Citrus Sinensis ID: 013574

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHPSLNEMEDNKHLYHIVVTDWFS
cccccccccccccccccccccccccccccccccccHHHHHHHcccEEEEcccccccccccccccccccccHHHHHHHHHccccccccccEEEEEcEEEEEcccccHHHHHHHHHHccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccEEEEEEccccccccccEEEEccccHHHHHHHHHHcccccHHHHHHHHHHcccccccccEEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccEEEEEEEEEcccccccEEccccccccccccccccccccEEEEcccccccHHHHHHHHHHHcccEEcccEEEEEEccHHHHHHHHHHHHHHHHHHccHHHHHHccccc
ccccEcccccccEEccccccccEEccccHHHccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHcEEEEcccccccEEEEEEcEEEEEcccHHHHHHHHHcccccccccccccEEEEEccccccccHHHHccHHHHHHHHHHHHHHHHHHHHcccEcccccccccEEEEEcccHHccccccEEEEccccHHHHHHHccEEEEccHHHHHHHHHcccEEEEccEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHccHHHHHHHHHHHHHHcccEEEccccHHHHHHHccccccccHccccccccEEcEEEEEEHHHcccEEEcccccccEEEcccccccEEcEEEEEcccccHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHcccHHHHEccccccEEEEcccc
massvispaptssfinnkkdlgsfcfsstsqfsvnkcKKLAVSKKIVSVmapqqserrpattgsvkNAMTLTEKIFSrasekpqlspgdnvWVNVDILMthdvcgpgsfgifkkefgenakvwdrekiviipdhyiftsderanRNVDILRDFCMEQNIKYFYDIKdlgnfkanpdykgvCHIALaqeghcrpgevllgtdshtctagafgqfatgigntdagfvlgtgkvllkvpptlrfvldgempdyLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEaggkngvvpadgttfkyledktslpyepvysdekasflseyrfdiskleplvakphspdnralareckdvkidrvyigsctggktEDFLAAAKVFLASVRAISIITFFRQpiesyknllhpslnemednkhLYHIVVTDWFS
massvispaptssfinnkkDLGSFCFSSTSQFSVNKCKKLAVSKKIVsvmapqqserrpattgsvknAMTLTEKIFsrasekpqlspgDNVWVNVDILMTHDVCGPGSFGIFKKEFgenakvwdrekiviipdhyiftsderanRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEplvakphspdnralareckdvkidRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHPSLnemednkhLYHIVVTDWFS
MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHPSLNEMEDNKHLYHIVVTDWFS
********************LGSFCFSSTSQFSVNKCKKLAVSKKIV*****************************************DNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLV*********ALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHPSLNEMEDNKHLYHIVVTDWF*
*************FINNKKDLGSFCF********************************************LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHPSLNEMEDNKHLYHIVVTDWFS
*********PTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVM**************VKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHPSLNEMEDNKHLYHIVVTDWFS
******SPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQ************NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHPSLNEMEDNKHLYHIVVTDWFS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFFRQPIESYKNLLHPSLNEMEDNKHLYHIVVTDWFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query440 2.2.26 [Sep-21-2011]
Q94AR8509 3-isopropylmalate dehydra yes no 0.915 0.791 0.772 0.0
P81291424 Isopropylmalate/citramala yes no 0.711 0.738 0.456 2e-79
O27439419 3-isopropylmalate dehydra yes no 0.711 0.747 0.444 2e-75
Q8TVF2418 3-isopropylmalate dehydra yes no 0.704 0.741 0.435 5e-74
Q8TQZ3420 3-isopropylmalate dehydra yes no 0.704 0.738 0.432 4e-71
B0TCR2420 3-isopropylmalate dehydra yes no 0.713 0.747 0.398 7e-71
Q8PUG1420 3-isopropylmalate dehydra yes no 0.704 0.738 0.425 7e-71
O67078432 3-isopropylmalate dehydra yes no 0.722 0.736 0.386 2e-70
Q2LWJ2420 3-isopropylmalate dehydra yes no 0.713 0.747 0.420 9e-70
B8CX22420 3-isopropylmalate dehydra yes no 0.709 0.742 0.402 1e-69
>sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/404 (77%), Positives = 360/404 (89%), Gaps = 1/404 (0%)

Query: 3   SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATT 62
           +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TT
Sbjct: 2   ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTT 60

Query: 63  GSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKV 122
           GSVK  MT+TEKI +RASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKV
Sbjct: 61  GSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKV 120

Query: 123 WDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCH 182
           WD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH
Sbjct: 121 WDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCH 180

Query: 183 IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFV 242
           +ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+
Sbjct: 181 VALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFI 240

Query: 243 LDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302
           LDGEMP YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGK
Sbjct: 241 LDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300

Query: 303 NGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALA 362
           NGV+P D TT  Y+E++TS+P+EPVYSD  ASF+++YRFD+SKLEP+VAKPHSPDNRALA
Sbjct: 301 NGVIPPDATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALA 360

Query: 363 RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITFF 406
           RECKDVKIDRVYIGSCTGGKTEDF+AAAK+F A+ R + + TF 
Sbjct: 361 RECKDVKIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTFL 404
Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 3
>sp|P81291|LEUC_METJA Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=leuC PE=1 SV=1 Back     alignment and function description
>sp|O27439|LEUC1_METTH 3-isopropylmalate dehydratase large subunit 1 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=leuC1 PE=3 SV=1 Back     alignment and function description
>sp|Q8TVF2|LEUC1_METKA 3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=leuC1 PE=3 SV=1 Back     alignment and function description
>sp|Q8TQZ3|LEUC2_METAC 3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=leuC2 PE=3 SV=1 Back     alignment and function description
>sp|B0TCR2|LEUC_HELMI 3-isopropylmalate dehydratase large subunit OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|Q8PUG1|LEUC2_METMA 3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=leuC2 PE=3 SV=2 Back     alignment and function description
>sp|O67078|LEUC_AQUAE 3-isopropylmalate dehydratase large subunit OS=Aquifex aeolicus (strain VF5) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|Q2LWJ2|LEUC_SYNAS 3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|B8CX22|LEUC_HALOH 3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
255574875510 3-isopropylmalate dehydratase, putative 0.884 0.762 0.859 0.0
225439231508 PREDICTED: 3-isopropylmalate dehydratase 0.827 0.716 0.895 0.0
296085913528 unnamed protein product [Vitis vinifera] 0.827 0.689 0.895 0.0
225433279508 PREDICTED: 3-isopropylmalate dehydratase 0.915 0.793 0.839 0.0
224110650462 predicted protein [Populus trichocarpa] 0.811 0.772 0.901 0.0
356553399500 PREDICTED: 3-isopropylmalate dehydratase 0.895 0.788 0.818 0.0
449461279510 PREDICTED: 3-isopropylmalate dehydratase 0.890 0.768 0.811 0.0
356562389502 PREDICTED: 3-isopropylmalate dehydratase 0.897 0.786 0.813 0.0
357439825505 3-isopropylmalate dehydratase [Medicago 0.909 0.792 0.793 0.0
18414006509 3-isopropylmalate dehydratase [Arabidops 0.915 0.791 0.772 0.0
>gi|255574875|ref|XP_002528344.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] gi|223532212|gb|EEF34016.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/392 (85%), Positives = 364/392 (92%), Gaps = 3/392 (0%)

Query: 17  NKKDLGSFCFSSTSQ--FSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEK 74
            KKDLG   FSS S   +S+ KCKK ++SKK+VSVMAPQQSER PATTGSVK AMT+TEK
Sbjct: 15  TKKDLGLSAFSSQSSPFYSIPKCKK-SISKKVVSVMAPQQSERTPATTGSVKTAMTMTEK 73

Query: 75  IFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDH 134
           I +RASEK QLSPG+NVWVNVD+LMTHDVCGPGS GIFK+EFG+NA VWDREKIVIIPDH
Sbjct: 74  ILARASEKSQLSPGENVWVNVDVLMTHDVCGPGSIGIFKREFGQNATVWDREKIVIIPDH 133

Query: 135 YIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPG 194
           YIFT+DERANRNVDILRDFC EQN+KYFYDIKDL NFK NPDYKGVCH+ALAQEGHCRPG
Sbjct: 134 YIFTTDERANRNVDILRDFCQEQNVKYFYDIKDLSNFKVNPDYKGVCHVALAQEGHCRPG 193

Query: 195 EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAK 254
           EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPTLRFV+DGEMPDYLLAK
Sbjct: 194 EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYLLAK 253

Query: 255 DLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFK 314
           DLILQIIGEISV+GATYKSMEFVGTTVE L+MEERMTLCNMVVEAGGKNGV+P+D TTFK
Sbjct: 254 DLILQIIGEISVSGATYKSMEFVGTTVESLNMEERMTLCNMVVEAGGKNGVIPSDSTTFK 313

Query: 315 YLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVY 374
           YLEDKTS+P+EPVYSDEKA FLSEYRFD+SKLEPLVAKPHSPDN ALARECKDVKIDRVY
Sbjct: 314 YLEDKTSVPFEPVYSDEKARFLSEYRFDVSKLEPLVAKPHSPDNCALARECKDVKIDRVY 373

Query: 375 IGSCTGGKTEDFLAAAKVFLASVRAISIITFF 406
           IGSCTGGKTEDF+AAAKVFLAS + + + TF 
Sbjct: 374 IGSCTGGKTEDFMAAAKVFLASGKKVKVPTFL 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439231|ref|XP_002271046.1| PREDICTED: 3-isopropylmalate dehydratase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085913|emb|CBI31237.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433279|ref|XP_002285491.1| PREDICTED: 3-isopropylmalate dehydratase [Vitis vinifera] gi|296083736|emb|CBI23725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110650|ref|XP_002315591.1| predicted protein [Populus trichocarpa] gi|222864631|gb|EEF01762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356553399|ref|XP_003545044.1| PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max] Back     alignment and taxonomy information
>gi|449461279|ref|XP_004148369.1| PREDICTED: 3-isopropylmalate dehydratase-like [Cucumis sativus] gi|449505250|ref|XP_004162416.1| PREDICTED: 3-isopropylmalate dehydratase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356562389|ref|XP_003549454.1| PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max] Back     alignment and taxonomy information
>gi|357439825|ref|XP_003590190.1| 3-isopropylmalate dehydratase [Medicago truncatula] gi|355479238|gb|AES60441.1| 3-isopropylmalate dehydratase [Medicago truncatula] Back     alignment and taxonomy information
>gi|18414006|ref|NP_567405.1| 3-isopropylmalate dehydratase [Arabidopsis thaliana] gi|75249794|sp|Q94AR8.1|LEUC_ARATH RecName: Full=3-isopropylmalate dehydratase; AltName: Full=Isopropylmalate isomerase large subunit 1; Short=AtIIL1; Flags: Precursor gi|15027971|gb|AAK76516.1| unknown protein [Arabidopsis thaliana] gi|21436051|gb|AAM51226.1| unknown protein [Arabidopsis thaliana] gi|332657878|gb|AEE83278.1| 3-isopropylmalate dehydratase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
TAIR|locus:2142120509 IIL1 "isopropyl malate isomera 0.913 0.789 0.774 2.9e-174
TIGR_CMR|DET_0828416 DET_0828 "3-isopropylmalate de 0.706 0.747 0.419 2.9e-64
TIGR_CMR|CHY_0522421 CHY_0522 "3-isopropylmalate de 0.706 0.738 0.395 7.6e-64
UNIPROTKB|Q0QLE2420 dmdA "2,3-dimethylmalate dehyd 0.709 0.742 0.381 1.4e-57
UNIPROTKB|Q3AD33417 leuC "3-isopropylmalate dehydr 0.7 0.738 0.386 2.5e-56
TIGR_CMR|CHY_1105417 CHY_1105 "3-isopropylmalate de 0.7 0.738 0.386 2.5e-56
TIGR_CMR|DET_0448417 DET_0448 "homoaconitate hydrat 0.695 0.733 0.388 1.9e-53
TIGR_CMR|GSU_1903427 GSU_1903 "3-isopropylmalate de 0.7 0.721 0.374 1.4e-48
CGD|CAL0005750 776 LEU1 [Candida albicans (taxid: 0.579 0.328 0.329 5.9e-39
ASPGD|ASPL0000007160 772 luA [Emericella nidulans (taxi 0.615 0.351 0.328 8.9e-38
TAIR|locus:2142120 IIL1 "isopropyl malate isomerase large subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1693 (601.0 bits), Expect = 2.9e-174, P = 2.9e-174
 Identities = 312/403 (77%), Positives = 360/403 (89%)

Query:     3 SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATT 62
             +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TT
Sbjct:     2 ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTT 60

Query:    63 GSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKV 122
             GSVK  MT+TEKI +RASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKV
Sbjct:    61 GSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKV 120

Query:   123 WDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCH 182
             WD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH
Sbjct:   121 WDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCH 180

Query:   183 IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFV 242
             +ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+
Sbjct:   181 VALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFI 240

Query:   243 LDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302
             LDGEMP YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGK
Sbjct:   241 LDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300

Query:   303 NGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALA 362
             NGV+P D TT  Y+E++TS+P+EPVYSD  ASF+++YRFD+SKLEP+VAKPHSPDNRALA
Sbjct:   301 NGVIPPDATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALA 360

Query:   363 RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASVRAISIITF 405
             RECKDVKIDRVYIGSCTGGKTEDF+AAAK+F A+ R + + TF
Sbjct:   361 RECKDVKIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTF 403
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0016836 "hydro-lyase activity" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP
GO:0050486 "intramolecular transferase activity, transferring hydroxy groups" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0009536 "plastid" evidence=IDA
TIGR_CMR|DET_0828 DET_0828 "3-isopropylmalate dehydratase, large subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0522 CHY_0522 "3-isopropylmalate dehydratase, large subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q0QLE2 dmdA "2,3-dimethylmalate dehydratase large subunit" [Eubacterium barkeri (taxid:1528)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AD33 leuC "3-isopropylmalate dehydratase large subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1105 CHY_1105 "3-isopropylmalate dehydratase, large subunit family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0448 DET_0448 "homoaconitate hydratase family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1903 GSU_1903 "3-isopropylmalate dehydratase, large subunit, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
CGD|CAL0005750 LEU1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007160 luA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AR8LEUC_ARATH4, ., 2, ., 1, ., 3, 30.77220.91590.7917yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.976
3rd Layer4.2.1.330.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X0404
hypothetical protein (463 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.III.2339.1
3-isopropylmalate isomerase/dehydratase small subunit (EC-4.2.1.33) (172 aa)
• ••••• 0.998
gw1.V.3049.1
2-isopropylmalate synthase (EC-2.3.3.13) (545 aa)
• •• •• 0.998
gw1.I.272.1
hypothetical protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-iso [...] (382 aa)
• •• •• 0.995
estExt_fgenesh4_pg.C_LG_VIII1506
SubName- Full=Putative uncharacterized protein; (443 aa)
• •  •••0.929
gw1.17412.1.1
Predicted protein (252 aa)
• •  •• 0.895
grail3.0005029001
acetolactate synthase I/II/III large subunit (EC-2.2.1.6) (651 aa)
• •   • 0.864
eugene3.00030830
lactate dehydrogenase (EC-1.1.1.27) (351 aa)
•    •• 0.826
estExt_fgenesh4_pg.C_LG_XVI0781
SubName- Full=Putative uncharacterized protein; (363 aa)
• •  •• 0.808
eugene3.00280188
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (361 aa)
• •  •• 0.808
gw1.130.69.1
N-acetyl-gamma-glutamyl-phosphate reductase (EC-1.2.1.38) (352 aa)
•     • 0.805

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
cd01583382 cd01583, IPMI, 3-isopropylmalate dehydratase catal 1e-150
PRK00402418 PRK00402, PRK00402, 3-isopropylmalate dehydratase 1e-145
COG0065423 COG0065, LeuC, 3-isopropylmalate dehydratase large 1e-128
TIGR01343412 TIGR01343, hacA_fam, homoaconitate hydratase famil 1e-113
TIGR02086412 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratas 1e-105
TIGR02083419 TIGR02083, LEU2, 3-isopropylmalate dehydratase, la 1e-90
PRK12466471 PRK12466, PRK12466, isopropylmalate isomerase larg 1e-70
cd01351389 cd01351, Aconitase, Aconitase catalytic domain; Ac 3e-59
PRK05478466 PRK05478, PRK05478, isopropylmalate isomerase larg 5e-58
pfam00330464 pfam00330, Aconitase, Aconitase family (aconitate 6e-51
cd01585380 cd01585, AcnA_Bact, Aconitase catalyzes the revers 3e-49
TIGR01342 658 TIGR01342, acon_putative, aconitate hydratase, put 1e-48
TIGR00170465 TIGR00170, leuC, 3-isopropylmalate dehydratase, la 3e-47
PRK07229 646 PRK07229, PRK07229, aconitate hydratase; Validated 3e-47
COG1048 861 COG1048, AcnA, Aconitase A [Energy production and 2e-37
TIGR00139 712 TIGR00139, h_aconitase, homoaconitase 9e-32
cd01582363 cd01582, Homoaconitase, Homoaconitase and other un 5e-31
cd01584412 cd01584, AcnA_Mitochondrial, Aconitase catalyzes t 2e-24
TIGR01340 745 TIGR01340, aconitase_mito, aconitate hydratase, mi 7e-23
PTZ00092 898 PTZ00092, PTZ00092, aconitate hydratase-like prote 6e-17
TIGR01341 876 TIGR01341, aconitase_1, aconitate hydratase 1 7e-17
cd01586404 cd01586, AcnA_IRP, Aconitase A catalytic domain 1e-12
PLN00070 936 PLN00070, PLN00070, aconitate hydratase 6e-12
PRK12881 889 PRK12881, acnA, aconitate hydratase; Provisional 2e-10
cd01581436 cd01581, AcnB, Aconitate hydratase B catalyses the 2e-09
TIGR02333 858 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh 6e-09
COG1049852 COG1049, AcnB, Aconitase B [Energy production and 1e-07
PRK09277 888 PRK09277, PRK09277, aconitate hydratase; Validated 3e-07
PRK09238835 PRK09238, PRK09238, bifunctional aconitate hydrata 4e-07
PRK11413 751 PRK11413, PRK11413, putative hydratase; Provisiona 1e-06
TIGR00117844 TIGR00117, acnB, aconitate hydratase 2 4e-04
PLN00094 938 PLN00094, PLN00094, aconitate hydratase 2; Provisi 0.001
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information 
 Score =  432 bits (1113), Expect = e-150
 Identities = 144/309 (46%), Positives = 190/309 (61%), Gaps = 18/309 (5%)

Query: 97  ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCME 156
           + + HDV  P +F   ++   E  KVWD EKIV + DH + T D +A   V  LR F  E
Sbjct: 1   LHLVHDVTSPQAFEGLREAGRE--KVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKE 58

Query: 157 QNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216
             I  F+D+            +G+CH+ L ++G   PG  ++G DSHTCT GAFG FATG
Sbjct: 59  FGIN-FFDV----------GRQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATG 107

Query: 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEF 276
           IG TD   VL TGK+  +VP T+R  ++G++P  + AKD+IL IIG+I V GATYK+MEF
Sbjct: 108 IGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEF 167

Query: 277 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKASFL 336
            G  +E LSMEERMTLCNM +EAG K G+V  D TTF+YL+ +    ++ + SDE A + 
Sbjct: 168 AGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAEYD 227

Query: 337 SEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLA- 395
                D S+LEP VA PHSPDN     E + +KID+V+IGSCT G+ ED  AAA++    
Sbjct: 228 KVVEIDASELEPQVAWPHSPDNVVPVSEVEGIKIDQVFIGSCTNGRLEDLRAAAEILKGR 287

Query: 396 ----SVRAI 400
                VR I
Sbjct: 288 KVADGVRLI 296

Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. Length = 382
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein Back     alignment and domain information
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase) Back     alignment and domain information
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase Back     alignment and domain information
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial Back     alignment and domain information
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1 Back     alignment and domain information
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain Back     alignment and domain information
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase Back     alignment and domain information
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional Back     alignment and domain information
>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2 Back     alignment and domain information
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 440
COG0065423 LeuC 3-isopropylmalate dehydratase large subunit [ 100.0
TIGR02083419 LEU2 3-isopropylmalate dehydratase, large subunit. 100.0
TIGR01343412 hacA_fam homoaconitate hydratase family protein. T 100.0
PRK00402418 3-isopropylmalate dehydratase large subunit; Revie 100.0
TIGR02086412 IPMI_arch 3-isopropylmalate dehydratase, large sub 100.0
PRK12466471 isopropylmalate isomerase large subunit; Provision 100.0
TIGR00170465 leuC 3-isopropylmalate dehydratase, large subunit. 100.0
PRK05478466 isopropylmalate isomerase large subunit; Validated 100.0
cd01583382 IPMI 3-isopropylmalate dehydratase catalyzes the i 100.0
TIGR00139 712 h_aconitase homoaconitase. Homoaconitase, aconitas 100.0
TIGR01342 658 acon_putative aconitate hydratase, putative, Aquif 100.0
PRK07229 646 aconitate hydratase; Validated 100.0
cd01585380 AcnA_Bact Aconitase catalyzes the reversible isome 100.0
PF00330465 Aconitase: Aconitase family (aconitate hydratase); 100.0
cd01581436 AcnB Aconitate hydratase B catalyses the formation 100.0
TIGR01340 745 aconitase_mito aconitate hydratase, mitochondrial. 100.0
PRK11413 751 putative hydratase; Provisional 100.0
cd01584412 AcnA_Mitochondrial Aconitase catalyzes the reversi 100.0
PRK09238835 bifunctional aconitate hydratase 2/2-methylisocitr 100.0
cd01582363 Homoaconitase Homoaconitase and other uncharacteri 100.0
TIGR00117844 acnB aconitate hydratase 2. Aconitate hydratase (a 100.0
PLN00094 938 aconitate hydratase 2; Provisional 100.0
cd01351389 Aconitase Aconitase catalytic domain; Aconitase ca 100.0
PRK09277 888 aconitate hydratase; Validated 100.0
PRK12881 889 acnA aconitate hydratase; Provisional 100.0
PTZ00092 898 aconitate hydratase-like protein; Provisional 100.0
TIGR01341 876 aconitase_1 aconitate hydratase 1. This model repr 100.0
PLN00070 936 aconitate hydratase 100.0
TIGR02333 858 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe 100.0
cd01586404 AcnA_IRP Aconitase A catalytic domain. Aconitase A 100.0
COG1048 861 AcnA Aconitase A [Energy production and conversion 100.0
KOG0453 778 consensus Aconitase/homoaconitase (aconitase super 100.0
KOG0452 892 consensus RNA-binding translational regulator IRP 100.0
COG1049852 AcnB Aconitase B [Energy production and conversion 100.0
KOG0454502 consensus 3-isopropylmalate dehydratase (aconitase 100.0
KOG0454 502 consensus 3-isopropylmalate dehydratase (aconitase 99.15
COG1679403 Predicted aconitase [General function prediction o 94.58
PF04412400 DUF521: Protein of unknown function (DUF521); Inte 93.51
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3e-117  Score=892.52  Aligned_cols=342  Identities=40%  Similarity=0.644  Sum_probs=332.6

Q ss_pred             CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCHHHHHH
Q 013574           67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN  146 (440)
Q Consensus        67 ~~mTl~EKIla~~~~~~~v~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~~~~~~  146 (440)
                      ++|||+||||++|++...+.|||.+.+++|++|+||.|+|++++.|+ +.|.  +||+|+|+++++||++|+.+.+.+++
T Consensus         1 ~~~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr-~~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~   77 (423)
T COG0065           1 SAKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLR-EAGR--KVRDPEKTVATFDHNVPTPDIKAAEQ   77 (423)
T ss_pred             CCccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHH-HhCC--cccCccceEEEecCCCCCccHHHHHH
Confidence            36999999999999999899999999999999999999999999996 5874  99999999999999999999999999


Q ss_pred             HHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCcccceeccCCchhhhhhh
Q 013574          147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL  226 (440)
Q Consensus       147 ~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlGala~GvG~td~a~~l  226 (440)
                      ++.||+|||++||.+|||+++          +|||||+++|+|+++||++|||+||||||+|||||||+|+|+||++.+|
T Consensus        78 ~~~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vl  147 (423)
T COG0065          78 QKELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVL  147 (423)
T ss_pred             HHHHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHH
Confidence            999999999999999999874          7999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhhhhhhccccCceeeec
Q 013574          227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV  306 (440)
Q Consensus       227 ~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~Tl~NM~~E~GAk~gif  306 (440)
                      +||++|+++||+++|+++|+||+||+||||||+||+++|++|++|+++||+|+.+++|||++|||||||++|+|||+|||
T Consensus       148 atg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii  227 (423)
T COG0065         148 ATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGII  227 (423)
T ss_pred             HhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHhhhcCC--CCCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccccccc--ceeceEEEecCCCCC
Q 013574          307 PADGTTFKYLEDKTS--LPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--VKIDRVYIGSCTGGK  382 (440)
Q Consensus       307 ~pD~~t~~yL~~~~~--~~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~e~~g--~kId~v~IGSCTngr  382 (440)
                      +||++|++||+++..  ..|+.+++|+||.|+++++||+|+|||+||+|++|||+++++|+.+  ++|||||||||||||
T Consensus       228 ~pDe~T~~Y~k~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~~i~iDqVFIGSCTNgR  307 (423)
T COG0065         228 APDETTFEYLKEWDGAVAYWKTLKSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPDPIKIDQVFIGSCTNGR  307 (423)
T ss_pred             CCcHhHHHHHHHHhccccccceecCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCCceeeceEEEeccCCcc
Confidence            999999999998766  6789999999999999999999999999999999999999999999  999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCcce--ecEEEECccH-HHHHHhhccccc
Q 013574          383 TEDFLAAAKVFLASVRAIS--IITFFRQPIE-SYKNLLHPSLNE  423 (440)
Q Consensus       383 ~eDL~~AA~vL~~~G~kv~--Vr~~V~PaS~-V~~~~l~~G~~~  423 (440)
                      +|||++||+|||  |+||+  ||++|+|||+ ||+||+++||.+
T Consensus       308 ieDLr~AA~Ilk--grkva~~Vr~iVvP~S~~V~~qA~~eGl~~  349 (423)
T COG0065         308 IEDLRAAAEILK--GRKVAPGVRAIVVPGSRRVKEQAEKEGLDK  349 (423)
T ss_pred             HHHHHHHHHHhc--cCccCCCceEEEecCcHHHHHHHHHccHHH
Confidence            999999999999  99997  9999999999 999999999965

>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>TIGR01343 hacA_fam homoaconitate hydratase family protein Back     alignment and domain information
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PRK12466 isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PRK05478 isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information
>TIGR00139 h_aconitase homoaconitase Back     alignment and domain information
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>PRK07229 aconitate hydratase; Validated Back     alignment and domain information
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4 Back     alignment and domain information
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle Back     alignment and domain information
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial Back     alignment and domain information
>PRK11413 putative hydratase; Provisional Back     alignment and domain information
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>TIGR00117 acnB aconitate hydratase 2 Back     alignment and domain information
>PLN00094 aconitate hydratase 2; Provisional Back     alignment and domain information
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK09277 aconitate hydratase; Validated Back     alignment and domain information
>PRK12881 acnA aconitate hydratase; Provisional Back     alignment and domain information
>PTZ00092 aconitate hydratase-like protein; Provisional Back     alignment and domain information
>TIGR01341 aconitase_1 aconitate hydratase 1 Back     alignment and domain information
>PLN00070 aconitate hydratase Back     alignment and domain information
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>cd01586 AcnA_IRP Aconitase A catalytic domain Back     alignment and domain information
>COG1048 AcnA Aconitase A [Energy production and conversion] Back     alignment and domain information
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism] Back     alignment and domain information
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1049 AcnB Aconitase B [Energy production and conversion] Back     alignment and domain information
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] Back     alignment and domain information
>COG1679 Predicted aconitase [General function prediction only] Back     alignment and domain information
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
1nis_A 754 Crystal Structure Of Aconitase With Trans-Aconitate 8e-14
1ami_A 754 Steric And Conformational Features Of The Aconitase 8e-14
5acn_A 754 Structure Of Activated Aconitase. Formation Of The 8e-14
1c96_A 753 S642a:citrate Complex Of Aconitase Length = 753 8e-14
1aco_A 754 Crystal Structure Of Aconitase With Transaconitate 8e-14
1b0m_A 753 Aconitase R644q:fluorocitrate Complex Length = 753 9e-14
1c97_A 753 S642a:isocitrate Complex Of Aconitase Length = 753 9e-14
1b0j_A 754 Crystal Structure Of Aconitase With Isocitrate Leng 9e-14
2b3x_A 888 Structure Of An Orthorhombic Crystal Form Of Human 9e-14
3snp_A 908 Crystal Structure Analysis Of Iron Regulatory Prote 2e-10
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And Nitrocitrate Bound Length = 754 Back     alignment and structure 
Iteration: 1

 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 101/230 (43%), Gaps = 17/230 (7%)
Query: 179 GVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPT 238
           G+ H  +  E +  PG +L+GTDSHT   G  G    G+G  DA  V+      LK P  
Sbjct: 144 GIIH-QIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKV 202
Query: 239 LRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVE 298
           +   L G +  +   KD+IL++ G ++V G T   +E+ G  V+ +S     T+CNM  E
Sbjct: 203 IGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAE 262
Query: 299 AGGKNGVVPADGTTFKYLE-----DKTSLPYE---PVYSDEKASFLSEYRFDISKLEPLV 350
            G    V P +    KYL      D  +L  E    +  D    +      ++S+L+P +
Sbjct: 263 IGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHI 322
Query: 351 AKPHSPD--------NRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKV 392
             P +PD             +E   + I    IGSCT    ED   +A V
Sbjct: 323 NGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAV 372
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase Mechanism Length = 754 Back     alignment and structure
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The (4fe-4s) Cluster In The Crystal Length = 754 Back     alignment and structure
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound Length = 754 Back     alignment and structure
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex Length = 753 Back     alignment and structure
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate Length = 754 Back     alignment and structure
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888 Back     alignment and structure
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire Rna Length = 908 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 1e-78
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 9e-43
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 Back     alignment and structure
 Score =  260 bits (665), Expect = 1e-78
 Identities = 67/375 (17%), Positives = 113/375 (30%), Gaps = 60/375 (16%)

Query: 57  RRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEF 116
           R+           +L +K+  RA     + PG      +  + + D  GP +    K   
Sbjct: 370 RQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDL- 428

Query: 117 GENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 176
                 +  + ++    H               L DF M +                   
Sbjct: 429 --ACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRP------------ 474

Query: 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVP 236
             GV H  L       P  V  G DSHT         +   G+    F   TG + L +P
Sbjct: 475 GDGVIHSWL--NRMLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMP 529

Query: 237 PTLRFVLDGEMPDYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSM 286
            ++     G+M   +  +DL+  I       G            +         +  L +
Sbjct: 530 ESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKV 589

Query: 287 EERMTLCNMVVEAGGKNGVVPADG-TTFKYLEDKTSL----------------------- 322
           E+   L +   E       +  +     +YL     L                       
Sbjct: 590 EQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGME 649

Query: 323 ----PYEPVYSDEKASFLSEYRFDISKL-EPLVAKPHSPDNRALARECKDVKIDRVYIGS 377
                 E + +D  A + +    D++ + EP++  P+ PD+       +  KID V+IGS
Sbjct: 650 KWLANPELLEADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGS 709

Query: 378 CTGGKTEDFLAAAKV 392
           C       F AA K+
Sbjct: 710 CMTNI-GHFRAAGKL 723
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Length = 753 Back     alignment and structure
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 100.0
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 100.0
1l5j_A865 Aconitate hydratase 2; molecular recognition, RNA 100.0
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Back     alignment and structure
Probab=100.00  E-value=9.7e-99  Score=819.49  Aligned_cols=341  Identities=25%  Similarity=0.328  Sum_probs=315.0

Q ss_pred             CCCCcHHHHHHHHhcCCCC---C-CCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCC--
Q 013574           66 KNAMTLTEKIFSRASEKPQ---L-SPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS--  139 (440)
Q Consensus        66 ~~~mTl~EKIla~~~~~~~---v-~~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~--  139 (440)
                      ++||||+||||++|++...   + ++||++.+++|++++||+|+|+++..|+. +|. .++|+|+++  ++||++|+.  
T Consensus        32 ~~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-~G~-~~v~~P~~~--~~DH~v~~~~~  107 (753)
T 1c96_A           32 NRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SGL-PKVAVPSTI--HCDHLIEAQLG  107 (753)
T ss_dssp             CSCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-HTC-SSCSSCEEE--ECCSSCCBSSC
T ss_pred             CCCCCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHH-hCC-CCCCCCCce--ecCCCCCCCCC
Confidence            4689999999999998752   3 67899999999999999999999999964 774 679999984  689999987  


Q ss_pred             ---C-----HHHHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCccc
Q 013574          140 ---D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFG  211 (440)
Q Consensus       140 ---~-----~~~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlG  211 (440)
                         +     .++.+.+++||+||+++|+. ||           |||+|||||++.|. +++||+++|||||||||+||||
T Consensus       108 ~~~d~~~~~~~n~e~~~~l~~~a~~~gi~-~~-----------~pg~GI~Hqv~~E~-~~~Pg~~ivGtDSHT~t~GalG  174 (753)
T 1c96_A          108 GEKDLRRAKDINQEVYNFLATAGAKYGVG-FW-----------RPGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLG  174 (753)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHTCE-EE-----------CTTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGT
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHHCCCE-EE-----------CCCCCeeCeEeccc-ccCCCcEEecCCCCCCccchhh
Confidence               2     34557799999999999995 55           46799999998875 9999999999999999999999


Q ss_pred             ceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhh
Q 013574          212 QFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMT  291 (440)
Q Consensus       212 ala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~T  291 (440)
                      +||||||++|++.+|+++++||++||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+|+||++||+++|||
T Consensus       175 ~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~T  254 (753)
T 1c96_A          175 GICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMAT  254 (753)
T ss_dssp             CEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHH
T ss_pred             hheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccCCcchhhh
Confidence            99999999999999997777799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccCceeeeccCchhHHHHhhhcCCC--------CCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccc
Q 013574          292 LCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR  363 (440)
Q Consensus       292 l~NM~~E~GAk~gif~pD~~t~~yL~~~~~~--------~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~  363 (440)
                      ||||++|+||++|+||+|++|++||+.+++.        .|+.+++|+||.|+++++||||+|||+||+|++|+|+.|++
T Consensus       255 I~NMa~E~GA~~gifp~De~T~~YL~~~gr~~~~~~~~~y~~~l~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~  334 (753)
T 1c96_A          255 ICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVA  334 (753)
T ss_dssp             HHHHGGGGTCSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHH
T ss_pred             hhccchhhCcccccccCcHHHHHHHHhcCCcHHHHHHHHHHhhccCCCCCceeEEEEEEccccceeecCCCCCcceeEhH
Confidence            9999999999999999999999999999872        23678899999999999999999999999999999999999


Q ss_pred             ccccc--------eeceEEEecCCCCChHHHHHHHHHHHh---cCCcceecEEEECccH-HHHHHhhccccc
Q 013574          364 ECKDV--------KIDRVYIGSCTGGKTEDFLAAAKVFLA---SVRAISIITFFRQPIE-SYKNLLHPSLNE  423 (440)
Q Consensus       364 e~~g~--------kId~v~IGSCTngr~eDL~~AA~vL~~---~G~kv~Vr~~V~PaS~-V~~~~l~~G~~~  423 (440)
                      |+.+.        +||+||||||||||+|||++||+|||+   +|.+.+|+++|+|+|+ |+++|+++|+.+
T Consensus       335 e~~~~~~~~~~~~~Vd~~~IGSCTN~~~~Dl~~AA~ilkga~~~~v~~~V~~~v~PgS~~V~~~~~~~Gl~~  406 (753)
T 1c96_A          335 EVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ  406 (753)
T ss_dssp             HHHHHHHHHTCCCBEEEEEEBTTTBCSHHHHHHHHHHHHHHHTTTCCCSSEEEECCSBHHHHHHHHHTTHHH
T ss_pred             HhhhhHhhcCCccceEEEEEecCCCCCHHHHHHHHHHhccHhhcCCCCCceEEEeCCCHHHHHHHHHcCcHH
Confidence            99988        999999999999999999999999995   4555569999999999 999999999865
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Back     alignment and structure
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 440
d1l5ja3490 c.83.1.1 (A:373-862) Aconitase B, C-terminal domai 5e-69
d1acoa2 527 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain 1e-48
d2b3ya2 629 c.83.1.1 (A:2-630) Iron-responsive element binding 3e-43
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 490 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Aconitase B, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  224 bits (573), Expect = 5e-69
 Identities = 64/364 (17%), Positives = 107/364 (29%), Gaps = 60/364 (16%)

Query: 69  MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
            +L +K+  RA     + PG      +  + + D  GP +    K         +  + +
Sbjct: 10  FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDL---ACLGFSADLV 66

Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
           +    H               L DF M +                     GV H  L   
Sbjct: 67  MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRP------------GDGVIHSWL--N 112

Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
               P  V  G DSHT             G+    F   TG + L +P ++     G+M 
Sbjct: 113 RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 169

Query: 249 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 298
             +  +DL+  I       G            +         +  L +E+   L +   E
Sbjct: 170 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 229

Query: 299 AGGKNGVVPA-DGTTFKYLEDKTSLPY---------------------------EPVYSD 330
                  +        +YL     L                             E + +D
Sbjct: 230 RSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEAD 289

Query: 331 EKASFLSEYRFDISKLEPL-VAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAA 389
             A + +    D++ ++   +  P+ PD+       +  KID V+IGSC       F AA
Sbjct: 290 ADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCM-TNIGHFRAA 348

Query: 390 AKVF 393
            K+ 
Sbjct: 349 GKLL 352
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 527 Back     information, alignment and structure
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 629 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
d1acoa2 527 Aconitase A, N-terminal domain {Cow (Bos taurus) [ 100.0
d1l5ja3490 Aconitase B, C-terminal domain {Escherichia coli [ 100.0
d2b3ya2 629 Iron-responsive element binding protein 1, N-termi 100.0
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Aconitase A, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-99  Score=795.59  Aligned_cols=341  Identities=24%  Similarity=0.316  Sum_probs=309.2

Q ss_pred             CCCCcHHHHHHHHhcCC---CCCC-CCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCCH
Q 013574           66 KNAMTLTEKIFSRASEK---PQLS-PGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE  141 (440)
Q Consensus        66 ~~~mTl~EKIla~~~~~---~~v~-~Gd~v~v~vD~v~~hD~tgp~~~~~~~~e~G~~~~v~dp~kvv~~~DH~vp~~~~  141 (440)
                      +|||||+||||++|..+   ..+. .+++|.++||++++||.|+|+++..|++ +| .+++++|.+++  +||++|+...
T Consensus        32 ~rP~TL~EKI~~~Hl~~~~~~~~~~g~~~v~~~vDrv~~hD~T~~~a~~~l~~-~g-~~~~~~p~~v~--~DH~v~~~~~  107 (527)
T d1acoa2          32 NRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SG-LPKVAVPSTIH--CDHLIEAQLG  107 (527)
T ss_dssp             CSCCCHHHHHHHTTBSCTTTCCCCTTTSEEEECCSEEEEEHHHHHHHHHHHHH-HT-CSSCSSCEEEE--CCSSCCBSSC
T ss_pred             CCCcCHHHHHHHHHhcccccCcccCCCceEEEecCEEEEEccchHHHHHHHHH-cC-CCCCCCCCCEE--eCCCcCCccc
Confidence            57999999999999643   2244 4568999999999999999999999964 77 47899998864  5999998521


Q ss_pred             -----H-----HHHHHHHHHHHHHHcCcceeeecccCCCcccCCCCCeeeeeeecccceecCCceEEecCCCCccCCccc
Q 013574          142 -----R-----ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFG  211 (440)
Q Consensus       142 -----~-----~~~~~~~lr~fak~~gi~~f~d~~~~~~~~~~ppg~GI~Hqvl~eeg~~~PG~~ivGtDSHT~t~GAlG  211 (440)
                           .     +.+.+++++.+++++|+.+ |           ||++|||||++.| ++++||++++|+||||||+||||
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-----------~pg~GI~H~v~~E-~~~~PG~~ivg~DSHT~t~GalG  174 (527)
T d1acoa2         108 GEKDLRRAKDINQEVYNFLATAGAKYGVGF-W-----------RPGSGIIHQIILE-NYAYPGVLLIGTDSHTPNGGGLG  174 (527)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHTCEE-E-----------CTTSBCHHHHHHH-HTCCTTCEEEESSTTGGGGGGGT
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhhccce-e-----------ecCCceEEEEccc-ccccCCeEEecCCCCcccccccc
Confidence                 1     1234678889999999864 4           3578999998877 49999999999999999999999


Q ss_pred             ceeccCCchhhhhhhccceEEeecCCceeEEEEeeCCCCccHhHHHHHHHHHhcccccCceEEEEecCcccCCChhhhhh
Q 013574          212 QFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMT  291 (440)
Q Consensus       212 ala~GvG~td~a~~l~tG~~wlkvPetv~V~L~G~L~~gV~aKDviL~li~~l~~~G~~gk~vEF~G~gv~~LS~deR~T  291 (440)
                      +||||||++|++.+|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++|+++||+|+|+++||+++|||
T Consensus       175 ala~GvG~te~~~~~~t~~~~~~vPetv~v~l~G~l~~gvtakDviL~i~~~l~~~g~~g~~vEf~G~~i~~Ls~~~R~T  254 (527)
T d1acoa2         175 GICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMAT  254 (527)
T ss_dssp             CEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHCTTTTBTEEEEEESGGGGGSCHHHHHH
T ss_pred             ceeccCcHHHHHHHHhCCceeecCCcEEEEEEecCCCCCccHHHHHHHHHHHHhhcCCCceeEEEeccccceeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccCceeeeccCchhHHHHhhhcCCC--------CCccccCCCCCcccEEEEEeCCCcceeeecCCCCCCccccc
Q 013574          292 LCNMVVEAGGKNGVVPADGTTFKYLEDKTSL--------PYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAR  363 (440)
Q Consensus       292 l~NM~~E~GAk~gif~pD~~t~~yL~~~~~~--------~~~~l~~D~dA~Y~~~i~iDLs~LeP~VA~P~sPdnv~~v~  363 (440)
                      ||||++|+||++|+||+|++|++||+.+++.        .|+.+++|+||.|+++++||||+|||+||+|++|||+.|++
T Consensus       255 i~NMa~E~GA~~gif~~D~~t~~yl~~~gr~~~~~~~~~~~~~l~~D~~A~Y~~~ieiDls~ieP~Va~P~~Pd~~~pv~  334 (527)
T d1acoa2         255 ICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVA  334 (527)
T ss_dssp             HHHHGGGGTBSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHH
T ss_pred             hhhccccccceeeEEeccHHHHHHHhhcCccchhhcchhhhhhcccccCCccceEEEEEhHhchhheecCCCCcceeeec
Confidence            9999999999999999999999999998863        35668899999999999999999999999999999999998


Q ss_pred             cccc--------ceeceEEEecCCCCChHHHHHHHHHHH---hcCCcceecEEEECccH-HHHHHhhccccc
Q 013574          364 ECKD--------VKIDRVYIGSCTGGKTEDFLAAAKVFL---ASVRAISIITFFRQPIE-SYKNLLHPSLNE  423 (440)
Q Consensus       364 e~~g--------~kId~v~IGSCTngr~eDL~~AA~vL~---~~G~kv~Vr~~V~PaS~-V~~~~l~~G~~~  423 (440)
                      ++.+        ++||+||||||||||+|||++||+|||   ++|.+++|+++|+|||+ |+++|+++||.+
T Consensus       335 e~~~~~~~~~~~~~Id~afIGSCTN~r~~Dl~~AA~ilk~~~~~g~~~~v~~~v~PgS~~V~~~~~~~Gl~~  406 (527)
T d1acoa2         335 EVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ  406 (527)
T ss_dssp             HHHHHHHHHTCCCBEEEEEECSTTSCSHHHHHHHHHHHHHHHHTTCCCSSEEEECCSBHHHHHHHHHTTHHH
T ss_pred             hhhhhhhhhccCceeeEeeeccccCCCchHHHHHHHHHhhHhhcCCccccceEEecCcHHHHHHHHHCchHH
Confidence            8765        489999999999999999999999998   46777789999999999 999999999975
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure