Citrus Sinensis ID: 013573

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccEEccccccccEEEccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccEEEEEEccccccccccccHEHcccEEEccccccccEEEEccccccccEEEEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccc
Coil and Loop (DISEMBL)
mvpadlnpqrseqyvqtqgqcqtqsfassptikgemtvssnelsllgpiqmattgtivpaevdsdepkqmgqptagiqashsdhkgggpsmpsddgynwrkygqkhvkgsefprsyykcthpncevkklfershdgqiTEIIYkgthdhpkpqlsrrysagnmmsiqeerpdkvssltcrdgsmygqmshametngtpdlspvanddsvepdvddddqyskRRKMDALVadvtpvvkpireprvvvqtlsevdilddgyrwrkygqkvvrgnpnprsyykctnagcpvrkhverashdpkAVITTyegkhnhdvptartsshdaagpsagngpcriiseeGEAISLDLgvgissatenrsneqpqALHSElahshphassssyKIIQANAVTAYSGVvnggmnqygsrgnptegrgvdfpplnhssypypqnigriltgp
Flexible Loop (DISEMBL)
MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIqashsdhkgggpsmpSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIiykgthdhpkpQLSRRYSAGNMMSIqeerpdkvsslTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDddqyskrrkmdalvadvtpvvkpireprvvvqtlsevdilddgyrwrkygqkvvrgnpnprsyykCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTartsshdaagpsAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPlnhssypypqnigriltgp
Low Complexity Region (SEG)
MVPADLNPQRSEqyvqtqgqcqtqSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANddsvepdvddddQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQalhselahshphassssYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP
Disordered region (IsUnstruct)
*************************************************************************************************NWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKG*********************************************************************************ALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHV**********I*******************************************************************************YKIIQANAVTAYSGVVNGG***************************************
Disordered Region (DISOPRED)
**********************************************************************************************DGYNWRKYGQ******EFPRSYYKCTHPNCEV*************EIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDD*****************************QTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH*************************************************************************************************************************GRI****
Disordered Region (DISEMBL)
*************************FASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDS***************************PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSI**********LTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH*****************GNGPCRIISEEGEAISLDLGVGISSATE************************SYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP
Disordered Region (DISPRO)
*******************************************************************************************PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHD*******************************************************************************************REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH**************************************************************************************************************************RILT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q93WV0	557	Probable WRKY transcripti	yes	no	0.95	0.750	0.553	1e-125
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.5	0.428	0.546	8e-69
Q9FG77	687	Probable WRKY transcripti	no	no	0.529	0.339	0.501	5e-68
O65590	568	Probable WRKY transcripti	no	no	0.552	0.427	0.512	2e-66
Q8S8P5	519	Probable WRKY transcripti	no	no	0.518	0.439	0.556	9e-66
Q9XI90	514	Probable WRKY transcripti	no	no	0.509	0.435	0.528	4e-65
Q93WU7	423	Probable WRKY transcripti	no	no	0.456	0.475	0.566	8e-61
Q9C5T3	309	Probable WRKY transcripti	no	no	0.409	0.582	0.524	9e-59
O22921	393	Probable WRKY transcripti	no	no	0.470	0.526	0.473	2e-55
Q9SI37	487	WRKY transcription factor	no	no	0.636	0.574	0.393	6e-54

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/452 (55%), Positives = 307/452 (67%), Gaps = 34/452 (7%)

Query: 1   MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSL-LGPIQMATTGTIVP 59
           MV A+L   RSE  V  QGQ    S +   +   +   SS+ELS    P QM  T + +P
Sbjct: 128 MVYAELGKIRSEPPVHFQGQGHGSSHSP--SSISDAAGSSSELSRPTPPCQMTPTSSDIP 185

Query: 60  AEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKC 119
           A  D +E          IQ S +D +G  PS+ +DDGYNWRKYGQKHVKGSEFPRSYYKC
Sbjct: 186 AGSDQEE---------SIQTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKC 236

Query: 120 THPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTC 179
           THPNCEVKKLFERSHDGQIT+IIYKGTHDHPKPQ  RR S G  M+ QEER DK  S T 
Sbjct: 237 THPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPGRRNSGG--MAAQEERLDKYPSSTG 294

Query: 180 RD--GSMYGQMSHAMETNGTPDLSPV-ANDDSVEP--------DVDDDDQYSKRRKMDAL 228
           RD  GS    +S+  E  G P++ P+ A+DD  E         + DDDD +SKRR+M+  
Sbjct: 295 RDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEAAASNRNKDEPDDDDPFSKRRRMEGA 354

Query: 229 VADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPV 288
           + ++TP+VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT  GCPV
Sbjct: 355 M-EITPLVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPV 413

Query: 289 RKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDL 348
           RKHVERASHDPKAVITTYEGKH+HDVPT+++SS+    P       R   +E + ISL+L
Sbjct: 414 RKHVERASHDPKAVITTYEGKHDHDVPTSKSSSNHEIQP-------RFRPDETDTISLNL 466

Query: 349 GVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSR 408
           GVGISS   N ++ + Q  + +L +   H +  +++ + A+ +++Y   +N GMNQYG R
Sbjct: 467 GVGISSDGPNHASNEHQHQNQQLVN-QTHPNGVNFRFVHASPMSSYYASLNSGMNQYGQR 525

Query: 409 GNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
               E +  D   LN+SSYPYP N+GR+ +GP
Sbjct: 526 ETKNETQNGDISSLNNSSYPYPPNMGRVQSGP 557

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  261 bits (667), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 134/245 (54%), Positives = 163/245 (66%), Gaps = 25/245 (10%)

Query: 92  PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPK 151
           P+DDGYNWRKYGQK VKGS+FPRSYYKCTHP C VKK  ERS DGQ+TEIIYKG H+H  
Sbjct: 248 PADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHEL 307

Query: 152 PQ-------------LSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTP 198
           PQ             ++ ++   N    + +R  + S +T  +     QMS A       
Sbjct: 308 PQKRGNNNGSCKSSDIANQFQTSNSSLNKSKRDQETSQVTTTE-----QMSEAS------ 356

Query: 199 DLSPVANDDSVEPDVDDDDQYSKRRKMDALVAD-VTPVVKPIREPRVVVQTLSEVDILDD 257
           D   V N ++   +  +D+   KRR  +  V++ V    + + EPR++VQT SEVD+LDD
Sbjct: 357 DSEEVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDD 416

Query: 258 GYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTA 317
           GYRWRKYGQKVV+GNP PRSYYKCT   C VRKHVERA+ DPKAV+TTYEGKHNHDVP A
Sbjct: 417 GYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAA 476

Query: 318 RTSSH 322
           RTSSH
Sbjct: 477 RTSSH 481

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  258 bits (660), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 145/289 (50%), Positives = 177/289 (61%), Gaps = 56/289 (19%)

Query: 83  DHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEII 142
           D   GG   P++DGYNWRKYGQK VKGSE+PRSYYKCT+PNC+VKK  ERS +G ITEII
Sbjct: 264 DSMAGG--APAEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEII 321

Query: 143 YKGTHDHPKPQLSRRYS-----AGNMMSIQEERPDKVSSLTC--------------RDGS 183
           YKG H+H KP  +RR          +   Q++R    + ++C               +GS
Sbjct: 322 YKGAHNHLKPPPNRRSGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGS 381

Query: 184 M---YGQMSHAMET-------NGTPDLSPVANDDSVEPDVDDDDQ--------------- 218
               YG  S +++        +G P +  V    +   D D+DD+               
Sbjct: 382 TRFEYGNQSGSIQAQTGGQYESGDP-VVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGG 440

Query: 219 ---------YSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVV 269
                     SKRRK++A  A+++   + IREPRVVVQT S+VDILDDGYRWRKYGQKVV
Sbjct: 441 GGGGEGDESESKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVV 500

Query: 270 RGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR 318
           +GNPNPRSYYKCT  GC VRKHVERASHD K+VITTYEGKHNHDVP AR
Sbjct: 501 KGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  253 bits (647), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/279 (51%), Positives = 172/279 (61%), Gaps = 36/279 (12%)

Query: 86  GGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEI 141
           G G SM    P+DDGYNWRKYGQK VKGSE+PRSYYKCTHPNCE KK  ERS +G I EI
Sbjct: 166 GLGDSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEI 225

Query: 142 IYKGTHDHPKPQLSRRYSAGNMMSIQEERPD--KVSSLTCRDGSM-----------YGQM 188
           IY G H H KP  +RR   G+  + Q+ + D  +       + ++           YG  
Sbjct: 226 IYTGDHIHSKPPPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSH 285

Query: 189 SHAMET-NGTPDLS-PVANDDSVEPDVDDDDQY-----------------SKRRKMDALV 229
           S +M+  NGT       A  D++  D ++DD+                  SKRRK++A  
Sbjct: 286 SGSMQVQNGTHQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESESKRRKLEAYA 345

Query: 230 ADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR 289
            + +   +  REPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNPRSYYKCT  GC V 
Sbjct: 346 TETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVT 405

Query: 290 KHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPS 328
           KHVERAS D K+V+TTY GKH H VP AR SSH  AG S
Sbjct: 406 KHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGAGSS 444

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  251 bits (641), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 137/246 (55%), Positives = 160/246 (65%), Gaps = 18/246 (7%)

Query: 94  DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ 153
           +DGYNWRKYGQK VKGSE PRSYYKCT PNC  KK  ERS +GQITEI+YKG+H+HPKPQ
Sbjct: 184 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQ 243

Query: 154 LSRR--------YSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVAN 205
            +RR        +SA    S+   R    S     + S +   S  M+         V +
Sbjct: 244 STRRSSSSSSTFHSAVYNASLDHNR-QASSDQPNSNNSFHQSDSFGMQQEDNTTSDSVGD 302

Query: 206 DDS------VEPDVDD--DDQYSKRRKMD-ALVADVTPVVKPIREPRVVVQTLSEVDILD 256
           D+       V  D +D   +  +KR K D           K +REPR+VVQT S++DILD
Sbjct: 303 DEFEQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILD 362

Query: 257 DGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT 316
           DGYRWRKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKHNHDVP 
Sbjct: 363 DGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPA 422

Query: 317 ARTSSH 322
           AR S +
Sbjct: 423 ARGSGY 428

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  249 bits (635), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/242 (52%), Positives = 158/242 (65%), Gaps = 18/242 (7%)

Query: 92  PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPK 151
           P+DDGYNWRKYGQK VKGSEFPRSYYKCT+P C VKK  ERS DGQ+TEIIYKG H+H  
Sbjct: 227 PADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEP 286

Query: 152 PQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYG----------QMSHAMETNGTPDLS 201
           PQ ++R +  N  +I     +     +    S +           Q     +   T  LS
Sbjct: 287 PQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTEHLS 346

Query: 202 PVANDDSV---EPDVDDDDQYS---KRRKMDALVADVTPVV--KPIREPRVVVQTLSEVD 253
             ++ + V   E DV + D+     KRR  +  +++  P    + + EPR++VQT SEVD
Sbjct: 347 EASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVD 406

Query: 254 ILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 313
           +LDDGYRWRKYGQKVV+GNP PRSYYKCT  GC VRKHVERA+ DPKAV+TTYEGKHNHD
Sbjct: 407 LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 466

Query: 314 VP 315
           +P
Sbjct: 467 LP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  234 bits (598), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 127/224 (56%), Positives = 151/224 (67%), Gaps = 23/224 (10%)

Query: 92  PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPK 151
           P+DDGYNWRKYGQK +KG E+PRSYYKCTH NC VKK  ERS DGQIT+IIYKG HDH +
Sbjct: 165 PADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHER 224

Query: 152 PQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEP 211
           PQ +RR   G                  RD +  G     ME++         +DD  + 
Sbjct: 225 PQ-NRRGGGG------------------RDSTEVGGAGQMMESSDDSGYRKDHDDDDDDD 265

Query: 212 DVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRG 271
           + D+D   SK R++D     V+   + + EP+++VQT SEVD+LDDGYRWRKYGQKVV+G
Sbjct: 266 EDDEDLPASKIRRIDG----VSTTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKG 321

Query: 272 NPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVP 315
           NP+PRSYYKCT   C VRKHVERAS D KAVITTYEGKHNHDVP
Sbjct: 322 NPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  228 bits (580), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 119/227 (52%), Positives = 144/227 (63%), Gaps = 47/227 (20%)

Query: 93  SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 151
           SDDGYNWRKYGQK VKGSE PRSY+KCT+PNC  KK  E S   GQ+ EI+YKG+H+HPK
Sbjct: 116 SDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPK 175

Query: 152 PQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEP 211
           PQ ++R S+  + +                        H   +NG               
Sbjct: 176 PQSTKRSSSTAIAA------------------------HQNSSNGDGK------------ 199

Query: 212 DVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRG 271
           D+ +D+  +KR K +          + ++EPRVVVQT S++DILDDGYRWRKYGQKVV+G
Sbjct: 200 DIGEDETEAKRWKRE----------ENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKG 249

Query: 272 NPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR 318
           NPNPRSYYKCT  GC VRKHVERA  DPK+VITTYEGKH H +PT R
Sbjct: 250 NPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 150/243 (61%), Gaps = 36/243 (14%)

Query: 93  SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP 152
           S+DGY WRKYGQK VK SE PRSY+KCT+P+C  KK+ E + DGQITEIIYKG H+HPKP
Sbjct: 165 SNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKP 224

Query: 153 QLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPD 212
           + ++R S  ++       P  V+     + +      H    N            S+  D
Sbjct: 225 EFTKRPSQSSL-------PSSVNGRRLFNPASVVSEPHDQSENS-----------SISFD 266

Query: 213 VDDDDQYS-----------------KRRKMDALVADVT-PVVKPIREPRVVVQTLSEVDI 254
             D +Q S                 KR K +     ++  V K ++EPRVVVQT+S++D+
Sbjct: 267 YSDLEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDV 326

Query: 255 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDV 314
           L DG+RWRKYGQKVV+GN NPRSYYKCT  GC V+K VER++ D +AV+TTYEG+HNHD+
Sbjct: 327 LIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDI 386

Query: 315 PTA 317
           PTA
Sbjct: 387 PTA 389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  211 bits (538), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 181/320 (56%), Gaps = 40/320 (12%)

Query: 42  ELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPS---DDGYN 98
           EL  L P  +A+   +  A   S++  ++ + ++G  +  S  +G  P +     +DGYN
Sbjct: 57  ELEKLVPHTVASQSEVDVASPVSEKAPKVSE-SSGALSLQSGSEGNSPFIREKVMEDGYN 115

Query: 99  WRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP------ 152
           WRKYGQK VKG+EF RSYY+CTHPNC+ KK  ERS  GQ+ + +Y G HDHPKP      
Sbjct: 116 WRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPLAGAVP 175

Query: 153 -QLSRRYSAGNMMSIQEERPDKVSSL--TC-----------RDGSMYGQMSHAM--ETNG 196
               +R      +S  E+R D VS +   C             GS    +      + +G
Sbjct: 176 INQDKRSDVFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPPKIHG 235

Query: 197 TPDLSPVANDDSVEPDV-------------DDDDQYSKRRKMDALVADVTPVVKPIREPR 243
              +S +   D V+ D+             D +   +KRRK    + +++PV +   + R
Sbjct: 236 GLHVSVIPPADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNI-ELSPVERSTNDSR 294

Query: 244 VVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVI 303
           +VV T +  DI++DGYRWRKYGQK V+G+P PRSYY+C++ GCPV+KHVER+SHD K +I
Sbjct: 295 IVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLI 354

Query: 304 TTYEGKHNHDVPTARTSSHD 323
           TTYEGKH+HD+P  R  +H+
Sbjct: 355 TTYEGKHDHDMPPGRVVTHN 374

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
255576310	562	WRKY transcription factor, putative [Ric	0.995	0.779	0.737	0.0
224056431	557	predicted protein [Populus trichocarpa]	0.988	0.780	0.711	1e-180
224114435	539	predicted protein [Populus trichocarpa]	0.993	0.810	0.695	1e-171
359494165	580	PREDICTED: probable WRKY transcription f	0.997	0.756	0.682	1e-170
297737535	552	unnamed protein product [Vitis vinifera]	0.997	0.795	0.682	1e-170
147818884	742	hypothetical protein VITISV_004662 [Viti	0.997	0.591	0.676	1e-168
356501612	588	PREDICTED: probable WRKY transcription f	0.984	0.736	0.650	1e-162
356569659	577	PREDICTED: probable WRKY transcription f	0.986	0.752	0.644	1e-161
166203236	492	transcription factor [Glycine max]	0.984	0.880	0.638	1e-159
356524334	577	PREDICTED: probable WRKY transcription f	0.986	0.752	0.628	1e-158

>gi|255576310|ref|XP_002529048.1| WRKY transcription factor, putative [Ricinus communis] gi|223531528|gb|EEF33359.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/445 (73%), Positives = 367/445 (82%), Gaps = 7/445 (1%)

Query: 1   MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPA 60
           +VPAD++ + +EQ VQ QG CQ QS ASSP +K EM VSSNE SL  P  + ++GT  P 
Sbjct: 120 LVPADVHHRITEQSVQVQGHCQNQSLASSPRVKSEMAVSSNEFSLSAP--LPSSGTSAPG 177

Query: 61  EVDSDEPKQMGQPTAGIQASHSDHKGG-GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKC 119
           EV+SDE  Q+G    G+QAS +DHKGG G SMPSDDGYNWRKYGQKHVKGSEFPRSYYKC
Sbjct: 178 EVESDELNQIGVSNNGLQASQTDHKGGSGISMPSDDGYNWRKYGQKHVKGSEFPRSYYKC 237

Query: 120 THPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTC 179
           THPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ SRRYS+G ++S+QE+R DK+ SL  
Sbjct: 238 THPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRYSSGAVLSMQEDRSDKILSLPG 297

Query: 180 RDGSM---YGQMSHAMETNGTPDLSPV-ANDDSVEPDVDDDDQYSKRRKMDALVADVTPV 235
           RD      YGQ+SH ++ NGTP+LSPV ANDDS+E   DDDD +SKRRKMD    +VTPV
Sbjct: 298 RDDKTSIAYGQVSHTIDPNGTPELSPVTANDDSIEGAEDDDDPFSKRRKMDTGGFEVTPV 357

Query: 236 VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERA 295
           VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERA
Sbjct: 358 VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERA 417

Query: 296 SHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSA 355
           SHDPKAVITTYEGKHNHDVP ARTSSHD  GP+A NG  RI SEE E ISLDLGVGISS 
Sbjct: 418 SHDPKAVITTYEGKHNHDVPMARTSSHDTTGPTAVNGASRIRSEESETISLDLGVGISST 477

Query: 356 TENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGR 415
           T+NRSN+Q QALHSEL+ S   AS SS++I+    +  Y GV+NGGMNQYGSR NP EGR
Sbjct: 478 TDNRSNDQQQALHSELSQSQNQASGSSFRIVPRATIAPYYGVLNGGMNQYGSRQNPNEGR 537

Query: 416 GVDFPPLNHSSYPYPQNIGRILTGP 440
            V+ PPL+HSSYPYPQN+GR+LTGP
Sbjct: 538 SVEIPPLSHSSYPYPQNVGRLLTGP 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056431|ref|XP_002298853.1| predicted protein [Populus trichocarpa] gi|222846111|gb|EEE83658.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 316/444 (71%), Positives = 357/444 (80%), Gaps = 9/444 (2%)

Query: 1   MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPA 60
           MV AD+N QRS Q  Q Q QC +QSFAS P +KGEM VS+NELSL   + M T+    PA
Sbjct: 119 MVSADINHQRSTQCAQVQSQCHSQSFASPPLVKGEMEVSTNELSLSASLHMVTSVASAPA 178

Query: 61  EVDSDEPKQMGQPTAGIQASHSDHKGG-GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKC 119
           EVDSDE  Q G  ++G+QAS SDH+ G  PSM SDDGYNWRKYGQKHVKGSEFPRSYYKC
Sbjct: 179 EVDSDELNQTGLSSSGLQASQSDHRAGTAPSMSSDDGYNWRKYGQKHVKGSEFPRSYYKC 238

Query: 120 THPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTC 179
           THPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ SRRY++G+++S+QE+R DK SSL  
Sbjct: 239 THPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRYASGSVLSMQEDRFDKSSSLPN 298

Query: 180 ---RDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVV 236
              +    YGQ+ HA+E NG  +LS  ANDD+ E   DDDD +SKRR++DA   DVTPVV
Sbjct: 299 QGDKSPGAYGQVPHAIEPNGALELSTGANDDTGEGAEDDDDPFSKRRRLDAGGFDVTPVV 358

Query: 237 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERAS 296
           KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERAS
Sbjct: 359 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERAS 418

Query: 297 HDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSAT 356
           HDPKAVITTYEGKHNHDVPTART+SHD AGPSA NGP RI  +E E ISLDLGVGISS T
Sbjct: 419 HDPKAVITTYEGKHNHDVPTARTNSHDMAGPSAVNGPSRIRPDENETISLDLGVGISSTT 478

Query: 357 ENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRG 416
           EN+S++Q QALH+EL      AS SS++++ A  +TAY GV+NGGMNQYGSR  P E R 
Sbjct: 479 ENQSSDQQQALHAELIKHENQASGSSFRVVHATPITAYYGVLNGGMNQYGSRQIPGESRS 538

Query: 417 VDFPPLNHSSYPYPQNIGRILTGP 440
           ++ PP     YPYPQN+GR+LTGP
Sbjct: 539 IEIPP-----YPYPQNMGRLLTGP 557

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114435|ref|XP_002316759.1| predicted protein [Populus trichocarpa] gi|222859824|gb|EEE97371.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 310/446 (69%), Positives = 360/446 (80%), Gaps = 9/446 (2%)

Query: 1   MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPA 60
           MV AD+N QRS Q V+ Q QCQ+QSF SSP++KGEM V +NEL+L  P+ M T+G+ VPA
Sbjct: 97  MVSADMNHQRSAQCVKVQSQCQSQSFPSSPSVKGEMAVCTNELTLSTPLHMVTSGSSVPA 156

Query: 61  EVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCT 120
           EVDSDE  QMG  ++G++AS S   G  P++ SDDGY WRKYGQKHVKGSEFPRSYYKCT
Sbjct: 157 EVDSDELNQMGLSSSGLRASQS---GSAPTVSSDDGYKWRKYGQKHVKGSEFPRSYYKCT 213

Query: 121 HPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCR 180
           HPNCEVKKLFE SHDGQITEIIYKGTHDHPKPQ SRRY++G+ + + EER DK SSL  +
Sbjct: 214 HPNCEVKKLFECSHDGQITEIIYKGTHDHPKPQPSRRYASGSGLFMLEERFDKFSSLPSQ 273

Query: 181 DGS---MYGQMSHAMETNGTPDLSP-VANDDSVEPDVDDDDQYSKR-RKMDALVADVTPV 235
           D      YGQ+SHA+E +G P+LSP   NDD+ E   DD D +SKR R++DA   DVTPV
Sbjct: 274 DDKSPGAYGQVSHAIEPDGAPELSPGTTNDDTGEGAEDDKDPFSKRSRRLDAGGFDVTPV 333

Query: 236 VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERA 295
           +KPIREPRVVVQT SEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERA
Sbjct: 334 IKPIREPRVVVQTQSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERA 393

Query: 296 SHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSA 355
           SHDPKAVITTYEGKHNHDVPTART+SHD AGPSA NG  R   ++ E ISLDLGVGISS 
Sbjct: 394 SHDPKAVITTYEGKHNHDVPTARTNSHDTAGPSAVNGTSRTRPDKNETISLDLGVGISST 453

Query: 356 TENRSNEQPQALHSELAHSHPHASS-SSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEG 414
           +EN S++Q QALH+EL      +SS SS++I+ A+ + AY GV+NGGMNQYGSR  P+EG
Sbjct: 454 SENLSSDQQQALHAELVRFENQSSSGSSFRIVHASPIAAYYGVLNGGMNQYGSRQIPSEG 513

Query: 415 RGVDFPPLNHSSYPYPQNIGRILTGP 440
           R ++ PPLN SSYPYPQN+G +LTGP
Sbjct: 514 RSIEIPPLNRSSYPYPQNVGSLLTGP 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494165|ref|XP_002274204.2| PREDICTED: probable WRKY transcription factor 20-like [Vitis vinifera]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 308/451 (68%), Positives = 347/451 (76%), Gaps = 12/451 (2%)

Query: 2   VPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAE 61
           V ADLN Q+ + ++  Q Q    S   SPT+K EM   SNELSL  P  M T+    PAE
Sbjct: 130 VSADLNHQQVKPFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAE 189

Query: 62  VDSDEPKQMGQPTAGIQASHSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYY 117
           VDSDE  Q G P  G+QAS SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYY
Sbjct: 190 VDSDELNQQGHPNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYY 249

Query: 118 KCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSL 177
           KCTHPNCEVKKLFER+HDGQI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL
Sbjct: 250 KCTHPNCEVKKLFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSL 309

Query: 178 TCRDG---SMYGQMSHAMETNGTPDLSPVA-NDDSVE----PDVDDDDQYSKRRKMDALV 229
             RD    S+YGQM+H ++ NGTP+LSPVA NDD VE     +VD+DD  SKRRKM+   
Sbjct: 310 IGRDDKSPSIYGQMAHNIDPNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGG 369

Query: 230 ADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR 289
            DVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR
Sbjct: 370 IDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR 429

Query: 290 KHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLG 349
           KHVERASHDPKAVITTYEGKHNHDVPTART+SHDAAG  A NG   I SEE + ISLDLG
Sbjct: 430 KHVERASHDPKAVITTYEGKHNHDVPTARTNSHDAAGQVALNGMPMIRSEENDTISLDLG 489

Query: 350 VGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRG 409
           VGI+SA+ENR N Q Q LH+EL  +    ++S+++ +QA  V+ Y GV+N GM+ YG R 
Sbjct: 490 VGINSASENRPNVQHQTLHAELVLTQTRTNNSNFQAVQATPVSRYYGVLNNGMDLYGFRE 549

Query: 410 NPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
           N  E R  + PPLNHSS P PQN+GRIL GP
Sbjct: 550 NLGESRSFETPPLNHSSNPCPQNMGRILMGP 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737535|emb|CBI26736.3| unnamed protein product [Vitis vinifera]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 308/451 (68%), Positives = 347/451 (76%), Gaps = 12/451 (2%)

Query: 2   VPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAE 61
           V ADLN Q+ + ++  Q Q    S   SPT+K EM   SNELSL  P  M T+    PAE
Sbjct: 102 VSADLNHQQVKPFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAE 161

Query: 62  VDSDEPKQMGQPTAGIQASHSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYY 117
           VDSDE  Q G P  G+QAS SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYY
Sbjct: 162 VDSDELNQQGHPNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYY 221

Query: 118 KCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSL 177
           KCTHPNCEVKKLFER+HDGQI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL
Sbjct: 222 KCTHPNCEVKKLFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSL 281

Query: 178 TCRDG---SMYGQMSHAMETNGTPDLSPVA-NDDSVE----PDVDDDDQYSKRRKMDALV 229
             RD    S+YGQM+H ++ NGTP+LSPVA NDD VE     +VD+DD  SKRRKM+   
Sbjct: 282 IGRDDKSPSIYGQMAHNIDPNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGG 341

Query: 230 ADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR 289
            DVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR
Sbjct: 342 IDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR 401

Query: 290 KHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLG 349
           KHVERASHDPKAVITTYEGKHNHDVPTART+SHDAAG  A NG   I SEE + ISLDLG
Sbjct: 402 KHVERASHDPKAVITTYEGKHNHDVPTARTNSHDAAGQVALNGMPMIRSEENDTISLDLG 461

Query: 350 VGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRG 409
           VGI+SA+ENR N Q Q LH+EL  +    ++S+++ +QA  V+ Y GV+N GM+ YG R 
Sbjct: 462 VGINSASENRPNVQHQTLHAELVLTQTRTNNSNFQAVQATPVSRYYGVLNNGMDLYGFRE 521

Query: 410 NPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
           N  E R  + PPLNHSS P PQN+GRIL GP
Sbjct: 522 NLGESRSFETPPLNHSSNPCPQNMGRILMGP 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818884|emb|CAN78297.1| hypothetical protein VITISV_004662 [Vitis vinifera]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 305/451 (67%), Positives = 347/451 (76%), Gaps = 12/451 (2%)

Query: 2   VPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAE 61
           V ++LN Q+ + ++  Q Q    S   SPT+K EM   SNELSL  P  M T+    PAE
Sbjct: 292 VGSNLNHQQVKPFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAE 351

Query: 62  VDSDEPKQMGQPTAGIQASHSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYY 117
           VDSDE  Q G P  G+QAS SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYY
Sbjct: 352 VDSDELNQQGHPNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYY 411

Query: 118 KCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSL 177
           KCTHPNCEVKKLFER+HDGQI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL
Sbjct: 412 KCTHPNCEVKKLFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSL 471

Query: 178 TCRDG---SMYGQMSHAMETNGTPDLSPVA-NDDSVE----PDVDDDDQYSKRRKMDALV 229
             RD    S+YGQM+H ++ NGTP+LSPVA NDD VE     +VD+DD  SKRRKM+   
Sbjct: 472 IGRDDKSPSIYGQMAHNIDPNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGG 531

Query: 230 ADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR 289
            DVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR
Sbjct: 532 IDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVR 591

Query: 290 KHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLG 349
           KHVERASHDPKAVITTYEGKHNHDVPTART+SHDAAG  A NG   I SEE + ISLDLG
Sbjct: 592 KHVERASHDPKAVITTYEGKHNHDVPTARTNSHDAAGQVALNGMPMIRSEENDTISLDLG 651

Query: 350 VGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRG 409
           VGI+SA+ENR N Q Q LH+EL  +    ++S+++ +QA  V+ Y GV+N GM+ YG R 
Sbjct: 652 VGINSASENRPNVQHQTLHAELVLTQTRTNNSNFQAVQATPVSRYYGVLNNGMDLYGFRE 711

Query: 410 NPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
           N  E R  + PPLNHSS P PQ++GRIL GP
Sbjct: 712 NLGESRSFETPPLNHSSNPCPQSMGRILMGP 742

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501612|ref|XP_003519618.1| PREDICTED: probable WRKY transcription factor 20-like [Glycine max]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/458 (65%), Positives = 339/458 (74%), Gaps = 25/458 (5%)

Query: 2   VPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAE 61
           VPAD N   S+Q  Q +G  + QSFASSP ++ E+TV SNELSL  P+QM ++    P +
Sbjct: 137 VPADFNNHVSKQSTQVEGPGKAQSFASSPLVESEITVPSNELSLSSPVQMVSSSASAPVD 196

Query: 62  VDSDEPKQMGQPTAGIQASHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYY 117
           VD DE    G    G+QASH + +G G S+     SDDGYNWRKYGQK VKGSEFPRSYY
Sbjct: 197 VDLDEINHKGNTATGLQASHVEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYY 256

Query: 118 KCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSL 177
           KCTHPNCEVKKLFERSHDGQITEI+YKGTHDHPKPQ S RYS G +M IQ ER DK +SL
Sbjct: 257 KCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQSSCRYSTGTVMYIQGERSDK-ASL 315

Query: 178 TCRD---GSMYGQMSHAMETNGTPDLSPVA-NDDSVE----------PDVDDDDQYSKRR 223
             RD    +MYGQ+SHA E N TP+ SPVA NDD +E           +VDDDD +SKRR
Sbjct: 316 AGRDDKASTMYGQVSHAAEPNSTPESSPVATNDDGLEGAGFVSNRNNEEVDDDDPFSKRR 375

Query: 224 KMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTN 283
           KM+    D+TPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTN
Sbjct: 376 KMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTN 435

Query: 284 AGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSA-GNGPCRIISEEGE 342
           AGCPVRKHVERASHDPKAVITTYEGKHNHDVP AR SSHD A P+A   G  RI  EE +
Sbjct: 436 AGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVPAATAGGQTRIKLEESD 495

Query: 343 AISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGM 402
            ISLDLG+GISSA E+RSN Q + LHSEL  +  HAS+S++K +   +   Y GV+N   
Sbjct: 496 TISLDLGMGISSAAEHRSNGQGKMLHSELGETQTHASNSNFKFVHTTSAPVYFGVLNNSS 555

Query: 403 NQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
           N YGSR N ++G     P LNHSSYP PQ++GRIL GP
Sbjct: 556 NPYGSRDNRSDG-----PSLNHSSYPCPQSMGRILLGP 588

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569659|ref|XP_003553015.1| PREDICTED: probable WRKY transcription factor 20-like [Glycine max]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 295/458 (64%), Positives = 332/458 (72%), Gaps = 24/458 (5%)

Query: 1   MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPA 60
           MVPAD +   SE+  Q  GQ + Q+F SSP +K E    SNELSL  P+QM  +G     
Sbjct: 126 MVPADFDNHASEKSTQIDGQGKAQAFDSSPLVKNESASPSNELSLSSPVQMDCSGGSARV 185

Query: 61  EVDSDEPKQMGQPTAGIQASHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSY 116
           E D DE       T G+QAS  D++G G S+     SDDGYNWRKYGQKHVKGSEFPRSY
Sbjct: 186 EGDLDELNPRSNITTGLQASQVDNRGSGLSVAADRVSDDGYNWRKYGQKHVKGSEFPRSY 245

Query: 117 YKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSS 176
           YKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ +RRYSAG +MS+QEER DKVS 
Sbjct: 246 YKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIMSVQEERSDKVS- 304

Query: 177 LTCRDGS---MYGQMSHAMETNGTPDLSPVANDDS-----------VEPDVDDDDQYSKR 222
           LT RDG+   M GQ SH  E +  P+LSPVA +D               +VDDDD +SKR
Sbjct: 305 LTSRDGNGSYMCGQGSHLAEPDSQPELSPVATNDGDLDGLGVLSNRNNDEVDDDDPFSKR 364

Query: 223 RKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT 282
           RKMD  +AD+TPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT
Sbjct: 365 RKMDLGIADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT 424

Query: 283 NAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGE 342
           N GCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR S HD AGP++ +G  RI  EE +
Sbjct: 425 NTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDMAGPASASGQTRIRPEESD 484

Query: 343 AISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGM 402
            ISLDLG+GIS A EN  N Q + + SE   S  H S+S++  +    V  Y GV+N   
Sbjct: 485 TISLDLGMGISPAAENTPNSQGRMMLSEFGDSQTHTSNSNFNFVHTTTVPGYFGVLNNNS 544

Query: 403 NQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
           N YGSR NP++G     P LNHS+YP PQNIGRIL GP
Sbjct: 545 NPYGSRENPSDG-----PSLNHSAYPCPQNIGRILMGP 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166203236|gb|ABY84658.1| transcription factor [Glycine max]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/459 (63%), Positives = 336/459 (73%), Gaps = 26/459 (5%)

Query: 2   VPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAE 61
           VPAD N   S+Q  Q +G  + QSFASSP ++ E+TV SNELSL  P+QM ++    P +
Sbjct: 40  VPADFNNHVSKQSTQVEGPGKAQSFASSPLVESEITVPSNELSLSSPVQMVSSSASAPVD 99

Query: 62  VDSDEPKQMGQPTAGIQASHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYY 117
           VD DE    G    G+QASH + +G G S+     SDDGYNWRKYGQK VKGSEFPRSYY
Sbjct: 100 VDLDEINHKGNTATGLQASHVEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYY 159

Query: 118 KCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSL 177
           KCTHPNCEVKKLFERSHDGQITEI+YKGTHDHPKPQ S RYS G +MSIQ ER DK +S+
Sbjct: 160 KCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSCRYSTGTVMSIQGERSDK-ASM 218

Query: 178 TCRDG---SMYGQMSHAMETNGTPDLSPVA-NDDSVE-----------PDVDDDDQYSKR 222
             RD    +MYGQ+SHA E N TP+ SPVA NDD +E            +VD+DD +SKR
Sbjct: 219 AGRDDKATAMYGQVSHAAEPNSTPESSPVATNDDGLEGVAGFVSNRTNEEVDNDDPFSKR 278

Query: 223 RKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT 282
           RKM+    D+TPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT
Sbjct: 279 RKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT 338

Query: 283 NAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGP-SAGNGPCRIISEEG 341
           NAGCPVRKHVERASHDPKAVITTYEGKHNHDVP AR SSHD A P +A  G  R   EE 
Sbjct: 339 NAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVPAAAAGGQTRTKLEES 398

Query: 342 EAISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGG 401
           + ISLDLG+GISSA E+RSN Q + LHSE   +  H SSS++K +   +   Y GV+N  
Sbjct: 399 DTISLDLGMGISSAAEHRSNGQGKMLHSEFGDTQTHTSSSNFKFVHTTSAPVYFGVLNNS 458

Query: 402 MNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
            N +GSR N ++G     P LN SSYP PQ++GRIL GP
Sbjct: 459 SNPFGSRDNRSDG-----PSLNRSSYPCPQSMGRILMGP 492

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524334|ref|XP_003530784.1| PREDICTED: probable WRKY transcription factor 20 [Glycine max]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/458 (62%), Positives = 330/458 (72%), Gaps = 24/458 (5%)

Query: 1   MVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPA 60
           MVPAD +   SE+  Q   Q + Q+F SS  +K E    SNELSL  P+QM  +G     
Sbjct: 126 MVPADFDNHASEKSTQIDSQGKAQAFDSSALVKNESASPSNELSLSSPVQMDCSGASARV 185

Query: 61  EVDSDEPKQMGQPTAGIQASHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSY 116
           E D DE       T G+QAS  D++G G ++     SDDGYNWRKYGQKHVKGSEFPRSY
Sbjct: 186 EGDLDELNPRSNITTGLQASQVDNRGSGLTVAAERVSDDGYNWRKYGQKHVKGSEFPRSY 245

Query: 117 YKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSS 176
           YKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ +RRYSAG +MS+QE+R DK +S
Sbjct: 246 YKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIMSVQEDRSDK-AS 304

Query: 177 LTCRD---GSMYGQMSHAMETNGTPDLSPVANDDS-----------VEPDVDDDDQYSKR 222
           LT RD    +M GQ SH  E +G P+L PVA +D               +VDDDD +SKR
Sbjct: 305 LTSRDDKGSNMCGQGSHLAEPDGKPELLPVATNDGDLDGLGVLSNRNNDEVDDDDPFSKR 364

Query: 223 RKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT 282
           RKMD  +AD+TPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT
Sbjct: 365 RKMDVGIADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT 424

Query: 283 NAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGE 342
           N GCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR S HD AGP++ +G  R+  EE +
Sbjct: 425 NTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDMAGPASASGQTRVRPEESD 484

Query: 343 AISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGM 402
            ISLDLG+GIS A EN SN Q + + SE   S  H S+S++K +       Y GV+N   
Sbjct: 485 TISLDLGMGISPAAENTSNSQGRMMLSEFGDSQIHTSNSNFKFVHTTTAPGYFGVLNNNS 544

Query: 403 NQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
           N YGS+ NP++G     P LNHS+YP PQNIGRIL GP
Sbjct: 545 NPYGSKENPSDG-----PSLNHSAYPCPQNIGRILMGP 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.95	0.750	0.526	9.7e-112
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.254	0.163	0.761	1e-71
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.238	0.204	0.672	2e-67
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.579	0.497	0.530	1.2e-65
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.247	0.191	0.688	2e-65
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.536	0.454	0.527	1.4e-62
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.181	0.258	0.8	1.6e-59
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.234	0.211	0.557	8.8e-57
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.511	0.572	0.493	9.9e-55
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.202	0.207	0.577	2.3e-48

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 238/452 (52%), Positives = 288/452 (63%)

Query:     1 MVPADLNPQRSEXXXXXXXXXXXXSFASSPTIKGEMTVSSNELSL-LGPIQMATTGTIVP 59
             MV A+L   RSE            S   SP+   +   SS+ELS    P QM  T + +P
Sbjct:   128 MVYAELGKIRSEPPVHFQGQGHGSSH--SPSSISDAAGSSSELSRPTPPCQMTPTSSDIP 185

Query:    60 AEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKC 119
             A  D +E          IQ S +D +G  PS+ +DDGYNWRKYGQKHVKGSEFPRSYYKC
Sbjct:   186 AGSDQEE---------SIQTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKC 236

Query:   120 THPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTC 179
             THPNCEVKKLFERSHDGQIT+IIYKGTHDHPKPQ  RR S G  M+ QEER DK  S T 
Sbjct:   237 THPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPGRRNSGG--MAAQEERLDKYPSSTG 294

Query:   180 RD--GSMYGQMSHAMETNGTPDLSPVANXXXXXXXXXXXXQ---------YSKRRKMDAL 228
             RD  GS    +S+  E  G P++ P++                       +SKRR+M+  
Sbjct:   295 RDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEAAASNRNKDEPDDDDPFSKRRRMEGA 354

Query:   229 VADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPV 288
             + ++TP+VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT  GCPV
Sbjct:   355 M-EITPLVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPV 413

Query:   289 RKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDL 348
             RKHVERASHDPKAVITTYEGKH+HDVPT+++SS+    P       R   +E + ISL+L
Sbjct:   414 RKHVERASHDPKAVITTYEGKHDHDVPTSKSSSNHEIQP-------RFRPDETDTISLNL 466

Query:   349 GVGISSATENRSNEQPQXXXXXXXXXXXXXXXXXYKIIQANAVTAYSGVVNGGMNQYGSR 408
             GVGISS   N ++ + Q                 ++ + A+ +++Y   +N GMNQYG R
Sbjct:   467 GVGISSDGPNHASNEHQHQNQQLVNQTHPNGVN-FRFVHASPMSSYYASLNSGMNQYGQR 525

Query:   409 GNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 440
                 E +  D   LN+SSYPYP N+GR+ +GP
Sbjct:   526 ETKNETQNGDISSLNNSSYPYPPNMGRVQSGP 557

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.0e-71, Sum P(2) = 1.0e-71
 Identities = 86/113 (76%), Positives = 95/113 (84%)

Query:   220 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYY 279
             SKRRK++A  A+++   + IREPRVVVQT S+VDILDDGYRWRKYGQKVV+GNPNPRSYY
Sbjct:   451 SKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYY 510

Query:   280 KCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNG 332
             KCT  GC VRKHVERASHD K+VITTYEGKHNHDVP AR SSH   G S GNG
Sbjct:   511 KCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHGGGGDS-GNG 562

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
 Identities = 72/107 (67%), Positives = 87/107 (81%)

Query:   221 KRRKMDALVADVTPVV--KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSY 278
             KRR  +  +++  P    + + EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP PRSY
Sbjct:   372 KRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 431

Query:   279 YKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAA 325
             YKCT  GC VRKHVERA+ DPKAV+TTYEGKHNHD+P A++SSH AA
Sbjct:   432 YKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSSSHAAA 478

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 139/262 (53%), Positives = 165/262 (62%)

Query:    66 EPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCE 125
             E  Q  + T+ I       +      P+DDGYNWRKYGQK VKGS+FPRSYYKCTHP C 
Sbjct:   222 ETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACP 281

Query:   126 VKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMS--IQEERPDKVSSL--TCRD 181
             VKK  ERS DGQ+TEIIYKG H+H  PQ  R  + G+  S  I  +     SSL  + RD
Sbjct:   282 VKKKVERSLDGQVTEIIYKGQHNHELPQ-KRGNNNGSCKSSDIANQFQTSNSSLNKSKRD 340

Query:   182 GSMYGQMSHAMETNGTPDLSPVANXXXXXXXXXXXXQYSKRRKMDALVAD-VTPVVKPIR 240
                  Q++   + +   D   V N               KRR  +  V++ V    + + 
Sbjct:   341 QET-SQVTTTEQMSEASDSEEVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVT 399

Query:   241 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPK 300
             EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP PRSYYKCT   C VRKHVERA+ DPK
Sbjct:   400 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPK 459

Query:   301 AVITTYEGKHNHDVPTARTSSH 322
             AV+TTYEGKHNHDVP ARTSSH
Sbjct:   460 AVVTTYEGKHNHDVPAARTSSH 481

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 75/109 (68%), Positives = 85/109 (77%)

Query:   220 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYY 279
             SKRRK++A   + +   +  REPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNPRSYY
Sbjct:   336 SKRRKLEAYATETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 395

Query:   280 KCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPS 328
             KCT  GC V KHVERAS D K+V+TTY GKH H VP AR SSH  AG S
Sbjct:   396 KCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGAGSS 444

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 133/252 (52%), Positives = 159/252 (63%)

Query:    87 GGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGT 146
             G      +DGYNWRKYGQK VKGSE PRSYYKCT PNC  KK  ERS +GQITEI+YKG+
Sbjct:   177 GREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGS 236

Query:   147 HDHPKPQLSRRYSAGNMM--------SIQEER------PDKVSSLTCRDG-SMYGQMSHA 191
             H+HPKPQ +RR S+ +          S+   R      P+  +S    D   M  + +  
Sbjct:   237 HNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTT 296

Query:   192 METNGTPDLSPVANXXXXXXXXXXXXQYSKRRKMDALVADVTPV-VKPIREPRVVVQTLS 250
              ++ G  +    ++              +KR K D           K +REPR+VVQT S
Sbjct:   297 SDSVGDDEFEQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTS 356

Query:   251 EVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKH 310
             ++DILDDGYRWRKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH
Sbjct:   357 DIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKH 416

Query:   311 NHDVPTARTSSH 322
             NHDVP AR S +
Sbjct:   417 NHDVPAARGSGY 428

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 64/80 (80%), Positives = 71/80 (88%)

Query:   239 IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHD 298
             ++EPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNPRSYYKCT  GC VRKHVERA  D
Sbjct:   217 VKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQD 276

Query:   299 PKAVITTYEGKHNHDVPTAR 318
             PK+VITTYEGKH H +PT R
Sbjct:   277 PKSVITTYEGKHKHQIPTPR 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 58/104 (55%), Positives = 81/104 (77%)

Query:   220 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYY 279
             +KRRK    + +++PV +   + R+VV T +  DI++DGYRWRKYGQK V+G+P PRSYY
Sbjct:   272 AKRRKKGGNI-ELSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYY 330

Query:   280 KCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHD 323
             +C++ GCPV+KHVER+SHD K +ITTYEGKH+HD+P  R  +H+
Sbjct:   331 RCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGRVVTHN 374

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 114/231 (49%), Positives = 152/231 (65%)

Query:    90 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDH 149
             S  S+DGY WRKYGQK VK SE PRSY+KCT+P+C  KK+ E + DGQITEIIYKG H+H
Sbjct:   162 SRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNH 221

Query:   150 PKPQLSRRYSAGNM-MSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANXXX 208
             PKP+ ++R S  ++  S+   R    +S+       + Q  ++  +    DL   +    
Sbjct:   222 PKPEFTKRPSQSSLPSSVNGRRLFNPASVVSEP---HDQSENSSISFDYSDLEQKSFKSE 278

Query:   209 XXXXXXXXXQYS-KRRKMDALVADVT-PVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQ 266
                      Q   KR K +     ++  V K ++EPRVVVQT+S++D+L DG+RWRKYGQ
Sbjct:   279 YGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQ 338

Query:   267 KVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTA 317
             KVV+GN NPRSYYKCT  GC V+K VER++ D +AV+TTYEG+HNHD+PTA
Sbjct:   339 KVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
 Identities = 56/97 (57%), Positives = 67/97 (69%)

Query:    93 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP 152
             S DGYNWRKYGQK VKGSE PRSYYKCTHP C VKK  ERS +GQ++EI+Y+G H+H KP
Sbjct:   164 SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKP 223

Query:   153 Q--LSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQ 187
                L RR S+      Q+  P  ++S    +GSM GQ
Sbjct:   224 SCPLPRRASSSISSGFQKP-PKSIAS----EGSM-GQ 254

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93WV0	WRK20_ARATH	No assigned EC number	0.5530	0.95	0.7504	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00012605 hypothetical protein (558 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	1e-36
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-34
smart00774	59	smart00774, WRKY, DNA binding domain	3e-34
smart00774	59	smart00774, WRKY, DNA binding domain	7e-29

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  128 bits (323), Expect = 1e-36
 Identities = 41/59 (69%), Positives = 49/59 (83%)

Query: 255 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 313
           LDDGY WRKYGQK V+G+P PRSYY+CT+ GCPV+K VER+S DP+ V  TYEG+HNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  121 bits (306), Expect = 3e-34
 Identities = 43/60 (71%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 93  SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 151
            DDGYNWRKYGQK VKGS FPRSYY+CT P C VKK  ERS  D QI EI Y+G H+HPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  121 bits (306), Expect = 3e-34
 Identities = 37/59 (62%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 255 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNA-GCPVRKHVERASHDPKAVITTYEGKHNH 312
           LDDGY+WRKYGQKV++G+P PRSYY+CT   GCP +K V+R+  DP  V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  107 bits (269), Expect = 7e-29
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 94  DDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERS-HDGQITEIIYKGTHDH 149
           DDGY WRKYGQK +KGS +PRSYY+CT+   C  KK  +RS  D  + E+ Y+G H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	90.97
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	88.0
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	86.4

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=4.5e-31  Score=206.74  Aligned_cols=59  Identities=66%  Similarity=1.367  Sum_probs=52.6

Q ss_pred             CCcCchhhhccCcccCCCCCCCcccccCCCCCCcccchhhccCCCCeEEEEEeccCCCC
Q 013573          255 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD  313 (440)
Q Consensus       255 ~~DGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~  313 (440)
                      ++|||+|||||||.|+|+++||+||||+..+|+|+|+|||+.+|+.+|+|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=5.7e-30  Score=200.11  Aligned_cols=58  Identities=64%  Similarity=1.321  Sum_probs=56.5

Q ss_pred             CCcCchhhhccCcccCCCCCCCcccccCC-CCCCcccchhhccCCCCeEEEEEeccCCC
Q 013573          255 LDDGYRWRKYGQKVVRGNPNPRSYYKCTN-AGCPVRKHVERASHDPKAVITTYEGKHNH  312 (440)
Q Consensus       255 ~~DGy~WRKYGQK~ikgn~~pRsYYrCt~-~gC~akK~Ver~~~D~~~~~~tY~G~HnH  312 (440)
                      ++|||+|||||||.|+|+++||+|||||. +||+|+|+|||+.+|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999998 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=8.7e-30  Score=199.52  Aligned_cols=59  Identities=61%  Similarity=1.230  Sum_probs=50.8

Q ss_pred             CCCCccccccCccCCCCCCCCCCcccccCCCcceeeeEEecc-CCceEEEEecCCCCCCC
Q 013573           93 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK  151 (440)
Q Consensus        93 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ver~~-dg~~~~i~Y~G~H~H~~  151 (440)
                      .+|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.++.|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            489999999999999999999999999999999999999986 88999999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=1.1e-28  Score=193.02  Aligned_cols=57  Identities=58%  Similarity=1.134  Sum_probs=54.8

Q ss_pred             CCCCccccccCccCCCCCCCCCCcccccC-CCcceeeeEEecc-CCceEEEEecCCCCC
Q 013573           93 SDDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERSH-DGQITEIIYKGTHDH  149 (440)
Q Consensus        93 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~akK~ver~~-dg~~~~i~Y~G~H~H  149 (440)
                      .+|||+|||||||.|+|+++||+|||||+ ++|+|+|+||++. |+.+++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 9999999999985 899999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.97  E-value=0.13  Score=38.47  Aligned_cols=49  Identities=22%  Similarity=0.565  Sum_probs=25.0

Q ss_pred             CCCCCccccccCccCCCCCCCCCCcccccCC---CcceeeeEEeccCCceEEEEecCCCCC
Q 013573           92 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHP---NCEVKKLFERSHDGQITEIIYKGTHDH  149 (440)
Q Consensus        92 ~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~---~C~akK~ver~~dg~~~~i~Y~G~H~H  149 (440)
                      ..-|||.-+++...      ..+.|++|+..   +|+|+=.+. ..++  ..+...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~-~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD-AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE---TT--EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE-CCCC--EEEECCCccCC
Confidence            45788887776555      44689999864   799977666 2233  33445589999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=88.00  E-value=0.49  Score=38.57  Aligned_cols=29  Identities=24%  Similarity=0.487  Sum_probs=24.7

Q ss_pred             CcceeeeEEeccCCceEEEEecCCCCCCC
Q 013573          123 NCEVKKLFERSHDGQITEIIYKGTHDHPK  151 (440)
Q Consensus       123 ~C~akK~ver~~dg~~~~i~Y~G~H~H~~  151 (440)
                      +|+|+=.+.+..+|....+.+..+|||+.
T Consensus        61 gC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   61 GCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             CCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            59998888777788888888999999985

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.40  E-value=0.13  Score=38.52  Aligned_cols=49  Identities=31%  Similarity=0.716  Sum_probs=25.4

Q ss_pred             CCCcCchhhhccCcccCCCCCCCcccccCC---CCCCcccchhhccCCCCeEEEEEeccCCC
Q 013573          254 ILDDGYRWRKYGQKVVRGNPNPRSYYKCTN---AGCPVRKHVERASHDPKAVITTYEGKHNH  312 (440)
Q Consensus       254 ~~~DGy~WRKYGQK~ikgn~~pRsYYrCt~---~gC~akK~Ver~~~D~~~~~~tY~G~HnH  312 (440)
                      ++-|||.-++....      ....|++|+.   .+|+|+=.+.  .++ ..+ +...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~~~-~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-GRV-VRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-TEE-EE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-CEE-EECCCccCC
Confidence            56789987765544      4568999984   3899988877  223 233 445599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	440
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		4e-31
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		8e-27

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 246 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITT 305
           VQT SEVD+LDDGYRWRKYGQKVV+GNP PRSYYKCT  GC VRKHVERA+ DPKAV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 306 YEGKHNHDVP 315
           YEGKHNHD+P
Sbjct: 68  YEGKHNHDLP 77

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 64/73 (87%)
Query: 243 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAV 302
           R+VV T +  DI++DGYRWRKYGQK V+G+P PRSYY+C++ GCPV+KHVER+SHD K +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 303 ITTYEGKHNHDVP 315
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-47
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-25
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-45
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	7e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  156 bits (397), Expect = 1e-47
 Identities = 59/76 (77%), Positives = 64/76 (84%)

Query: 240 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDP 299
                 VQT SEVD+LDDGYRWRKYGQKVV+GNP PRSYYKCT  GC VRKHVERA+ DP
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 300 KAVITTYEGKHNHDVP 315
           KAV+TTYEGKHNHD+P
Sbjct: 62  KAVVTTYEGKHNHDLP 77

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 98.7 bits (246), Expect = 1e-25
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 94  DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKP 152
           DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  151 bits (384), Expect = 1e-45
 Identities = 50/75 (66%), Positives = 64/75 (85%)

Query: 243 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAV 302
           R+VV T +  DI++DGYRWRKYGQK V+G+P PRSYY+C++ GCPV+KHVER+SHD K +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 303 ITTYEGKHNHDVPTA 317
           ITTYEGKH+HD+P  
Sbjct: 62  ITTYEGKHDHDMPPG 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 99.1 bits (247), Expect = 7e-26
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 94  DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKP 152
           +DGY WRKYGQK VKGS +PRSYY+C+ P C VKK  ERS HD ++    Y+G HDH  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 48/232 (20%)

Query: 186 GQMSHAMETNGTPDLSPVANDDSVEP-DVDDDDQYSK----RRKMDALVADVTPVVKPIR 240
           G+  +  +     D+  V  D  V+  D  D     K    + ++D ++     V   +R
Sbjct: 12  GEHQYQYK-----DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 241 -------EPRVVVQTLSEVDILDDGYRW--RKYGQKVVRGNPNPRSYYKCT----NAGCP 287
                  +   +VQ   E ++L   Y++       +  + +   R Y +      N    
Sbjct: 67  LFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 288 VRK-HVERASHDPKAVITT--YEGKHNHDVPTARTSSHDAAGPSAG-----NGPCRIISE 339
             K +V R    P   +     E +   +V           G  +G        C     
Sbjct: 126 FAKYNVSR--LQPYLKLRQALLELRPAKNV-----LIDGVLG--SGKTWVALDVCL---S 173

Query: 340 EGEAISLDLGVG-ISSATENRSN---EQPQALHSELAHSHPHASSSSYKIIQ 387
                 +D  +  ++    N      E  Q L  ++  +    S  S  I  
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=2.2e-35  Score=239.67  Aligned_cols=75  Identities=67%  Similarity=1.285  Sum_probs=72.7

Q ss_pred             CceeeeccccccCCCcCchhhhccCcccCCCCCCCcccccCCCCCCcccchhhccCCCCeEEEEEeccCCCCCCC
Q 013573          242 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT  316 (440)
Q Consensus       242 ~~v~v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~  316 (440)
                      .||+|++.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999986

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=6e-35  Score=238.11  Aligned_cols=75  Identities=79%  Similarity=1.317  Sum_probs=69.6

Q ss_pred             CceeeeccccccCCCcCchhhhccCcccCCCCCCCcccccCCCCCCcccchhhccCCCCeEEEEEeccCCCCCCC
Q 013573          242 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT  316 (440)
Q Consensus       242 ~~v~v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~  316 (440)
                      .+|++++.+++++++|||+|||||||.|||+++||+|||||++||+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999884

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=3e-30  Score=209.62  Aligned_cols=64  Identities=55%  Similarity=1.029  Sum_probs=59.9

Q ss_pred             CCCCCCCccccccCccCCCCCCCCCCcccccCCCcceeeeEEecc-CCceEEEEecCCCCCCCCC
Q 013573           90 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  153 (440)
Q Consensus        90 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ver~~-dg~~~~i~Y~G~H~H~~p~  153 (440)
                      ..+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus        11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            345799999999999999999999999999999999999999975 7899999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=3.6e-30  Score=209.97  Aligned_cols=64  Identities=53%  Similarity=1.001  Sum_probs=59.6

Q ss_pred             CCCCCCCccccccCccCCCCCCCCCCcccccCCCcceeeeEEec-cCCceEEEEecCCCCCCCCC
Q 013573           90 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKPQ  153 (440)
Q Consensus        90 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ver~-~dg~~~~i~Y~G~H~H~~p~  153 (440)
                      ..+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+ .|+.++.|+|+|+|||+.|.
T Consensus        14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            34589999999999999999999999999999999999999996 58899999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	8e-36
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	3e-25

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  124 bits (313), Expect = 8e-36
 Identities = 59/70 (84%), Positives = 64/70 (91%)

Query: 246 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITT 305
           VQT SEVD+LDDGYRWRKYGQKVV+GNP PRSYYKCT  GC VRKHVERA+ DPKAV+TT
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 306 YEGKHNHDVP 315
           YEGKHNHD+P
Sbjct: 61  YEGKHNHDLP 70

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 95.7 bits (238), Expect = 3e-25
 Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 92  PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHP 150
             DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H 
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 68

Query: 151 KP 152
            P
Sbjct: 69  LP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.96

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.4e-35  Score=231.09  Aligned_cols=71  Identities=83%  Similarity=1.420  Sum_probs=68.2

Q ss_pred             eeccccccCCCcCchhhhccCcccCCCCCCCcccccCCCCCCcccchhhccCCCCeEEEEEeccCCCCCCC
Q 013573          246 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT  316 (440)
Q Consensus       246 v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~  316 (440)
                      |++.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+|+|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999885

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.5e-30  Score=206.85  Aligned_cols=62  Identities=55%  Similarity=1.052  Sum_probs=58.8

Q ss_pred             CCCCCccccccCccCCCCCCCCCCcccccCCCcceeeeEEecc-CCceEEEEecCCCCCCCCC
Q 013573           92 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  153 (440)
Q Consensus        92 ~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ver~~-dg~~~~i~Y~G~H~H~~p~  153 (440)
                      ..+|||+|||||||.|||++|||+||||++++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus         9 ~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           9 LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            4799999999999999999999999999999999999999975 7899999999999999873