)
Q Consensus        26 tCpICle--lf~dPvtLs~Cg-----HtFC~~CI~~~l~~~~~~~CP~CR   68 (441)
                      .|-||++  .-.++... +|.     |.|-..|+..|+.......||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889987  34566666 785     779999999999877778999995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.59  E-value=0.067  Score=55.39  Aligned_cols=46  Identities=26%  Similarity=0.547  Sum_probs=38.6

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID   70 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~   70 (441)
                      .++-.||||.---..+|.. +|+|.-|..||.+++-+.  ..|-.|+..
T Consensus       420 sEd~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN~--k~CFfCktT  465 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMNC--KRCFFCKTT  465 (489)
T ss_pred             cccccCcceecccchhhcc-CCCCchHHHHHHHHHhcC--CeeeEecce
Confidence            3567899999999999999 899999999998887643  568888765

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.34  E-value=0.11  Score=54.62  Aligned_cols=49  Identities=22%  Similarity=0.497  Sum_probs=35.3

Q ss_pred             ccccccccccccccc--cceecCCCCCcchHHHHHHhhccC---C---CCCCCCCCc
Q 013553           21 IAACMTCPICNTLLR--DATTISECLHTFCRKCIYDKISDE---E---IECCPVCNI   69 (441)
Q Consensus        21 Lee~LtCpIClelf~--dPvtLs~CgHtFC~~CI~~~l~~~---~---~~~CP~CR~   69 (441)
                      ....+.|.||++-..  .-+...+|+|.||+.|+..++.-.   +   ...||.|..
T Consensus       181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            344689999998763  455555999999999998886532   2   267777653

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=91.71  E-value=0.072  Score=59.36  Aligned_cols=67  Identities=19%  Similarity=0.559  Sum_probs=49.3

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCC-CCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEE-IECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~-~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl   92 (441)
                      ...+.|+||...+..|+.+ .|-|.||..|+...+.... ...||+|+..+   .....+.-.....++..+
T Consensus        19 ~k~lEc~ic~~~~~~p~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~---eK~s~~Es~r~sq~vqe~   86 (684)
T KOG4362|consen   19 QKILECPICLEHVKEPSLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDI---EKRSLRESPRFSQLSKES   86 (684)
T ss_pred             hhhccCCceeEEeeccchh-hhhHHHHhhhhhceeeccCccccchhhhhhh---hhhhccccchHHHHHHHh
Confidence            3469999999999999888 7999999999977665433 57899999764   344444444444555544

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.62  E-value=0.16  Score=50.44  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=38.8

Q ss_pred             hhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhcc
Q 013553           14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD   58 (441)
Q Consensus        14 ~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~   58 (441)
                      ..+-++.|.++--|++|++-+++||.. +=||.||+.||.+++-.
T Consensus        33 ~RLgrDsiK~FdcCsLtLqPc~dPvit-~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   33 ERLGRDSIKPFDCCSLTLQPCRDPVIT-PDGYLFDREAILEYILA   76 (303)
T ss_pred             hhhcccccCCcceeeeecccccCCccC-CCCeeeeHHHHHHHHHH
Confidence            455678888899999999999999999 89999999999988753

>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E

Probab=90.61  E-value=0.065  Score=39.97  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=26.0

Q ss_pred             cccCccccCcccccceeccCCcccccccccccchHHHHHH
Q 013553          109 VTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKA  148 (441)
Q Consensus       109 vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~ra  148 (441)
                      ++||.   +||+++|+||.|.+++.++...+..+.+++|+
T Consensus         1 ltlDp---~TAh~~L~lS~d~k~v~~~~~~~~~p~~peRF   37 (49)
T PF13765_consen    1 LTLDP---NTAHPSLVLSEDGKSVRYSEQPQNYPDNPERF   37 (49)
T ss_dssp             -EB-T---TTS-TTEEEETTSSEEEE-SST-S--S-TTS-
T ss_pred             CEECc---ccCCCCeEECCCCeEEEEccCCccCCCCCCcc
Confidence            47888   99999999999999999999998888877775

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.36  E-value=0.14  Score=38.75  Aligned_cols=46  Identities=22%  Similarity=0.445  Sum_probs=25.1

Q ss_pred             cccccccccccccceecCCCCCcchHHHH--HHhhccCCCCCCCCCCc
Q 013553           24 CMTCPICNTLLRDATTISECLHTFCRKCI--YDKISDEEIECCPVCNI   69 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI--~~~l~~~~~~~CP~CR~   69 (441)
                      .|.|||....+..|+....|.|.-|.+=.  ...........||.|..
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~   49 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK   49 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence            37899999999999999899999775442  22222235588999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=90.28  E-value=0.3  Score=36.94  Aligned_cols=43  Identities=35%  Similarity=0.739  Sum_probs=20.4

Q ss_pred             ccccccccc--c-ceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553           27 CPICNTLLR--D-ATTISECLHTFCRKCIYDKISDEEIECCPVCNID   70 (441)
Q Consensus        27 CpIClelf~--d-PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~   70 (441)
                      ||+|.+-+.  + -+.--+||+-+|+.|......+ +...||.||..
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCC
Confidence            678877661  1 0111259999999998877753 45789999975

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=90.10  E-value=0.26  Score=50.30  Aligned_cols=62  Identities=19%  Similarity=0.494  Sum_probs=46.5

Q ss_pred             ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013553           21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      +.+-+.||||.+++..|+.--.=||.-|..|-....     ..||.|+..++     ++ ....++.+++..+
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g-----~~-R~~amEkV~e~~~  106 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS-----NKCPTCRLPIG-----NI-RCRAMEKVAEAVL  106 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhhhc-----ccCCccccccc-----cH-HHHHHHHHHHhce
Confidence            456799999999999998762238999999975433     56999997764     33 4666777777764

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=89.71  E-value=0.15  Score=39.54  Aligned_cols=45  Identities=22%  Similarity=0.634  Sum_probs=34.8

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .....|-.|...-...+.+ +|||..|..|....    .-.-||.|...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~----rYngCPfC~~~~   49 (55)
T PF14447_consen    5 QPEQPCVFCGFVGTKGTVL-PCGHLICDNCFPGE----RYNGCPFCGTPF   49 (55)
T ss_pred             ccceeEEEccccccccccc-cccceeeccccChh----hccCCCCCCCcc
Confidence            4456788888887888888 89999999997432    224699999875

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.59  E-value=0.21  Score=51.70  Aligned_cols=51  Identities=24%  Similarity=0.516  Sum_probs=39.8

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID   70 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~   70 (441)
                      +.=++...|-||-+-+.--..+ +|+|..|.-|-.+.-.......||.|+..
T Consensus        56 dtDEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          56 DTDEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             ccccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            3446789999999988776667 89999999998665433345789999976

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=88.31  E-value=0.42  Score=43.42  Aligned_cols=58  Identities=21%  Similarity=0.459  Sum_probs=44.0

Q ss_pred             hhhhhhhcccccccccccccccccceecCC---CCCcchHHHHHHhhccC-CCCCCCCCCccCC
Q 013553           13 VVKVKRETIAACMTCPICNTLLRDATTISE---CLHTFCRKCIYDKISDE-EIECCPVCNIDLG   72 (441)
Q Consensus        13 ~~~v~~e~Lee~LtCpIClelf~dPvtLs~---CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l~   72 (441)
                      +.+|-.+.  .-..|-||.+...+...+.+   ||...|..|-...|..- -...||+|+..+.
T Consensus        71 vmnvF~d~--~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   71 VMNVFLDP--KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             HheeecCC--CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            34444453  56899999998887777754   99999999997776643 3589999998864

>PHA03096 p28-like protein; Provisional

Probab=88.14  E-value=0.27  Score=49.81  Aligned_cols=45  Identities=24%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             cccccccccccc-ce------ecCCCCCcchHHHHHHhhccC-CCCCCCCCCc
Q 013553           25 MTCPICNTLLRD-AT------TISECLHTFCRKCIYDKISDE-EIECCPVCNI   69 (441)
Q Consensus        25 LtCpIClelf~d-Pv------tLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~   69 (441)
                      -.|.||++.... +.      +++.|-|.||..||..|.... ....||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            689999985532 11      345799999999999887653 2345666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=87.88  E-value=0.21  Score=52.44  Aligned_cols=48  Identities=19%  Similarity=0.598  Sum_probs=38.4

Q ss_pred             cccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCc
Q 013553           22 AACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNI   69 (441)
Q Consensus        22 ee~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~   69 (441)
                      +-.+.|-.|.+.+-   +-..-.+|.|.|-..|++.++.+.+.-.||.||.
T Consensus       363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            44699999998762   2233348999999999999998777789999994

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=87.76  E-value=0.47  Score=39.65  Aligned_cols=44  Identities=27%  Similarity=0.616  Sum_probs=31.7

Q ss_pred             ccccccccc----ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           26 TCPICNTLL----RDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        26 tCpIClelf----~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +|+-|..-.    .-|+..--|-|.|-..||.+|+...  ..||+|+...
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk--~~CPld~q~w   80 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK--GVCPLDRQTW   80 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC--CCCCCCCcee
Confidence            455554422    2455555699999999999999864  5799999764

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=86.44  E-value=0.18  Score=41.73  Aligned_cols=36  Identities=25%  Similarity=0.555  Sum_probs=27.8

Q ss_pred             cceecCCCCCcchHHHHHHhhccCC-CCCCCCCCccC
Q 013553           36 DATTISECLHTFCRKCIYDKISDEE-IECCPVCNIDL   71 (441)
Q Consensus        36 dPvtLs~CgHtFC~~CI~~~l~~~~-~~~CP~CR~~l   71 (441)
                      -|..+--|.|.|-..||.+|+.... .-.||+||...
T Consensus        44 CPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   44 CPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            3555545999999999999987542 36899999754

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.38  E-value=0.61  Score=49.06  Aligned_cols=48  Identities=15%  Similarity=0.432  Sum_probs=40.0

Q ss_pred             cccccccccccccc---ccceecCCCCCcchHHHHHHhhccCCC--CCCCCCCcc
Q 013553           21 IAACMTCPICNTLL---RDATTISECLHTFCRKCIYDKISDEEI--ECCPVCNID   70 (441)
Q Consensus        21 Lee~LtCpIClelf---~dPvtLs~CgHtFC~~CI~~~l~~~~~--~~CP~CR~~   70 (441)
                      ++.-|+|||=.+.-   .-|+.+ .|||..|+.-|.+...+ +.  +.||.|-..
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~n-g~~sfKCPYCP~e  383 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKN-GSQSFKCPYCPVE  383 (394)
T ss_pred             ccceeecccchhhccCCCCCeee-eccceecHHHHHHHhhC-CCeeeeCCCCCcc
Confidence            67789999987765   468888 79999999999888775 44  999999765

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.09  E-value=0.65  Score=47.06  Aligned_cols=70  Identities=24%  Similarity=0.433  Sum_probs=49.4

Q ss_pred             ccccccccccccccceecCCC----CCcchHHHHHHhhccCC---CCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013553           23 ACMTCPICNTLLRDATTISEC----LHTFCRKCIYDKISDEE---IECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL   95 (441)
Q Consensus        23 e~LtCpIClelf~dPvtLs~C----gHtFC~~CI~~~l~~~~---~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~   95 (441)
                      .-|.|-+|.+-|.|.... .|    .|-||+-|-...+..++   ...||.-..-   .-+..-.+...|+.-|..|+..
T Consensus       267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkC---PLvgS~vPWAFMQGEIatILag  342 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKC---PLVGSNVPWAFMQGEIATILAG  342 (352)
T ss_pred             CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhhcCCCceeCCCCCcC---cccCCcccHHHhhhhHHHHhcc
Confidence            348999999999998888 67    69999999998887652   3566654321   2233445667777777777654


Q ss_pred             c
Q 013553           96 K   96 (441)
Q Consensus        96 ~   96 (441)
                      .
T Consensus       343 d  343 (352)
T KOG3579|consen  343 D  343 (352)
T ss_pred             c
Confidence            3

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=84.82  E-value=0.54  Score=48.71  Aligned_cols=47  Identities=19%  Similarity=0.458  Sum_probs=30.7

Q ss_pred             ccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +++ ||+|.+-+.   .-..--+||...|+-|....-. .-.-.||.||...
T Consensus        14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq-~lngrcpacrr~y   63 (480)
T COG5175          14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQ-NLNGRCPACRRKY   63 (480)
T ss_pred             ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHh-hccCCChHhhhhc
Confidence            344 999988652   1111126999999999754332 2346799999765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.42  E-value=0.61  Score=53.16  Aligned_cols=45  Identities=22%  Similarity=0.523  Sum_probs=37.5

Q ss_pred             ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553           21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID   70 (441)
Q Consensus        21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~   70 (441)
                      +-+.-.|..|...+.-|+.-..|||.|-..|+.     .....||.|+..
T Consensus       837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~e  881 (933)
T KOG2114|consen  837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLPE  881 (933)
T ss_pred             eeeeeeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccchh
Confidence            344568999999999999888899999999987     244679999864

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=83.10  E-value=0.42  Score=39.99  Aligned_cols=33  Identities=24%  Similarity=0.543  Sum_probs=27.0

Q ss_pred             ccccccccccccccc-cceecCCCCCcchHHHHH
Q 013553           21 IAACMTCPICNTLLR-DATTISECLHTFCRKCIY   53 (441)
Q Consensus        21 Lee~LtCpIClelf~-dPvtLs~CgHtFC~~CI~   53 (441)
                      |.+.-.|++|...|. .++...+|||.|...|+.
T Consensus        75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            566788999988765 666777999999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=82.87  E-value=0.54  Score=48.17  Aligned_cols=42  Identities=26%  Similarity=0.690  Sum_probs=28.4

Q ss_pred             ccccccccccc-ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553           24 CMTCPICNTLL-RDATTISECLHTFCRKCIYDKISDEEIECCPVCNID   70 (441)
Q Consensus        24 ~LtCpIClelf-~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~   70 (441)
                      --.|--|..-+ .--..| +|.|.||.+|...    +..+.||.|...
T Consensus        90 VHfCd~Cd~PI~IYGRmI-PCkHvFCl~CAr~----~~dK~Cp~C~d~  132 (389)
T KOG2932|consen   90 VHFCDRCDFPIAIYGRMI-PCKHVFCLECARS----DSDKICPLCDDR  132 (389)
T ss_pred             eEeecccCCcceeeeccc-ccchhhhhhhhhc----CccccCcCcccH
Confidence            34567775533 333445 8999999999753    235789999754

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=82.74  E-value=0.3  Score=48.40  Aligned_cols=47  Identities=28%  Similarity=0.659  Sum_probs=33.7

Q ss_pred             ccccccccc-ccccc-ee---cCCCCCcchHHHHHHhhccCCCCCCC--CCCccC
Q 013553           24 CMTCPICNT-LLRDA-TT---ISECLHTFCRKCIYDKISDEEIECCP--VCNIDL   71 (441)
Q Consensus        24 ~LtCpICle-lf~dP-vt---Ls~CgHtFC~~CI~~~l~~~~~~~CP--~CR~~l   71 (441)
                      +-.||||.. .+-+| +.   -.+|-|..|.+|+.+.+.. +.-.||  -|...|
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kIL   63 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKIL   63 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHH
Confidence            468999965 22223 11   1159999999999999885 667899  887654

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=80.32  E-value=0.48  Score=48.32  Aligned_cols=51  Identities=22%  Similarity=0.443  Sum_probs=38.1

Q ss_pred             cccccccccccccc-cc-eecCCCCCcchHHHHHHhhccC---------------------CCCCCCCCCccCC
Q 013553           22 AACMTCPICNTLLR-DA-TTISECLHTFCRKCIYDKISDE---------------------EIECCPVCNIDLG   72 (441)
Q Consensus        22 ee~LtCpIClelf~-dP-vtLs~CgHtFC~~CI~~~l~~~---------------------~~~~CP~CR~~l~   72 (441)
                      .....|.||+--|. .| ++...|-|-|-..|+.+++..-                     ..-.||+||..++
T Consensus       113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            45789999998774 33 6666899999999997776541                     1256999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	441
2h0d_A	97	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		7e-10
3rpg_B	117	Bmi1RING1B-Ubch5c Complex Structure Length = 117		9e-10
2ckl_A	108	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		1e-09
2ckl_B	165	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		1e-07
3rpg_C	121	Bmi1RING1B-Ubch5c Complex Structure Length = 121		2e-07
2djb_A	72	Solution Structure Of The Ring Domain Of The Human		6e-06
2h0d_B	100	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		7e-06

>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 97

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL-GC 73
          ++K   +   + C +C     DATTI ECLH+FC+ CI   +  E  + CP+C++ +   
Sbjct: 2  RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 59
Query: 74 VPLEKLRPDHTLQDVRAKIFP------LKRRK 99
           PL  +R D TLQD+  K+ P      +KRR+
Sbjct: 60 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 91

>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure Length = 117

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL-GC 73
          ++K   +   + C +C     DATTI ECLH+FC+ CI   +  E  + CP+C++ +   
Sbjct: 6  RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 74 VPLEKLRPDHTLQDVRAKIFP------LKRRK 99
           PL  +R D TLQD+  K+ P      +KRR+
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95

>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL-GC 73
          ++K   +   + C +C     DATTI ECLH+FC+ CI   +  E  + CP+C++ +   
Sbjct: 6  RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 74 VPLEKLRPDHTLQDVRAKIFP------LKRRK 99
           PL  +R D TLQD+  K+ P      +KRR+
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95

>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 165

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 2   RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
           R  +E  ++ L + V   ++ + + CPIC  +L++  T  ECLH FC  CI   +     
Sbjct: 32  RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 91
Query: 62  ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94
           E CP C   L  V    LRPD     + +KI+P
Sbjct: 92  E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP 121

>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure Length = 121

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 2   RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
           R  +E  ++ L + V   ++ + + CPIC  +L++  T  ECLH FC  CI   +     
Sbjct: 31  RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 90
Query: 62  ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94
           E CP C   L  V    LRPD     + +KI+P
Sbjct: 91  E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP 120

>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human Polycomb Group Ring Finger Protein 6 Length = 72

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
          C IC   L DATTI+ECLHTFC+ CI           CP CNI
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNR--CPKCNI 58

>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 100

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 2   RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
           R  +E  ++ L + V   ++ + + CPIC  +L++  T  ECLH FC  CI   +     
Sbjct: 12  RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 71
Query: 62  ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF 93
           E CP C   L  V    LRPD     + +KI+
Sbjct: 72  E-CPTCRKKL--VSKRSLRPDPNFDALISKIY 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	441
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-27
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-26
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-16
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-14
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-13
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-13
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-12
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-11
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	2e-10
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-10
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-10
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	3e-10
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	4e-10
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	5e-10
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	8e-10
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	8e-10
1z6u_A	150	NP95-like ring finger protein isoform B; structura	9e-10
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-09
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-09
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-09
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	2e-08
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	2e-08
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	7e-08
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	2e-07
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	2e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	4e-07
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	3e-06
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-06
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	3e-06
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-06
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	5e-06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-05
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	3e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	4e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	4e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	6e-04

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score =  106 bits (265), Expect = 2e-27
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 2   RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
           R  +E  ++ L + V   ++ + + CPIC  +L++  T  ECLH FC  CI   +     
Sbjct: 32  RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 91

Query: 62  ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
           E CP C      V    LRPD     + +KI+P +       E V +  +     +++LS
Sbjct: 92  E-CPTCRKK--LVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLA-RINKHNNQQALS 147

Query: 122 SLVVSAPRVSAQTTMTR 138
             +    ++ A   + R
Sbjct: 148 HSIEEGLKIQAMNRLQR 164

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score =  101 bits (253), Expect = 2e-26
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 13  VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
             ++K   +   + C +C     DATTI ECLH+FC+ CI   +  E  + CP+C++ + 
Sbjct: 4   TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61

Query: 73  -CVPLEKLRPDHTLQDVRAKIFPLKRRKVKA 102
              PL  +R D TLQD+  K+ P   +    
Sbjct: 62  KTRPLLNIRSDKTLQDIVYKLVPGLFKNEMK 92

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV 74
                +   + C IC   L DATTI+ECLHTFC+ CI           CP CNI     
Sbjct: 6  SGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS--NRCPKCNI----- 58

Query: 75 PLEKLRP 81
           + + +P
Sbjct: 59 VVHQTQP 65

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 67.5 bits (165), Expect = 3e-14
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEK 78
          +TI   + C IC      A  I +C H +C  CI   +S +    CP C +    V    
Sbjct: 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCVT---VTEPD 71

Query: 79 LRPDHTLQDV 88
          L+ +  L ++
Sbjct: 72 LKNNRILDEL 81

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHT 84
          + C IC  ++ DA  I  C +++C +CI   + + +   CP C+ +   V  + L  +  
Sbjct: 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND--VSPDALIANKF 71

Query: 85 LQDV 88
          L+  
Sbjct: 72 LRQA 75

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDH 83
          + C IC  ++ DA  I  C +++C +CI   + + +   CP C+ +   V  + L    
Sbjct: 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND--VSPDALSGPS 72

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 19  ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEK 78
           E+IA    C IC   LRDA     C    C  CI   ++++    CP C      + L +
Sbjct: 17  ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAP---LQLRE 72

Query: 79  LRPDHTLQDVRAKIFPLKRRKVKAPE 104
           L      ++V  ++  L+   +   E
Sbjct: 73  LVNCRWAEEVTQQLDTLQLCSLTKHE 98

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 60.7 bits (147), Expect = 1e-11
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEK 78
          + +   + C  C  +LR+   +  C H FC  C+ D I       CPVC        ++ 
Sbjct: 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG----CPVCYT---PAWIQD 69

Query: 79 LRPDHTLQDV 88
          L+ +  L  +
Sbjct: 70 LKINRQLDSM 79

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 7  MASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIEC-CP 65
          MAS   V K++ E     + CPIC  +L+   TI  C H FC KCI            CP
Sbjct: 8  MASGQFVNKLQEE-----VICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCP 61

Query: 66 VC 67
          +C
Sbjct: 62 LC 63

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 5  REMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYD----KISDEE 60
            MAS+ ++  +K E     +TCPIC  LL++  +   C H+FCR CI        + + 
Sbjct: 6  SGMASS-VLEMIKEE-----VTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDG 58

Query: 61 IECCPVCNIDLGCVPLEKLRPDHTL 85
             CPVC +     P   L+P+  +
Sbjct: 59 KGNCPVCRV---PYPFGNLKPNLHV 80

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 1  MRVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEE 60
          +   R     N++  +++      + CPIC  L+++  +   C H FC+ C+   ++ ++
Sbjct: 3  LSALRVEEVQNVINAMQKI-----LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKK 56

Query: 61 IEC-CPVCNIDLGCVPLEKLRPDHTLQDV 88
              CP+C      +    L+       +
Sbjct: 57 GPSQCPLCKN---DITKRSLQESTRFSQL 82

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 7  MASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIEC-CP 65
          MAS   V K++ E     + CPIC  +L+   TI  C H FC KCI            CP
Sbjct: 8  MASGQFVNKLQEE-----VICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCP 61

Query: 66 VC 67
          +C
Sbjct: 62 LC 63

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 14/83 (16%)

Query: 7  MASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIY----DKISDEEIE 62
          MAS  ++V VK E     +TCPIC  LL    ++  C H+FC+ C+       + D+   
Sbjct: 8  MASG-ILVNVKEE-----VTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGES 60

Query: 63 CCPVCNIDLGCVPLEKLRPDHTL 85
           CPVC I       E +RP+  +
Sbjct: 61 SCPVCRI---SYQPENIRPNRHV 80

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 7  MASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIEC-CP 65
            S+  +  ++ E      +C +C   L++   I  C H FC+ CI     D E +  CP
Sbjct: 3  SGSSGALENLQVE-----ASCSVCLEYLKEPVIIE-CGHNFCKACITRWWEDLERDFPCP 56

Query: 66 VC 67
          VC
Sbjct: 57 VC 58

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 55.4 bits (133), Expect = 8e-10
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 25  MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHT 84
             C  C  L+    T   C H  C+ C+ D+    ++  CP C  DLG      ++ +  
Sbjct: 53  FQCICCQELVFRPITT-VCQHNVCKDCL-DRSFRAQVFSCPACRYDLGRSY--AMQVNQP 108

Query: 85  LQDVRAKIFP 94
           LQ V  ++FP
Sbjct: 109 LQTVLNQLFP 118

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYD-----KISDEEIECCPVCNIDLGCVPLEKLR 80
          TCPIC  LL +  ++  C H+ CR CI         S      CPVC I       E L+
Sbjct: 14 TCPICLELLTEPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGI---SYSFEHLQ 69

Query: 81 PDHTLQDV 88
           +  L ++
Sbjct: 70 ANQHLANI 77

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 56.2 bits (135), Expect = 9e-10
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 26  TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL 85
            C  C  L+    T  EC H  C+ C+  +    ++  CP C  DLG      + P+  L
Sbjct: 80  MCVCCQELVYQPVTT-ECFHNVCKDCL-QRSFKAQVFSCPACRHDLG--QNYIMIPNEIL 135

Query: 86  QDVRAKIFP 94
           Q +    FP
Sbjct: 136 QTLLDLFFP 144

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          +T+     C  C+ +L       EC H FC  C+   +S      C  C   +
Sbjct: 10 KTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSS-PKCTACQESI 60

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 26  TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRP---- 81
            C IC  +L +  T+  C HT C+ C      ++   CCP C   +        R     
Sbjct: 17  QCGICMEILVEPVTLP-CNHTLCKPCF-QSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74

Query: 82  DHTLQDVRAKIFPL---KRRKVKAPEAVPSVTLPVRRKER 118
           +  L  +  K +P     R   +  E V     PVR   +
Sbjct: 75  NVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSK 114

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL 85
           CPIC   LR+A     C H FC+ CI  K   +    CPV N  L      +L PD+  
Sbjct: 20 ECPICLMALREAVQTP-CGHRFCKACI-IKSIRDAGHKCPVDNEIL---LENQLFPDNFA 74

Query: 86 Q 86
          +
Sbjct: 75 K 75

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 26  TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL 85
            C  C  +LR     ++C H +C  C+   I     + C  C  +        +    + 
Sbjct: 33  LCSACRNVLRRPFQ-AQCGHRYCSFCL-ASILSSGPQNCAACVHEGIYEEGISILESSSA 90

Query: 86  QDVRAKIFPLKRRKVKAP 103
               A    ++      P
Sbjct: 91  FPDNAARREVESLPAVCP 108

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 26  TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL 85
           +C IC  +L D      C H FCR CI  +        CP C             P    
Sbjct: 25  SCQICEHILADPVET-SCKHLFCRICI-LRCLKVMGSYCPSCR--------YPCFPTDLE 74

Query: 86  QDVRAKIFPLKRRKVKAP 103
             V++ +  L    VK P
Sbjct: 75  SPVKSFLNILNSLMVKCP 92

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 51.2 bits (122), Expect = 7e-08
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL 85
           CPIC   LR+A     C H FC+ CI  K   +    CPV N     +   +L PD+  
Sbjct: 20 ECPICLMALREAVQTP-CGHRFCKACI-IKSIRDAGHKCPVDNE---ILLENQLFPDNFA 74

Query: 86 Q 86
          +
Sbjct: 75 K 75

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 25  MTCPICNTLLRDATTISECLHTFCRKCIYDKISD----EEIECCPVCNIDLGCVPLEKLR 80
            TCPI    ++       C HT+    I   I      ++   CP        +    L 
Sbjct: 8   FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67

Query: 81  PDHTLQDVRAKIFPLKRRKVKAPEAVPS 108
            D  L   R  I    +++ +  E+ PS
Sbjct: 68  QDEAL---RRAIENHNKKRHRHSESGPS 92

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67
          + C  C    +    +  CLHT C  C+     +     CP+C
Sbjct: 7  LRCQQCQAEAKCPKLLP-CLHTLCSGCL-----EASGMQCPIC 43

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 25  MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHT 84
           + C IC+    +A T++ C H+FC  CI +    +    CP+C  D+       L  D+ 
Sbjct: 65  LQCIICSEYFIEAVTLN-CAHSFCSYCINE--WMKRKIECPICRKDIKSKTYS-LVLDNC 120

Query: 85  LQDVRAKIFPLKRRK 99
           +  +   +    + +
Sbjct: 121 INKMVNNLSSEVKER 135

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 49.2 bits (116), Expect = 8e-07
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 25  MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC---VPLEKLRP 81
           +TCPI            +C H F R  I + +       CP       C   V +     
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQA----ACSQVVSMRDFVR 237

Query: 82  DHTLQDVRAKIFPLKRRKVKAPEA 105
           D  ++  R KI  +K  + +   +
Sbjct: 238 DPIMEL-RCKIAKMKESQEQDKRS 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 48/404 (11%), Positives = 105/404 (25%), Gaps = 116/404 (28%)

Query: 82  DHTLQDVRAKIFPLKRRKVKAP---EAVPSVTLPVRRKERSLSSLVVSAPRVSAQ----T 134
            +  +D    I  +           + V  +   +  KE  +  +++S   VS       
Sbjct: 15  QYQYKD----ILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFW 69

Query: 135 TMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKPMQS 194
           T+  ++     +         L  +          E  +    S  T   + Q    + +
Sbjct: 70  TLLSKQEEMVQK----FVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQ-RDRLYN 121

Query: 195 SSSAQPSQPISSKEKDNDAEQC-----------------EGKSDLWKPLNFLVEVASRTR 237
            +       +S  +      Q                   GK+  W     +      + 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--W-----VALDVCLSY 174

Query: 238 SLKSN--------SLGSEAKAEPTTITDNEAQVHKTKNKEDKCKSKSGNKNNNPDPTTSE 289
            ++          +L +    E       +       N   +    S    N      S 
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS----NIKLRIHSI 230

Query: 290 TINPKRLRRIRRKTAAAFGDSNISPQA--VLDAAGAKYERRNGPIW--FS-----LVASE 340
               +RL + +                  VL         +N   W  F+     L+ + 
Sbjct: 231 QAELRRLLKSKPY-----------ENCLLVLL------NVQNAKAWNAFNLSCKILLTTR 273

Query: 341 DQRGSLPLPQISSSYLRIKDRNIP------VSFIQKYLMMKL-DLPSESEVEIKCMGQPV 393
            ++ +  L   +++++ +   ++        S + KYL  +  DLP E          P 
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-----LTTNP- 327

Query: 394 IPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMVLTYARKV 437
               +L                  ++I  S +D +      + V
Sbjct: 328 ---RRL------------------SIIAESIRDGLATWDNWKHV 350

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 25 MTCPICNTLLRDAT------TISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          ++CPIC     +          +EC H FC +C+ D +  +    CP C   +
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKI 61

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 22 AACMTCPICNTLLRDAT------TISECLHTFCRKCIYDKISDEEIECCPVCN 68
           A ++CPIC     +          +EC H FC +C+ D +  +    CP C 
Sbjct: 1  GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCR 51

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEK 78
            C IC        ++  C H FC  C+         + C +C  ++    L+ 
Sbjct: 16 PECAICLQTCVHPVSLP-CKHVFCYLCVKGASWLG--KRCALCRQEIPEDFLDS 66

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
           C IC    ++   +++C H FC  C  +         C +C+
Sbjct: 17 RCFICRQAFQNPV-VTKCRHYFCESCALEHFRAT--PRCYICD 56

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYD--KISDEEIECCPVC 67
           CPIC     + +    CLH FC  CI    + +      CP+C
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT----CPLC 46

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 15/43 (34%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
           C IC++LL    +   C       C+           CP CN
Sbjct: 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 59

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 25 MTCPIC------NTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          ++CPIC                +EC H FC +C+ D +  +    CP C   +
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKI 66

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 19  ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
           E  +    C IC    +D   I  C H  C  C+     + E + CP C 
Sbjct: 327 EMGSTFQLCKICAENDKDVK-IEPCGHLMCTSCLT-SWQESEGQGCPFCR 374

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 25 MTCPICNTLLRDAT------TISECLHTFCRKCIYDKISDEEIECCPVCN 68
          ++CPIC     +          +EC H FC +C+ D  S +    CP C 
Sbjct: 8  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNANTCPTCR 55

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 13/60 (21%), Positives = 19/60 (31%)

Query: 23  ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPD 82
           A   C IC++LL    +   C       C+           CP CN        +   P+
Sbjct: 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVFDPE 238

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 25 MTCPIC--NTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI---DLGCVPLEKL 79
            C +C     +   TTI++C   FC  C+   +    I+      I   D  C     L
Sbjct: 6  SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE-LLIKEGLETAISCPDAACPKQGHL 64

Query: 80 RPD 82
          + +
Sbjct: 65 QEN 67

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 26 TCPICNTLLRDATT---ISECLHTFCRKCIYDKISDEEIEC--CPVC 67
           CPIC     +      +  C HT CR+C+ +K+    I    CP C
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCL-EKLLASSINGVRCPFC 62

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 26 TCPICNTLLRDATT----ISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
           CP C T      +    ++ C HT C  C+ D +       CP C   L
Sbjct: 5  GCPRCKTTKYRNPSLKLMVNVCGHTLCESCV-DLLFVRGAGNCPECGTPL 53

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 25 MTCPICNTLLRDATTI---SECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRP 81
          + CP+C   L           C +  CR C + +I  +E   CP C       P      
Sbjct: 12 VECPLCMEPLEIDDINFFPCTCGYQICRFC-WHRIRTDENGLCPACRKPYPEDPAVYKPL 70

Query: 82 DH 83
            
Sbjct: 71 SQ 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.52
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.5
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.45
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.41
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.41
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.4
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.39
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.39
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.37
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.37
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.35
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.35
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.32
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.31
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.29
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.29
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.28
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.26
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.25
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.24
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.24
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.22
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.19
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.19
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.18
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.16
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.15
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.13
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.13
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.09
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.08
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.02
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.0
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.98
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.97
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.96
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.86
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.86
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.85
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.83
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.83
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.8
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.8
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.79
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.78
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.77
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.76
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.75
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.73
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.72
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.7
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.67
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.6
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.55
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.49
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.42
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.4
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.37
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.35
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.3
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.14
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.08
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.01
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.97
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.87
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.53
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.13
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.23
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.14
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	96.11
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.04
3nw0_A	238	Non-structural maintenance of chromosomes element	94.54
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	91.68
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	91.68
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	80.18

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.52  E-value=8.3e-15  Score=119.69  Aligned_cols=74  Identities=23%  Similarity=0.572  Sum_probs=64.3

Q ss_pred             hhcccccccccccccccccceecCC-CCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013553           18 RETIAACMTCPICNTLLRDATTISE-CLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP   94 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~-CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p   94 (441)
                      .+.+.+.+.|+||+++|.+|+++ + |||+||..||..|+...+...||.||..+  .....+.+|..|.++++.+..
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~--~~~~~~~~n~~l~~~i~~~~~   81 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND--VSPDALIANKFLRQAVNNFKN   81 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS--CCTTSCEECHHHHHHHHHHHH
T ss_pred             cccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC--CCccccCcCHHHHHHHHHHHH
Confidence            45678889999999999999999 7 99999999999998765568999999886  345678999999999999954

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.50  E-value=1.9e-14  Score=124.18  Aligned_cols=76  Identities=25%  Similarity=0.583  Sum_probs=65.6

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCch
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKR   97 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~~   97 (441)
                      .+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||.||..+.  ....+++|..|.++++.++|...
T Consensus        46 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~~~~n~~l~~~i~~~~p~~~  121 (124)
T 3fl2_A           46 LSKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRA-QVFSCPACRYDLG--RSYAMQVNQPLQTVLNQLFPGYG  121 (124)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCCCHHHHHHHHHHSTTTT
T ss_pred             HHhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhH-CcCCCCCCCccCC--CCCCCCCCHHHHHHHHHHccccc
Confidence            34567789999999999999999 89999999999999973 4568999999873  33578999999999999998754

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.45  E-value=3.7e-14  Score=112.46  Aligned_cols=71  Identities=21%  Similarity=0.344  Sum_probs=61.5

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP   94 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p   94 (441)
                      +.+.+.+.|+||+++|.+|+++ +|||+||+.||..|+.. +...||.|+..+   ....+.+|..|+++++.|..
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~---~~~~l~~n~~l~~~i~~~~~   73 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA-GHKTCPKSQETL---LHAGLTPNYVLKSLIALWCE   73 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT-TCCBCTTTCCBC---SSCCCEECTTTHHHHHHHHH
T ss_pred             cCCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHH-CcCCCCCCcCCC---ChhhCccCHHHHHHHHHHHH
Confidence            3467789999999999999999 79999999999999974 467899999986   34578899999999998853

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.41  E-value=9.8e-14  Score=116.97  Aligned_cols=81  Identities=36%  Similarity=0.766  Sum_probs=67.8

Q ss_pred             hhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCC-cCCCCCCCChHHHHHHHHHc
Q 013553           15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC-VPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        15 ~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~-~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      .+..+.+.+.+.|+||+++|.+|+++.+|||+||..||..|+...  ..||.|+..+.. .+...+..|..|.++++.++
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~   83 (108)
T 2ckl_A            6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS--KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV   83 (108)
T ss_dssp             CEEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred             ccchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC--CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence            456677888999999999999999986899999999999999753  789999998742 12236789999999999998


Q ss_pred             CCch
Q 013553           94 PLKR   97 (441)
Q Consensus        94 p~~~   97 (441)
                      +...
T Consensus        84 ~~~~   87 (108)
T 2ckl_A           84 PGLF   87 (108)
T ss_dssp             TTHH
T ss_pred             hhHH
Confidence            8554

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.41  E-value=9.4e-14  Score=117.09  Aligned_cols=73  Identities=16%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      ...+.+.|.||||+++|.+||++ +|||+||+.||..|+..  ...||.|+..+   ....+.+|..|+++++.|...+
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~~   95 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLN--SPTDPFNRQTL---TESMLEPVPELKEQIQAWMREK   95 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTS--CSBCSSSCCBC---CTTSSEECHHHHHHHHHHHHTT
T ss_pred             hccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHc--CCCCCCCCCCC---ChhhceECHHHHHHHHHHHHHh
Confidence            34567789999999999999999 79999999999999973  57899999986   3568999999999999996544

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.40  E-value=4.1e-13  Score=120.63  Aligned_cols=75  Identities=27%  Similarity=0.633  Sum_probs=64.4

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      .+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||+||..+.  ....+.+|..|+++++.|++..
T Consensus        72 ~~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~n~~l~~lv~~~~p~~  146 (150)
T 1z6u_A           72 LKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKA-QVFSCPACRHDLG--QNYIMIPNEILQTLLDLFFPGY  146 (150)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCBCHHHHHHHHHHSTTT
T ss_pred             HHhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHh-CCCcCCCCCccCC--CCCCCCCCHHHHHHHHHHhhHh
Confidence            34567789999999999999999 89999999999999974 4568999999873  2337899999999999998754

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.39  E-value=1.6e-13  Score=112.01  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL   95 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~   95 (441)
                      ..+.+.|.||||+++|.+||++ +|||+||+.||..|+..  ...||.|+..+   ....+.+|..|+++++.|...
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~l~pn~~L~~~i~~~~~~   79 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLN--SPTDPFNRQML---TESMLEPVPELKEQIQAWMRE   79 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC---CGGGCEECHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhc--CCCCCCCcCCC---ChHhcchHHHHHHHHHHHHHH
Confidence            4466789999999999999999 79999999999999974  47899999986   345799999999999998543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.39  E-value=2.4e-13  Score=114.22  Aligned_cols=71  Identities=18%  Similarity=0.249  Sum_probs=62.2

Q ss_pred             hcccccccccccccccccceecCCCC-CcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013553           19 ETIAACMTCPICNTLLRDATTISECL-HTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL   95 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~Cg-HtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~   95 (441)
                      ..+.++|.||||+++|.+||++ +|| |+||+.||..|+..  ...||.|+..+   ....+.+|..|+++++.|...
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~   88 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLS--DQTDPFNRSPL---TMDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTT--SCBCTTTCSBC---CTTTSEECHHHHHHHHHHHHH
T ss_pred             hcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHh--CCCCCCCCCCC---ChhhceEcHHHHHHHHHHHHH
Confidence            4467789999999999999999 799 99999999999974  46899999986   356899999999999999543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.37  E-value=1.1e-13  Score=124.91  Aligned_cols=81  Identities=32%  Similarity=0.735  Sum_probs=63.2

Q ss_pred             hhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013553           15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP   94 (441)
Q Consensus        15 ~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p   94 (441)
                      .+..+.+.+.+.|+||+++|.+|+++.+|||+||..||..|+.. +...||+||..+.  ....+.+|..|.+++..+++
T Consensus        45 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           45 VVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLV--SKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             C----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCC--SGGGEEECHHHHHHHHHHC-
T ss_pred             ccchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCC--CcccCCcCHHHHHHHHHHHc
Confidence            34556677889999999999999998789999999999999974 4578999999873  44568899999999999988


Q ss_pred             Cchh
Q 013553           95 LKRR   98 (441)
Q Consensus        95 ~~~~   98 (441)
                      ....
T Consensus       122 ~~~~  125 (165)
T 2ckl_B          122 SRDE  125 (165)
T ss_dssp             ----
T ss_pred             chhH
Confidence            6543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=2.3e-13  Score=112.85  Aligned_cols=74  Identities=20%  Similarity=0.364  Sum_probs=61.4

Q ss_pred             ccccccccccccccccceecCCCCCcchHHHHHHhhccC----CCCCCCC--CCcc-CCCcCCCCCCCChHHHHHHHHHc
Q 013553           21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE----EIECCPV--CNID-LGCVPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~----~~~~CP~--CR~~-l~~~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      ..+.|.||||+++|.+||++..|||+||+.||..|+...    ....||+  |+.. +   ....|.+|..|.+++..+.
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l---~~~~L~pn~~L~~~I~~~~   80 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDI---RKSDLIQDEALRRAIENHN   80 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCB---CGGGEEECHHHHHHHHHHH
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccccc---CHhhCcCCHHHHHHHHHHH
Confidence            356799999999999999993499999999999999753    2478999  9865 4   3467899999999999996


Q ss_pred             CCch
Q 013553           94 PLKR   97 (441)
Q Consensus        94 p~~~   97 (441)
                      ....
T Consensus        81 ~~~~   84 (94)
T 2yu4_A           81 KKRH   84 (94)
T ss_dssp             TTCC
T ss_pred             HHhc
Confidence            5544

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.35  E-value=2.6e-13  Score=113.42  Aligned_cols=75  Identities=28%  Similarity=0.503  Sum_probs=61.8

Q ss_pred             hhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553           14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        14 ~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl   92 (441)
                      .....+.|.+.+.|+||+++|.+|+++..|||+||..||..|+... ...||.||..+   ....+..+..+.++++.+
T Consensus        12 ~~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~---~~~~l~~~~~~~~i~~~~   86 (100)
T 3lrq_A           12 DEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPL---QLRELVNCRWAEEVTQQL   86 (100)
T ss_dssp             HHHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBC---CGGGCEECTTHHHHHHHH
T ss_pred             cccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcC---CHHHhHhhHHHHHHHHHH
Confidence            3446677888999999999999999933899999999999999753 36899999986   345677788888887776

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.35  E-value=5.2e-13  Score=110.69  Aligned_cols=75  Identities=24%  Similarity=0.507  Sum_probs=63.5

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      ..+.+.+.+.|+||++.|.+|+++.+|||+||..||..|+..  ...||.||..+.   ...+.+|..|.++++.+....
T Consensus        15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~---~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVT---EPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCC---GGGCEECHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCC---hhhCCcCHHHHHHHHHHHHHH
Confidence            455677889999999999999988679999999999999974  478999999863   356889999999999985443

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.32  E-value=5.6e-13  Score=114.11  Aligned_cols=72  Identities=24%  Similarity=0.588  Sum_probs=62.4

Q ss_pred             hhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013553           16 VKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP   94 (441)
Q Consensus        16 v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p   94 (441)
                      ...+.|.+.+.|+||+++|.+|+++.+|||+||..||..|+.    ..||+|+..+   ....+.+|..|.+++..+..
T Consensus        14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~---~~~~~~~n~~l~~l~~~~~~   85 (117)
T 1jm7_B           14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPA---WIQDLKINRQLDSMIQLCSK   85 (117)
T ss_dssp             HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBC---SCSSCCCCHHHHHHHHHHHH
T ss_pred             HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcC---ccccccccHHHHHHHHHHHH
Confidence            355667889999999999999999866999999999999986    5799999986   45678999999999998843

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.31  E-value=2.2e-13  Score=115.84  Aligned_cols=76  Identities=22%  Similarity=0.521  Sum_probs=63.4

Q ss_pred             cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCC----cCCCCCCCChHHHHHHHHHcCC
Q 013553           20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC----VPLEKLRPDHTLQDVRAKIFPL   95 (441)
Q Consensus        20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~----~~~~~lr~n~~L~~Lv~kl~p~   95 (441)
                      .+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. +...||.||..+..    .....+..|..|.+++.++++.
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~   88 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR   88 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred             CCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence            455679999999999999999 89999999999999864 45789999998641    1235677899999999999976


Q ss_pred             ch
Q 013553           96 KR   97 (441)
Q Consensus        96 ~~   97 (441)
                      ..
T Consensus        89 ~~   90 (115)
T 3l11_A           89 EC   90 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.29  E-value=1.1e-13  Score=109.37  Aligned_cols=66  Identities=32%  Similarity=0.770  Sum_probs=53.0

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccC-----CCCCCCCCCccCCCcCCCCCCCChHHHH
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE-----EIECCPVCNIDLGCVPLEKLRPDHTLQD   87 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~-----~~~~CP~CR~~l~~~~~~~lr~n~~L~~   87 (441)
                      .+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+...     ....||.||..+.   ...+++|..|++
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~---~~~l~~n~~l~~   76 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS---FEHLQANQHLAN   76 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC---SSGGGTCSSSCC
T ss_pred             HhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC---HhhCCcCHHHHH
Confidence            34577889999999999999999 899999999999998752     2579999998863   345666665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.29  E-value=1e-12  Score=125.62  Aligned_cols=72  Identities=21%  Similarity=0.240  Sum_probs=61.3

Q ss_pred             cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      .+...+.||||+++|.+||++ +|||+||+.||..|+... ...||+|+..+   ....+.+|..|.++++.|...+
T Consensus       204 ~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~---~~~~l~~n~~l~~~i~~~~~~~  275 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRV-GHFNPVTRSPL---TQEQLIPNLAMKEVIDAFISEN  275 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHT-CSSCTTTCCCC---CGGGCEECHHHHHHHHHHHTTC
T ss_pred             CCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHC-CCCCcCCCCCC---chhcCcccHHHHHHHHHHHHHC
Confidence            345789999999999999999 799999999999999753 34599999986   3457899999999999996543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.28  E-value=1.7e-12  Score=102.59  Aligned_cols=54  Identities=26%  Similarity=0.740  Sum_probs=47.7

Q ss_pred             hhhcccccccccccccccccceecCC-CCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           17 KRETIAACMTCPICNTLLRDATTISE-CLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~-CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ..+.+.+.+.|+||+++|.+|+++ + |||+||..||..|+...+...||+||..+
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   62 (74)
T 2yur_A            8 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND   62 (74)
T ss_dssp             CCCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred             ccccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence            456678889999999999999999 7 99999999999999865557899999874

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.26  E-value=5e-13  Score=106.29  Aligned_cols=68  Identities=34%  Similarity=0.806  Sum_probs=54.4

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccC----CCCCCCCCCccCCCcCCCCCCCChHHHHH
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE----EIECCPVCNIDLGCVPLEKLRPDHTLQDV   88 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~----~~~~CP~CR~~l~~~~~~~lr~n~~L~~L   88 (441)
                      ..+.+.+.+.|+||++.|.+|+.+ +|||+||..||..|+...    ....||.|+..+   ....+.+|..|+++
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~---~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY---PFGNLKPNLHVANI   83 (85)
T ss_dssp             CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC---CTTCCEECSCCCSS
T ss_pred             HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC---CHHhCCcCHHHHHh
Confidence            345578889999999999999998 799999999999998763    268999999886   34456666655443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.25  E-value=8.7e-13  Score=116.16  Aligned_cols=67  Identities=25%  Similarity=0.621  Sum_probs=52.1

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      +.+.++++|+||+++|.+|+++ +|||+||..||..|+..  ...||.||..+.     ....+..+..++..++
T Consensus        48 ~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-----~~~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           48 DVLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR--KIECPICRKDIK-----SKTYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTT--CSBCTTTCCBCC-----CEEECHHHHHHHHHHH
T ss_pred             HhccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHc--CCcCCCCCCcCC-----CCCCccchhHHHHHHH
Confidence            3456779999999999999999 89999999999999864  478999998763     2223455555555553

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=6.7e-13  Score=105.55  Aligned_cols=67  Identities=30%  Similarity=0.768  Sum_probs=54.3

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhcc----CCCCCCCCCCccCCCcCCCCCCCChHHHHH
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD----EEIECCPVCNIDLGCVPLEKLRPDHTLQDV   88 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~----~~~~~CP~CR~~l~~~~~~~lr~n~~L~~L   88 (441)
                      .+.+.+.+.|+||++.|.+|+.+ +|||+||..||..|+..    .+...||.||..+.   ...+.+|..|+++
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~---~~~~~~n~~l~~~   83 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ---PENIRPNRHVANI   83 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC---SSSCCCSCCCCCC
T ss_pred             HHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC---HHhcCccHHHHHh
Confidence            45578889999999999999999 89999999999999875    24689999998863   4566677665443

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.24  E-value=3.9e-12  Score=118.07  Aligned_cols=72  Identities=19%  Similarity=0.266  Sum_probs=62.3

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP   94 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p   94 (441)
                      ...+.+.|.||||+++|.+||++ +|||+||+.||..|+...+ ..||.|+..+   ....+.+|..|.+++..+..
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l---~~~~L~pN~~Lk~~Ie~~~~  171 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-HFDPVTRSPL---TQDQLIPNLAMKEVIDAFIQ  171 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTC-SBCTTTCCBC---CGGGCEECHHHHHHHHHHHH
T ss_pred             ccCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCC-CCCCCCcCCC---ChhhCcchHHHHHHHHHHHH
Confidence            45577899999999999999999 8999999999999997533 3799999986   34579999999999999853

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.22  E-value=4.1e-12  Score=106.74  Aligned_cols=73  Identities=21%  Similarity=0.642  Sum_probs=58.4

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccC-CCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE-EIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP   94 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p   94 (441)
                      .+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+... +...||.|+..+.   ...+..|..+.++++.+..
T Consensus        15 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~---~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           15 INAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT---KRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC---TTTCBCCCSSSHHHHHHHH
T ss_pred             HHhccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC---HhhcCccHHHHHHHHHHHH
Confidence            34566789999999999999998 899999999999998753 3468999999863   4566667777777776654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=96.99  Aligned_cols=55  Identities=42%  Similarity=0.831  Sum_probs=48.0

Q ss_pred             hhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           16 VKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        16 v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      ...+.+.+.+.|+||++.|.+|+++.+|||+||..||..|+..  ...||+||..+.
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~   61 (72)
T 2djb_A            7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVH   61 (72)
T ss_dssp             CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred             hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccC
Confidence            3556678899999999999999998689999999999999964  478999998863

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.19  E-value=5.4e-12  Score=123.20  Aligned_cols=73  Identities=19%  Similarity=0.282  Sum_probs=63.0

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCC--CCccCCCcCCCCCCCChHHHHHHHHH
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPV--CNIDLGCVPLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~--CR~~l~~~~~~~lr~n~~L~~Lv~kl   92 (441)
                      ..+.....++||||+++|.+||++..|||+||+.||..|+...+...||+  |+..+   ....|++|..|.++++.+
T Consensus       174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l---~~~dL~pN~~L~~lve~~  248 (267)
T 3htk_C          174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV---SMRDFVRDPIMELRCKIA  248 (267)
T ss_dssp             CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE---CGGGEEECHHHHHHHHHH
T ss_pred             eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC---chhhCCcCHHHHHHHHHH
Confidence            33446788999999999999998657999999999999997655679999  99875   467899999999999887

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=4.4e-12  Score=101.93  Aligned_cols=56  Identities=23%  Similarity=0.626  Sum_probs=48.1

Q ss_pred             hhhhccccccccccccccccc----ceecCCCCCcchHHHHHHhhccC-CCCCCCCCCccCC
Q 013553           16 VKRETIAACMTCPICNTLLRD----ATTISECLHTFCRKCIYDKISDE-EIECCPVCNIDLG   72 (441)
Q Consensus        16 v~~e~Lee~LtCpIClelf~d----PvtLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l~   72 (441)
                      ...+.+.+.+.|+||++.|.+    |+.+ +|||+||..||..|+... ....||.||..+.
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A            7 GNLDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CSCCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             cChhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            455677889999999999999    9999 899999999999998753 3478999998864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=99.08  Aligned_cols=61  Identities=23%  Similarity=0.600  Sum_probs=50.1

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHH
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL   85 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L   85 (441)
                      .+.....+.|+||++.|.+|+++ +|||+||..||..|+..  ...||+||..+.    ..+.++..|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~----~~~~~~~~l   69 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRA--TPRCYICDQPTG----GIFNPAKEL   69 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHH--CSBCSSSCCBCC----SCCEECHHH
T ss_pred             cccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHC--CCcCCCcCcccc----ccCCcHHHH
Confidence            34567789999999999999998 89999999999999964  468999998863    456666444

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.4e-11  Score=94.63  Aligned_cols=53  Identities=32%  Similarity=0.730  Sum_probs=46.2

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhcc-CCCCCCCCCCccC
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD-EEIECCPVCNIDL   71 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~-~~~~~CP~CR~~l   71 (441)
                      .+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+.. .....||+||..+
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~   67 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV   67 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence            45577889999999999999999 89999999999999863 2457899999876

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.15  E-value=1.2e-11  Score=105.95  Aligned_cols=71  Identities=32%  Similarity=0.565  Sum_probs=58.8

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      .+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+... ...||+||..+.   ...+.++..+..++..+.
T Consensus        12 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~---~~~~~~~~~l~~~i~~l~   82 (118)
T 3hct_A           12 DPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDA-GHKCPVDNEILL---ENQLFPDNFAKREILSLM   82 (118)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH-CSBCTTTCCBCC---GGGCEECHHHHHHHHTSE
T ss_pred             ccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhC-CCCCCCCCCCcC---HHhcccCHHHHHHHccce
Confidence            45678899999999999999999 799999999999998753 348999999863   345668888888777763

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2.7e-11  Score=93.17  Aligned_cols=52  Identities=25%  Similarity=0.613  Sum_probs=45.5

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+.+.+.+.|+||++.+.+|+.+ .|||+||..||..|+. .....||+||..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~   60 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLS-SSSPKCTACQESI   60 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHT-TSSCCCTTTCCCC
T ss_pred             hhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHH-hCcCCCCCCCcCC
Confidence            34567889999999999999998 8999999999999996 3457899999876

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=3e-11  Score=91.96  Aligned_cols=50  Identities=34%  Similarity=0.735  Sum_probs=43.3

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhcc-CCCCCCCCC
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD-EEIECCPVC   67 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~-~~~~~CP~C   67 (441)
                      ..+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+.. .....||+|
T Consensus        13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            345678889999999999999999 89999999999999973 245789998

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.09  E-value=4.5e-11  Score=101.70  Aligned_cols=70  Identities=23%  Similarity=0.537  Sum_probs=54.0

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl   92 (441)
                      +.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||.||..+...  .-...+..+.+++..+
T Consensus        18 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~--~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           18 AHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKV-MGSYCPSCRYPCFPT--DLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGG--GCBCCCHHHHHHHHHC
T ss_pred             HhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHh--hccccHHHHHHHHHHh
Confidence            3456679999999999999998 89999999999999975 246899999987421  2223466666666555

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.08  E-value=2.1e-11  Score=108.55  Aligned_cols=77  Identities=18%  Similarity=0.373  Sum_probs=57.8

Q ss_pred             hhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCc------CCCCCCCChHHHH
Q 013553           14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV------PLEKLRPDHTLQD   87 (441)
Q Consensus        14 ~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~------~~~~lr~n~~L~~   87 (441)
                      ..+-.+.+++.+.|+||+++|.+|+++ .|||+||..||..|+.. +...||+||..+...      ....+.++..+..
T Consensus        21 ~~~~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~   98 (141)
T 3knv_A           21 KTLLGTKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSS-GPQNCAACVHEGIYEEGISILESSSAFPDNAARR   98 (141)
T ss_dssp             GGGTGGGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGG-SCEECHHHHHTTCCCTTTTEECGGGCEECHHHHH
T ss_pred             hhhhhccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhc-CCCCCCCCCCcccccccccccchhhhcccHHHHH
Confidence            334456788999999999999999998 89999999999999874 446899999864211      1123446666666


Q ss_pred             HHHHH
Q 013553           88 VRAKI   92 (441)
Q Consensus        88 Lv~kl   92 (441)
                      .+..+
T Consensus        99 ~i~~L  103 (141)
T 3knv_A           99 EVESL  103 (141)
T ss_dssp             HHHTS
T ss_pred             HHccc
Confidence            66555

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=7.8e-11  Score=87.62  Aligned_cols=50  Identities=36%  Similarity=0.777  Sum_probs=42.9

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhcc-CCCCCCCCC
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD-EEIECCPVC   67 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~-~~~~~CP~C   67 (441)
                      ..+.+.+.+.|+||++.|.+|+.+ +|||+||..||..|+.. .....||+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            8 ALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             HhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            345577889999999999999998 89999999999999763 345789998

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.02  E-value=7.8e-11  Score=106.58  Aligned_cols=71  Identities=32%  Similarity=0.565  Sum_probs=58.2

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      .+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||.||..+.   ...+.++..+.+++..+.
T Consensus        12 ~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~---~~~~~~~~~~~~~i~~l~   82 (170)
T 3hcs_A           12 DPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRD-AGHKCPVDNEILL---ENQLFPDNFAKREILSLM   82 (170)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH-HCSBCTTTCCBCC---GGGCEECHHHHHHHHTSE
T ss_pred             ccCCCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHh-CCCCCCCCccCcc---hhhhhhhHHHHHHHhhcc
Confidence            45688899999999999999998 89999999999999874 2348999998863   334667878877777663

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.4e-10  Score=90.57  Aligned_cols=48  Identities=21%  Similarity=0.552  Sum_probs=42.8

Q ss_pred             ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ..+.+.|+||++.|.+|+.+ +|||+||..||..|+...  ..||+||..+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~   59 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLG--KRCALCRQEI   59 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCS--SBCSSSCCBC
T ss_pred             CCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCC--CcCcCcCchh
Confidence            35678999999999999999 799999999999998743  7899999875

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.98  E-value=2.3e-10  Score=87.60  Aligned_cols=47  Identities=30%  Similarity=0.641  Sum_probs=40.3

Q ss_pred             cccccccccc-ccccce----ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNT-LLRDAT----TISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpICle-lf~dPv----tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +++.|+||++ +|.+|+    .+ +|||+||..||..|+.. ....||.||..+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~   53 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GAGNCPECGTPL   53 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHT-TSSSCTTTCCCC
T ss_pred             CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHc-CCCcCCCCCCcc
Confidence            3589999999 999994    55 89999999999999764 457899999886

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.97  E-value=3.2e-10  Score=87.59  Aligned_cols=48  Identities=29%  Similarity=0.879  Sum_probs=42.0

Q ss_pred             cccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           22 AACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        22 ee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .+.+.|+||++.|.+|       +.+ +|||+||..||..|+...  ..||+||..+.
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~   62 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA--NTCPTCRKKIN   62 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence            5679999999999998       677 899999999999998753  68999998863

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=2.2e-10  Score=87.78  Aligned_cols=51  Identities=27%  Similarity=0.776  Sum_probs=43.9

Q ss_pred             hhcccccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           18 RETIAACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+.+.+.+.|+||++.|.+|       +.+ +|||.||..||..|+..  ...||+||..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~   66 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI   66 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH--CSSCTTTCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc--CCCCCCCCCcc
Confidence            34567789999999999998       677 89999999999999875  46899999875

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.86  E-value=2.1e-09  Score=86.69  Aligned_cols=51  Identities=27%  Similarity=0.558  Sum_probs=40.8

Q ss_pred             cccccccccccccccc--cceecCC--CCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           20 TIAACMTCPICNTLLR--DATTISE--CLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        20 ~Lee~LtCpIClelf~--dPvtLs~--CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .++++++||||++.+.  +++.+ +  |||+||+.|+..++.. ....||.||..+.
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~   61 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTD-ENGLCPACRKPYP   61 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCS
T ss_pred             ccccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccC
Confidence            4677899999999874  34443 4  9999999999988754 5689999998863

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.86  E-value=8.3e-10  Score=83.28  Aligned_cols=46  Identities=33%  Similarity=0.911  Sum_probs=40.4

Q ss_pred             ccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +.+.|+||++.|.+|       +.+ +|||.||..||..|+..  ...||.||..+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~   54 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI   54 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred             CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc--CCCCCCCCccC
Confidence            468999999999988       667 89999999999999875  46899999886

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.85  E-value=3.9e-10  Score=84.68  Aligned_cols=45  Identities=24%  Similarity=0.651  Sum_probs=39.1

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .+.+.|+||++.|.+|+++ +|||+||..||..     ....||+||..+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEA-----SGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEc-CCCCcccHHHHcc-----CCCCCCcCCcEee
Confidence            5679999999999999999 7999999999876     2367999998763

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=7.2e-10  Score=85.79  Aligned_cols=51  Identities=27%  Similarity=0.670  Sum_probs=44.0

Q ss_pred             hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .+.+.+.+.|+||++.+.+ +.+ +|||.||..||..|+.  ....||+||..+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~   59 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSD--RHRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSC--CCSSCHHHHHCTT
T ss_pred             hhcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHH--CcCcCCCcCCccc
Confidence            3456778999999999999 777 8999999999999986  4578999998763

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.83  E-value=1.4e-09  Score=85.80  Aligned_cols=52  Identities=27%  Similarity=0.683  Sum_probs=42.7

Q ss_pred             hhcccccccccccccccccc---eecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           18 RETIAACMTCPICNTLLRDA---TTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dP---vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .+.+...+.|+||++.|.++   +.+ +|+|.||..||..|+..  ...||+||..+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~   63 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQ--HDSCPVCRKSLT   63 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTT--TCSCTTTCCCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHc--CCcCcCcCCccC
Confidence            44567789999999999865   334 79999999999999964  368999998863

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.80  E-value=1.2e-09  Score=86.43  Aligned_cols=48  Identities=21%  Similarity=0.512  Sum_probs=42.0

Q ss_pred             hhhcccccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ..+.+.+.+.|+||++.+.+|+++ +|||. ||..|+..|      ..||+||..+
T Consensus        17 ~~~~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i   65 (74)
T 4ic3_A           17 QLRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVI   65 (74)
T ss_dssp             HHHHHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC------SBCTTTCCBC
T ss_pred             HHhcCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC------ccCCCcCcCc
Confidence            344567789999999999999999 89999 999999876      5699999876

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.80  E-value=1.7e-09  Score=83.08  Aligned_cols=49  Identities=31%  Similarity=0.720  Sum_probs=40.8

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .....|+||++.+.+|+.+.+|||.||..||..|+..  ...||.||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~   51 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhH
Confidence            3467899999999998544489999999999999864  368999998763

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.79  E-value=2.4e-09  Score=78.87  Aligned_cols=49  Identities=24%  Similarity=0.663  Sum_probs=41.3

Q ss_pred             cccccccccccccccc---ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRD---ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~d---PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +++...|+||++.|.+   ++.+..|||.||..||..|+..  ...||+||..+
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~   53 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence            4567899999999987   7777349999999999999864  46899999764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.78  E-value=2.3e-09  Score=78.83  Aligned_cols=46  Identities=26%  Similarity=0.624  Sum_probs=39.2

Q ss_pred             cccccccccccccc----ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRD----ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~d----PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ....|+||++.|.+    ++.+ +|||.||..||..|+...  ..||+||..+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~   53 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEG--YRCPLCSGPS   53 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred             CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcC--CcCCCCCCcC
Confidence            45789999999966    6666 899999999999999754  7899999765

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.77  E-value=2.9e-09  Score=89.87  Aligned_cols=49  Identities=27%  Similarity=0.532  Sum_probs=40.1

Q ss_pred             ccccccccccccccce------------------ecCCCCCcchHHHHHHhhcc---CCCCCCCCCCccCC
Q 013553           23 ACMTCPICNTLLRDAT------------------TISECLHTFCRKCIYDKISD---EEIECCPVCNIDLG   72 (441)
Q Consensus        23 e~LtCpIClelf~dPv------------------tLs~CgHtFC~~CI~~~l~~---~~~~~CP~CR~~l~   72 (441)
                      .+..|+||++.|.+|.                  .+ +|+|.||..||..|+..   .....||+||..+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            3469999999997765                  44 89999999999999953   23578999998864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.76  E-value=4e-09  Score=81.34  Aligned_cols=50  Identities=26%  Similarity=0.733  Sum_probs=40.6

Q ss_pred             cccccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           20 TIAACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        20 ~Lee~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .......|+||++.|.   .++.+ +|||.||..||..|+...  ..||+||..+.
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~   62 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITN--KKCPICRVDIE   62 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHC--SBCTTTCSBSC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcC--CCCcCcCcccc
Confidence            3456789999999885   44566 899999999999998753  57999998763

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.75  E-value=3.1e-09  Score=90.69  Aligned_cols=47  Identities=30%  Similarity=0.894  Sum_probs=41.8

Q ss_pred             cccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+.+.|+||++.|.+|       +.+ +|||+||..||..|+...  ..||+|+..+
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~   58 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA--NTCPTCRKKI   58 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC--SBCTTTCCBC
T ss_pred             CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhC--CCCCCCCCcC
Confidence            4579999999999999       788 899999999999999743  5899999886

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=4.9e-09  Score=81.91  Aligned_cols=52  Identities=23%  Similarity=0.642  Sum_probs=42.1

Q ss_pred             hcccccccccccccccccceec--CCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           19 ETIAACMTCPICNTLLRDATTI--SECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtL--s~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      +.+.....|+||++.|.++..+  .+|+|.||..||..|+...  ..||+||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~   63 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVL   63 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCcccc
Confidence            4456789999999999766433  2799999999999999753  58999998863

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.72  E-value=4.9e-09  Score=85.90  Aligned_cols=48  Identities=31%  Similarity=0.700  Sum_probs=41.3

Q ss_pred             cccccccccccccccc---ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRD---ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~d---PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ..+...|+||++.|..   ++.+ +|||.||..||..|+..  ...||+||..+
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~   87 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK--SGTCPVCRCMF   87 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT--TCBCTTTCCBS
T ss_pred             cCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc--CCcCcCcCccC
Confidence            4567899999999877   7777 79999999999999964  46899999875

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=4.3e-09  Score=82.68  Aligned_cols=48  Identities=23%  Similarity=0.609  Sum_probs=41.2

Q ss_pred             ccccccccccccccccc---eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRDA---TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~dP---vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ..+...|+||++.|..+   +.+ +|+|.||..||..|+...  ..||+||..+
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~   70 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKAN--RTCPICRADS   70 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHC--SSCTTTCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcC--CcCcCcCCcC
Confidence            45678999999999887   666 799999999999998753  6899999876

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=6.3e-09  Score=82.31  Aligned_cols=47  Identities=21%  Similarity=0.512  Sum_probs=40.2

Q ss_pred             hhcccccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+.+.+.+.|+||++.+.+|+.+ +|||. ||..|+...      ..||+||..+
T Consensus        19 ~~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i   66 (75)
T 2ecg_A           19 LRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVI   66 (75)
T ss_dssp             HHHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC------SBCTTTCCBC
T ss_pred             HHcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC------CCCccCCcee
Confidence            34456779999999999999999 89999 999999642      5699999876

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.60  E-value=7e-09  Score=83.49  Aligned_cols=48  Identities=27%  Similarity=0.619  Sum_probs=41.0

Q ss_pred             hhcccccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccCC
Q 013553           18 RETIAACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .+.+.+...|+||++.+.+++.+ +|||. ||..|+..+      ..||+||..+.
T Consensus        12 ~~~l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i~   60 (79)
T 2yho_A           12 LRKLKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL------QSCPVCRSRVE   60 (79)
T ss_dssp             HHHHHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC------SBCTTTCCBCC
T ss_pred             HHcCCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc------CcCCCCCchhh
Confidence            34556678999999999999999 89999 999999765      26999998864

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.55  E-value=3.4e-08  Score=101.32  Aligned_cols=51  Identities=24%  Similarity=0.539  Sum_probs=43.5

Q ss_pred             cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .......|+||++.+.+|+.+ +|||.||..||..|+.. ....||.||..+.
T Consensus       328 ~~~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~  378 (389)
T 2y1n_A          328 MGSTFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQES-EGQGCPFCRCEIK  378 (389)
T ss_dssp             TTTSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHH-TCSBCTTTCCBCC
T ss_pred             hcCCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhc-CCCCCCCCCCccC
Confidence            344558999999999999999 89999999999999863 3468999998863

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=6.5e-08  Score=77.70  Aligned_cols=47  Identities=32%  Similarity=0.757  Sum_probs=38.9

Q ss_pred             cccccccccccccc--------------ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRD--------------ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~d--------------PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +...|+||++.|.+              ++.+..|+|.||..||..|+...  ..||+||..+
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~   74 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDW   74 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCc
Confidence            45779999999976              55554699999999999999753  6899999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.42  E-value=8e-08  Score=81.84  Aligned_cols=47  Identities=30%  Similarity=0.889  Sum_probs=41.3

Q ss_pred             cccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+.+.|+||++.|.++       +.+ +|||.||..||..|+..  ...||+||..+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~  123 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI  123 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred             CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc--CCCCCCCCCcC
Confidence            4678999999999987       777 89999999999999975  46899999876

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.40  E-value=9.4e-08  Score=73.54  Aligned_cols=47  Identities=19%  Similarity=0.278  Sum_probs=40.8

Q ss_pred             cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .|.||||+++|.+||.+..|||+||+.||..|+...  ..||+++..+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~   49 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLS   49 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCC
Confidence            489999999999999985699999999999999754  45999998863

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.37  E-value=3.7e-08  Score=80.91  Aligned_cols=48  Identities=19%  Similarity=0.468  Sum_probs=39.0

Q ss_pred             ccccccccccccccceec--CCCCCcchHHHHHHhhccC---C---CCCCCC--CCcc
Q 013553           23 ACMTCPICNTLLRDATTI--SECLHTFCRKCIYDKISDE---E---IECCPV--CNID   70 (441)
Q Consensus        23 e~LtCpIClelf~dPvtL--s~CgHtFC~~CI~~~l~~~---~---~~~CP~--CR~~   70 (441)
                      +.++|+||++.+..|..+  .+|||.||..||..++...   +   ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            468999999999988764  3699999999998887642   2   368999  9976

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.35  E-value=7.5e-08  Score=97.41  Aligned_cols=48  Identities=23%  Similarity=0.531  Sum_probs=42.0

Q ss_pred             hhhcccccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ..+.+.+.+.|+||++.+.+|+.+ +|||. ||..|+..+      ..||+||..+
T Consensus       288 ~~~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~------~~CP~CR~~i  336 (345)
T 3t6p_A          288 QLRRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL------RKCPICRGII  336 (345)
T ss_dssp             HHHHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC------SBCTTTCCBC
T ss_pred             HHHhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC------CcCCCCCCCc
Confidence            345567889999999999999999 89999 999999866      4699999876

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.30  E-value=3.6e-07  Score=77.69  Aligned_cols=47  Identities=26%  Similarity=0.547  Sum_probs=39.0

Q ss_pred             ccccccccccccccc-----------------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDA-----------------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dP-----------------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +...|+||++.|.++                 +.+.+|+|.|+..||..|+..  ...||+||..+
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcc
Confidence            457899999999866                 444489999999999999974  57899999874

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=8e-07  Score=69.46  Aligned_cols=44  Identities=23%  Similarity=0.626  Sum_probs=38.0

Q ss_pred             cccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccCC
Q 013553           22 AACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      .+...|+||++.+.+++.+ +|||. ||..|+..      ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~------~~~CP~CR~~i~   57 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY------FQQCPMCRQFVQ   57 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHH------CSSCTTTCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhc------CCCCCCCCcchh
Confidence            3478999999999999999 89999 99999984      256999998763

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.08  E-value=1.4e-06  Score=67.11  Aligned_cols=47  Identities=23%  Similarity=0.491  Sum_probs=39.5

Q ss_pred             ccccccccccccccceec-CCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDATTI-SECLHT-FCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dPvtL-s~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +...|+||++.+.+++.+ .+|||. ||..|+..+...  ...||+||..+
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i   55 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPI   55 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcch
Confidence            457899999999999864 279999 899999988863  36799999875

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.01  E-value=2.2e-06  Score=65.78  Aligned_cols=47  Identities=23%  Similarity=0.550  Sum_probs=38.9

Q ss_pred             ccccccccccccccceec-CCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDATTI-SECLHT-FCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dPvtL-s~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ....|+||++.+.+++.+ .+|||. ||..|+..+...  ...||+||..+
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i   54 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEI   54 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchh
Confidence            357899999999998754 369998 999999988754  36799999875

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.97  E-value=1e-06  Score=76.38  Aligned_cols=46  Identities=26%  Similarity=0.558  Sum_probs=0.4

Q ss_pred             cccccccccccccc-----------------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           24 CMTCPICNTLLRDA-----------------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        24 ~LtCpIClelf~dP-----------------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .-.|+||++.|.++                 +.+.+|+|.||..||..|+..  ...||+||..+
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~  110 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW  110 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence            36899999999763                 333479999999999999975  47899999764

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.87  E-value=7.3e-06  Score=66.21  Aligned_cols=49  Identities=20%  Similarity=0.580  Sum_probs=40.4

Q ss_pred             ccccccccccccc--ccceecCCCC-----CcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLL--RDATTISECL-----HTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf--~dPvtLs~Cg-----HtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .+...|.||++-+  .+++.+ +|.     |.|...||..|+.......||+|+..+
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~   68 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF   68 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred             CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence            3457899999877  467766 896     999999999999865557899999886

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.53  E-value=0.00012  Score=58.52  Aligned_cols=51  Identities=24%  Similarity=0.459  Sum_probs=41.2

Q ss_pred             cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      +..-.|.||..+|..-..-..|+|.|-..||.+|+.......||+|+..+.
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            345789999999975554446999999999999998655578999998753

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.13  E-value=0.00027  Score=59.67  Aligned_cols=45  Identities=22%  Similarity=0.537  Sum_probs=35.9

Q ss_pred             cccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        26 tCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      .|++|.-.+..-..+.+|.|.||.+|+..|... +...||.|+..+
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V   47 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPV   47 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCee
Confidence            689998877655555589999999999888753 457899999875

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.23  E-value=0.0025  Score=48.57  Aligned_cols=49  Identities=20%  Similarity=0.440  Sum_probs=39.0

Q ss_pred             cccccccccccccccceecCCCCC-----cchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDATTISECLH-----TFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~CgH-----tFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ++...|.||+.-..++..+ +|.+     .|-..||..|+...+...||+|+..+
T Consensus         4 ~~~~~CrIC~~~~~~~l~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~   57 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred             CCCCEeEEeecCCCCceec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence            3457899999877777655 7654     78999999999865668999999875

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.14  E-value=0.00086  Score=68.04  Aligned_cols=51  Identities=20%  Similarity=0.454  Sum_probs=38.5

Q ss_pred             ccccccccccccccc----cee---cCCCCCcchHHHHHHhhccCC---------CCCCCCCCccCC
Q 013553           22 AACMTCPICNTLLRD----ATT---ISECLHTFCRKCIYDKISDEE---------IECCPVCNIDLG   72 (441)
Q Consensus        22 ee~LtCpIClelf~d----Pvt---Ls~CgHtFC~~CI~~~l~~~~---------~~~CP~CR~~l~   72 (441)
                      +....|+||+.++.+    |..   ...|+|.|...||.+|+....         ...||.|+..+.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            456789999999876    322   125999999999999996421         147999998864

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=96.11  E-value=0.0038  Score=70.37  Aligned_cols=75  Identities=16%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             hhcccccccccccccccccceecCCCC-CcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           18 RETIAACMTCPICNTLLRDATTISECL-HTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        18 ~e~Lee~LtCpIClelf~dPvtLs~Cg-HtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      ...+-++|.|||-++++.+||++ +.| +||-+.+|.+|+..  ..+||.=|.++.   ...+.+|+.|+..|+.|...+
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~--~~tdP~Tr~~L~---~~~liPN~~Lk~~I~~w~~~~  958 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLS--DSTDPFNRMPLK---LEDVTPNEELRQKILCFKKQK  958 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTT--CCBCTTTCCBCC---GGGCEECHHHHHHHHHHHHHH
T ss_pred             ccCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhc--CCCCCCCCCCCC---cccccccHHHHHHHHHHHHHH
Confidence            34567789999999999999999 787 69999999999975  468999998863   456889999999999997655


Q ss_pred             hh
Q 013553           97 RR   98 (441)
Q Consensus        97 ~~   98 (441)
                      .+
T Consensus       959 ~~  960 (968)
T 3m62_A          959 KE  960 (968)
T ss_dssp             HT
T ss_pred             Hh
Confidence            43

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.04  E-value=0.0025  Score=52.30  Aligned_cols=32  Identities=22%  Similarity=0.723  Sum_probs=27.7

Q ss_pred             cccccccccc-cccccee--cCCCCCcchHHHHHHh
Q 013553           23 ACMTCPICNT-LLRDATT--ISECLHTFCRKCIYDK   55 (441)
Q Consensus        23 e~LtCpICle-lf~dPvt--Ls~CgHtFC~~CI~~~   55 (441)
                      +++.|+||.+ ++.+|+.  + .|+|+||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHH
Confidence            4689999996 5788988  7 79999999999873

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=94.54  E-value=0.045  Score=52.43  Aligned_cols=48  Identities=23%  Similarity=0.484  Sum_probs=39.5

Q ss_pred             cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ...|.||.+++..-+.=..|+|.|-..|+..|+.......||.|+...
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W  227 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW  227 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence            577999999987655443499999999999999765667999999764

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=91.68  E-value=0.13  Score=52.32  Aligned_cols=71  Identities=18%  Similarity=0.362  Sum_probs=54.8

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHH--HHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCI--YDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI--~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl   92 (441)
                      ..+.-.|.|||-...|..|+.-..|.|.-|++-.  ...........||+|...+   ....|+.|..+.+++...
T Consensus       210 ~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~---~~~dL~ID~~~~~IL~~~  282 (360)
T 4fo9_A          210 TSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA---AYESLILDGLFMEILNDC  282 (360)
T ss_dssp             CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC---CGGGEEEBHHHHHHHTTC
T ss_pred             eeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc---CHHHeEEcHHHHHHHHhC
Confidence            3455679999999999999999899999665543  3333334668999999884   567899999998887653

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=91.68  E-value=0.12  Score=52.58  Aligned_cols=71  Identities=24%  Similarity=0.465  Sum_probs=54.4

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHH--HHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCI--YDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI   92 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI--~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl   92 (441)
                      ..+.-.|.|||-...|..|+.-..|.|.-|++-.  ...........||+|...+   ....|+.|..+.+++...
T Consensus       244 ~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~---~~~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          244 TSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI---ALENLAISEFVDDILQNC  316 (371)
T ss_dssp             CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC---CGGGEEEBHHHHHHHTTS
T ss_pred             eeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc---CHHHeeEcHHHHHHHHhc
Confidence            3445679999999999999999899999776553  3333334679999999874   567888999888876543

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=80.18  E-value=0.97  Score=36.80  Aligned_cols=68  Identities=25%  Similarity=0.453  Sum_probs=42.8

Q ss_pred             cccccccccccccccceecCCC----CCcchHHHHHHhhccC---CCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013553           22 AACMTCPICNTLLRDATTISEC----LHTFCRKCIYDKISDE---EIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~C----gHtFC~~CI~~~l~~~---~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      ...+.|.+|.+-|.+.... .|    +|.||..|-..+++.+   ....||.-..-   .-...-.+-..++.-|..++
T Consensus        13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kC---pL~gS~~PWAFmqgEIatIL   87 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKC---PLVGSNVPWAFMQGEIATIL   87 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCC---BCSSSSSBCCCCHHHHHHHH
T ss_pred             CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCCCCcc---ccCCCcCchHHHhhHHHHHh
Confidence            4568999999999887766 46    7999999998887653   23566654321   11122234444555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	441
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-08
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-07
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	4e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-07
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-06
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-06
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	3e-05
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	1e-04
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	4e-04
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	5e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	8e-04
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	8e-04

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 4e-08
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKI-SDEEIECCPVCNIDLGCVPLEKLRPDH 83
          + CPIC  L+++  +   C H FC+ C+   +   +    CP+C  D+       L+   
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDI---TKRSLQEST 77

Query: 84 TLQDVRAKIFPLKR 97
              +  ++  +  
Sbjct: 78 RFSQLVEELLKIIC 91

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRP 81
          M C I   + R      +    F +  +      ++    P+ N  L    + ++ P
Sbjct: 1  MLCAISGKVPRRPVLSPKSRTIFEKSLLEQ--YVKDTGNDPITNEPLSIEEIVEIVP 55

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
           ++  E  +    C IC    +D      C H  C  C+     + E + CP C  ++
Sbjct: 13 YELYCEMGSTFQLCKICAENDKDVKIEP-CGHLMCTSCL-TSWQESEGQGCPFCRCEI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEK 78
          ++C IC  +L D      C H FCR CI   +       CP C        LE 
Sbjct: 24 ISCQICEHILADPVET-SCKHLFCRICILRCLKVMG-SYCPSCRYPCFPTDLES 75

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEK 78
          + +   + C  C  +LR+   +  C H FC  C+ D I      C            ++ 
Sbjct: 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYT-------PAWIQD 69

Query: 79 LRPDHTLQDV 88
          L+ +  L  +
Sbjct: 70 LKINRQLDSM 79

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQ 86
          CPIC     + +    CLH FC  CI   I   +   CP+C + +  V +  +  D    
Sbjct: 8  CPICLEDPSNYSMALPCLHAFCYVCITRWI--RQNPTCPLCKVPVESV-VHTIESDSEFG 64

Query: 87 D 87
          D
Sbjct: 65 D 65

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 6/47 (12%)

Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
          + C  C    +    +  CLHT C  C+     +     CP+C    
Sbjct: 7  LRCQQCQAEAKCPKLLP-CLHTLCSGCL-----EASGMQCPICQAPW 47

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL 85
           CPI   L++D   +     T+ R  I   +      C          +    L P++ L
Sbjct: 10 RCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQE----TLLHAGLTPNYVL 64

Query: 86 QD 87
          + 
Sbjct: 65 KS 66

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 24 CMTCPIC----NTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
             C IC          A   +  L    R C+   ++      C +C 
Sbjct: 6  VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67
          KR+ I   +   I   L+R+   I+    T+ RK I + +           
Sbjct: 1  KRD-IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTR 49

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 25 MTCPICNTLLRDAT---TISECLHTFCRKCIYDKISDEEIECCPVC 67
          + CP+C   L           C +  CR C   +I  +E   CP C
Sbjct: 1  VECPLCMEPLEIDDINFFPCTCGYQICRFCW-HRIRTDENGLCPAC 45

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 26 TCPICNTLLRDATT----ISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
           CP C T      +    ++ C HT C  C+ D +       CP C   L
Sbjct: 5  GCPRCKTTKYRNPSLKLMVNVCGHTLCESCV-DLLFVRGAGNCPECGTPL 53

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 26 TCPICNTLLRD---ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
           C +C   L D   A  +  C H F  +C+   +       CP+C + +
Sbjct: 7  ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH--STCPLCRLTV 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.46
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.44
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.41
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.4
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.32
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.28
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.11
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.91
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.9
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.83
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.77
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.71
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.52
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.19
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.17
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.74
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	85.81

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.2e-14  Score=115.43  Aligned_cols=72  Identities=21%  Similarity=0.240  Sum_probs=61.6

Q ss_pred             cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553           20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK   96 (441)
Q Consensus        20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~   96 (441)
                      .+-++|.||||+++|.+||++ +|||+||+.||..|+.. ....||.|+..+   ....+.+|..|+++++.|+..+
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~-~cGhtfc~~ci~~~l~~-~~~~cP~c~~~l---~~~~l~pN~~L~~~I~~~l~~~   74 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQR-VGHFNPVTRSPL---TQEQLIPNLAMKEVIDAFISEN   74 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHH-TCSSCTTTCCCC---CGGGCEECHHHHHHHHHHHTTC
T ss_pred             CCCccccCcCcCchhhhhccc-CCcCeecHHHHHHHHhc-CCccCCCccccc---cccccccHHHHHHHHHHHHHHC
Confidence            356789999999999999999 89999999999999864 446899999886   3457889999999999986543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.44  E-value=2.5e-14  Score=112.94  Aligned_cols=69  Identities=22%  Similarity=0.356  Sum_probs=60.3

Q ss_pred             ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013553           21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP   94 (441)
Q Consensus        21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p   94 (441)
                      +.++|.||||+++|.+||++ .|||+||+.||..|+.. ....||.|+..+   ....+.+|+.|+++|+.|..
T Consensus         5 iP~~l~CpIc~~~m~dPV~~-~cgh~fc~~ci~~~~~~-~~~~cP~~~~~l---~~~~l~pN~~L~~~I~~~~~   73 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA-GHKTCPKSQETL---LHAGLTPNYVLKSLIALWCE   73 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT-TCCBCTTTCCBC---SSCCCEECTTTHHHHHHHHH
T ss_pred             CCccCCCcCcCchhhCceEc-cCCCcchHHHHHHHHHH-CCCCCCcccccC---CcccccchHHHHHHHHHHHH
Confidence            56789999999999999999 79999999999999974 446799999886   34678899999999998853

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-14  Score=118.59  Aligned_cols=71  Identities=21%  Similarity=0.680  Sum_probs=59.0

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHHHHhhccC-CCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE-EIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      ..+.+.+.||||+++|.+|+++ +|||+||..||..|+... ....||.||..+   ....+++|..+.++++.+.
T Consensus        16 ~~l~~~l~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~---~~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          16 NAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI---TKRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC---CTTTCBCCCSSSHHHHHHH
T ss_pred             HhcccCcCCCccCchhCCeEEc-CCCCchhhHHHHHHHHHCCCCCcCcCCCCcC---ChhhCCcCHHHHHHHHHHH
Confidence            3456779999999999999999 799999999999998653 346899999886   3456888888888888774

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4e-14  Score=116.16  Aligned_cols=70  Identities=24%  Similarity=0.607  Sum_probs=60.3

Q ss_pred             hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013553           17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF   93 (441)
Q Consensus        17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~   93 (441)
                      ..+.|.+.++|+||+++|.+|+++.+|||+||..||..|+..    .||.||..+   ....+.+|..|.+++..|.
T Consensus        15 ~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~----~CP~Cr~~~---~~~~l~~n~~l~~lv~~~~   84 (97)
T d1jm7b_          15 ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT----GCPVCYTPA---WIQDLKINRQLDSMIQLCS   84 (97)
T ss_dssp             HHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT----BCSSSCCBC---SCSSCCCCHHHHHHHHHHH
T ss_pred             HHHhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc----cccccCCcC---chhhCcccHHHHHHHHHHH
Confidence            346678889999999999999987689999999999999853    499999875   4567899999999998874

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=3.4e-13  Score=109.36  Aligned_cols=67  Identities=25%  Similarity=0.594  Sum_probs=51.5

Q ss_pred             hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHH
Q 013553           19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVR   89 (441)
Q Consensus        19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv   89 (441)
                      +++.+.++|+||+++|.+|+++ +|||+||+.||..|+.. ....||.||..+.  ...-..+...+.+++
T Consensus        18 ~d~~~~l~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~p~~--~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          18 AHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKV-MGSYCPSCRYPCF--PTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH-TCSBCTTTCCBCC--GGGCBCCCHHHHHHH
T ss_pred             hhhccCcCCccCCcchhcceec-CCCChhhHHHHHHHHhh-CCCcCcccCCCCC--hhhccCHHHHHHHHh
Confidence            4566779999999999999999 89999999999999864 3457999999874  222223555555554

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-12  Score=108.11  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=59.8

Q ss_pred             cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013553           20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL   95 (441)
Q Consensus        20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~   95 (441)
                      .+-++|.||||+.+|.+||++..|+|+||+.||..|+..  ...||.|+..+   ....|.+|..|+++|+.|...
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~--~~~~P~~~~~l---~~~~L~pN~~Lr~~I~~~~~~   88 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPL---TMDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBC---CTTTSEECHHHHHHHHHHHHH
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh--cCCcccccccc---cchhhcchHHHHHHHHHHHHH
Confidence            455689999999999999999434469999999999964  45799999986   456899999999999998543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.5e-11  Score=97.43  Aligned_cols=48  Identities=25%  Similarity=0.601  Sum_probs=41.9

Q ss_pred             ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      ....|+||++.+.+|+.+ +|||+||..||..|+.. +...||+||..+.
T Consensus        22 ~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~wl~~-~~~~CP~Cr~~i~   69 (79)
T d1fbva4          22 TFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQES-EGQGCPFCRCEIK   69 (79)
T ss_dssp             CTTBCTTTSSSBCCEECS-SSCCEECHHHHHHHHHT-TCCSCTTTCCCCC
T ss_pred             CCCCCccCCCcCCCeEEe-CCCCeeeHHHHHHHHHH-CcCcCCCCCcCcc
Confidence            346799999999999998 79999999999999864 4467999999873

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=8.2e-12  Score=92.84  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553           25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG   72 (441)
Q Consensus        25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~   72 (441)
                      |.|+||+++|.+||.+..|||+||+.||..|+...  ..||.||..+.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~--~~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhc--cCCCccCCcCC
Confidence            58999999999999885699999999999999853  57999998864

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.91  E-value=1.7e-10  Score=88.62  Aligned_cols=45  Identities=33%  Similarity=0.781  Sum_probs=39.4

Q ss_pred             ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      -.|+||++.|.+++.+.+|||+||..||..|+..  ...||+||..+
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~i   50 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPV   50 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh--CCcCCCCCcch
Confidence            4699999999988776699999999999999975  46899999875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=8.6e-11  Score=87.62  Aligned_cols=43  Identities=26%  Similarity=0.710  Sum_probs=38.0

Q ss_pred             ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +.+.|+||++.|.+|+++ +|||+||..||..+     ...||+||..+
T Consensus         5 ~~l~C~IC~~~~~~p~~l-pCgH~fC~~Ci~~~-----~~~CP~Cr~~~   47 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEAS-----GMQCPICQAPW   47 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSS-----SSSCSSCCSSS
T ss_pred             CCCCCcccCcccCCCEEe-cCCCHHhHHHHHcC-----CCcCcCCCCcc
Confidence            568999999999999999 79999999998643     46799999886

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.3e-10  Score=84.38  Aligned_cols=48  Identities=27%  Similarity=0.576  Sum_probs=37.4

Q ss_pred             ccccccccccccccc----eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           23 ACMTCPICNTLLRDA----TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        23 e~LtCpIClelf~dP----vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ++..||||++.+..+    +.+.+|||+||..||..|+.. +...||.||..+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~~CP~CR~~i   53 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPL   53 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCc-CcCCCCCCCcCc
Confidence            468999999865332    233489999999999999864 345799999886

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.77  E-value=1.6e-09  Score=80.16  Aligned_cols=49  Identities=24%  Similarity=0.663  Sum_probs=40.2

Q ss_pred             cccccccccccccccc---ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           21 IAACMTCPICNTLLRD---ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        21 Lee~LtCpIClelf~d---PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +++...|+||++.|.+   .+.+..|+|.||..||..|+..  ...||+||..+
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh--CCcCCCCCCEe
Confidence            4667889999999864   3455469999999999999975  46899999764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.5e-09  Score=77.20  Aligned_cols=46  Identities=28%  Similarity=0.566  Sum_probs=36.2

Q ss_pred             ccccccccccccc---eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           25 MTCPICNTLLRDA---TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        25 LtCpIClelf~dP---vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      +.||||++.|...   +.+.+|||.||..||..|+.. ....||+||..+
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~-~~~~CP~CR~~~   49 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPY   49 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTT-SCCBCTTTCCBC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhh-cCCCCCccCCcC
Confidence            4799999988532   233379999999999999974 346899999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=2.2e-08  Score=83.16  Aligned_cols=49  Identities=27%  Similarity=0.529  Sum_probs=38.7

Q ss_pred             cccccccccccccc-----------------eecCCCCCcchHHHHHHhhccC---CCCCCCCCCccCC
Q 013553           24 CMTCPICNTLLRDA-----------------TTISECLHTFCRKCIYDKISDE---EIECCPVCNIDLG   72 (441)
Q Consensus        24 ~LtCpIClelf~dP-----------------vtLs~CgHtFC~~CI~~~l~~~---~~~~CP~CR~~l~   72 (441)
                      +..|+||++.|..+                 +.+.+|+|.||..||..|+...   ....||+||..++
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            45799999987643                 3344899999999999999743   3468999998864

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.19  E-value=2.8e-07  Score=68.36  Aligned_cols=49  Identities=22%  Similarity=0.509  Sum_probs=40.6

Q ss_pred             cccccccccccccccceecCCC-----CCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           22 AACMTCPICNTLLRDATTISEC-----LHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        22 ee~LtCpIClelf~dPvtLs~C-----gHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      ++...|+||++.+.++... +|     +|.||..||..|+...+...||+||..+
T Consensus         4 ed~~~C~IC~~~~~~~~~~-~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~   57 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVY   57 (60)
T ss_dssp             CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred             CCCCCCccCCccCCCceeE-ecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCee
Confidence            4568899999988877665 55     4999999999999765667999999875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.4e-07  Score=72.37  Aligned_cols=45  Identities=27%  Similarity=0.583  Sum_probs=35.0

Q ss_pred             cccccccccccc-----------------ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553           25 MTCPICNTLLRD-----------------ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL   71 (441)
Q Consensus        25 LtCpIClelf~d-----------------PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l   71 (441)
                      -.|+||+.-+.+                 ++.+..|||.||..||..|+..  ...||+||..+
T Consensus        22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~   83 (88)
T d3dplr1          22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW   83 (88)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred             CcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH--CCcCCCCCCcc
Confidence            358888876644                 2333479999999999999975  46799999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.8e-06  Score=66.91  Aligned_cols=46  Identities=24%  Similarity=0.512  Sum_probs=34.0

Q ss_pred             cccccccccccc--cceecCCCCCcchHHHHHHhhccC------CCCCCCCCCc
Q 013553           24 CMTCPICNTLLR--DATTISECLHTFCRKCIYDKISDE------EIECCPVCNI   69 (441)
Q Consensus        24 ~LtCpIClelf~--dPvtLs~CgHtFC~~CI~~~l~~~------~~~~CP~CR~   69 (441)
                      ...|+||++.+.  +.+.+..|+|.||..||..|+...      ....||.|.-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            468999999774  434444799999999999887632      1247998764

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=0.22  Score=37.73  Aligned_cols=44  Identities=30%  Similarity=0.717  Sum_probs=33.3

Q ss_pred             cccccccccccccceecCCC----CCcchHHHHHHhhccC---CCCCCCCCC
Q 013553           24 CMTCPICNTLLRDATTISEC----LHTFCRKCIYDKISDE---EIECCPVCN   68 (441)
Q Consensus        24 ~LtCpIClelf~dPvtLs~C----gHtFC~~CI~~~l~~~---~~~~CP~CR   68 (441)
                      -+.|.||.+.+.+.... .|    +|.||..|-..++..+   ....||.-.
T Consensus         8 ~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG~   58 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGE   58 (80)
T ss_dssp             SCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSS
T ss_pred             ceeeeeehhhhcCCceE-eCCCCcCCceeccccHHHHHhcCCCCcEECCCCC
Confidence            48999999999887766 46    7999999998877653   335666543